Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:13418G>A	uc001aaa.3	+	3		c.661G>A			uc010nxq.1_Missense_Mutation_p.E61K|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		CCACCACCCCGAGATCACATT	0.562000													4	14					0	0	0.003080	0	0
NOL9	79707	broad.mit.edu	37	1	6605240	6605240	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:6605240T>C	uc001ans.2	-	4	764	c.745A>G	c.(745-747)AGT>GGT	p.S249G	NOL9_uc010nzs.1_RNA	NM_024654	NP_078930	Q5SY16	NOL9_HUMAN	nucleolar protein 9	249					maturation of 5.8S rRNA	nucleolus	ATP binding|polynucleotide 5'-hydroxyl-kinase activity|RNA binding			skin(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;2.46e-35)|all_epithelial(116;1.41e-22)|all_lung(118;7.59e-07)|Lung NSC(185;4.28e-06)|Colorectal(325;4.52e-05)|Breast(487;0.000353)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.47e-07)|COAD - Colon adenocarcinoma(227;1.47e-05)|Kidney(185;5.27e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|BRCA - Breast invasive adenocarcinoma(365;0.00113)|STAD - Stomach adenocarcinoma(132;0.0017)|READ - Rectum adenocarcinoma(331;0.0649)		GGAGTTGGACTCTGAAATCAA	0.363000													18	57					0	0	0.008871	0	0
H6PD	9563	broad.mit.edu	37	1	9307129	9307129	+	Silent	SNP	C	T	T	rs118005430	byFrequency	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:9307129C>T	uc001apt.2	+	3	1005	c.732C>T	c.(730-732)ACC>ACT	p.T244T		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	244	Glucose 1-dehydrogenase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	TGAAAGAGACCGTGGATGCTG	0.637000													33	25					0	0	0.002445	0	0
CASZ1	54897	broad.mit.edu	37	1	10714522	10714522	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:10714522C>T	uc001aro.2	-	10	2112	c.1792G>A	c.(1792-1794)GCC>ACC	p.A598T	CASZ1_uc001arp.1_Missense_Mutation_p.A598T|CASZ1_uc009vmx.2_Missense_Mutation_p.A622T	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	598					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		TGGCAGTCGGCTGTGCCACAG	0.597000													26	48					0	0	0.003330	0	0
EXOSC10	5394	broad.mit.edu	37	1	11129707	11129707	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:11129707G>A	uc001asa.2	-	22	2447	c.2397C>T	c.(2395-2397)CTC>CTT	p.L799L	EXOSC10_uc001asb.2_Silent_p.L774L	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	799					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		TGGAAATTTTGAGTCGTTTCT	0.468000													147	412					0	0	0.003610	0	0
MST1P2	11209	broad.mit.edu	37	1	16974662	16974662	+	RNA	SNP	C	A	A	rs28460410	by1000genomes	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:16974662C>A	uc010och.1	+	7		c.1122C>A			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GCTACCAGATCCGGCGTTGTA	0.692000													5	51					0.00116845	0.00165614	0.001168	1	0
MRTO4	51154	broad.mit.edu	37	1	19582531	19582531	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:19582531C>T	uc001bbs.2	+	3	432	c.177C>T	c.(175-177)GCC>GCT	p.A59A		NM_016183	NP_057267	Q9UKD2	MRT4_HUMAN	mRNA turnover 4 homolog	59					ribosome biogenesis	nuclear membrane|nucleolus					0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.87e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|GBM - Glioblastoma multiforme(114;0.00301)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCCGGAACGCCTGGAAGCACA	0.572000													20	17					0	0	0.001882	0	0
EPHB2	2048	broad.mit.edu	37	1	23234598	23234598	+	Silent	SNP	G	A	A	rs147014777	byFrequency	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:23234598G>A	uc009vqj.1	+	12	2434	c.2289G>A	c.(2287-2289)TCG>TCA	p.S763S	EPHB2_uc001bge.2_Silent_p.S764S|EPHB2_uc001bgf.2_Silent_p.S763S|EPHB2_uc010odu.1_Silent_p.S705S	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	763	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GCAAGGTGTCGGACTTTGGGC	0.572000									Hereditary_Prostate_Cancer				47	20					0	0	0.003610	0	0
ZNF436	80818	broad.mit.edu	37	1	23688758	23688758	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:23688758G>A	uc001bgt.2	-	3	1498	c.1117C>T	c.(1117-1119)CGG>TGG	p.R373W	ZNF436_uc001bgu.2_Missense_Mutation_p.R373W	NM_030634	NP_085137	Q9C0F3	ZN436_HUMAN	zinc finger protein 436	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;5.97e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000977)|KIRC - Kidney renal clear cell carcinoma(1967;0.00336)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		TGAGAGCTCCGGCTGAAGCTT	0.463000													46	31					0	0	0.003610	0	0
TCEB3	6924	broad.mit.edu	37	1	24078019	24078020	+	Silent	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:24078019_24078020CC>TT	uc001bho.2	+	4	1062_1063	c.1002_1003CC>TT	c.(1000-1005)AGCCTG>AGTTTG	p.334_335SL>SL		NM_003198	NP_003189	Q14241	ELOA1_HUMAN	elongin A	334_335					positive regulation of viral transcription|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|viral reproduction	integral to membrane	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.42e-24)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;4.74e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000973)|KIRC - Kidney renal clear cell carcinoma(1967;0.00334)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		AGGGCAGCAGCCTGAAGAAGAA	0.525000											OREG0013232	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	29					0	0	0.004672	0	0
TXLNA	200081	broad.mit.edu	37	1	32650174	32650174	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:32650174C>T	uc001bui.2	+	4	619	c.554C>T	c.(553-555)CCA>CTA	p.P185L	TXLNA_uc001buj.2_Missense_Mutation_p.P185L	NM_175852	NP_787048	P40222	TXLNA_HUMAN	taxilin	185					cell proliferation|exocytosis	cytoplasm|extracellular region	cytokine activity|high molecular weight B cell growth factor receptor binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CTGAGTACCCCAGAGGAGAAG	0.552000													29	87					0	0	0.004289	0	0
DNALI1	7802	broad.mit.edu	37	1	38027681	38027681	+	Splice_Site	SNP	G	A	A	rs139950326		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:38027681G>A	uc001cbj.2	+	5	653	c.643_splice	c.e5-1	p.I215_splice	DNALI1_uc010oie.1_Splice_Site	NM_003462	NP_003453	O14645	IDLC_HUMAN	dynein, axonemal, light intermediate chain 1						cellular component movement|single fertilization	axonemal dynein complex	microtubule motor activity			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TCTCTCCTCAGATCGCAGAAT	0.547000											OREG0013380	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	48					0	0	0.003163	0	0
SF3A3	10946	broad.mit.edu	37	1	38423935	38423935	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:38423935C>T	uc001cci.2	-	17	1553	c.1429G>A	c.(1429-1431)GAA>AAA	p.E477K	SF3A3_uc010oik.1_Missense_Mutation_p.E424K	NM_006802	NP_006793	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3	477					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TCATATTCTTCCTGAAAAGGA	0.433000													31	20					0	0	0.005524	0	0
HECTD3	79654	broad.mit.edu	37	1	45470324	45470324	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:45470324G>A	uc009vxk.2	-	16	2188	c.2090C>T	c.(2089-2091)TCT>TTT	p.S697F	HECTD3_uc001cmx.3_Missense_Mutation_p.S46F|HECTD3_uc001cmy.3_Missense_Mutation_p.S307F|HECTD3_uc010olh.1_Missense_Mutation_p.S413F	NM_024602	NP_078878	Q5T447	HECD3_HUMAN	HECT domain containing 3	697	HECT.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	ubiquitin-protein ligase activity				0	Acute lymphoblastic leukemia(166;0.155)					GATGAAACGAGAACGGTCCCC	0.562000													39	29					0	0	0.008740	0	0
INADL	10207	broad.mit.edu	37	1	62349916	62349916	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:62349916C>T	uc001dab.2	+	22	3081	c.2967C>T	c.(2965-2967)ATC>ATT	p.I989I	INADL_uc009waf.1_Silent_p.I989I|INADL_uc001daa.2_Silent_p.I989I|INADL_uc001dad.3_Silent_p.I686I|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	989					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CAGGCATGATCCCGAATGATG	0.373000													67	40					0	0	0.003610	0	0
DOCK7	85440	broad.mit.edu	37	1	63099247	63099247	+	Silent	SNP	T	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:63099247T>A	uc001daq.2	-	10	1072	c.1038A>T	c.(1036-1038)CTA>CTT	p.L346L	DOCK7_uc001dan.2_Silent_p.L238L|DOCK7_uc001dao.2_Silent_p.L238L|DOCK7_uc001dap.2_Silent_p.L346L|DOCK7_uc009wah.1_Silent_p.L346L	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	346					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						GGACTTTTTCTAGCTGTCAAA	0.259000													44	108					0	0	0.003214	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74492586	74492586	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:74492586C>T	uc001dfy.3	-	8	1978	c.1786G>A	c.(1786-1788)GCC>ACC	p.A596T	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	596	Potential.									ovary(2)	2						CTTTCACAGGCTTTTTCAAAG	0.303000													18	14					0	0	0.006122	0	0
SLC44A5	204962	broad.mit.edu	37	1	75740649	75740649	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:75740649G>A	uc001dgu.2	-	6	398	c.254C>T	c.(253-255)CCC>CTC	p.P85L	SLC44A5_uc001dgt.2_Missense_Mutation_p.P85L|SLC44A5_uc001dgs.2_Missense_Mutation_p.P43L|SLC44A5_uc001dgr.2_Missense_Mutation_p.P43L|SLC44A5_uc010oqz.1_Missense_Mutation_p.P124L|SLC44A5_uc010ora.1_Missense_Mutation_p.P79L|SLC44A5_uc010orb.1_Intron	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	85	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TCACTCATTGGGAGTGCCCTT	0.478000													31	12					0	0	0.003755	0	0
GLMN	11146	broad.mit.edu	37	1	92752119	92752119	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:92752119C>T	uc001dor.2	-	7	778	c.663G>A	c.(661-663)CTG>CTA	p.L221L	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Silent_p.L221L	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	221					muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		ATTGTGCTGTCAGCAAAGGGC	0.338000									Multiple_Glomus_Tumors_(of_the_Skin)_Familial				29	26					0	0	0.002445	0	0
SNX7	51375	broad.mit.edu	37	1	99167425	99167425	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:99167425A>C	uc010ouc.1	+	7	1143	c.1091A>C	c.(1090-1092)GAA>GCA	p.E364A	SNX7_uc001dsa.2_Missense_Mutation_p.E300A|SNX7_uc010oud.1_Missense_Mutation_p.E309A	NM_015976	NP_057060	Q9UNH6	SNX7_HUMAN	sorting nexin 7 isoform a	300					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		all_epithelial(167;7.64e-07)|all_lung(203;0.0006)|Lung NSC(277;0.00137)		Epithelial(280;0.0521)|all cancers(265;0.0687)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.207)|Colorectal(170;0.234)		TCCAAAGTTGAAGTTTTGACC	0.289000													117	84					0	0	0.003610	0	0
TAF13	6884	broad.mit.edu	37	1	109607282	109607282	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:109607282G>A	uc001dwm.1	-	4	293	c.238C>T	c.(238-240)CGA>TGA	p.R80*		NM_005645	NP_005636	Q15543	TAF13_HUMAN	TBP-associated factor 13	80					transcription elongation from RNA polymerase II promoter|viral reproduction	transcription factor TFIID complex	protein C-terminus binding|sequence-specific DNA binding transcription factor activity				0		all_epithelial(167;0.000102)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0138)|Lung(183;0.0425)|COAD - Colon adenocarcinoma(174;0.113)|Epithelial(280;0.166)|all cancers(265;0.191)|LUSC - Lung squamous cell carcinoma(189;0.228)		ACTTGTACTCGACCTTGTCTT	0.308000													127	223					0	0	0.003610	0	0
OVGP1	5016	broad.mit.edu	37	1	111964242	111964242	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:111964242C>T	uc001eba.2	-	7	718	c.662G>A	c.(661-663)AGG>AAG	p.R221K	OVGP1_uc001eaz.2_Missense_Mutation_p.R183K|OVGP1_uc010owb.1_Intron	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	221					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		TCCTGTGAACCTTTCCCAACT	0.478000													24	64					0	0	0.005443	0	0
PEX11B	8799	broad.mit.edu	37	1	145522632	145522633	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:145522632_145522633CC>GT	uc001eny.1	+	4	511_512	c.493_494CC>GT	c.(493-495)CCA>GTA	p.P165V	NBPF10_uc001emp.3_Intron|PEX11B_uc010oyu.1_Missense_Mutation_p.P151V|ITGA10_uc001enz.1_5'Flank|ITGA10_uc001eoa.2_5'Flank|ITGA10_uc010oyv.1_5'Flank|ITGA10_uc009wiw.2_5'Flank	NM_003846	NP_003837	O96011	PX11B_HUMAN	peroxisomal biogenesis factor 11 beta	165	Gly-rich.				peroxisome fission|signal transduction	integral to peroxisomal membrane	protein binding				0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGGAGGAGTCCCAGGAGGAAGT	0.559000													41	116					0	0	0.004672	0	0
CHD1L	9557	broad.mit.edu	37	1	146759371	146759371	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:146759371C>T	uc001epm.3	+	19	2342	c.2279C>T	c.(2278-2280)GCT>GTT	p.A760V	uc001epp.2_Intron|CHD1L_uc001epn.3_Missense_Mutation_p.A647V|CHD1L_uc010ozo.1_RNA|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Missense_Mutation_p.A666V|CHD1L_uc010ozp.1_Missense_Mutation_p.A479V|CHD1L_uc001epo.3_Missense_Mutation_p.A556V|CHD1L_uc009wji.2_Missense_Mutation_p.A479V	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	760	Macro.				chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					AAGCGATCCGCTGAGCCAAGA	0.433000													67	217					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	1	148889583	148889583	+	RNA	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:148889583G>A	uc009wkv.1	+	7		c.670G>A								Homo sapiens cDNA, FLJ17483.																		CTTTTTAGATGGATGCATGCA	0.343000													5	77					0	0	0.004482	0	0
RPRD2	23248	broad.mit.edu	37	1	150443078	150443078	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:150443078C>T	uc009wlr.2	+	11	1855	c.1654C>T	c.(1654-1656)CCA>TCA	p.P552S	RPRD2_uc010pcc.1_Missense_Mutation_p.P526S|RPRD2_uc001eup.3_Missense_Mutation_p.P526S	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	552	Ser-rich.						protein binding			ovary(1)	1						GAACCCAGTTCCAGCCAGTGA	0.478000													30	124					0	0	0.001786	0	0
POGZ	23126	broad.mit.edu	37	1	151395903	151395903	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:151395903C>T	uc001eyd.1	-	10	1954	c.1648G>A	c.(1648-1650)GAA>AAA	p.E550K	POGZ_uc001eye.1_Missense_Mutation_p.E497K|POGZ_uc010pdb.1_Missense_Mutation_p.E541K|POGZ_uc001eyf.1_Missense_Mutation_p.E497K|POGZ_uc010pdc.1_Missense_Mutation_p.E488K|POGZ_uc009wmv.1_Missense_Mutation_p.E455K|POGZ_uc010pdd.1_Missense_Mutation_p.E41K	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	550	C2H2-type 3.				cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGAACATTTTCCAAGTGGCAC	0.473000													41	197					0	0	0.003214	0	0
SPRR4	163778	broad.mit.edu	37	1	152944577	152944577	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:152944577C>T	uc001fav.1	+	2	274	c.211C>T	c.(211-213)CAG>TAG	p.Q71*		NM_173080	NP_775103	Q96PI1	SPRR4_HUMAN	small proline-rich protein 4	71	Gln-rich.				keratinization|peptide cross-linking	cell cortex					0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCCCTCAGCCCAGCAAGCCTC	0.522000													35	200					0	0	0.002836	0	0
CHRNB2	1141	broad.mit.edu	37	1	154542297	154542297	+	Silent	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:154542297T>C	uc001ffg.2	+	3	504	c.240T>C	c.(238-240)AAT>AAC	p.N80N		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	80	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	TGACCACCAATGTCTGGCTGA	0.572000													181	54					0	0	0.003610	0	0
ZBTB7B	51043	broad.mit.edu	37	1	154987922	154987922	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:154987922C>T	uc001fgk.3	+	3	944	c.786C>T	c.(784-786)TCC>TCT	p.S262S	ZBTB7B_uc009wpa.2_Silent_p.S262S|ZBTB7B_uc001fgj.3_Silent_p.S296S|ZBTB7B_uc010peq.1_Silent_p.S296S|ZBTB7B_uc001fgl.3_Silent_p.S262S	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	262					cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GAACTGCCTCCCCTCCTGAGG	0.652000													29	60					0	0	0.008361	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155922578	155922578	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:155922578G>C	uc001fmt.2	-	15	1943	c.1825C>G	c.(1825-1827)CGA>GGA	p.R609G	ARHGEF2_uc001fmq.2_5'Flank|ARHGEF2_uc001fmr.2_Missense_Mutation_p.R581G|ARHGEF2_uc001fms.2_Missense_Mutation_p.R608G|ARHGEF2_uc001fmu.2_Missense_Mutation_p.R653G	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	609	Potential.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					ACCTTCTCTCGCAGCAGCTCC	0.602000													49	254					0	0	0.003610	0	0
LMNA	4000	broad.mit.edu	37	1	156108345	156108345	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:156108345G>C	uc001fni.2	+	11	2014	c.1765G>C	c.(1765-1767)GGG>CGG	p.G589R	LMNA_uc001fnf.1_3'UTR|LMNA_uc001fnh.2_Missense_Mutation_p.G559R|LMNA_uc009wro.1_Missense_Mutation_p.G589R|LMNA_uc001fnj.2_3'UTR|LMNA_uc001fnk.2_Missense_Mutation_p.G490R|LMNA_uc010pha.1_3'UTR|LMNA_uc010phb.1_RNA	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	589	Tail.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					CGTGCTGTGCGGGACCTGCGG	0.697000									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				21	286					0	0	0.001882	0	0
TTC24	164118	broad.mit.edu	37	1	156555590	156555590	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:156555590G>A	uc009wsc.1	+	7	842	c.702G>A	c.(700-702)GGG>GGA	p.G234G		NM_001105669	NP_001099139	A2A3L6	TTC24_HUMAN	tetratricopeptide repeat domain 24	514							binding			pancreas(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCTGCAGAGGGACAGTCCTCG	0.517000													61	298					0	0	0.003610	0	0
INSRR	3645	broad.mit.edu	37	1	156811287	156811287	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:156811287G>A	uc010pht.1	-	21	3815	c.3561C>T	c.(3559-3561)ACC>ACT	p.T1187T	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1187	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GTTCTGCCAGGGTCACAATCT	0.612000													213	62					0	0	0.003610	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156909447	156909448	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:156909447_156909448GG>AA	uc001fqo.2	-	36	4908_4909	c.3868_3869CC>TT	c.(3868-3870)CCA>TTA	p.P1290L	ARHGEF11_uc010phu.1_Missense_Mutation_p.P706L|ARHGEF11_uc001fqn.2_Missense_Mutation_p.P1330L	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	1290					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TCTGGTCCTTGGGGGTAGGTGT	0.564000													203	38					0	0	0.004672	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517501	158517501	+	Missense_Mutation	SNP	C	A	A	rs138226850	byFrequency	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:158517501C>A	uc010pil.1	-	1	395	c.395G>T	c.(394-396)TGT>TTT	p.C132F		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	132	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TAGTGGATTACAAATGGCTAC	0.468000													57	36					3.21867e-24	4.6635e-24	0.003610	1	0
OR6Y1	391112	broad.mit.edu	37	1	158517822	158517822	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:158517822C>T	uc010pil.1	-	1	74	c.74G>A	c.(73-75)CGA>CAA	p.R25Q		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GAAGGCTGGTCGTGTTGGAAA	0.453000													50	71					0	0	0.003610	0	0
TMCO1	54499	broad.mit.edu	37	1	165697279	165697279	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:165697279G>A	uc001gdj.3	-	7	697	c.548C>T	c.(547-549)CCT>CTT	p.P183L	TMCO1_uc001gdl.3_Missense_Mutation_p.P99L|TMCO1_uc001gdm.3_Missense_Mutation_p.P99L|TMCO1_uc001gdk.3_Missense_Mutation_p.P171L|TMCO1_uc001gdn.3_RNA	NM_019026	NP_061899	Q9UM00	TMCO1_HUMAN	transmembrane and coiled-coil domains 1	183	Poly-Pro.					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				central_nervous_system(1)	1	all_hematologic(923;0.048)|Acute lymphoblastic leukemia(8;0.155)					CTTCCCAGAAGGAGGTGGTGG	0.468000													49	375					0	0	0.003610	0	0
ADCY10	55811	broad.mit.edu	37	1	167778983	167778983	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:167778983C>T	uc001ger.2	-	33	5063	c.4765G>A	c.(4765-4767)GTA>ATA	p.V1589I	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Missense_Mutation_p.V1497I|ADCY10_uc010plj.1_Missense_Mutation_p.V1436I	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1589					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TGAATGTTTACCCTGCCTGCT	0.378000													190	69					0	0	0.003610	0	0
ANKRD45	339416	broad.mit.edu	37	1	173596225	173596225	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:173596225C>T	uc001gja.1	-	4	631	c.570G>A	c.(568-570)GGG>GGA	p.G190G		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	206											0						TAAGGAGTTTCCCTGATCCCT	0.353000													73	63					0	0	0.003610	0	0
TNR	7143	broad.mit.edu	37	1	175360466	175360466	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:175360466C>T	uc001gkp.1	-	5	1546	c.1465G>A	c.(1465-1467)GAA>AAA	p.E489K	TNR_uc009wwu.1_Missense_Mutation_p.E489K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	489	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CGGGCCTGTTCTTTCAGAGCC	0.562000													41	85					0	0	0.003610	0	0
RASAL2	9462	broad.mit.edu	37	1	178420721	178420721	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:178420721C>T	uc001glr.2	+	8	1324	c.1199C>T	c.(1198-1200)GCT>GTT	p.A400V	RASAL2_uc001glq.2_Missense_Mutation_p.A548V|RASAL2_uc009wxc.2_5'Flank	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	400	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						TTTATCAAAGCTTTGTATGAG	0.388000													41	91					0	0	0.003610	0	0
HMCN1	83872	broad.mit.edu	37	1	186106694	186106694	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:186106694C>T	uc001grq.1	+	88	13876	c.13647C>T	c.(13645-13647)ATC>ATT	p.I4549I	HMCN1_uc001grs.1_Silent_p.I118I	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4549	TSP type-1 1.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GAAAAGGCATCCAAAAGAGGA	0.473000													28	24					0	0	0.004656	0	0
HMCN1	83872	broad.mit.edu	37	1	186120332	186120332	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:186120332G>A	uc001grq.1	+	94	14838	c.14609G>A	c.(14608-14610)GGT>GAT	p.G4870D	HMCN1_uc001grs.1_Missense_Mutation_p.G439D	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4870					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCCCCAATAGGTGGGCCCCAG	0.393000													75	57					0	0	0.003610	0	0
ASPM	259266	broad.mit.edu	37	1	197069625	197069625	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:197069625C>T	uc001gtu.2	-	18	9013	c.8756G>A	c.(8755-8757)AGA>AAA	p.R2919K	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.R767K	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2919	IQ 33.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TCCTTTACTTCTAGCTTGAAT	0.299000													22	24					0	0	0.002780	0	0
KIF14	9928	broad.mit.edu	37	1	200572356	200572356	+	Silent	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:200572356T>C	uc010ppk.1	-	10	2416	c.1977A>G	c.(1975-1977)ACA>ACG	p.T659T	KIF14_uc010ppj.1_Silent_p.T168T	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	659					microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						ATACTTGCCATGTAAGAACAG	0.323000													24	32					0	0	0.002780	0	0
REN	5972	broad.mit.edu	37	1	204125925	204125925	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:204125925C>T	uc001haq.2	-	7	743	c.699_splice	c.e7-1	p.E233_splice		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein						angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	TTGGGAATTCCTAAAGGAAAG	0.527000													65	50					0	0	0.003610	0	0
LRRN2	10446	broad.mit.edu	37	1	204587774	204587775	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:204587774_204587775GG>AA	uc001hbe.1	-	3	1734_1735	c.1346_1347CC>TT	c.(1345-1347)GCC>GTT	p.A449V	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.A449V|LRRN2_uc009xbf.1_Missense_Mutation_p.A449V|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	449	Ig-like C2-type.|Extracellular (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GTTCGGGTTCGGCCAGTGCCCG	0.639000													20	37					0	0	0.004672	0	0
CNTN2	6900	broad.mit.edu	37	1	205041102	205041102	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:205041102G>A	uc001hbr.2	+	20	2841	c.2572G>A	c.(2572-2574)GAA>AAA	p.E858K	CNTN2_uc001hbq.1_Missense_Mutation_p.E749K|CNTN2_uc001hbs.2_Missense_Mutation_p.E646K	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	858	Fibronectin type-III 3.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TGGGGACAAAGAAGCAGCTGC	0.627000													20	24					0	0	0.001882	0	0
TMEM81	388730	broad.mit.edu	37	1	205053200	205053200	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:205053200G>A	uc001hbt.2	-	1	389	c.249C>T	c.(247-249)ACC>ACT	p.T83T		NM_203376	NP_976310	Q6P7N7	TMM81_HUMAN	transmembrane protein 81 precursor	83	Ig-like.|Extracellular (Potential).					integral to membrane					0	all_cancers(21;0.144)|Breast(84;0.0437)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			AGATCCAGTTGGTCAGACATT	0.502000													70	49					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	216017711	216017711	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:216017711G>A	uc001hku.1	-	46	9570	c.9183C>T	c.(9181-9183)CTC>CTT	p.L3061L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3061	Fibronectin type-III 17.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CAGTCTTGTAGAGCTTATTAT	0.393000										HNSCC(13;0.011)			54	34					0	0	0.003610	0	0
LYPLAL1	127018	broad.mit.edu	37	1	219366544	219366544	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:219366544G>T	uc001hlq.3	+	3	353	c.312G>T	c.(310-312)TTG>TTT	p.L104F	LYPLAL1_uc001hlr.3_Missense_Mutation_p.L88F|LYPLAL1_uc001hls.3_Intron|LYPLAL1_uc001hlt.3_Intron|LYPLAL1_uc009xds.2_Intron	NM_138794	NP_620149	Q5VWZ2	LYPL1_HUMAN	lysophospholipase-like 1	104						cytoplasm	lysophospholipase activity				0				GBM - Glioblastoma multiforme(131;0.055)|all cancers(67;0.105)|OV - Ovarian serous cystadenocarcinoma(81;0.116)		TTACTGATTTGATTGATGAAG	0.338000													50	21					1.22102e-19	1.7574e-19	0.003610	1	0
TRIM17	51127	broad.mit.edu	37	1	228596250	228596250	+	Silent	SNP	G	A	A	rs1749955		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:228596250G>A	uc001hsu.2	-	7	1471	c.1086C>T	c.(1084-1086)GAC>GAT	p.D362D	TRIM11_uc001hss.2_5'Flank|TRIM11_uc010pvx.1_5'Flank|TRIM11_uc001hst.1_5'Flank|TRIM17_uc001hsv.2_Silent_p.D362D|TRIM17_uc001hsw.2_Silent_p.D335D	NM_016102	NP_057186	Q9Y577	TRI17_HUMAN	tripartite motif-containing 17 isoform 1	362	B30.2/SPRY.				protein autoubiquitination	intracellular	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Prostate(94;0.0724)				CCCACAACGCGTCCCCGGTGA	0.632000													12	59					0	0	0.000978	0	0
CNST	163882	broad.mit.edu	37	1	246797225	246797225	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:246797225G>A	uc001ibp.2	+	5	995	c.617_splice	c.e5-1	p.Y206_splice	CNST_uc001ibo.3_Splice_Site_p.Y206_splice	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1						positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						GTTCTATTCAGATGAGAAAGC	0.348000													29	96					0	0	0.008361	0	0
OR2G3	81469	broad.mit.edu	37	1	247769226	247769226	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:247769226C>T	uc010pyz.1	+	1	339	c.339C>T	c.(337-339)ATC>ATT	p.I113I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CTGAATGTATCCTCTTGGCTG	0.488000													172	97					0	0	0.003610	0	0
OR14A16	284532	broad.mit.edu	37	1	247978344	247978344	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:247978344C>T	uc001idm.1	-	1	688	c.688G>A	c.(688-690)GAA>AAA	p.E230K		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GACTGGCCTTCTGTGGAAGGG	0.408000													21	31					0	0	0.002780	0	0
TUBB8	347688	broad.mit.edu	37	10	93374	93374	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:93374G>A	uc001ifi.2	-	4	958	c.958C>T	c.(958-960)CGC>TGC	p.R320C	TUBB8_uc009xhe.2_Missense_Mutation_p.R283C|TUBB8_uc010pzs.1_Missense_Mutation_p.R248C	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	320					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		ATGGGCATGCGACCCCTGAAA	0.522000													29	33					0	0	0.007291	0	0
CALML5	51806	broad.mit.edu	37	10	5541325	5541325	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:5541325C>T	uc001iic.2	-	1	209	c.77G>A	c.(76-78)GGC>GAC	p.G26D		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	26	1.|EF-hand 1.				epidermis development|signal transduction		calcium ion binding|protein binding				0						ATTGATGGTGCCGTTTCCATC	0.627000													23	36					0	0	0.003954	0	0
CUBN	8029	broad.mit.edu	37	10	16975241	16975241	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:16975241A>T	uc001ioo.2	-	40	6021	c.5969T>A	c.(5968-5970)TTT>TAT	p.F1990Y		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1990	CUB 14.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGAGAAGAGAAACACGGGTGC	0.522000													16	20					0	0	0.003163	0	0
STAM	8027	broad.mit.edu	37	10	17737150	17737150	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:17737150G>A	uc001ipj.1	+	7	854	c.638G>A	c.(637-639)CGA>CAA	p.R213Q	STAM_uc010qcf.1_Missense_Mutation_p.R102Q|STAM_uc009xjw.1_5'UTR	NM_003473	NP_003464	Q92783	STAM1_HUMAN	signal transducing adaptor molecule 1	213	SH3.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	SH3/SH2 adaptor activity			large_intestine(1)|ovary(1)	2						CATGAAGGCCGAAAAGTTCGT	0.393000													20	23					0	0	0.007413	0	0
SLC39A12	221074	broad.mit.edu	37	10	18242303	18242303	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:18242303A>T	uc001ipo.2	+	2	371	c.98A>T	c.(97-99)GAT>GTT	p.D33V	SLC39A12_uc001ipn.2_Missense_Mutation_p.D33V|SLC39A12_uc001ipp.2_Missense_Mutation_p.D33V|SLC39A12_uc010qck.1_Intron	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	33	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TCAGCCCAGGATAGCAGAAGC	0.527000													14	30					0	0	0.002450	0	0
PLXDC2	84898	broad.mit.edu	37	10	20357117	20357117	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:20357117G>A	uc001iqg.1	+	4	1127	c.490G>A	c.(490-492)GAT>AAT	p.D164N	PLXDC2_uc001iqh.1_Missense_Mutation_p.D115N	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	164	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TCTGTCCTTCGATTTTCCATT	0.393000													11	20					0	0	0.008291	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702538	27702538	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:27702538G>A	uc001itu.2	-	1	760	c.642C>T	c.(640-642)GTC>GTT	p.V214V		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	214					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CGCTGTAGGAGACCACCAGAA	0.617000													20	17					0	0	0.007413	0	0
ARMC4	55130	broad.mit.edu	37	10	28229688	28229688	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:28229688G>A	uc009xky.2	-	13	1888	c.1790C>T	c.(1789-1791)TCG>TTG	p.S597L	ARMC4_uc010qds.1_Missense_Mutation_p.S122L|ARMC4_uc010qdt.1_Missense_Mutation_p.S289L|ARMC4_uc001itz.2_Missense_Mutation_p.S597L|ARMC4_uc010qdu.1_Missense_Mutation_p.S289L	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	597							binding			ovary(4)|skin(2)	6						ATACAGACTCGATTGGGCAGG	0.443000													21	24					0	0	0.008871	0	0
ARMC4	55130	broad.mit.edu	37	10	28284008	28284008	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:28284008C>T	uc009xky.2	-	2	162	c.64G>A	c.(64-66)GAA>AAA	p.E22K	ARMC4_uc001itz.2_Missense_Mutation_p.E22K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	22							binding			ovary(4)|skin(2)	6						GGGGTGATTTCGAGGATTCCA	0.453000													11	22					0	0	0.008291	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													5	25					0	0	0.000602	0	0
TACR2	6865	broad.mit.edu	37	10	71164625	71164626	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:71164625_71164626CC>TT	uc001jpn.2	-	5	1748_1749	c.1153_1154GG>AA	c.(1153-1155)GGG>AAG	p.G385K	TACR2_uc001jpm.2_Missense_Mutation_p.G173K	NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	385	Cytoplasmic (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	caaaccatacccaaaccatagc	0.282000													6	8					0	0	0.004672	0	0
CDH23	64072	broad.mit.edu	37	10	73574959	73574959	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:73574959A>C	uc001jrx.3	+	68	10366	c.9989A>C	c.(9988-9990)GAA>GCA	p.E3330A	CDH23_uc001jsg.3_Missense_Mutation_p.E1090A|CDH23_uc001jsh.3_Missense_Mutation_p.E1055A|CDH23_uc001jsi.3_Missense_Mutation_p.E1055A|CDH23_uc001jsj.3_Missense_Mutation_p.E227A|CDH23_uc010qjr.1_Missense_Mutation_p.E192A	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	3330	Cytoplasmic (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GCCCGCACAGAATCCGCCAAA	0.632000													8	4					0	0	0.003080	0	0
OIT3	170392	broad.mit.edu	37	10	74671531	74671531	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:74671531G>A	uc001jte.1	+	5	942	c.724G>A	c.(724-726)GAG>AAG	p.E242K	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	242						nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					CCTTGGATCTGAGAAAGGCTA	0.517000													25	30					0	0	0.003954	0	0
TTC18	118491	broad.mit.edu	37	10	75059363	75059363	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:75059363C>T	uc009xrc.2	-	14	1648	c.1527G>A	c.(1525-1527)AAG>AAA	p.K509K	TTC18_uc001jty.2_Silent_p.K509K|TTC18_uc009xrd.1_Silent_p.K323K|TTC18_uc001jtx.2_5'Flank	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	509							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TGGCACTTGCCTTCTGAGCTC	0.383000													13	20					0	0	0.004007	0	0
ANXA7	310	broad.mit.edu	37	10	75158049	75158049	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:75158049G>A	uc001jtz.2	-	3	222	c.149C>T	c.(148-150)CCA>CTA	p.P50L	ANXA7_uc001jua.2_Missense_Mutation_p.P50L|ANXA7_uc001jub.2_Missense_Mutation_p.P10L|ANXA7_uc010qki.1_Missense_Mutation_p.P10L|ANXA7_uc009xre.2_Intron|ANXA7_uc009xrf.1_Missense_Mutation_p.P50L	NM_004034	NP_004025	P20073	ANXA7_HUMAN	annexin VII isoform 2	50	Repeat-rich region.						calcium ion binding|calcium-dependent phospholipid binding|calcium-dependent protein binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					GCCACTACTTGGCACTTGTGG	0.592000													11	9					0	0	0.001368	0	0
MYST4	23522	broad.mit.edu	37	10	76719776	76719776	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr10:76719776G>A	uc001jwn.1	+	4	1163	c.670G>A	c.(670-672)GAA>AAA	p.E224K	MYST4_uc001jwm.1_Missense_Mutation_p.E224K|MYST4_uc001jwo.1_Missense_Mutation_p.E224K|MYST4_uc001jwp.1_Missense_Mutation_p.E224K	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	224	PHD-type 1.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					GGGGACTAAAGAATCAAATCG	0.373000			T	CREBBP	AML								26	34					0	0	0.002445	0	0
OR51B5	282763	broad.mit.edu	37	11	5364330	5364330	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:5364330A>T	uc001map.1	-	1	425	c.425T>A	c.(424-426)ATT>AAT	p.I142N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.I142N	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCCAGCCCAATCTTCACTAC	0.453000													28	47					0	0	0.007291	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444247	5444247	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:5444247C>T	uc010qzd.1	+	1	817	c.817C>T	c.(817-819)CTG>TTG	p.L273L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	273	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCTCTCCACTGGTCCATGT	0.488000													23	40					0	0	0.005443	0	0
OR52H1	390067	broad.mit.edu	37	11	5566205	5566205	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:5566205G>A	uc010qzh.1	-	1	549	c.549C>T	c.(547-549)CCC>CCT	p.P183P	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGTATGTGTGGGGTATGATGC	0.493000													19	41					0	0	0.008871	0	0
AMPD3	272	broad.mit.edu	37	11	10516460	10516460	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:10516460C>T	uc001mio.1	+	8	1484	c.1149C>T	c.(1147-1149)TTC>TTT	p.F383F	AMPD3_uc010rbz.1_Silent_p.F224F|AMPD3_uc001min.1_Silent_p.F392F|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Silent_p.F390F|AMPD3_uc009yfy.2_Silent_p.F383F	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	383					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		GGCAGACATTCCACCGCTTTG	0.542000													26	64					0	0	0.005443	0	0
FJX1	24147	broad.mit.edu	37	11	35640989	35640989	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:35640989C>T	uc001mwh.2	+	1	1255	c.805C>T	c.(805-807)CGG>TGG	p.R269W		NM_014344	NP_055159	Q86VR8	FJX1_HUMAN	four jointed box 1 precursor	269						extracellular space					0	all_cancers(35;0.177)|all_lung(20;0.0238)|Lung NSC(22;0.0494)|all_epithelial(35;0.0739)	all_hematologic(20;0.107)				GCGCCCCCTCCGGGATGCCGG	0.672000													12	9					0	0	0.002450	0	0
OR4C3	256144	broad.mit.edu	37	11	48347413	48347413	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:48347413G>A	uc010rhv.1	+	1	921	c.921G>A	c.(919-921)TTG>TTA	p.L307L		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CACCTATGTTGAATCCACTCA	0.343000													5	71					0	0	0.001168	0	0
OR4C11	219429	broad.mit.edu	37	11	55371520	55371520	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:55371520G>A	uc010rii.1	-	1	330	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGAGGACAAAGATCTCCATGC	0.433000													38	19					0	0	0.006230	0	0
OR5D13	390142	broad.mit.edu	37	11	55541105	55541105	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:55541105C>T	uc010ril.1	+	1	192	c.192C>T	c.(190-192)TTC>TTT	p.F64F		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TGTGCTTTTTCCTTAGTCACT	0.398000													20	53					0	0	0.001523	0	0
APLNR	187	broad.mit.edu	37	11	57003368	57003368	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:57003368G>A	uc001njo.2	-	1	1560	c.1111C>T	c.(1111-1113)CCC>TCC	p.P371S	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	371	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						TGGCTGTAGGGGATGGATTTC	0.622000													28	22					0	0	0.007291	0	0
PRG2	5553	broad.mit.edu	37	11	57157407	57157407	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:57157407G>A	uc001njz.2	-	1	38	c.11C>T	c.(10-12)CCC>CTC	p.P4L	PRG2_uc001njw.1_RNA|PRG2_uc001njx.1_RNA|PRG2_uc001njy.1_RNA|PRG2_uc001nka.2_Missense_Mutation_p.P4L|PRG2_uc001nkb.2_Missense_Mutation_p.P4L|PRG2_uc001nkd.2_Missense_Mutation_p.P4L|PRG2_uc001nkc.2_Missense_Mutation_p.P4L|PRG2_uc001nke.2_Missense_Mutation_p.P284L	NM_002728	NP_002719	P13727	PRG2_HUMAN	proteoglycan 2 preproprotein	4					defense response to bacterium|immune response	extracellular region|transport vesicle	heparin binding|sugar binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Sargramostim(DB00020)	CAGAAGTAAGGGGAGTTTCAT	0.338000													47	32					0	0	0.003610	0	0
STX3	6809	broad.mit.edu	37	11	59559649	59559649	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:59559649G>A	uc001nog.2	+	6	617	c.427G>A	c.(427-429)GAA>AAA	p.E143K	STX3_uc010rkx.1_Missense_Mutation_p.E143K|STX3_uc010rky.1_Missense_Mutation_p.E46K|STX3_uc009ymt.1_Missense_Mutation_p.E46K	NM_004177	NP_004168	Q13277	STX3_HUMAN	syntaxin 3	143	Cytoplasmic (Potential).				cellular response to oxidative stress|intracellular protein transport|neuron projection development|neurotransmitter transport	apical plasma membrane|azurophil granule|cell-cell junction|growth cone|integral to membrane|plasma membrane enriched fraction|SNARE complex|specific granule	arachidonic acid binding|SNAP receptor activity			ovary(2)	2						GGACTTCCGAGAACGCAGCAA	0.517000													20	14					0	0	0.001523	0	0
PLCB3	5331	broad.mit.edu	37	11	64021914	64021914	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:64021914C>T	uc001nzb.2	+	2	127	c.127C>T	c.(127-129)CTG>TTG	p.L43L	PLCB3_uc009ypg.1_Silent_p.L43L|PLCB3_uc009yph.1_Intron|PLCB3_uc009ypi.2_Silent_p.L43L	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	43					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						CCTGGTGACCCTGCGTGTGGA	0.667000													33	116					0	0	0.005524	0	0
MALAT1	378938	broad.mit.edu	37	11	65271744	65271744	+	RNA	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:65271744G>A	uc010roh.1	+	1		c.6512G>A			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GAATTTGGAGGGATGGGAGGA	0.423000													16	14					0	0	0.004990	0	0
LTBP3	4054	broad.mit.edu	37	11	65310921	65310921	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:65310921G>A	uc001oej.2	-	17	2722	c.2453C>T	c.(2452-2454)TCC>TTC	p.S818F	LTBP3_uc001oef.2_5'UTR|LTBP3_uc001oeg.2_5'UTR|LTBP3_uc001oeh.2_Missense_Mutation_p.S248F|LTBP3_uc010roi.1_Missense_Mutation_p.S701F|LTBP3_uc001oei.2_Missense_Mutation_p.S818F|LTBP3_uc010roj.1_Missense_Mutation_p.S519F|LTBP3_uc010rok.1_Missense_Mutation_p.S729F	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	818	Cys-rich.|EGF-like 7; calcium-binding (Potential).					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						CCGGTCCCTGGACAGATGGTA	0.617000													28	20					0	0	0.005443	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65347602	65347602	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:65347602C>T	uc001oeo.3	+	5	628	c.363C>T	c.(361-363)GCC>GCT	p.A121A	EHBP1L1_uc001oep.1_5'Flank	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	121										central_nervous_system(1)	1						TGGACCTGGCCCGCCATGCAG	0.657000													22	8					0	0	0.001523	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65350741	65350741	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:65350741C>T	uc001oeo.3	+	9	2863	c.2598C>T	c.(2596-2598)ACC>ACT	p.T866T	EHBP1L1_uc001oep.1_Intron	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	866	Glu-rich.									central_nervous_system(1)	1						TACTGATGACCCGTAAGACAG	0.562000													18	11					0	0	0.001523	0	0
SNX32	254122	broad.mit.edu	37	11	65618239	65618239	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:65618239G>A	uc001ofr.2	+	6	643	c.516G>A	c.(514-516)AAG>AAA	p.K172K		NM_152760	NP_689973	Q86XE0	SNX32_HUMAN	sorting nexin 6B	172					cell communication|protein transport		phosphatidylinositol binding				0				READ - Rectum adenocarcinoma(159;0.171)		TCCGGGGGAAGAACAGGAAGG	0.592000													8	20					0	0	0.008291	0	0
PACS1	55690	broad.mit.edu	37	11	66002846	66002846	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:66002846G>A	uc001oha.1	+	18	2313	c.2179G>A	c.(2179-2181)GAA>AAA	p.E727K	PACS1_uc010rou.1_Missense_Mutation_p.E263K	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	727					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						TCCCGTGGCCGAAGCCATGCT	0.517000													26	15					0	0	0.001786	0	0
MRGPRD	116512	broad.mit.edu	37	11	68748403	68748403	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:68748403G>A	uc010rqf.1	-	1	53	c.53C>T	c.(52-54)TCC>TTC	p.S18F		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	18	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GCTCCCTCTGGAATAGTTTAG	0.552000													35	16					0	0	0.003755	0	0
RSF1	51773	broad.mit.edu	37	11	77412662	77412662	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:77412662C>T	uc001oyn.2	-	6	1732	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K	RSF1_uc001oym.2_Missense_Mutation_p.E286K	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	538					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			AGAGAAGTTTCCATTTCTGGA	0.413000													98	69					0	0	0.003610	0	0
CCDC89	220388	broad.mit.edu	37	11	85397041	85397041	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:85397041G>A	uc001pau.1	-	1	280	c.133C>T	c.(133-135)CTG>TTG	p.L45L		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	45	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				GCTTCCCTCAGACCGTCCAGT	0.552000													22	2					0	0	0.001882	0	0
PGR	5241	broad.mit.edu	37	11	100909930	100909930	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:100909930C>T	uc001pgh.2	-	8	3462	c.2719G>A	c.(2719-2721)GAA>AAA	p.E907K	PGR_uc001pgg.2_Missense_Mutation_p.E288K|PGR_uc001pgi.2_Missense_Mutation_p.E805K|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	907	Steroid-binding.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	GACATCATTTCTGGAAATTCA	0.378000													29	6					0	0	0.006320	0	0
VWA5A	4013	broad.mit.edu	37	11	124016071	124016071	+	Splice_Site	SNP	G	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:124016071G>T	uc001pzu.2	+	18	2490	c.2281_splice	c.e18+1	p.G761_splice	VWA5A_uc001pzt.2_Splice_Site_p.G761_splice	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1											upper_aerodigestive_tract(1)|ovary(1)	2						GCCCATGCAGGTAGGAGCACA	0.577000													15	37					6.31663e-08	9.03167e-08	0.003163	1	0
ST14	6768	broad.mit.edu	37	11	130060463	130060463	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:130060463G>A	uc001qfw.2	+	7	942	c.749G>A	c.(748-750)GGG>GAG	p.G250E	ST14_uc010sca.1_Missense_Mutation_p.G60E	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	250	Extracellular (Potential).|CUB 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	GCCCTGCGGGGGGACGCCGAC	0.697000													13	2					0	0	0.003163	0	0
FGF23	8074	broad.mit.edu	37	12	4479941	4479941	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:4479941G>A	uc001qmq.1	-	3	470	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	108					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity	p.F108F(1)		ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TCTCCGGGTCGAAATAGTGCT	0.617000													52	59					0	0	0.003610	0	0
DYRK4	8798	broad.mit.edu	37	12	4721873	4721873	+	Missense_Mutation	SNP	C	T	T	rs141423818	by1000genomes	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:4721873C>T	uc001qmx.2	+	12	1470	c.1310C>T	c.(1309-1311)TCG>TTG	p.S437L	DYRK4_uc009zeh.1_Missense_Mutation_p.S552L|DYRK4_uc001qmy.1_Missense_Mutation_p.S437L|DYRK4_uc001qmz.1_Missense_Mutation_p.S151L|DYRK4_uc001qna.1_Missense_Mutation_p.S74L|DYRK4_uc010ser.1_Missense_Mutation_p.S74L	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	437						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			TGTCATCACTCGAGCAGAAAA	0.468000													45	41					0	0	0.003610	0	0
ACRBP	84519	broad.mit.edu	37	12	6753341	6753341	+	Nonsense_Mutation	SNP	A	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:6753341A>C	uc001qpu.1	-	5	954	c.906T>G	c.(904-906)TAT>TAG	p.Y302*	ACRBP_uc010sfg.1_Nonsense_Mutation_p.Y269*	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	302						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						AGTTCTCATCATATATTTCAT	0.468000													36	54					0	0	0.006999	0	0
APOBEC1	339	broad.mit.edu	37	12	7805422	7805422	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:7805422G>A	uc001qtb.2	-	3	88	c.54C>T	c.(52-54)ATC>ATT	p.I18I	APOBEC1_uc001qtc.2_5'UTR|APOBEC1_uc010sgf.1_Silent_p.I18I	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	18					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						CCCAGGGTTCGATTCTTCTCC	0.448000													34	39					0	0	0.004878	0	0
PZP	5858	broad.mit.edu	37	12	9345254	9345254	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:9345254G>A	uc001qvl.2	-	12	1365	c.1336C>T	c.(1336-1338)CGT>TGT	p.R446C	PZP_uc009zgl.2_Missense_Mutation_p.R315C	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						GAGAAAACACGATTTGCAGTG	0.488000													49	46					0	0	0.003610	0	0
TAS2R7	50837	broad.mit.edu	37	12	10954813	10954813	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:10954813G>A	uc001qyv.2	-	1	414	c.357C>T	c.(355-357)TTC>TTT	p.F119F		NM_023919	NP_076408	Q9NYW3	TA2R7_HUMAN	taste receptor, type 2, member 7	119	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						TCATCCAGAGGAAAAGTGGGT	0.418000													10	18					0	0	0.006214	0	0
ATF7IP	55729	broad.mit.edu	37	12	14578384	14578384	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:14578384C>T	uc001rbw.2	+	2	1693	c.1535C>T	c.(1534-1536)TCG>TTG	p.S512L	ATF7IP_uc010shs.1_Missense_Mutation_p.S512L|ATF7IP_uc001rbu.2_Missense_Mutation_p.S512L|ATF7IP_uc001rbv.1_Missense_Mutation_p.S512L|ATF7IP_uc001rbx.2_Missense_Mutation_p.S512L|ATF7IP_uc010sht.1_Missense_Mutation_p.S512L|ATF7IP_uc001rby.3_Missense_Mutation_p.S512L|ATF7IP_uc001rbz.1_Missense_Mutation_p.S512L|ATF7IP_uc001rca.2_Missense_Mutation_p.S512L|ATF7IP_uc001rcb.2_Missense_Mutation_p.S123L	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	512	Glu-rich.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						GAAGTTATATCGCAAAATGAA	0.323000													29	26					0	0	0.005443	0	0
BCAT1	586	broad.mit.edu	37	12	24970974	24970974	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:24970974C>G	uc001rgd.3	-	11	1571	c.1129G>C	c.(1129-1131)GAA>CAA	p.E377Q	BCAT1_uc001rgc.2_Missense_Mutation_p.E376Q|BCAT1_uc010six.1_Missense_Mutation_p.E389Q|BCAT1_uc010siy.1_Missense_Mutation_p.E340Q|BCAT1_uc001rge.3_Missense_Mutation_p.E316Q	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	377					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	TCGCTCTCTTCTCTTCCATAC	0.408000													40	23					0	0	0.002222	0	0
ABCD2	225	broad.mit.edu	37	12	39973421	39973421	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:39973421C>T	uc001rmb.2	-	8	2219	c.1793G>A	c.(1792-1794)GGA>GAA	p.G598E		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	598	ABC transporter.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						AGCATCCCATCCTTAAGaaaa	0.313000													13	50					0	0	0.001855	0	0
ANP32D	23519	broad.mit.edu	37	12	48866516	48866516	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:48866516C>T	uc010slt.1	+	1	69	c.69C>T	c.(67-69)TTC>TTT	p.F23F		NM_012404	NP_036536	O95626	AN32D_HUMAN	acidic nuclear phosphoprotein 32D	23	LRR 1.									ovary(1)|central_nervous_system(1)	2						AAGAACTTTTCCTGGACAACA	0.453000													33	81					0	0	0.004878	0	0
KRT1	3848	broad.mit.edu	37	12	53071150	53071150	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:53071150C>T	uc001sau.1	-	5	1137	c.1078G>A	c.(1078-1080)GAT>AAT	p.D360N	KRT1_uc001sav.1_Missense_Mutation_p.D360N	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	360	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						TGGGCTATATCCTCGTACTGG	0.512000													13	34					0	0	0.002450	0	0
KRT77	374454	broad.mit.edu	37	12	53085114	53085114	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:53085114G>A	uc001saw.2	-	9	1601	c.1572C>T	c.(1570-1572)AGC>AGT	p.S524S	KRT77_uc009zmi.2_Silent_p.S282S	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	524	Tail.					keratin filament	structural molecule activity			ovary(1)	1						ctccgcggtagcttcttccgc	0.055000													5	2					0	0	0.000602	0	0
SP7	121340	broad.mit.edu	37	12	53722058	53722058	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:53722058C>T	uc001sct.2	-	2	1275	c.1168G>A	c.(1168-1170)GAG>AAG	p.E390K	SP7_uc001scu.2_Missense_Mutation_p.E372K|SP7_uc001scv.2_Missense_Mutation_p.E390K	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix	390					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCCCCCAGCTCCTTGGGGCCA	0.687000											OREG0021867	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	18					0	0	0.001168	0	0
CALCOCO1	57658	broad.mit.edu	37	12	54105760	54105760	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:54105760A>C	uc001sef.2	-	15	2188	c.2044T>G	c.(2044-2046)TTC>GTC	p.F682V	CALCOCO1_uc001see.2_Missense_Mutation_p.F207V|CALCOCO1_uc010som.1_Missense_Mutation_p.F597V|CALCOCO1_uc010son.1_Missense_Mutation_p.F559V|CALCOCO1_uc001seh.2_3'UTR|CALCOCO1_uc009znd.2_Missense_Mutation_p.F681V|CALCOCO1_uc001seg.2_Missense_Mutation_p.F507V	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	682	C-terminal AD (CTNNB1 binding site) (By similarity).				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						TGGGTGCTGAAAAAGAAGTGT	0.393000													6	20					0	0	0.001984	0	0
NFE2	4778	broad.mit.edu	37	12	54686206	54686206	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:54686206C>T	uc009znk.2	-	2	1584	c.1074G>A	c.(1072-1074)GGG>GGA	p.G358G	NFE2_uc001sfq.2_Silent_p.G358G|NFE2_uc001sfr.3_Silent_p.G358G|NFE2_uc009znl.2_Silent_p.G358G	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	358					blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						GGAAGATGGTCCCATCGGCAG	0.567000													10	32					0	0	0.006214	0	0
NEUROD4	58158	broad.mit.edu	37	12	55421210	55421210	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:55421210C>T	uc001sgp.3	+	2	1365	c.987C>T	c.(985-987)TTC>TTT	p.F329F		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	329					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						ATACAGTCTTCACTGAGTGAG	0.428000													79	178					0	0	0.003610	0	0
OR6C2	341416	broad.mit.edu	37	12	55846759	55846759	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:55846759C>T	uc001sgz.1	+	1	762	c.762C>T	c.(760-762)ATC>ATT	p.I254I		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GAAGCTGCATCTTCATCTATA	0.423000													48	29					0	0	0.003610	0	0
SILV	6490	broad.mit.edu	37	12	56355474	56355474	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:56355474C>T	uc001sip.2	-	2	150	c.119G>A	c.(118-120)AGA>AAA	p.R40K	SILV_uc001siq.2_Missense_Mutation_p.R40K|SILV_uc010spx.1_Intron|SILV_uc001sir.2_Missense_Mutation_p.R40K	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	40					melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						GGCTTTGGTTCTGAGTTGCCT	0.522000													27	76					0	0	0.007291	0	0
SSH1	54434	broad.mit.edu	37	12	109201430	109201430	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:109201430G>A	uc001tnm.2	-	8	797	c.710C>T	c.(709-711)TCC>TTC	p.S237F	SSH1_uc001tnl.2_5'Flank|SSH1_uc010sxg.1_Missense_Mutation_p.S248F|SSH1_uc001tnn.3_Missense_Mutation_p.S237F|SSH1_uc001tno.1_Missense_Mutation_p.S141F	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	237					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						TAGCGCGGGGGAGTCGGGCCG	0.627000													40	30					0	0	0.002522	0	0
PPTC7	160760	broad.mit.edu	37	12	110989648	110989648	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:110989648C>A	uc001trh.1	-	2	577	c.349G>T	c.(349-351)GGA>TGA	p.G117*		NM_139283	NP_644812	Q8NI37	PPTC7_HUMAN	T-cell activation protein phosphatase 2C	117	PP2C-like.						metal ion binding|phosphoprotein phosphatase activity				0						GTGAGAATTCCAATGGGATTA	0.433000													49	29					7.22619e-39	1.05402e-38	0.003610	1	0
ALDH2	217	broad.mit.edu	37	12	112237856	112237856	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:112237856G>A	uc001tst.2	+	11	1836	c.1395G>A	c.(1393-1395)GCG>GCA	p.A465A	ALDH2_uc010syi.1_Silent_p.A418A|ALDH2_uc009zvy.2_Silent_p.A389A	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	465					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity			skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	CCCTCCAGGCGGGCACTGTGT	0.567000			T	HMGA2	leiomyoma								7	8					0	0	0.001984	0	0
NAA25	80018	broad.mit.edu	37	12	112486128	112486129	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:112486128_112486129CC>TT	uc001ttm.2	-	16	1867_1868	c.1847_1848GG>AA	c.(1846-1848)CGG>CAA	p.R616Q	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Missense_Mutation_p.R588Q|NAA25_uc009zwa.1_Missense_Mutation_p.R616Q	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	616						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						CTAACAGCATCCGTTCAGTACG	0.386000													21	17					0	0	0.004672	0	0
DNAH10	196385	broad.mit.edu	37	12	124330288	124330288	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:124330288C>T	uc001uft.3	+	30	5173	c.5148C>T	c.(5146-5148)CAC>CAT	p.H1716H		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1716	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GGAAAATGCACCGGCAGATCG	0.512000													15	17					0	0	0.004007	0	0
DHX37	57647	broad.mit.edu	37	12	125457055	125457055	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:125457055G>A	uc001ugy.2	-	7	1170	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	357	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		CAACCTTCTGGATTTCTTTAA	0.552000													39	42					0	0	0.002852	0	0
GPR133	283383	broad.mit.edu	37	12	131593342	131593342	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:131593342G>A	uc001uit.3	+	18	2520	c.1961G>A	c.(1960-1962)GGG>GAG	p.G654E	GPR133_uc010tbm.1_Missense_Mutation_p.G686E|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Missense_Mutation_p.G173E|GPR133_uc009zyp.2_RNA	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	654	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CTGGTGGAGGGGCTGCACCTC	0.453000													32	63					0	0	0.002836	0	0
ULK1	8408	broad.mit.edu	37	12	132402023	132402023	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr12:132402023C>T	uc001uje.2	+	22	2518	c.2250C>T	c.(2248-2250)TCC>TCT	p.S750S		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	750					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		GCAGCCCTTCCCCGGTGGTCT	0.697000													3	6					0	0	0.000248	0	0
SACS	26278	broad.mit.edu	37	13	23911669	23911669	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr13:23911669G>A	uc001uon.2	-	10	6935	c.6346C>T	c.(6346-6348)CCC>TCC	p.P2116S	SACS_uc001uoo.2_Missense_Mutation_p.P1969S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2116					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CGTCCTTCGGGGTGGATCAAT	0.393000													18	14					0	0	0.007413	0	0
RXFP2	122042	broad.mit.edu	37	13	32366165	32366165	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr13:32366165C>T	uc001utt.2	+	15	1439	c.1368C>T	c.(1366-1368)ATC>ATT	p.I456I	RXFP2_uc010aba.2_Silent_p.I415I	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	456	Helical; Name=2; (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		CCATCAAAATCCTTTGTTGTA	0.338000													13	16					0	0	0.001368	0	0
DZIP1	22873	broad.mit.edu	37	13	96293791	96293791	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr13:96293791T>C	uc001vmk.2	-	5	1207	c.355A>G	c.(355-357)AAG>GAG	p.K119E	DZIP1_uc001vml.2_Missense_Mutation_p.K119E|DZIP1_uc001vmn.2_Missense_Mutation_p.K108E	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	119					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			CGGATGAGCTTCAGCAGCACC	0.602000													54	3					0	0	0.003610	0	0
OR4K5	79317	broad.mit.edu	37	14	20388956	20388956	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:20388956G>A	uc010tkw.1	+	1	191	c.191G>A	c.(190-192)GGA>GAA	p.G64E		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTCTCTTGGGAAACCTTTCC	0.433000													48	103					0	0	0.003610	0	0
OR4K13	390433	broad.mit.edu	37	14	20502632	20502632	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:20502632C>T	uc010tkz.1	-	1	286	c.286G>A	c.(286-288)GGA>AGA	p.G96R		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		GAATAACATCCCCACCATGAG	0.463000													15	55					0	0	0.003163	0	0
OXA1L	5018	broad.mit.edu	37	14	23235899	23235899	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:23235899C>T	uc001wgn.2	+	1	169	c.169C>T	c.(169-171)CTT>TTT	p.L57F	OXA1L_uc010tnc.1_Missense_Mutation_p.L57F|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.L57F|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		AGCAAGTCCTCTTCCGGGCAA	0.607000													33	79					0	0	0.001786	0	0
C14orf119	55017	broad.mit.edu	37	14	23567135	23567135	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:23567135T>A	uc001wiu.2	+	2	310	c.268T>A	c.(268-270)TCT>ACT	p.S90T	ACIN1_uc001wit.3_5'Flank|ACIN1_uc010akg.2_5'Flank|ACIN1_uc010tnj.1_5'Flank	NM_017924	NP_060394	Q9NWQ9	CN119_HUMAN	chromosome 14 open reading frame 119	90											0	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00649)		CCGACCACCTTCTATCTTTGA	0.517000													40	81					0	0	0.002522	0	0
CMA1	1215	broad.mit.edu	37	14	24975720	24975720	+	Silent	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:24975720T>C	uc001wpp.1	-	3	330	c.300A>G	c.(298-300)CCA>CCG	p.P100P	CMA1_uc010alx.1_5'UTR	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	100	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		TGTTATATTTTGGATGACGGA	0.428000													55	32					0	0	0.003610	0	0
COCH	1690	broad.mit.edu	37	14	31354821	31354821	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:31354821G>A	uc001wqr.2	+	10	1035	c.955G>A	c.(955-957)GAC>AAC	p.D319N	COCH_uc001wqp.2_Missense_Mutation_p.D319N|COCH_uc001wqq.3_Missense_Mutation_p.D319N|uc001wqs.2_RNA|COCH_uc001wqt.1_Missense_Mutation_p.D170N	NM_004086	NP_004077	O43405	COCH_HUMAN	cochlin precursor	319	VWFA 1.				sensory perception of sound	proteinaceous extracellular matrix				pancreas(1)|central_nervous_system(1)|skin(1)	3	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.00645)		CACATTTGTTGACAAGGTAAA	0.438000													15	8					0	0	0.003163	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65210189	65210190	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:65210189_65210190GG>AA	uc001xho.1	+	17	3697_3698	c.3428_3429GG>AA	c.(3427-3429)CGG>CAA	p.R1143Q	PLEKHG3_uc001xhn.1_Missense_Mutation_p.R1087Q|PLEKHG3_uc001xhp.2_Missense_Mutation_p.R1264Q|PLEKHG3_uc010aqh.1_Missense_Mutation_p.R685Q|PLEKHG3_uc001xhq.1_Missense_Mutation_p.R648Q	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	1143					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		GACAACCGGCGGGTGATTGTCA	0.668000													28	15					0	0	0.004672	0	0
SERPINA13	388007	broad.mit.edu	37	14	95107291	95107291	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:95107291C>T	uc001ydt.2	+	1	230	c.142C>T	c.(142-144)CTC>TTC	p.L48F		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						CCCTCCCCTCCTCACAGCTTC	0.289000													6	3					0	0	0.001984	0	0
TCL1B	9623	broad.mit.edu	37	14	96157184	96157184	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:96157184C>T	uc001yez.2	+	2	316	c.274C>T	c.(274-276)CCC>TCC	p.P92S	TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL1B_uc001yfa.2_Missense_Mutation_p.P92S	NM_004918	NP_004909	O95988	TCL1B_HUMAN	T-cell leukemia/lymphoma 1B	92								p.P92P(1)		ovary(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		GCAGCTCTACCCCGGGAGGAA	0.607000													10	43					0	0	0.008291	0	0
BAG5	9529	broad.mit.edu	37	14	104026188	104026188	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:104026188G>A	uc001yni.1	-	2	1548	c.1314C>T	c.(1312-1314)CTC>CTT	p.L438L	BAG5_uc001ynh.1_Silent_p.L479L|BAG5_uc001ynj.1_Silent_p.L438L	NM_004873	NP_004864	Q9UL15	BAG5_HUMAN	BCL2-associated athanogene 5 isoform b	438	BAG 5.				apoptosis|negative regulation of protein refolding|negative regulation of ubiquitin-protein ligase activity|neuron death|protein folding|regulation of inclusion body assembly	inclusion body|perinuclear region of cytoplasm	chaperone binding|ubiquitin protein ligase binding			ovary(2)	2		Melanoma(154;0.155)	Epithelial(46;0.144)			ATTTCAGGTCGAGATAGCTGA	0.453000													30	87					0	0	0.002096	0	0
CDCA4	55038	broad.mit.edu	37	14	105477609	105477609	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:105477609G>A	uc001yqa.2	-	2	754	c.658C>T	c.(658-660)CCT>TCT	p.P220S	CDCA4_uc001yqb.2_Missense_Mutation_p.P220S	NM_145701	NP_663747	Q9BXL8	CDCA4_HUMAN	cell division cycle associated 4	220						nucleus				ovary(1)	1		all_cancers(154;0.0798)|Melanoma(154;0.155)|all_epithelial(191;0.183)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.142)		CTGGAGCTAGGGCCTGGGGTG	0.677000													8	19					0	0	0.003080	0	0
ADAM6	8755	broad.mit.edu	37	14	107099220	107099220	+	RNA	SNP	A	T	T	rs148129115	by1000genomes	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr14:107099220A>T	uc010tyt.1	-	98		c.4502T>A								Parts of antibodies, mostly variable regions.												0						GTCTCTGGAGATGGTGAATCG	0.498000													5	36					0	0	0.000602	0	0
CYFIP1	23191	broad.mit.edu	37	15	22969284	22969285	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:22969284_22969285GG>AA	uc001yus.2	+	22	2614_2615	c.2510_2511GG>AA	c.(2509-2511)GGG>GAA	p.G837E	CYFIP1_uc001yut.2_Missense_Mutation_p.G837E|CYFIP1_uc010aya.1_Missense_Mutation_p.G865E|CYFIP1_uc001yuu.2_Missense_Mutation_p.G406E|CYFIP1_uc001yuv.2_Missense_Mutation_p.G31E	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	837					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		GCGCCCTACGGGAGGATCACCC	0.614000													16	59					0	0	0.004672	0	0
C15orf2	23742	broad.mit.edu	37	15	24922033	24922033	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:24922033C>T	uc001ywo.2	+	1	1493	c.1019C>T	c.(1018-1020)CCT>CTT	p.P340L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	340	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCGCTGCCCCCTTCACTGCCA	0.587000													17	24					0	0	0.006122	0	0
GABRG3	2567	broad.mit.edu	37	15	27572084	27572084	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:27572084C>T	uc001zbg.1	+	4	565	c.399C>T	c.(397-399)TTC>TTT	p.F133F	GABRG3_uc001zbf.2_Silent_p.F133F	NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	133	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		ACACCATCTTCCGCAATTCTA	0.468000													50	27					0	0	0.003610	0	0
DUOX2	50506	broad.mit.edu	37	15	45387780	45387780	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:45387780C>T	uc010bea.2	-	31	4297	c.4094G>A	c.(4093-4095)GGA>GAA	p.G1365E	DUOX2_uc001zun.2_Missense_Mutation_p.G1365E	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1365	Cytoplasmic (Potential).|FAD-binding FR-type.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TCCAAACGGTCCATCAAGGTA	0.567000													21	21					0	0	0.002299	0	0
ATP8B4	79895	broad.mit.edu	37	15	50226364	50226364	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:50226364C>T	uc001zxu.2	-	15	1445	c.1303G>A	c.(1303-1305)GAT>AAT	p.D435N	ATP8B4_uc010ber.2_Missense_Mutation_p.D308N|ATP8B4_uc010ufd.1_Missense_Mutation_p.D308N|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	435	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		ACTGAGAAATCCACAGGCTCT	0.353000													16	19					0	0	0.004007	0	0
TPM1	7168	broad.mit.edu	37	15	63349227	63349227	+	Missense_Mutation	SNP	T	G	G	rs104894504		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:63349227T>G	uc002alg.2	+	3	475	c.284T>G	c.(283-285)GTT>GGT	p.V95G	TPM1_uc002alh.2_Missense_Mutation_p.V95G|TPM1_uc010bgn.2_RNA|TPM1_uc002ali.2_Missense_Mutation_p.V95G|TPM1_uc002alj.2_Missense_Mutation_p.V95G|TPM1_uc002alk.2_Missense_Mutation_p.V95G|TPM1_uc002all.2_Missense_Mutation_p.V95G|TPM1_uc002alm.2_Missense_Mutation_p.V137G|TPM1_uc010uie.1_Missense_Mutation_p.V95G|TPM1_uc002alp.2_Missense_Mutation_p.V95G|TPM1_uc010uif.1_Missense_Mutation_p.V59G|TPM1_uc002alr.2_Missense_Mutation_p.V59G|TPM1_uc002als.2_Missense_Mutation_p.V59G|TPM1_uc010uig.1_Missense_Mutation_p.V59G|TPM1_uc002alt.2_Missense_Mutation_p.V59G|TPM1_uc010bgp.2_Intron	NM_001018005	NP_001018005	P09493	TPM1_HUMAN	tropomyosin 1 alpha chain isoform 1	95	By similarity.				cardiac muscle contraction|cellular component movement|cellular response to reactive oxygen species|muscle filament sliding|negative regulation of cell migration|positive regulation of ATPase activity|positive regulation of cell adhesion|positive regulation of heart rate by epinephrine|positive regulation of stress fiber assembly|regulation of muscle contraction|ruffle organization|sarcomere organization|ventricular cardiac muscle tissue morphogenesis|wound healing	bleb|cytosol|muscle thin filament tropomyosin|ruffle membrane|stress fiber	actin binding|structural constituent of cytoskeleton|structural constituent of muscle				0						ATCCAGCTGGTTGAGGAAGAG	0.532000													40	82					0	0	0.005524	0	0
TMEM202	338949	broad.mit.edu	37	15	72700110	72700110	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:72700110G>T	uc002auq.2	+	5	698	c.698G>T	c.(697-699)AGA>ATA	p.R233I	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	233						integral to membrane				central_nervous_system(1)|skin(1)	2						CCAACAGAGAGATCAAGGCTG	0.453000													17	41					3.32936e-07	4.74998e-07	0.006122	1	0
TMC3	342125	broad.mit.edu	37	15	81660594	81660594	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:81660594C>T	uc002bgo.1	-	3	312	c.312G>A	c.(310-312)GAG>GAA	p.E104E	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Silent_p.E104E	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	104	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						TCTGTATTACCTCTGCACCTG	0.289000													68	44					0	0	0.003610	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651197	84651197	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:84651197C>T	uc002bjz.3	+	21	3041	c.2817C>T	c.(2815-2817)TTC>TTT	p.F939F	ADAMTSL3_uc010bmt.1_Silent_p.F939F|ADAMTSL3_uc010bmu.1_Silent_p.F939F	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	939	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGCGACGATTCCAGAAATCTC	0.498000													24	49					0	0	0.003954	0	0
WDR93	56964	broad.mit.edu	37	15	90260155	90260155	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:90260155C>T	uc002boj.2	+	7	871	c.770C>T	c.(769-771)CCC>CTC	p.P257L	WDR93_uc010bnr.2_Missense_Mutation_p.P257L	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	257					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TCCCTTGGTCCCATTTCTGCA	0.323000													20	60					0	0	0.002780	0	0
UNC45A	55898	broad.mit.edu	37	15	91486170	91486170	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:91486170C>T	uc002bqg.2	+	8	1225	c.885C>T	c.(883-885)ATC>ATT	p.I295I	UNC45A_uc002bqd.2_Silent_p.I280I	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	295					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			AGGTCCTCATCAGTAACCTCT	0.567000													145	292					0	0	0.003610	0	0
WDR90	197335	broad.mit.edu	37	16	717536	717536	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:717536C>T	uc002cii.1	+	41	5248	c.5194C>T	c.(5194-5196)CTC>TTC	p.L1732F	WDR90_uc002cij.1_RNA|WDR90_uc002cil.1_RNA|WDR90_uc002cin.1_Missense_Mutation_p.L347F|WDR90_uc002cio.1_Missense_Mutation_p.L331F|WDR90_uc010bqx.1_Missense_Mutation_p.L283F|RHOT2_uc010uum.1_5'Flank|RHOT2_uc002cip.2_5'Flank|RHOT2_uc002ciq.2_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	1732	WD 21.									ovary(1)	1		Hepatocellular(780;0.0218)				CGCCAGGCTGCTCTTCACGGC	0.637000													30	9					0	0	0.001786	0	0
TBL3	10607	broad.mit.edu	37	16	2027060	2027060	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:2027060C>T	uc002cnu.1	+	15	1548	c.1446C>T	c.(1444-1446)ATC>ATT	p.I482I	TBL3_uc002cnv.1_Silent_p.I368I|TBL3_uc010bsb.1_Silent_p.I271I|TBL3_uc010bsc.1_Silent_p.I349I|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	482	WD 10.				G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						GCCAGGACATCAACAGCGTGG	0.637000													27	24					0	0	0.007291	0	0
E4F1	1877	broad.mit.edu	37	16	2284258	2284258	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:2284258G>A	uc002cpm.2	+	10	1510	c.1462G>A	c.(1462-1464)GAG>AAG	p.E488K	E4F1_uc010bsi.2_Missense_Mutation_p.E488K|E4F1_uc010bsj.2_Intron|DNASE1L2_uc002cpn.2_5'Flank|DNASE1L2_uc002cpo.2_5'Flank|DNASE1L2_uc002cpp.2_5'Flank|DNASE1L2_uc002cpq.2_5'Flank	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	488	Mediates interaction with CDKN2A.|Interaction with BMI1.				cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						GCACGTGCGTGAGCGCCGCTT	0.672000													13	37					0	0	0.002450	0	0
ZNF213	7760	broad.mit.edu	37	16	3190750	3190750	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:3190750C>G	uc010uws.1	+	6	1229	c.782C>G	c.(781-783)CCA>CGA	p.P261R	ZNF213_uc002cud.2_RNA|ZNF213_uc010btf.2_3'UTR|ZNF213_uc010bth.2_Missense_Mutation_p.P261R|ZNF213_uc010uwt.1_3'UTR	NM_004220	NP_004211	O14771	ZN213_HUMAN	zinc finger protein 213	261	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCGGTGGTGCCAGGCCAGACA	0.667000													28	22					0	0	0.002445	0	0
CACNG3	10368	broad.mit.edu	37	16	24366209	24366209	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:24366209C>T	uc002dmf.2	+	3	1551	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	117	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TGCTGTTCTTCGGCGGGCTCT	0.617000													17	27					0	0	0.004007	0	0
JMJD5	79831	broad.mit.edu	37	16	27221454	27221454	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:27221454G>A	uc002doh.2	+	2	192	c.10G>A	c.(10-12)GAC>AAC	p.D4N	JMJD5_uc010bxv.2_Missense_Mutation_p.D4N|JMJD5_uc010vcn.1_Missense_Mutation_p.D42N|JMJD5_uc010bxw.2_Missense_Mutation_p.D4N	NM_024773	NP_079049	Q8N371	KDM8_HUMAN	jumonji domain containing 5 isoform 2	4					G2/M transition of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|histone demethylase activity (H3-K36 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(2)|upper_aerodigestive_tract(1)	3						GATGGCTGGAGACACCCACTG	0.607000													49	31					0	0	0.003610	0	0
FBRS	64319	broad.mit.edu	37	16	30679963	30679963	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:30679963C>T	uc002dzd.3	+	10	860	c.597C>T	c.(595-597)TTC>TTT	p.F199F	FBRS_uc002dzc.3_Silent_p.F111F	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	199										ovary(1)	1			Colorectal(24;0.103)			GCCCCACATTCAGTGAGTGCG	0.677000													15	72					0	0	0.004990	0	0
CNGB1	1258	broad.mit.edu	37	16	58001115	58001115	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:58001115C>T	uc002emt.2	-	2	141	c.76G>A	c.(76-78)GAA>AAA	p.E26K	CNGB1_uc010cdh.2_Missense_Mutation_p.E26K|CNGB1_uc002emu.2_Missense_Mutation_p.E26K	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	26	Glu-rich.				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GGTTCCACTTCCTCTTCCTCC	0.612000													31	30					0	0	0.001786	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67318934	67318934	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:67318934C>A	uc002eso.3	+	12	4546	c.2011C>A	c.(2011-2013)CCC>ACC	p.P671T	PLEKHG4_uc002esp.3_Missense_Mutation_p.P478T|PLEKHG4_uc002esq.3_Missense_Mutation_p.P671T|PLEKHG4_uc010cef.2_Missense_Mutation_p.P671T|PLEKHG4_uc002ess.3_Missense_Mutation_p.P671T|PLEKHG4_uc010ceg.2_Missense_Mutation_p.P590T	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	671					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		TGCCCACCCTCCCCTGAGGAA	0.632000													24	9					4.26978e-12	6.11845e-12	0.003330	1	0
ZDHHC1	29800	broad.mit.edu	37	16	67432122	67432122	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:67432122G>A	uc010vjm.1	-	8	1224	c.920C>T	c.(919-921)CCC>CTC	p.P307L		NM_013304	NP_037436	Q8WTX9	ZDHC1_HUMAN	zinc finger, DHHC-type containing 1	307						integral to membrane	DNA binding|zinc ion binding				0		Ovarian(137;0.223)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0178)|all cancers(182;5.71e-53)|Epithelial(162;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(108;1.53e-29)|Kidney(780;4.37e-05)|BRCA - Breast invasive adenocarcinoma(181;5.8e-05)|GBM - Glioblastoma multiforme(240;0.0022)		TACCTGAATGGGCCGCATCTT	0.622000													23	48					0	0	0.002780	0	0
FUK	197258	broad.mit.edu	37	16	70497570	70497570	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:70497570C>T	uc002eyy.2	+	3	185	c.127C>T	c.(127-129)CTG>TTG	p.L43L	FUK_uc010vmb.1_Silent_p.L43L|FUK_uc010cft.2_Silent_p.L43L|FUK_uc002eyz.2_Intron	NM_145059	NP_659496	Q8N0W3	FUK_HUMAN	fucokinase	43						cytoplasm	ATP binding|fucokinase activity			ovary(1)	1		Ovarian(137;0.0694)				TGCTGGGACGCTGTTACTGGC	0.657000													21	57					0	0	0.008871	0	0
PLCG2	5336	broad.mit.edu	37	16	81957190	81957190	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:81957190C>G	uc002fgt.2	+	22	2560	c.2408C>G	c.(2407-2409)CCC>CGC	p.P803R		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	803	SH3.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TCCAAGGAGCCCGGGGGCTGG	0.582000													8	23					0	0	0.004482	0	0
ANKRD11	29123	broad.mit.edu	37	16	89347188	89347188	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr16:89347188G>A	uc002fmx.1	-	9	6223	c.5762C>T	c.(5761-5763)GCC>GTC	p.A1921V	ANKRD11_uc002fmy.1_Missense_Mutation_p.A1921V|ANKRD11_uc002fnc.1_Missense_Mutation_p.A1921V|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.A1878V	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1921	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GATGATGGCGGCCGTCGCCTG	0.697000													28	19					0	0	0.007291	0	0
SMG6	23293	broad.mit.edu	37	17	2203844	2203845	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:2203844_2203845GG>AT	uc002fub.1	-	2	257_258	c.202_203CC>AT	c.(202-204)CCC>ATC	p.P68I	SMG6_uc002fud.1_Missense_Mutation_p.P37I	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	68					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						ACTCCCAGGGGGTTCCTTGATT	0.470000													49	64					0	0	0.004672	0	0
ARRB2	409	broad.mit.edu	37	17	4621248	4621248	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:4621248C>T	uc002fyj.2	+	8	779	c.551C>T	c.(550-552)TCA>TTA	p.S184L	ARRB2_uc002fyk.2_Missense_Mutation_p.S169L|ARRB2_uc002fyl.2_Missense_Mutation_p.S184L|ARRB2_uc010vsg.1_Missense_Mutation_p.S205L|ARRB2_uc002fym.2_Missense_Mutation_p.S169L|ARRB2_uc002fyn.2_5'UTR|ARRB2_uc010ckq.2_5'UTR|ARRB2_uc002fyo.2_5'UTR	NM_004313	NP_004304	P32121	ARRB2_HUMAN	arrestin, beta 2 isoform 1	184					cell chemotaxis|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|G-protein coupled receptor internalization|negative regulation of natural killer cell mediated cytotoxicity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway	coated pit|cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	angiotensin receptor binding|ubiquitin protein ligase binding				0						CCCCAGCCTTCAGCCGAAACC	0.632000													13	13					0	0	0.003163	0	0
MYH13	8735	broad.mit.edu	37	17	10215912	10215912	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:10215912C>T	uc002gmk.1	-	31	4434	c.4344G>A	c.(4342-4344)AAG>AAA	p.K1448K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1448	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCCTCTGCTTCTTGTCCAGTG	0.522000													17	14					0	0	0.007413	0	0
CYTSB	92521	broad.mit.edu	37	17	20013830	20013830	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:20013830G>A	uc002gwq.2	+	3	383	c.238G>A	c.(238-240)GGA>AGA	p.G80R	CYTSB_uc010cqx.2_Missense_Mutation_p.G80R|CYTSB_uc002gwr.2_Missense_Mutation_p.G80R|CYTSB_uc002gws.2_Missense_Mutation_p.G80R	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	80						nucleus					0						CGCCACTGCCGGAGCCATCTC	0.652000													12	33					0	0	0.001368	0	0
KIAA0100	9703	broad.mit.edu	37	17	26962379	26962379	+	Silent	SNP	A	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:26962379A>G	uc002hbu.2	-	16	2325	c.2226T>C	c.(2224-2226)GCT>GCC	p.A742A		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	742						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					CAGCTACAAAAGCTGTGAGCT	0.567000													3	105					0	0	0.004672	0	0
MYO18A	399687	broad.mit.edu	37	17	27437631	27437631	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:27437631G>A	uc002hdt.1	-	18	3068	c.2910C>T	c.(2908-2910)ATC>ATT	p.I970I	MYO18A_uc010wbc.1_Silent_p.I512I|MYO18A_uc002hds.2_Silent_p.I512I|MYO18A_uc010csa.1_Silent_p.I970I|MYO18A_uc002hdu.1_Silent_p.I970I|MYO18A_uc010wbd.1_Silent_p.I639I	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	970	Myosin head-like.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			ACAGGTTGCTGATGATTTTTC	0.637000													11	8					0	0	0.000978	0	0
CPD	1362	broad.mit.edu	37	17	28749859	28749859	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:28749859C>T	uc002hfb.1	+	5	1490	c.1475C>T	c.(1474-1476)TCC>TTC	p.S492F	CPD_uc010wbo.1_Missense_Mutation_p.S245F|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	492	Extracellular (Potential).|Carboxypeptidase-like 1.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						ACATCATCCTCCTACCAGCCA	0.438000													45	71					0	0	0.003610	0	0
C17orf42	79736	broad.mit.edu	37	17	29231456	29231456	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:29231456C>T	uc002hfu.2	-	2	193	c.123G>A	c.(121-123)AAG>AAA	p.K41K	C17orf42_uc002hfv.2_RNA|C17orf42_uc002hfw.2_Silent_p.K41K|C17orf42_uc010wbs.1_Silent_p.K41K	NM_024683	NP_078959	Q96QE5	TEFM_HUMAN	hypothetical protein LOC79736	41					oxidative phosphorylation|regulation of transcription, DNA-dependent|transcription from mitochondrial promoter	mitochondrial nucleoid|ribonucleoprotein complex	DNA polymerase processivity factor activity|nucleic acid binding|protein binding			ovary(1)	1		all_cancers(10;4.64e-07)|all_hematologic(16;0.014)|Acute lymphoblastic leukemia(14;0.0236)|Myeloproliferative disorder(56;0.0255)				GAGTAATTTTCTTAGGTGTAG	0.443000													16	53					0	0	0.003163	0	0
FBXO47	494188	broad.mit.edu	37	17	37093469	37093469	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:37093469C>T	uc002hrc.2	-	11	1518	c.1318G>A	c.(1318-1320)GAG>AAG	p.E440K		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	440											0						TACAGGACCTCCTTATGGAAG	0.418000													17	24					0	0	0.006122	0	0
KRT10	3858	broad.mit.edu	37	17	38978795	38978795	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:38978795G>A	uc002hvi.2	-	1	69	c.43C>T	c.(43-45)CGC>TGC	p.R15C	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	15	Head.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				cctccACTGCGGGAGGAAGAG	0.388000													31	22					0	0	0.008361	0	0
DHX8	1659	broad.mit.edu	37	17	41577465	41577465	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:41577465C>T	uc002idu.1	+	11	1613	c.1540C>T	c.(1540-1542)CCT>TCT	p.P514S	DHX8_uc010wif.1_Missense_Mutation_p.P423S|DHX8_uc010wig.1_Missense_Mutation_p.P514S	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	514						catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		TGACCCTCTGCCTGATGGTAG	0.512000													60	92					0	0	0.003610	0	0
ASB16	92591	broad.mit.edu	37	17	42248184	42248184	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:42248184C>T	uc002ifl.1	+	1	111	c.27C>T	c.(25-27)ACC>ACT	p.T9T	ASB16_uc002ifm.1_RNA	NM_080863	NP_543139	Q96NS5	ASB16_HUMAN	ankyrin repeat and SOCS box-containing protein	9					intracellular signal transduction		protein binding			kidney(2)	2		Breast(137;0.00765)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.114)		TCCCCTTCACCTCCTCCATGC	0.687000													21	38					0	0	0.002780	0	0
ITGA2B	3674	broad.mit.edu	37	17	42449774	42449774	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:42449774C>T	uc002igt.1	-	30	3110	c.3078G>A	c.(3076-3078)CGG>CGA	p.R1026R		NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	1026	Cytoplasmic (Potential).|GFFKR motif.		R -> Q (in GT).		axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	GTGGCCGGTTCCGCTTGAAGA	0.577000													14	17					0	0	0.002450	0	0
KIF2B	84643	broad.mit.edu	37	17	51902278	51902278	+	Silent	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:51902278T>C	uc002iua.2	+	1	2040	c.1884T>C	c.(1882-1884)GGT>GGC	p.G628G	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	628					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AGAGAGCTGGTGGAGTACACC	0.428000													28	111					0	0	0.004656	0	0
MPO	4353	broad.mit.edu	37	17	56348214	56348214	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:56348214C>G	uc002ivu.1	-	12	2218	c.2041G>C	c.(2041-2043)GAG>CAG	p.E681Q		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	681					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	CCCTCGTTCTCCCACCAAAAC	0.572000													48	35					0	0	0.003610	0	0
YPEL2	388403	broad.mit.edu	37	17	57430800	57430801	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:57430800_57430801CC>TT	uc002ixm.1	+	2	358_359	c.30_31CC>TT	c.(28-33)TTCCAG>TTTTAG	p.Q11*	YPEL2_uc002ixl.1_Nonsense_Mutation_p.Q11*	NM_001005404	NP_001005404	Q96QA6	YPEL2_HUMAN	yippee-like 2	11						nucleolus					0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					CGAAGACTTTCCAGGCATATCT	0.545000													54	44					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	17	58512627	58512627	+	RNA	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:58512627C>T	uc002iyr.1	-	1		c.731G>A								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		ATCAGCTTTTCCCTTTTTCCC	0.507000													11	11					0	0	0.001855	0	0
INTS2	57508	broad.mit.edu	37	17	60003782	60003783	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:60003782_60003783GA>AC	uc002izn.2	-	2	323_324	c.247_248TC>GT	c.(247-249)TCC>GTC	p.S83V	INTS2_uc002izm.2_Missense_Mutation_p.S75V	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	83					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						TGCAACAATGGAGTTGACAGCT	0.450000													38	61					0	0	0.004672	0	0
KCNH6	81033	broad.mit.edu	37	17	61622496	61622496	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:61622496C>T	uc002jay.2	+	13	2642	c.2562C>T	c.(2560-2562)CCC>CCT	p.P854P	KCNH6_uc010wpl.1_Silent_p.P695P|KCNH6_uc010wpm.1_Silent_p.P818P|KCNH6_uc002jaz.1_Silent_p.P765P	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	854	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TCCAGAAGCCCATGCCCCAGG	0.637000													36	96					0	0	0.006230	0	0
GPR142	350383	broad.mit.edu	37	17	72367875	72367875	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:72367875C>T	uc010wqy.1	+	4	525	c.525C>T	c.(523-525)CTC>CTT	p.L175L	GPR142_uc010wqx.1_Silent_p.L87L	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	175	Cytoplasmic (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CAGTCAGCCTCCTGACCGCAG	0.627000													21	31					0	0	0.001523	0	0
RHBDF2	79651	broad.mit.edu	37	17	74470502	74470502	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:74470502G>A	uc002jrq.1	-	12	1797	c.1504C>T	c.(1504-1506)CAG>TAG	p.Q502*	RHBDF2_uc002jrp.1_Nonsense_Mutation_p.Q473*|RHBDF2_uc002jrr.1_Nonsense_Mutation_p.Q354*|RHBDF2_uc010wtf.1_3'UTR	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	502	Lumenal (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						TGGTCATTCTGGACACAGCAG	0.667000													62	35					0	0	0.003610	0	0
RNF213	57674	broad.mit.edu	37	17	78363957	78363958	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:78363957_78363958CC>TT	uc002jyh.1	+	42	9873_9874	c.9650_9651CC>TT	c.(9649-9651)CCC>CTT	p.P3217L	uc002jyi.1_Intron|RNF213_uc010dhx.1_Missense_Mutation_p.P161L	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			CTAAAGAACCCCCAAACCCAAA	0.520000													54	75					0	0	0.004672	0	0
CHMP6	79643	broad.mit.edu	37	17	78972194	78972195	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:78972194_78972195CC>TT	uc002jyw.3	+	7	602_603	c.524_525CC>TT	c.(523-525)TCC>TTT	p.S175F		NM_024591	NP_078867	Q96FZ7	CHMP6_HUMAN	chromatin modifying protein 6	175	Interaction with VPS4A.|Type-2 MIT-interacting motif.			Missing: Membrane association; releases autoinhibition.	cellular membrane organization|endosome transport|protein transport	cytosol|endomembrane system|late endosome membrane	protein N-terminus binding			ovary(1)	1	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0175)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GAGGTTCCCTCCGAGCCCCTTC	0.525000													43	100					0	0	0.004672	0	0
SLC38A10	124565	broad.mit.edu	37	17	79249886	79249886	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:79249886G>A	uc002jzz.1	-	8	1170	c.795C>T	c.(793-795)CCC>CCT	p.P265P	SLC38A10_uc002jzy.1_Silent_p.P183P|SLC38A10_uc002kab.2_Silent_p.P265P	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	265					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CCAGGTTGGAGGGAAAGTGCA	0.587000													31	28					0	0	0.007291	0	0
BAHCC1	57597	broad.mit.edu	37	17	79414271	79414271	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:79414271G>T	uc002kaf.2	+	9	3373	c.3373G>T	c.(3373-3375)GAG>TAG	p.E1125*	BAHCC1_uc002kae.2_Nonsense_Mutation_p.E355*	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	1125							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			AGGGGCCAGGGAGGCCACCCA	0.716000													7	10					0.00198382	0.00280575	0.001984	1	0
ACTG1	71	broad.mit.edu	37	17	79478221	79478221	+	Silent	SNP	G	A	A	rs146493032		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr17:79478221G>A	uc002kaj.1	-	3	820	c.795C>T	c.(793-795)TCC>TCT	p.S265S	ACTG1_uc002kah.1_Silent_p.S143S|ACTG1_uc002kai.1_Silent_p.S222S|ACTG1_uc002kak.1_Silent_p.S265S|ACTG1_uc010wun.1_Silent_p.S265S|ACTG1_uc002kal.1_Silent_p.S265S|ACTG1_uc002kag.2_RNA	NM_001614	NP_001605	P63261	ACTG_HUMAN	actin, gamma 1 propeptide	265					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			TACCCAGGAAGGAAGGCTGGA	0.557000													72	65					0	0	0.003610	0	0
KIAA0802	23255	broad.mit.edu	37	18	8784535	8784535	+	Silent	SNP	C	T	T	rs114537770	by1000genomes	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr18:8784535C>T	uc002knr.2	+	6	1567	c.1425C>T	c.(1423-1425)ACC>ACT	p.T475T	KIAA0802_uc002knq.2_Silent_p.T475T|KIAA0802_uc010dkw.1_Silent_p.T313T	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	826	Potential.										0						TCACGGACACCGACAGCTTCC	0.677000													69	55					0	0	0.003610	0	0
TUBB6	84617	broad.mit.edu	37	18	12325477	12325478	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr18:12325477_12325478CC>TT	uc002kqw.2	+	4	734_735	c.689_690CC>TT	c.(688-690)TCC>TTT	p.S230F	TUBB6_uc002kqv.2_Missense_Mutation_p.S158F|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Missense_Mutation_p.S193F|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	230					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		CACCTGGTGTCCGCCACCATGA	0.634000													35	31					0	0	0.004672	0	0
CXXC1	30827	broad.mit.edu	37	18	47810872	47810873	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr18:47810872_47810873GG>AA	uc002leq.3	-	9	1813_1814	c.1080_1081CC>TT	c.(1078-1083)CACCCA>CATTCA	p.P361S	MBD1_uc002leg.2_5'Flank|MBD1_uc010dow.1_5'Flank|MBD1_uc002leh.3_5'Flank|MBD1_uc002len.2_5'Flank|MBD1_uc002lei.3_5'Flank|MBD1_uc002lej.3_5'Flank|MBD1_uc002lek.3_5'Flank|MBD1_uc002lel.3_5'Flank|MBD1_uc002lem.3_5'Flank|MBD1_uc010xdj.1_5'Flank|MBD1_uc010xdk.1_5'Flank|MBD1_uc002leo.2_5'Flank|CXXC1_uc002lep.3_Missense_Mutation_p.P218S|CXXC1_uc002ler.3_Missense_Mutation_p.P365S|CXXC1_uc010doy.2_Missense_Mutation_p.P361S|CXXC1_uc002les.2_Missense_Mutation_p.P361S	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	361					histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GCCCTCTCTGGGTGTTTCCATT	0.589000													29	42					0	0	0.004672	0	0
CDH7	1005	broad.mit.edu	37	18	63477063	63477063	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr18:63477063C>T	uc002ljz.2	+	3	659	c.334C>T	c.(334-336)CGT>TGT	p.R112C	CDH7_uc002lka.2_Missense_Mutation_p.R112C|CDH7_uc002lkb.2_Missense_Mutation_p.R112C	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	112	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GAGACTGGATCGTGAGGAGCA	0.498000													14	21					0	0	0.001855	0	0
ZNF516	9658	broad.mit.edu	37	18	74154768	74154768	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr18:74154768G>A	uc010dqx.1	-	2	478	c.243C>T	c.(241-243)ATC>ATT	p.I81I	ZNF516_uc002lme.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	81	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		GGTGGCTCCGGATGTGAATCT	0.672000													4	4					0	0	0.000248	0	0
ZNF236	7776	broad.mit.edu	37	18	74587518	74587518	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr18:74587518G>A	uc002lmi.2	+	6	930	c.732G>A	c.(730-732)ATG>ATA	p.M244I	ZNF236_uc002lmj.2_RNA|ZNF236_uc002lmk.1_Missense_Mutation_p.M244I	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	244	C2H2-type 7.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		AGACCCACATGATCAAGCACA	0.493000											OREG0025069	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	39					0	0	0.002299	0	0
PLEKHJ1	55111	broad.mit.edu	37	19	2233889	2233889	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:2233889A>G	uc002lvf.1	-	6	481	c.400T>C	c.(400-402)TTC>CTC	p.F134L	SF3A2_uc002lvg.2_5'Flank	NM_018049	NP_060519	Q9NW61	PKHJ1_HUMAN	pleckstrin homology domain containing, family J	134							protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GATATGCCGAACTGTTCCAGG	0.701000													17	9					0	0	0.004007	0	0
TLE2	7089	broad.mit.edu	37	19	3005473	3005473	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:3005473C>T	uc002lww.2	-	17	2121	c.1858G>A	c.(1858-1860)GAG>AAG	p.E620K	TLE2_uc010xhb.1_Missense_Mutation_p.E287K|TLE2_uc010dth.2_Missense_Mutation_p.E621K|TLE2_uc010xhc.1_Missense_Mutation_p.E498K|TLE2_uc010dti.2_Missense_Mutation_p.E634K	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	620	WD 4.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGCGGCCCTCCCGCAGGTCC	0.632000													13	4					0	0	0.002450	0	0
ARRDC5	645432	broad.mit.edu	37	19	4891232	4891232	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:4891232G>A	uc002mbm.2	-	3	855	c.855C>T	c.(853-855)GAC>GAT	p.D285D		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	285					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		TGATCTCACCGTCCTGCGTGC	0.617000													7	121					0	0	0.003080	0	0
ACSBG2	81616	broad.mit.edu	37	19	6165878	6165878	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:6165878G>A	uc002mef.1	+	7	817	c.590G>A	c.(589-591)TGG>TAG	p.W197*	ACSBG2_uc002mee.1_Nonsense_Mutation_p.W10*|ACSBG2_uc002meg.1_Nonsense_Mutation_p.W197*|ACSBG2_uc002meh.1_Nonsense_Mutation_p.W197*|ACSBG2_uc002mei.1_Nonsense_Mutation_p.W147*|ACSBG2_uc010xiz.1_Nonsense_Mutation_p.W197*	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	197					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						TGTCCACAGTGGGATGATTTC	0.517000											OREG0025194	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	33					0	0	0.006214	0	0
MCOLN1	57192	broad.mit.edu	37	19	7593764	7593764	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:7593764C>T	uc002mgo.2	+	9	1167	c.1042C>T	c.(1042-1044)CTG>TTG	p.L348L	MCOLN1_uc002mgp.2_Silent_p.L313L	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	348					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						GTGGGAGCGGCTGGAATTTGT	0.622000													25	9					0	0	0.006320	0	0
MYO1F	4542	broad.mit.edu	37	19	8610596	8610597	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:8610596_8610597GG>AA	uc002mkg.2	-	13	1407_1408	c.1293_1294CC>TT	c.(1291-1296)ATCCGC>ATTTGC	p.R432C	MYO1F_uc002mkh.2_3'UTR	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	432	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GGAGTCCAGCGGATGCCTTCCT	0.574000													116	66					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9057803	9057803	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:9057803C>T	uc002mkp.2	-	3	29847	c.29643G>A	c.(29641-29643)GAG>GAA	p.E9881E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9883	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGTGCTAGTCTCCCTGAATC	0.473000													25	47					0	0	0.004656	0	0
OR1M1	125963	broad.mit.edu	37	19	9204125	9204125	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:9204125G>A	uc010xkj.1	+	1	205	c.205G>A	c.(205-207)GTT>ATT	p.V69I		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						CCTGTCCCTGGTTGATTTCTG	0.557000													4	30					0	0	0.000602	0	0
OR7G1	125962	broad.mit.edu	37	19	9226424	9226424	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:9226424G>A	uc002mks.1	-	1	16	c.16C>T	c.(16-18)CAA>TAA	p.Q6*		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						ACAGCTGTTTGGTTTCTGGGT	0.428000													51	40					0	0	0.003610	0	0
ZNF441	126068	broad.mit.edu	37	19	11891143	11891143	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:11891143C>T	uc010dyj.2	+	4	698	c.504C>T	c.(502-504)CTC>CTT	p.L168L	ZNF441_uc002msn.3_Silent_p.L124L	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	168					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAAAGAAACTCTATGATTGTA	0.413000													16	35					0	0	0.004990	0	0
DCAF15	90379	broad.mit.edu	37	19	14070065	14070065	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:14070065C>T	uc002mxt.2	+	7	999	c.993C>T	c.(991-993)GCC>GCT	p.A331A	DCAF15_uc002mxu.2_5'Flank	NM_138353	NP_612362	Q66K64	DCA15_HUMAN	DDB1 and CUL4 associated factor 15	331										central_nervous_system(1)	1						TCCGCCGGGCCAAAGAGGCCA	0.687000													13	33					0	0	0.002450	0	0
DDX39	10212	broad.mit.edu	37	19	14521053	14521053	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:14521053G>A	uc010xnp.1	-	6	752	c.707C>T	c.(706-708)CCT>CTT	p.P236L	DDX39_uc002myo.2_Missense_Mutation_p.P236L|DDX39_uc010dzl.2_RNA|DDX39_uc010dzm.1_Missense_Mutation_p.P236L	NM_005804	NP_005795	O00148	DX39A_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	236	Helicase ATP-binding.				mRNA export from nucleus|nuclear mRNA splicing, via spliceosome	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding				0						CCTGCACACAGGCCGGATGTC	0.632000													17	43					0	0	0.004990	0	0
EMR3	84658	broad.mit.edu	37	19	14740969	14740969	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:14740969C>T	uc002mzi.3	-	14	1842	c.1694G>A	c.(1693-1695)TGG>TAG	p.W565*	EMR3_uc010dzp.2_Nonsense_Mutation_p.W513*|EMR3_uc010xnv.1_Nonsense_Mutation_p.W439*	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	565	Helical; Name=6; (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						GCCCAGACACCATGTGCAGCC	0.507000													16	28					0	0	0.001523	0	0
MED26	9441	broad.mit.edu	37	19	16687167	16687167	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:16687167G>A	uc002nen.1	-	3	1735	c.1474C>T	c.(1474-1476)CGG>TGG	p.R492W	MED26_uc002nee.2_Intron	NM_004831	NP_004822	O95402	MED26_HUMAN	mediator complex subunit 26	492					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|RNA polymerase II transcription cofactor activity|transcription coactivator activity			ovary(2)	2						CTGCTCTGCCGGCTCAGGTAG	0.627000													38	25					0	0	0.006230	0	0
ZNF257	113835	broad.mit.edu	37	19	22272154	22272154	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:22272154G>A	uc010ecx.2	+	4	1771	c.1602G>A	c.(1600-1602)AAG>AAA	p.K534K	ZNF257_uc010ecy.2_Silent_p.K502K	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	534	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				CCGTACATAAGAGAATTCATG	0.358000													4	9					0	0	0.000248	0	0
FBXO27	126433	broad.mit.edu	37	19	39517597	39517597	+	Silent	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:39517597T>C	uc002okh.2	-	5	703	c.621A>G	c.(619-621)CAA>CAG	p.Q207Q		NM_178820	NP_849142	Q8NI29	FBX27_HUMAN	F-box protein 27	207	FBA.				protein catabolic process	SCF ubiquitin ligase complex	glycoprotein binding			ovary(1)	1	all_cancers(60;3.79e-07)|all_lung(34;1.26e-07)|Lung NSC(34;1.46e-07)|all_epithelial(25;4.69e-07)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			CGTCTAGAAGTTGGACGAGGA	0.557000													62	49					0	0	0.003610	0	0
SAMD4B	55095	broad.mit.edu	37	19	39847636	39847636	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:39847636C>T	uc002olb.2	+	5	1138	c.103C>T	c.(103-105)CGT>TGT	p.R35C	SAMD4B_uc002ola.2_Missense_Mutation_p.R35C	NM_018028	NP_060498	Q5PRF9	SMAG2_HUMAN	sterile alpha motif domain containing 4B	35							protein binding				0	all_cancers(60;2.5e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			ACGGGTCACCCGTACCCAGGC	0.602000													14	10					0	0	0.002450	0	0
SPTBN4	57731	broad.mit.edu	37	19	41063226	41063226	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:41063226C>T	uc002ony.2	+	26	5673	c.5587C>T	c.(5587-5589)CCG>TCG	p.P1863S	SPTBN4_uc002onx.2_Missense_Mutation_p.P1863S|SPTBN4_uc002onz.2_Missense_Mutation_p.P1863S|SPTBN4_uc010egx.2_Missense_Mutation_p.P606S|SPTBN4_uc002ooa.2_Missense_Mutation_p.P539S	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1863	Spectrin 16.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCTGACCACCCCGCCTGAGCC	0.662000													30	28					0	0	0.002445	0	0
NUMBL	9253	broad.mit.edu	37	19	41186951	41186951	+	Silent	SNP	G	A	A	rs112715509	byFrequency	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:41186951G>A	uc002oon.2	-	6	579	c.411C>T	c.(409-411)GTC>GTT	p.V137V	NUMBL_uc010xvq.1_Silent_p.V96V|NUMBL_uc002ooo.2_Silent_p.V137V|NUMBL_uc010xvr.1_Silent_p.V96V	NM_004756	NP_004747	Q9Y6R0	NUMBL_HUMAN	numb homolog (Drosophila)-like	137	PID.				cytokine-mediated signaling pathway|lateral ventricle development|neuroblast division in subventricular zone|protein metabolic process	cytoplasm	protein binding			lung(3)|ovary(1)|breast(1)	5			Lung(22;0.000393)|LUSC - Lung squamous cell carcinoma(20;0.00105)			TGGTCTGGTCGACCAGAAGAT	0.438000													92	41					0	0	0.003610	0	0
ATP1A3	478	broad.mit.edu	37	19	42480654	42480654	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:42480654C>T	uc002osg.2	-	15	2162	c.2008G>A	c.(2008-2010)GAG>AAG	p.E670K	ATP1A3_uc010xwf.1_Missense_Mutation_p.E681K|ATP1A3_uc010xwg.1_Missense_Mutation_p.E640K|ATP1A3_uc010xwh.1_Missense_Mutation_p.E683K|ATP1A3_uc002osh.2_Missense_Mutation_p.E670K	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	670	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TGCAGGATCTCGTCGATTTGC	0.607000													15	37					0	0	0.003163	0	0
CIC	23152	broad.mit.edu	37	19	42793554	42793554	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:42793554C>T	uc002otf.1	+	8	1396	c.1356C>T	c.(1354-1356)GTC>GTT	p.V452V		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	452					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				ATGATGATGTCATTGGTGAGC	0.597000			T	DUX4	soft tissue sarcoma								6	3					0	0	0.001168	0	0
CEACAM1	634	broad.mit.edu	37	19	43025622	43025623	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:43025622_43025623CC>TT	uc002otv.2	-	4	867_868	c.754_755GG>AA	c.(754-756)GGG>AAG	p.G252K	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_RNA|CEACAM1_uc002otw.2_Missense_Mutation_p.G252K|CEACAM1_uc010eij.2_Missense_Mutation_p.G252K|CEACAM1_uc002otx.2_Missense_Mutation_p.G252K|CEACAM1_uc002oty.2_Missense_Mutation_p.G252K|CEACAM1_uc002otz.2_Missense_Mutation_p.G252K|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Missense_Mutation_p.G252K|CEACAM1_uc002oub.2_Missense_Mutation_p.G252K|CEACAM1_uc002ouc.2_Missense_Mutation_p.G252K	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	252	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	GAGGTTTGCCCCTGGACGGTAA	0.530000													24	24					0	0	0.004672	0	0
PSG6	5675	broad.mit.edu	37	19	43411751	43411751	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:43411751T>C	uc002ovj.1	-	4	1014	c.962A>G	c.(961-963)AAC>AGC	p.N321S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.N328S|PSG6_uc002ovi.2_Missense_Mutation_p.N322S|PSG6_uc010xwk.1_Missense_Mutation_p.N161S|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_Missense_Mutation_p.N111S|PSG6_uc002ovf.1_Intron|PSG6_uc002ovg.1_Missense_Mutation_p.N321S	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	321	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GGTGACTGGGTTACTGCGGAT	0.507000													30	66					0	0	0.003755	0	0
ZNF285	26974	broad.mit.edu	37	19	44891168	44891168	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:44891168G>A	uc002ozd.3	-	4	1326	c.1239C>T	c.(1237-1239)TCC>TCT	p.S413S	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Silent_p.S420S	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	413	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						CTTGAAGAACGGAGCTTGAAC	0.493000													16	25					0	0	0.008871	0	0
ZNF114	163071	broad.mit.edu	37	19	48785633	48785633	+	Silent	SNP	G	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:48785633G>C	uc002pil.1	+	5	512	c.15G>C	c.(13-15)TCG>TCC	p.S5S	ZNF114_uc010elv.1_Silent_p.S5S|ZNF114_uc002pim.1_Silent_p.S5S|ZNF114_uc002pin.2_5'UTR	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		TTTAGGACTCGGTGACCTTCG	0.378000													43	94					0	0	0.003610	0	0
AKT1S1	84335	broad.mit.edu	37	19	50374974	50374974	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:50374974C>T	uc002pql.3	-	4	1184	c.458_splice	c.e4-1	p.D153_splice	AKT1S1_uc002pqn.3_Splice_Site_p.D153_splice|AKT1S1_uc002pqm.3_Splice_Site_p.D153_splice	NM_032375	NP_115751	Q96B36	AKTS1_HUMAN	AKT1 substrate 1 (proline-rich)						negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|nerve growth factor receptor signaling pathway|neuroprotection|phosphatidylinositol-mediated signaling|regulation of survival gene product expression	cytosolic part	protein binding				0		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.0132)		AGGCTGCCATCTGAAAGAGAG	0.657000													31	76					0	0	0.002096	0	0
MYBPC2	4606	broad.mit.edu	37	19	50958509	50958509	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:50958509G>A	uc002psf.2	+	19	2210	c.2159G>A	c.(2158-2160)GGG>GAG	p.G720E		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	720	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		AATGCTATAGGGGTCTCCCAG	0.478000													67	46					0	0	0.003610	0	0
CEACAM18	729767	broad.mit.edu	37	19	51984693	51984693	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:51984693G>A	uc002pwv.1	+	4	630	c.630G>A	c.(628-630)GTG>GTA	p.V210V		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	210						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GCTCCCTGGTGGAGAACATGG	0.502000													17	33					0	0	0.004990	0	0
ZNF577	84765	broad.mit.edu	37	19	52376081	52376081	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:52376081C>A	uc010yde.1	-	7	1553	c.1162G>T	c.(1162-1164)GAG>TAG	p.E388*	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Nonsense_Mutation_p.E329*|ZNF577_uc002pxv.2_Nonsense_Mutation_p.E381*|ZNF577_uc002pxw.2_Nonsense_Mutation_p.E322*	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	388					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		GAAGGTTTCTCCACCGTCAGT	0.433000													38	106					6.21074e-16	8.91939e-16	0.002852	1	0
VN1R4	317703	broad.mit.edu	37	19	53770138	53770138	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:53770138T>C	uc010ydu.1	-	1	781	c.781A>G	c.(781-783)AAT>GAT	p.N261D		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	261	Extracellular (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		CTATTGGGATTATCCAAAAGA	0.458000										HNSCC(26;0.072)			14	14					0	0	0.002450	0	0
ZNF845	91664	broad.mit.edu	37	19	53855350	53855350	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:53855350G>A	uc010ydv.1	+	4	1539	c.1422G>A	c.(1420-1422)AAG>AAA	p.K474K	ZNF845_uc010ydw.1_Silent_p.K474K	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	474	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATTGTGGCAAGACCTTCAGTC	0.378000													21	7					0	0	0.001882	0	0
ZNF845	91664	broad.mit.edu	37	19	53855609	53855609	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:53855609C>G	uc010ydv.1	+	4	1798	c.1681C>G	c.(1681-1683)CGT>GGT	p.R561G	ZNF845_uc010ydw.1_Missense_Mutation_p.R561G	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	561	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAAAGCCTTTCGTGGGCAGTC	0.418000													20	9					0	0	0.008871	0	0
NLRP2	55655	broad.mit.edu	37	19	55493636	55493636	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:55493636G>A	uc002qij.2	+	6	656	c.570G>A	c.(568-570)AAG>AAA	p.K190K	NLRP2_uc010yfp.1_Silent_p.K167K|NLRP2_uc010esn.2_Silent_p.K166K|NLRP2_uc010eso.2_Silent_p.K187K|NLRP2_uc010esp.2_Silent_p.K168K	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	190					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		AGAGATACAAGATGCTGATCC	0.542000													42	119					0	0	0.003214	0	0
HSPBP1	23640	broad.mit.edu	37	19	55789055	55789056	+	Silent	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:55789055_55789056GG>AA	uc002qjx.2	-	2	617_618	c.507_508CC>TT	c.(505-510)GCCCTG>GCTTTG	p.169_170AL>AL	HSPBP1_uc002qjy.2_Silent_p.123_124AL>AL|HSPBP1_uc002qkb.2_Silent_p.123_124AL>AL|HSPBP1_uc002qka.2_Silent_p.123_124AL>AL|HSPBP1_uc002qkd.2_Silent_p.123_124AL>AL|HSPBP1_uc002qkc.2_Silent_p.123_124AL>AL	NM_012267	NP_036399	Q9NZL4	HPBP1_HUMAN	hsp70-interacting protein	126_127					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein folding		enzyme inhibitor activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		AGCAGCTCCAGGGCCCCCTCTC	0.663000													6	3					0	0	0.004672	0	0
NLRP13	126204	broad.mit.edu	37	19	56423635	56423635	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:56423635G>A	uc010ygg.1	-	5	1573	c.1548C>T	c.(1546-1548)CTC>CTT	p.L516L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	516	NACHT.						ATP binding	p.L516F(1)		skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TGAACTCGTAGAGAGAATCAA	0.453000													15	39					0	0	0.004007	0	0
PEG3	5178	broad.mit.edu	37	19	57335018	57335018	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:57335018C>T	uc002qnu.2	-	2	775	c.424G>A	c.(424-426)GAC>AAC	p.D142N	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Missense_Mutation_p.D16N|ZIM2_uc002qnq.2_Missense_Mutation_p.D16N|ZIM2_uc010etp.2_Missense_Mutation_p.D16N|ZIM2_uc010ygs.1_Missense_Mutation_p.D16N|PEG3_uc002qnt.2_Missense_Mutation_p.D142N|PEG3_uc002qnv.2_Missense_Mutation_p.D142N|PEG3_uc002qnw.2_Missense_Mutation_p.D16N|PEG3_uc002qnx.2_Missense_Mutation_p.D16N|PEG3_uc010etr.2_Missense_Mutation_p.D142N	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	142					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GTCATGTCGTCGTCGCTGGTC	0.552000													37	34					0	0	0.006230	0	0
LPIN1	23175	broad.mit.edu	37	2	11919762	11919762	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:11919762G>A	uc010yjn.1	+	7	1114	c.840G>A	c.(838-840)CAG>CAA	p.Q280Q	LPIN1_uc010yjm.1_Silent_p.Q365Q|LPIN1_uc002rbt.2_Silent_p.Q280Q|LPIN1_uc002rbs.2_Silent_p.Q316Q	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	280					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		AGCTGCCGCAGGCTGCTAAGG	0.463000											OREG0014444	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	37					0	0	0.006122	0	0
KCNS3	3790	broad.mit.edu	37	2	18113307	18113307	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:18113307C>T	uc002rcv.2	+	3	1483	c.1032C>T	c.(1030-1032)TCC>TCT	p.S344S	KCNS3_uc002rcw.2_Silent_p.S344S	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	344	Helical; Name=Segment S5; (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTATCTACTCCGTGGAGAAAG	0.537000													49	30					0	0	0.003610	0	0
BIRC6	57448	broad.mit.edu	37	2	32828126	32828126	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:32828126T>G	uc010ezu.2	+	71	14180	c.14046T>G	c.(14044-14046)AAT>AAG	p.N4682K		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4682	Ubiquitin-conjugating.				anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					AGAAGTGGAATCCTCAGACCT	0.328000													9	30					0	0	0.006214	0	0
COX7A2L	9167	broad.mit.edu	37	2	42578482	42578483	+	Missense_Mutation	DNP	GG	AA	AA	rs145811069	byFrequency	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:42578482_42578483GG>AA	uc002rsk.2	-	3	276_277	c.221_222CC>TT	c.(220-222)CCC>CTT	p.P74L	COX7A2L_uc002rsl.2_RNA	NM_004718	NP_004709	O14548	COX7R_HUMAN	cytochrome c oxidase subunit VIIa polypeptide 2	74					respiratory electron transport chain	mitochondrial respiratory chain	cytochrome-c oxidase activity|electron carrier activity				0						TCAGGTAGACGGGCACACCATC	0.446000													12	29					0	0	0.004672	0	0
FBXO11	80204	broad.mit.edu	37	2	48066079	48066079	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:48066079G>A	uc010fbl.2	-	4	368	c.254C>T	c.(253-255)TCT>TTT	p.S85F	FBXO11_uc002rwe.2_Missense_Mutation_p.S85F|FBXO11_uc002rwf.2_Missense_Mutation_p.S85F|FBXO11_uc002rwg.1_Missense_Mutation_p.S85F	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	169	F-box.				ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAGCAAGTAAGAGAAGATTTT	0.378000													24	23					0	0	0.003954	0	0
ATP6V1B1	525	broad.mit.edu	37	2	71191956	71191956	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:71191956G>A	uc002shj.2	+	13	1426	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K	ATP6V1B1_uc010fdv.2_Missense_Mutation_p.E430K|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Missense_Mutation_p.E405K	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	447					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						GCTCTACCTGGAATTCCTGCA	0.582000											OREG0014686	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	36					0	0	0.001368	0	0
SLC5A7	60482	broad.mit.edu	37	2	108609495	108609495	+	Silent	SNP	A	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:108609495A>G	uc002tdv.2	+	4	636	c.360A>G	c.(358-360)CAA>CAG	p.Q120Q	SLC5A7_uc010ywm.1_5'UTR|SLC5A7_uc010fjj.2_Silent_p.Q120Q|SLC5A7_uc010ywn.1_Silent_p.Q7Q	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	120	Extracellular (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	CGTTTCAGCAAATCTATGGAA	0.443000													24	49					0	0	0.003330	0	0
RGPD5	84220	broad.mit.edu	37	2	113147106	113147106	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:113147106C>T	uc002ths.1	-	20	3493	c.3416G>A	c.(3415-3417)GGT>GAT	p.G1139D	RGPD8_uc010fkk.1_Missense_Mutation_p.G999D|RGPD5_uc002tht.1_Missense_Mutation_p.G390D	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1139	RanBD1 1.				intracellular transport	cytoplasm	binding				0						TTTGGCATCACCATCAGAGAA	0.453000													70	223					0	0	0.003610	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612000													5	8					0	0	0.001984	0	0
SCTR	6344	broad.mit.edu	37	2	120236412	120236412	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:120236412G>A	uc002tma.2	-	3	502	c.276C>T	c.(274-276)TTC>TTT	p.F92F	SCTR_uc002tlz.2_5'UTR	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	92	Extracellular (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	GCATCCGGAGGAATCTCGGGC	0.617000													29	12					0	0	0.008361	0	0
PROC	5624	broad.mit.edu	37	2	128186241	128186241	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:128186241C>T	uc002tok.2	+	9	1178	c.1105C>T	c.(1105-1107)CCG>TCG	p.P369S	PROC_uc002tol.2_Missense_Mutation_p.P390S|PROC_uc010yzi.1_Missense_Mutation_p.P425S|PROC_uc010yzj.1_Missense_Mutation_p.P264S|PROC_uc010yzk.1_Missense_Mutation_p.P424S|PROC_uc002tom.2_Missense_Mutation_p.P403S	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	369	Peptidase S1.		P -> L (in ADPROCD; Osaka-6).		blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	TCCCGTGGTCCCGCACAATGA	0.612000													37	94					0	0	0.004289	0	0
UGGT1	56886	broad.mit.edu	37	2	128877960	128877960	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:128877960G>A	uc002tps.2	+	9	1081	c.903G>A	c.(901-903)TTG>TTA	p.L301L	UGGT1_uc010fme.1_Silent_p.L176L|UGGT1_uc002tpr.2_Silent_p.L277L	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	301					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						AGGGACAGTTGAAAGAACTCA	0.413000													43	110					0	0	0.003610	0	0
THSD7B	80731	broad.mit.edu	37	2	137814554	137814554	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:137814554G>A	uc002tva.1	+	2	611	c.611G>A	c.(610-612)GGG>GAG	p.G204E	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.G94E	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGTCCTCTTGGGGAAGAGGAA	0.463000													54	120					0	0	0.003610	0	0
THSD7B	80731	broad.mit.edu	37	2	138169234	138169234	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:138169234G>C	uc002tva.1	+	13	2658	c.2658G>C	c.(2656-2658)GAG>GAC	p.E886D	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.E776D	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CTCTAGTGGAGACAGAACTAT	0.433000													23	61					0	0	0.002299	0	0
NXPH2	11249	broad.mit.edu	37	2	139428742	139428742	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:139428742G>A	uc002tvi.2	-	2	545	c.545C>T	c.(544-546)TCC>TTC	p.S182F		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	182	V (Cys-rich).				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		GAAAGATTTGGATTCCTTGGT	0.483000													11	11					0	0	0.000978	0	0
KIF5C	3800	broad.mit.edu	37	2	149853801	149853801	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:149853801C>T	uc010zbu.1	+	18	2415	c.2047C>T	c.(2047-2049)CAG>TAG	p.Q683*	KIF5C_uc002tws.1_RNA|KIF5C_uc002twt.2_Nonsense_Mutation_p.Q235*|KIF5C_uc002twu.1_5'Flank	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	683					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		AGTCAGCTTCCAGGATAAGGA	0.413000													12	12					0	0	0.002450	0	0
NEB	4703	broad.mit.edu	37	2	152348943	152348944	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:152348943_152348944GG>AA	uc010fnx.2	-	144	19453_19454	c.19262_19263CC>TT	c.(19261-19263)CCC>CTT	p.P6421L	NEB_uc002txr.2_Missense_Mutation_p.P2751L|RIF1_uc002txp.2_Intron|NEB_uc010zbz.1_Missense_Mutation_p.P190L|NEB_uc002txq.2_Missense_Mutation_p.P300L|NEB_uc010zca.1_Missense_Mutation_p.P252L|NEB_uc010zcb.1_Missense_Mutation_p.P190L	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6421	Nebulin 177.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GTCTCATCTCGGGGGTATCCAA	0.485000													17	28					0	0	0.004672	0	0
XIRP2	129446	broad.mit.edu	37	2	168105182	168105182	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:168105182C>T	uc002udx.2	+	8	7298	c.7280C>T	c.(7279-7281)CCC>CTC	p.P2427L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P2252L|XIRP2_uc010fpq.2_Missense_Mutation_p.P2205L|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2252					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TTGCCCAAACCCAAACTTCCC	0.408000													57	51					0	0	0.003610	0	0
TLK1	9874	broad.mit.edu	37	2	171863068	171863068	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:171863068G>A	uc002ugn.2	-	17	2156	c.1684C>T	c.(1684-1686)CGG>TGG	p.R562W	TLK1_uc002ugo.2_Missense_Mutation_p.R583W|TLK1_uc002ugp.2_Missense_Mutation_p.R514W|TLK1_uc002ugq.2_RNA|TLK1_uc010zdn.1_Missense_Mutation_p.R466W	NM_012290	NP_036422	Q9UKI8	TLK1_HUMAN	tousled-like kinase 1 isoform 1	562	Protein kinase.				cell cycle|chromatin modification|intracellular protein transport|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						ACAATAGACCGAGCTTCTTTC	0.348000													66	37					0	0	0.003610	0	0
PDE11A	50940	broad.mit.edu	37	2	178704997	178704997	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:178704997T>A	uc002ulq.2	-	6	1799	c.1481A>T	c.(1480-1482)GAT>GTT	p.D494V	PDE11A_uc002ulp.2_Missense_Mutation_p.D50V|PDE11A_uc002ulr.2_Missense_Mutation_p.D244V|PDE11A_uc002uls.1_Missense_Mutation_p.D136V|PDE11A_uc002ult.1_Missense_Mutation_p.D244V|PDE11A_uc002ulu.1_Missense_Mutation_p.D136V	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	494	GAF 2.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			AAAGCGCGGATCCTGGTAGGC	0.453000									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				23	17					0	0	0.002299	0	0
TTN	7273	broad.mit.edu	37	2	179395891	179395891	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:179395891C>T	uc010zfg.1	-	307	97971	c.97747G>A	c.(97747-97749)GAC>AAC	p.D32583N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D26278N|TTN_uc010zfi.1_Missense_Mutation_p.D26211N|TTN_uc010zfj.1_Missense_Mutation_p.D26086N|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33510							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATCGGTGTCACAAGAAAAC	0.507000													52	144					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179457349	179457349	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:179457349C>T	uc010zfg.1	-	250	51903	c.51679G>A	c.(51679-51681)GAA>AAA	p.E17227K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E10922K|TTN_uc010zfi.1_Missense_Mutation_p.E10855K|TTN_uc010zfj.1_Missense_Mutation_p.E10730K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18154							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTGTTGTTCTCTTGCCATG	0.383000													21	71					0	0	0.001882	0	0
TTN	7273	broad.mit.edu	37	2	179605026	179605026	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:179605026C>T	uc010zfh.1	-	46	12645	c.12421G>A	c.(12421-12423)GAA>AAA	p.E4141K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4074K|TTN_uc010zfj.1_Missense_Mutation_p.E3949K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTGCATTTTCCAGTGGATTT	0.433000													20	57					0	0	0.002299	0	0
HECW2	57520	broad.mit.edu	37	2	197184050	197184050	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:197184050C>T	uc002utm.1	-	9	1747	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	HECW2_uc002utl.1_Missense_Mutation_p.E166K	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	522					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GAAGCAGCTTCGTGTGTGGAG	0.537000													10	43					0	0	0.006214	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202466469	202466469	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:202466469G>A	uc002uye.2	-	4	557	c.509C>T	c.(508-510)TCT>TTT	p.S170F	ALS2CR11_uc002uyf.2_Missense_Mutation_p.S170F|ALS2CR11_uc010fti.2_Missense_Mutation_p.S170F	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	170										large_intestine(1)|ovary(1)|skin(1)	3						TACCTGTACAGAAAAATACTT	0.299000													9	14					0	0	0.006214	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174952	207174952	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:207174952C>T	uc002vbp.2	+	5	5950	c.5700C>T	c.(5698-5700)GTC>GTT	p.V1900V		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1900							nucleic acid binding|zinc ion binding			ovary(3)	3						ATGATATTGTCTGTGGTATTT	0.473000													22	21					0	0	0.002780	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209180074	209180074	+	Missense_Mutation	SNP	C	T	T	rs149384342		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:209180074C>T	uc002vcz.2	+	15	2142	c.1984C>T	c.(1984-1986)CGT>TGT	p.R662C	PIKFYVE_uc010fun.1_Missense_Mutation_p.R343C|PIKFYVE_uc002vcy.1_Missense_Mutation_p.R606C	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	662					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CATGGATATCCGTCAGTTTGT	0.423000													12	11					0	0	0.001368	0	0
SPEG	10290	broad.mit.edu	37	2	220346119	220346120	+	Silent	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:220346119_220346120CC>TT	uc010fwg.2	+	27	5463_5464	c.5463_5464CC>TT	c.(5461-5466)TTCCTG>TTTTTG	p.1821_1822FL>FL		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1821_1822	Protein kinase 1.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		AGACCACATTCCTGAGCCTGAG	0.584000													12	37					0	0	0.004672	0	0
GIGYF2	26058	broad.mit.edu	37	2	233660923	233660923	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr2:233660923A>C	uc002vti.3	+	16	1968	c.1631A>C	c.(1630-1632)GAA>GCA	p.E544A	GIGYF2_uc010zmj.1_Missense_Mutation_p.E544A|GIGYF2_uc002vtg.2_Missense_Mutation_p.E538A|GIGYF2_uc002vtj.3_Missense_Mutation_p.E565A|GIGYF2_uc002vtk.3_Missense_Mutation_p.E544A|GIGYF2_uc002vth.3_Missense_Mutation_p.E538A|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.E375A	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	544	GYF.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		CCTCAGGGAGAAATTCAAGGC	0.378000													13	37					0	0	0.001855	0	0
OTOR	56914	broad.mit.edu	37	20	16729116	16729116	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr20:16729116G>A	uc002wpj.2	+	1	114	c.70G>A	c.(70-72)GAC>AAC	p.D24N	OTOR_uc002wpk.2_5'Flank	NM_020157	NP_064542	Q9NRC9	OTOR_HUMAN	otoraplin precursor	24					sensory perception of sound	extracellular region				ovary(1)|central_nervous_system(1)	2						AATATTTATGGACCGTCTAGC	0.363000													136	81					0	0	0.003610	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32194823	32194823	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr20:32194823C>T	uc002wzg.1	+	3	660	c.123C>T	c.(121-123)TCC>TCT	p.S41S	CBFA2T2_uc010zug.1_Intron|CBFA2T2_uc002wze.1_Silent_p.S32S|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Silent_p.S12S|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	41	Pro-rich.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						AGATACAGTCCAGATCCTCAC	0.522000													44	47					0	0	0.002852	0	0
GDF5	8200	broad.mit.edu	37	20	34025689	34025689	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr20:34025689A>T	uc002xck.1	-	1	339	c.20T>A	c.(19-21)CTC>CAC	p.L7H	GDF5_uc010gfc.1_Missense_Mutation_p.L7H|GDF5_uc010zvc.1_Missense_Mutation_p.L7H	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	7					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CAAGAAAGTGAGGAGTTTGGG	0.567000													14	20					0	0	0.002450	0	0
RIMS4	140730	broad.mit.edu	37	20	43386399	43386399	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr20:43386399G>A	uc002xms.2	-	4	363	c.363C>T	c.(361-363)ATC>ATT	p.I121I	RIMS4_uc010ggu.2_Silent_p.I122I	NM_182970	NP_892015	Q9H426	RIMS4_HUMAN	regulating synaptic membrane exocytosis 4	121	C2.				exocytosis|neurotransmitter transport	cell junction|synapse				ovary(4)|central_nervous_system(1)	5		Myeloproliferative disorder(115;0.0122)				CCTGCAGACCGATCTCCACAT	0.557000													39	43					0	0	0.006999	0	0
ZNFX1	57169	broad.mit.edu	37	20	47865830	47865830	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr20:47865830C>T	uc002xui.2	-	14	3978	c.3731G>A	c.(3730-3732)AGC>AAC	p.S1244N		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1244							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			AATGATCTTGCTCCACAGGGG	0.527000													20	72					0	0	0.008871	0	0
PCK1	5105	broad.mit.edu	37	20	56139630	56139630	+	Missense_Mutation	SNP	C	T	T	rs28359550	byFrequency	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr20:56139630C>T	uc002xyn.3	+	8	1442	c.1279C>T	c.(1279-1281)CCC>TCC	p.P427S	PCK1_uc010zzm.1_Missense_Mutation_p.P110S	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	427					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GGAAGGTGTTCCCATTGAAGG	0.567000													72	64					0	0	0.003610	0	0
LIME1	54923	broad.mit.edu	37	20	62369602	62369602	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr20:62369602G>A	uc002ygp.3	+	5	439	c.335G>A	c.(334-336)GGA>GAA	p.G112E	ZGPAT_uc002ygn.3_RNA|LIME1_uc011abi.1_Silent_p.R100R|SLC2A4RG_uc002ygq.2_5'Flank|SLC2A4RG_uc002ygr.2_5'Flank|SLC2A4RG_uc011abj.1_5'Flank|SLC2A4RG_uc002ygs.2_5'Flank	NM_017806	NP_060276	Q9H400	LIME1_HUMAN	Lck interacting transmembrane adaptor 1	112	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					GACATCACCGGACCGCAGGCA	0.711000													5	9					0	0	0.001984	0	0
LIPI	149998	broad.mit.edu	37	21	15538740	15538740	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr21:15538740C>T	uc002yjm.2	-	5	749	c.739G>A	c.(739-741)GAT>AAT	p.D247N	LIPI_uc010gkw.1_Intron	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	226					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GGATAAAAATCTATATGTCCC	0.343000													24	52					0	0	0.004656	0	0
B3GALT5	10317	broad.mit.edu	37	21	41033308	41033308	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr21:41033308C>T	uc002yyb.1	+	5	1414	c.822C>T	c.(820-822)TCC>TCT	p.S274S	B3GALT5_uc002yye.2_Silent_p.S274S|B3GALT5_uc002yyi.1_Silent_p.S274S|B3GALT5_uc002yyj.1_Silent_p.S274S|B3GALT5_uc002yyk.1_Silent_p.S274S|B3GALT5_uc002yyl.1_Silent_p.S274S|B3GALT5_uc002yym.1_Silent_p.S274S	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	274	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				TACGCTTCTCCGTATGCCTCT	0.562000													16	45					0	0	0.007413	0	0
DSCAM	1826	broad.mit.edu	37	21	41514628	41514628	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr21:41514628G>A	uc002yyq.1	-	18	3715	c.3263C>T	c.(3262-3264)CCC>CTC	p.P1088L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1088	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGGGTAACTGGGCACTGAAAT	0.388000													62	34					0	0	0.003610	0	0
PCNT	5116	broad.mit.edu	37	21	47860047	47860047	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr21:47860047C>T	uc002zji.3	+	42	9432	c.9325C>T	c.(9325-9327)CTG>TTG	p.L3109L	PCNT_uc002zjj.2_Silent_p.L2912L	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	3109	Interaction with NEK2.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					ACAGAGTTCCCTGAGGCGCCC	0.587000													61	26					0	0	0.003610	0	0
RGL4	266747	broad.mit.edu	37	22	24034591	24034591	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr22:24034591G>A	uc002zxn.2	+	2	1419	c.249G>A	c.(247-249)CGG>CGA	p.R83R	LOC91316_uc002zxh.3_RNA|LOC91316_uc002zxi.3_RNA|LOC91316_uc002zxk.3_Intron|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_Intron|LOC91316_uc002zxm.3_Intron|RGL4_uc002zxo.2_Silent_p.R83R|RGL4_uc002zxp.1_5'UTR|RGL4_uc002zxq.2_5'UTR	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	83					small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						CCCCGCAACGGTCATCTTTCC	0.547000													76	90					0	0	0.003610	0	0
CABIN1	23523	broad.mit.edu	37	22	24563275	24563275	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr22:24563275C>T	uc002zzi.1	+	32	5803	c.5676C>T	c.(5674-5676)ATC>ATT	p.I1892I	CABIN1_uc002zzj.1_Silent_p.I1813I|CABIN1_uc002zzl.1_Silent_p.I1892I|CABIN1_uc002zzm.1_Silent_p.I317I	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1892					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ACATGCTCATCAAGCAGGTGG	0.612000													27	50					0	0	0.008361	0	0
INPP5J	27124	broad.mit.edu	37	22	31521951	31521951	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr22:31521951C>T	uc003aju.3	+	2	1318	c.1226C>T	c.(1225-1227)TCC>TTC	p.S409F	INPP5J_uc010gwf.2_Missense_Mutation_p.S409F|INPP5J_uc003ajv.3_Missense_Mutation_p.S42F|INPP5J_uc003ajs.3_Missense_Mutation_p.S42F|INPP5J_uc011alk.1_Missense_Mutation_p.S342F|INPP5J_uc010gwg.2_Intron|INPP5J_uc003ajw.2_Intron|INPP5J_uc003ajt.3_Intron|INPP5J_uc003ajx.2_5'Flank|INPP5J_uc003ajy.2_5'Flank|INPP5J_uc003ajz.2_5'Flank	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	409						cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						CTGTCATCCTCCCCTTGGTCA	0.632000													14	24					0	0	0.004990	0	0
C22orf33	339669	broad.mit.edu	37	22	37398024	37398024	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr22:37398024G>A	uc003aqf.2	-	3	489	c.343C>T	c.(343-345)CCA>TCA	p.P115S	C22orf33_uc003aqe.2_Missense_Mutation_p.P30S	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	115											0						CCCTGGCATGGCTGAGCCCCC	0.622000													14	19					0	0	0.001855	0	0
CELSR1	9620	broad.mit.edu	37	22	46786311	46786311	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr22:46786311G>A	uc003bhw.1	-	17	6323	c.6323C>T	c.(6322-6324)TCC>TTC	p.S2108F	CELSR1_uc011arc.1_Missense_Mutation_p.S429F	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2108	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GTCCACGAAGGAGATGGTGGT	0.612000											OREG0026656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	12					0	0	0.006214	0	0
LMF2	91289	broad.mit.edu	37	22	50942015	50942015	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr22:50942015G>A	uc003blp.2	-	14	1960	c.1929C>T	c.(1927-1929)CTC>CTT	p.L643L	LMF2_uc010hba.2_Silent_p.L465L|LMF2_uc003blo.2_Silent_p.L618L	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	643	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCACGGCCATGAGGAGCCCCC	0.697000													9	6					0	0	0.004482	0	0
CHL1	10752	broad.mit.edu	37	3	423920	423920	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:423920G>A	uc003bou.2	+	16	2158	c.1887G>A	c.(1885-1887)CGG>CGA	p.R629R	CHL1_uc003bot.2_Silent_p.R645R|CHL1_uc003bow.1_Silent_p.R629R|CHL1_uc011asi.1_Silent_p.R645R|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	629	Fibronectin type-III 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		GGAGTGTTCGGCTGACCTGGG	0.408000													40	50					0	0	0.003610	0	0
GRIP2	80852	broad.mit.edu	37	3	14538038	14538038	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:14538038C>T	uc011avi.1	-	23	3004	c.3004G>A	c.(3004-3006)GTG>ATG	p.V1002M	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Missense_Mutation_p.V533M	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	904					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						TCGAGGGCCACCCTCTGCACG	0.557000													10	8					0	0	0.008291	0	0
KCNH8	131096	broad.mit.edu	37	3	19554559	19554559	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:19554559C>T	uc003cbk.1	+	13	2372	c.2177C>T	c.(2176-2178)TCC>TTC	p.S726F	KCNH8_uc010hex.1_Missense_Mutation_p.S187F	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	726	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						gaggCAGTCTCCCTCTCTCCC	0.408000													17	19					0	0	0.004990	0	0
ACAA1	30	broad.mit.edu	37	3	38169314	38169314	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:38169314C>T	uc003cht.2	-	7	796	c.589G>A	c.(589-591)GAG>AAG	p.E197K	ACAA1_uc003chu.2_Missense_Mutation_p.E164K|ACAA1_uc010hgy.2_Missense_Mutation_p.E156K|ACAA1_uc010hgz.2_Missense_Mutation_p.E197K|ACAA1_uc003chv.2_Missense_Mutation_p.E45K	NM_001607	NP_001598	P09110	THIK_HUMAN	acetyl-Coenzyme A acyltransferase 1 isoform a	197					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy	peroxisomal matrix	acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0523)|Kidney(284;0.0657)		TCCTGCTTCTCCCGTGAAATG	0.502000													38	52					0	0	0.006999	0	0
SNRK	54861	broad.mit.edu	37	3	43381975	43381975	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:43381975C>T	uc003cms.3	+	5	1260	c.928C>T	c.(928-930)CGA>TGA	p.R310*	SNRK_uc003cmt.3_Nonsense_Mutation_p.R310*|SNRK_uc010hik.2_Nonsense_Mutation_p.R310*|SNRK_uc011azr.1_Nonsense_Mutation_p.R104*	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	310	UBA.				myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		CATAGCGGATCGAGACGCCAT	0.483000													18	30					0	0	0.004990	0	0
C3orf23	285343	broad.mit.edu	37	3	44434432	44434432	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:44434432G>A	uc010him.2	+	6	903	c.658G>A	c.(658-660)GAT>AAT	p.D220N	C3orf23_uc003cnd.3_Missense_Mutation_p.D220N|C3orf23_uc003cne.3_Missense_Mutation_p.D76N	NM_173826	NP_776187	Q8N3R3	CC023_HUMAN	hypothetical protein LOC285343 isoform 1	220						mitochondrion				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		TCGTTTAAAAGATGAACTGTC	0.333000													40	63					0	0	0.007835	0	0
LIMD1	8994	broad.mit.edu	37	3	45637070	45637071	+	Silent	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:45637070_45637071CC>TT	uc003coq.2	+	1	748_749	c.699_700CC>TT	c.(697-702)TCCCTG>TCTTTG	p.233_234SL>SL		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	233_234					cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		GACAGCTCTCCCTGAGCTCCAG	0.629000													35	37					0	0	0.004672	0	0
CSPG5	10675	broad.mit.edu	37	3	47604201	47604201	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:47604201C>T	uc003crp.3	-	5	1766	c.1590G>A	c.(1588-1590)CTG>CTA	p.L530L	CSPG5_uc003crm.2_RNA|CSPG5_uc003crn.2_Silent_p.L365L|CSPG5_uc003cro.3_Silent_p.L503L|CSPG5_uc011bbb.1_Silent_p.L392L	NM_006574	NP_006565	O95196	CSPG5_HUMAN	chondroitin sulfate proteoglycan 5 (neuroglycan	530	Cytoplasmic (Potential).				cell differentiation|intracellular transport|nervous system development|regulation of growth	endoplasmic reticulum membrane|Golgi-associated vesicle membrane|integral to plasma membrane|membrane fraction	growth factor activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000266)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CCTCCTCTTTCAGGCAGGACT	0.502000													67	83					0	0	0.003610	0	0
DUSP7	1849	broad.mit.edu	37	3	52088053	52088053	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:52088053G>A	uc003dct.2	-	2	934	c.855C>T	c.(853-855)TTC>TTT	p.F285F	DUSP7_uc010hma.2_Silent_p.F285F	NM_001947	NP_001938	Q16829	DUS7_HUMAN	dual specificity phosphatase 7	285					inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein binding|protein tyrosine phosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;5.14e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CGCCGTGCTCGAAGGCGTTGG	0.562000													54	77					0	0	0.003610	0	0
TLR9	54106	broad.mit.edu	37	3	52256090	52256090	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:52256090G>A	uc003dda.1	-	2	2876	c.2242C>T	c.(2242-2244)CTG>TTG	p.L748L	TLR9_uc003ddb.2_Silent_p.L845L	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	748	Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	GCACTCGCCAGGGGCCCAAAC	0.617000													37	70					0	0	0.006999	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54914841	54914841	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:54914841C>T	uc003dhf.2	+	21	1911	c.1863C>T	c.(1861-1863)TCC>TCT	p.S621S	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.S527S|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.S355S|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	621	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TGGCGCTTTCCAGAGGTCATG	0.453000													109	154					0	0	0.003610	0	0
EPHA6	285220	broad.mit.edu	37	3	96962851	96962851	+	Silent	SNP	T	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:96962851T>A	uc010how.1	+	5	1369	c.1326T>A	c.(1324-1326)ATT>ATA	p.I442I	EPHA6_uc003drp.1_Silent_p.I442I	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	347	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CAGCCCTTATTTTGGAATGGA	0.408000													11	10					0	0	0.000978	0	0
DCBLD2	131566	broad.mit.edu	37	3	98600535	98600535	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:98600535G>A	uc003dtd.2	-	2	645	c.282C>T	c.(280-282)CCC>CCT	p.P94P	DCBLD2_uc003dte.2_Silent_p.P94P|DCBLD2_uc003dtf.1_RNA	NM_080927	NP_563615	Q96PD2	DCBD2_HUMAN	discoidin, CUB and LCCL domain containing 2	94	Extracellular (Potential).|CUB.				cell adhesion|intracellular receptor mediated signaling pathway|negative regulation of cell growth|wound healing	cell surface|integral to plasma membrane				ovary(2)|central_nervous_system(1)	3						CAGTGCTGTTGGGATAGGTCT	0.423000													77	125					0	0	0.003610	0	0
DZIP1L	199221	broad.mit.edu	37	3	137790660	137790660	+	Silent	SNP	C	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:137790660C>A	uc003erq.2	-	12	1803	c.1440G>T	c.(1438-1440)TCG>TCT	p.S480S	DZIP1L_uc003err.1_Silent_p.S480S	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	480						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						GAGTCTGAATCGAGATTCCCT	0.527000													69	90					5.80444e-35	8.44753e-35	0.003610	1	0
CLSTN2	64084	broad.mit.edu	37	3	140185541	140185541	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:140185541C>T	uc003etn.2	+	8	1502	c.1312C>T	c.(1312-1314)CGC>TGC	p.R438C	CLSTN2_uc003etm.2_Missense_Mutation_p.R438C	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	438	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						TGACACCTTTCGCCCCGCGGA	0.567000										HNSCC(16;0.037)			27	37					0	0	0.005443	0	0
MCF2L2	23101	broad.mit.edu	37	3	182933875	182933876	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:182933875_182933876GG>AA	uc003fli.1	-	22	2467_2468	c.2377_2378CC>TT	c.(2377-2379)CCA>TTA	p.P793L		NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	793	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			GGTTCTCTTTGGCCCATCCTGT	0.446000													29	47					0	0	0.004672	0	0
ST6GAL1	6480	broad.mit.edu	37	3	186760840	186760840	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:186760840C>T	uc003frb.2	+	4	781	c.349C>T	c.(349-351)CTA>TTA	p.L117L	ST6GAL1_uc003frc.2_Intron|ST6GAL1_uc003frd.2_Silent_p.L117L	NM_173216	NP_775323	P15907	SIAT1_HUMAN	ST6 beta-galactosamide	117	Lumenal (Potential).				humoral immune response|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			central_nervous_system(1)	1	all_cancers(143;2.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;8.53e-19)	GBM - Glioblastoma multiforme(93;0.0939)		GAAGAATTACCTAAGCATGAA	0.527000													15	39					0	0	0.003163	0	0
SST	6750	broad.mit.edu	37	3	187387014	187387014	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:187387014C>T	uc003frn.2	-	2	312	c.190G>A	c.(190-192)GAG>AAG	p.E64K		NM_001048	NP_001039	P61278	SMS_HUMAN	somatostatin preproprotein	64					digestion|G-protein coupled receptor protein signaling pathway|induction of apoptosis by hormones|negative regulation of cell proliferation|response to nutrient|synaptic transmission	extracellular space	hormone activity			pancreas(1)	1	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.00444)	Bromocriptine(DB01200)|Cysteamine(DB00847)	GCATCATTCTCCGTCTGGTTG	0.522000													114	164					0	0	0.003610	0	0
LOC100128023	100128023	broad.mit.edu	37	3	193711897	193711897	+	RNA	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr3:193711897C>T	uc011bss.1	-	1		c.131G>A				NR_027764				Homo sapiens developmental pluripotency associated 2 pseudogene (LOC100128023), non-coding RNA.												0						TCCATTTGTTCCATATTTGGG	0.373000													11	11					0	0	0.001855	0	0
PDE6B	5158	broad.mit.edu	37	4	651263	651263	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr4:651263G>A	uc003gap.2	+	10	1434	c.1381G>A	c.(1381-1383)GAC>AAC	p.D461N	PDE6B_uc003gao.3_Missense_Mutation_p.D461N|PDE6B_uc011buy.1_Missense_Mutation_p.D182N|uc003gaq.1_5'Flank	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	461					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GTGCGACAGGGACGAGATCCA	0.617000													32	8					0	0	0.002522	0	0
MFSD10	10227	broad.mit.edu	37	4	2933363	2933363	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr4:2933363G>A	uc003gfw.2	-	8	1256	c.942C>T	c.(940-942)CTC>CTT	p.L314L	MFSD10_uc003gfv.2_Silent_p.L4L|MFSD10_uc003gfx.2_Silent_p.L138L|MFSD10_uc003gfz.2_Silent_p.L314L|MFSD10_uc003gfy.2_RNA|MFSD10_uc003gga.2_Intron|MFSD10_uc003ggb.1_Silent_p.L314L|MFSD10_uc003ggc.2_Silent_p.L314L	NM_001120	NP_001111	Q14728	MFS10_HUMAN	major facilitator superfamily domain containing	314	Helical; (Potential).				apoptosis	integral to membrane	tetracycline transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		TGAGGCCGATGAGGAAAAACA	0.672000													11	2					0	0	0.008291	0	0
C4orf44	345222	broad.mit.edu	37	4	3255159	3255159	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr4:3255159C>T	uc003ggs.2	+	2	729	c.546C>T	c.(544-546)TTC>TTT	p.F182F	C4orf44_uc003ggt.2_Silent_p.F182F	NM_001042690	NP_001036155	Q6ZTZ1	CD044_HUMAN	hypothetical protein LOC345222 isoform a	182											0						AAGGCCGCTTCGAGGATGATC	0.622000													113	15					0	0	0.003610	0	0
SLC30A9	10463	broad.mit.edu	37	4	41992694	41992694	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr4:41992694C>T	uc003gwl.2	+	1	172	c.26C>T	c.(25-27)GCG>GTG	p.A9V	SLC30A9_uc011byx.1_5'UTR	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	9					nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						GCCGCCGCCGCGGCCCACAGA	0.697000													26	2					0	0	0.003271	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660489	77660490	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr4:77660489_77660490GG>AA	uc011cbx.1	+	5	2116_2117	c.1163_1164GG>AA	c.(1162-1164)CGG>CAA	p.R388Q	SHROOM3_uc011cbz.1_Missense_Mutation_p.R212Q|SHROOM3_uc003hkf.1_Missense_Mutation_p.R263Q|SHROOM3_uc003hkg.2_Missense_Mutation_p.R166Q	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	388					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CCTCCAGCTCGGAGTGACAGTT	0.619000													35	2					0	0	0.004672	0	0
KIAA1109	84162	broad.mit.edu	37	4	123160753	123160754	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr4:123160753_123160754CC>TT	uc003ieh.2	+	27	3961_3962	c.3916_3917CC>TT	c.(3916-3918)CCC>TTC	p.P1306F	KIAA1109_uc003iei.1_Missense_Mutation_p.P1059F|KIAA1109_uc010ins.1_Missense_Mutation_p.P649F|KIAA1109_uc003iek.2_5'UTR	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1306					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCTTAGATCTCCCTTGAAACGA	0.450000													56	5					0	0	0.004672	0	0
NAF1	92345	broad.mit.edu	37	4	164087677	164087677	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr4:164087677T>G	uc003iqj.2	-	1	397	c.203A>C	c.(202-204)CAG>CCG	p.Q68P	NAF1_uc010iqw.1_Missense_Mutation_p.Q68P|NAF1_uc003iqk.2_RNA	NM_138386	NP_612395	Q96HR8	NAF1_HUMAN	nuclear assembly factor 1 homolog isoform a	68					rRNA processing|snRNA pseudouridine synthesis	cytoplasm|nucleus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding			ovary(2)	2	all_hematologic(180;0.166)	Prostate(90;0.109)				CAGAACGGGCTGCAGAGGCTG	0.726000													8	0					0	0	0.008291	0	0
CCDC110	256309	broad.mit.edu	37	4	186380710	186380710	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr4:186380710G>C	uc003ixu.3	-	6	1107	c.1031C>G	c.(1030-1032)TCT>TGT	p.S344C	CCDC110_uc003ixv.3_Missense_Mutation_p.S307C|CCDC110_uc011ckt.1_Missense_Mutation_p.S344C	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	344						nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		TTCACTCTTAGATAACTTTTT	0.318000													51	4					0	0	0.003610	0	0
PRDM9	56979	broad.mit.edu	37	5	23526583	23526583	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:23526583C>T	uc003jgo.2	+	11	1568	c.1386C>T	c.(1384-1386)CTC>CTT	p.L462L		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	462					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GGTCCAAACTCTTGAATAAAA	0.463000										HNSCC(3;0.000094)			8	16					0	0	0.004482	0	0
SLC45A2	51151	broad.mit.edu	37	5	33964076	33964076	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:33964076G>A	uc003jid.2	-	3	700	c.608C>T	c.(607-609)GCC>GTC	p.A203V	SLC45A2_uc003jie.2_Missense_Mutation_p.A203V|SLC45A2_uc003jif.3_Intron|SLC45A2_uc011coe.1_Intron	NM_016180	NP_057264	Q9UMX9	S45A2_HUMAN	membrane-associated transporter protein isoform	203	Helical; Name=5; (Potential).				melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						CTCCAGATGGGCCCAGTCTAT	0.443000													19	24					0	0	0.001882	0	0
C7	730	broad.mit.edu	37	5	40936474	40936474	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:40936474G>A	uc003jmh.2	+	5	429	c.315G>A	c.(313-315)GGG>GGA	p.G105G	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	105	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				TTTGCAATGGGGATTCTGACT	0.453000													10	18					0	0	0.006214	0	0
DHX29	54505	broad.mit.edu	37	5	54593125	54593126	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:54593125_54593126GG>AA	uc003jpx.2	-	3	482_483	c.362_363CC>TT	c.(361-363)GCC>GTT	p.A121V	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	121				A -> D (in Ref. 3; CAH56172).			ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				GCAATTTTTTGGCAGTAAGTCT	0.312000													28	13					0	0	0.004672	0	0
TRIM23	373	broad.mit.edu	37	5	64914040	64914040	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:64914040C>T	uc003jty.2	-	2	210	c.124G>A	c.(124-126)GGA>AGA	p.G42R	TRIM23_uc003jtw.2_Missense_Mutation_p.G42R|TRIM23_uc003jtx.2_Missense_Mutation_p.G42R	NM_001656	NP_001647	P36406	TRI23_HUMAN	ADP-ribosylation factor domain protein 1 isoform	42	RING-type; degenerate.				interspecies interaction between organisms|small GTPase mediated signal transduction	Golgi membrane|lysosomal membrane	enzyme activator activity|GDP binding|GTP binding|GTPase activity|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Lung NSC(167;3.24e-06)|Prostate(74;0.0138)|Breast(144;0.0433)|Ovarian(174;0.0545)|Colorectal(97;0.234)		Lung(70;0.00473)		ACTTTGTCTCCTTGCAAAGAA	0.408000													48	15					0	0	0.003610	0	0
CD180	4064	broad.mit.edu	37	5	66480083	66480083	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:66480083C>T	uc003juy.2	-	3	736	c.588G>A	c.(586-588)CTG>CTA	p.L196L		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	196	Extracellular (Potential).				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		TGGCCTGCTCCAGAGACCTCA	0.413000													19	69					0	0	0.006122	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101726728	101726728	+	Silent	SNP	A	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:101726728A>C	uc003knn.2	-	11	2008	c.1836T>G	c.(1834-1836)CGT>CGG	p.R612R	SLCO6A1_uc003kno.2_Silent_p.R359R|SLCO6A1_uc003knp.2_Silent_p.R612R|SLCO6A1_uc003knq.2_Silent_p.R550R	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	612	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AGGCCAGAGAACGCAGTTTGT	0.333000													35	110					0	0	0.006999	0	0
PGGT1B	5229	broad.mit.edu	37	5	114566678	114566678	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:114566678G>A	uc003kqw.3	-	6	674	c.653C>T	c.(652-654)TCT>TTT	p.S218F	PGGT1B_uc003kqx.3_Missense_Mutation_p.S95F|PGGT1B_uc010jch.2_Intron	NM_005023	NP_005014	P53609	PGTB1_HUMAN	geranylgeranyltransferase type 1 beta	218	PFTB 2.				protein geranylgeranylation	CAAX-protein geranylgeranyltransferase complex	CAAX-protein geranylgeranyltransferase activity				0		all_cancers(142;0.000523)|all_epithelial(76;6.45e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		Epithelial(69;2.95e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.98e-08)|all cancers(49;3.1e-06)	Pravastatin(DB00175)	CTTACCATGAGATTCAAGTCC	0.333000													23	16					0	0	0.001786	0	0
FEM1C	56929	broad.mit.edu	37	5	114879096	114879096	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:114879096G>A	uc003krb.1	-	2	657	c.95C>T	c.(94-96)TCC>TTC	p.S32F		NM_020177	NP_064562	Q96JP0	FEM1C_HUMAN	feminization 1 homolog a	32						cytoplasm				breast(2)|ovary(1)	3		all_cancers(142;0.000575)|all_epithelial(76;9.98e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;2.5e-07)|Epithelial(69;2.66e-07)|all cancers(49;1.39e-05)		GATCAAGGAGGAAACCTCCTC	0.483000													44	25					0	0	0.002522	0	0
FBN2	2201	broad.mit.edu	37	5	127863631	127863631	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:127863631C>T	uc003kuu.2	-	4	905	c.466G>A	c.(466-468)GGT>AGT	p.G156S	FBN2_uc003kuv.2_Missense_Mutation_p.G123S|FBN2_uc003kuw.3_Missense_Mutation_p.G156S|FBN2_uc003kux.1_Missense_Mutation_p.G156S	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	156	EGF-like 2.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CAGGTCCCACCATTCATGCAT	0.368000													19	35					0	0	0.001523	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182850	140182850	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:140182850G>A	uc003lhf.2	+	1	2068	c.2068G>A	c.(2068-2070)GAA>AAA	p.E690K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.E690K	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	690	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACGGGCCCGGAAGCTGCACT	0.637000													36	23					0	0	0.005524	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255556	140255556	+	Missense_Mutation	SNP	C	T	T	rs17844352		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:140255556C>T	uc003lic.2	+	1	626	c.499C>T	c.(499-501)CTT>TTT	p.L167F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.L167F	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	167	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTAAACTCTCTTTTGACCTA	0.378000													18	52					0	0	0.007413	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730571	140730572	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:140730571_140730572CC>TT	uc003ljo.1	+	1	744_745	c.744_745CC>TT	c.(742-747)CTCCAA>CTTTAA	p.Q249*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Nonsense_Mutation_p.Q249*	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	249	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGTTAGCCTCCAAGAAAACGT	0.554000													42	26					0	0	0.004672	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147019236	147019236	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:147019236C>T	uc003loq.1	-	10	1871	c.1489G>A	c.(1489-1491)GAG>AAG	p.E497K	JAKMIP2_uc011dbx.1_Missense_Mutation_p.E455K|JAKMIP2_uc003lor.1_Missense_Mutation_p.E497K|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.E497K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	497	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCGTCTGCTCCTGTAGGAGG	0.458000													6	266					0	0	0.001168	0	0
FBXO38	81545	broad.mit.edu	37	5	147781989	147781989	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:147781989C>T	uc003lpf.1	+	5	625	c.505C>T	c.(505-507)CGT>TGT	p.R169C	FBXO38_uc003lpg.1_Missense_Mutation_p.R169C|FBXO38_uc003lph.2_Missense_Mutation_p.R169C	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	169						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGGAAATTTCGTAATCGTAA	0.353000													37	29					0	0	0.004878	0	0
SLC36A3	285641	broad.mit.edu	37	5	150666905	150666905	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:150666905C>T	uc003ltw.2	-	6	1029	c.610G>A	c.(610-612)GTG>ATG	p.V204M	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Missense_Mutation_p.V189M|SLC36A3_uc003ltx.2_Missense_Mutation_p.V245M	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	204	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGATAAACACCAACAGGATC	0.517000													17	67					0	0	0.004990	0	0
GLRA1	2741	broad.mit.edu	37	5	151239346	151239346	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:151239346C>T	uc003lut.2	-	4	763	c.476G>A	c.(475-477)AGA>AAA	p.R159K	GLRA1_uc003lur.2_Missense_Mutation_p.R159K|GLRA1_uc003lus.2_Missense_Mutation_p.R76K	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	159	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CAGAACTCACCTGATGCTGTA	0.517000													8	24					0	0	0.006214	0	0
KIF4B	285643	broad.mit.edu	37	5	154393924	154393924	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:154393924G>A	uc010jih.1	+	1	665	c.505G>A	c.(505-507)GAA>AAA	p.E169K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	169	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GGATCCTAAGGAAGGCATAAA	0.418000													35	112					0	0	0.004289	0	0
DOK3	79930	broad.mit.edu	37	5	176931637	176931637	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:176931637G>A	uc003mhk.2	-	6	843	c.838C>T	c.(838-840)CGT>TGT	p.R280C	DOK3_uc003mhh.3_Intron|DOK3_uc003mhi.3_Intron|DOK3_uc003mhj.3_Intron|DOK3_uc003mhl.2_Missense_Mutation_p.R224C	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	280	IRS-type PTB.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			TGGCAGCGACGGCCGGCCTCA	0.701000													11	10					0	0	0.008291	0	0
CNOT6	57472	broad.mit.edu	37	5	179996226	179996226	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:179996226G>A	uc003mlx.2	+	10	1493	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	CNOT6_uc010jld.2_Missense_Mutation_p.E382K|CNOT6_uc010jle.2_Missense_Mutation_p.E377K	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	382					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		GTTCCTCTCAGAAGTGAAGAA	0.398000													88	28					0	0	0.003610	0	0
FLT4	2324	broad.mit.edu	37	5	180041131	180041132	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:180041131_180041132CC>TT	uc003mma.3	-	24	3346_3347	c.3267_3268GG>AA	c.(3265-3270)AAGGTG>AAAATG	p.V1090M	FLT4_uc003mlz.3_Missense_Mutation_p.V1090M	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1090	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GTGGTGTACACCTTGTCGAAGA	0.624000									Congenital_Hereditary_Lymphedema				17	72					0	0	0.004672	0	0
BTNL8	79908	broad.mit.edu	37	5	180335636	180335636	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:180335636G>A	uc003mmp.2	+	2	334	c.100G>A	c.(100-102)GAG>AAG	p.E34K	BTNL8_uc003mmq.2_Missense_Mutation_p.E34K|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Missense_Mutation_p.E34K|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	34	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTTGGTGGGGGAGGACGCAGC	0.527000													50	34					0	0	0.003610	0	0
TBC1D7	51256	broad.mit.edu	37	6	13306733	13306733	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:13306733G>A	uc003naj.2	-	7	783	c.692C>T	c.(691-693)TCC>TTC	p.S231F	TBC1D7_uc011dis.1_Intron|TBC1D7_uc003nan.2_Missense_Mutation_p.S231F|TBC1D7_uc003nal.2_Missense_Mutation_p.S231F|TBC1D7_uc003nam.2_Missense_Mutation_p.S231F|TBC1D7_uc003nao.2_Missense_Mutation_p.S204F|TBC1D7_uc010jpd.2_Missense_Mutation_p.S185F|TBC1D7_uc003nap.2_3'UTR	NM_016495	NP_057579	Q9P0N9	TBCD7_HUMAN	TBC1 domain family, member 7 isoform a	231	Rab-GAP TBC.				positive regulation of protein ubiquitination	cytoplasmic membrane-bounded vesicle	protein binding|Rab GTPase activator activity			ovary(1)	1	Breast(50;0.0296)|Ovarian(93;0.0339)	all_hematologic(90;0.135)	Epithelial(50;0.0784)|BRCA - Breast invasive adenocarcinoma(129;0.13)|all cancers(50;0.21)			GATCTTACAGGATCCACTCAC	0.313000													67	76					0	0	0.003610	0	0
BTN2A2	10385	broad.mit.edu	37	6	26392817	26392817	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:26392817C>T	uc003nhq.2	+	8	1280	c.1194C>T	c.(1192-1194)GTC>GTT	p.V398V	BTN2A2_uc011dkg.1_3'UTR|BTN2A2_uc003nhr.2_Silent_p.V282V|BTN2A2_uc011dkh.1_Silent_p.V188V|BTN2A2_uc003nhs.2_Intron|BTN2A2_uc003nht.2_Silent_p.V398V|BTN2A2_uc011dki.1_3'UTR	NM_006995	NP_008926	Q8WVV5	BT2A2_HUMAN	butyrophilin, subfamily 2, member A2 isoform a	398	B30.2/SPRY.|Cytoplasmic (Potential).				negative regulation of activated T cell proliferation|negative regulation of cellular metabolic process|negative regulation of cytokine secretion	integral to membrane					0						CTGTGGGGGTCTGCAGACACA	0.557000													38	46					0	0	0.005524	0	0
LY6G6F	259215	broad.mit.edu	37	6	31675288	31675288	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:31675288C>T	uc003nwa.1	+	2	106	c.106C>T	c.(106-108)CCC>TCC	p.P36S	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Missense_Mutation_p.P36S	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	36	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						GCTGCCATGTCCCTCACCACC	0.572000													183	252					0	0	0.003610	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34826300	34826300	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:34826300C>T	uc003oju.3	+	14	2401	c.2167C>T	c.(2167-2169)CCC>TCC	p.P723S	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	723										ovary(3)	3						AGCCCCCTTCCCCCTGTCCAT	0.542000													13	65					0	0	0.002450	0	0
TULP1	7287	broad.mit.edu	37	6	35471586	35471586	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:35471586G>A	uc003okv.3	-	12	1164	c.1152C>T	c.(1150-1152)AAC>AAT	p.N384N	TULP1_uc003okw.3_Silent_p.N331N	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	384					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						GGTTCTGCCCGTTGTCAAAGA	0.617000													10	13					0	0	0.006214	0	0
MDGA1	266727	broad.mit.edu	37	6	37631839	37631839	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:37631839C>T	uc003onu.1	-	2	1290	c.111G>A	c.(109-111)GTG>GTA	p.V37V		NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	37	Ig-like 1.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						CCTCTTTCACCACACATGCCT	0.597000													46	69					0	0	0.003610	0	0
SLC22A7	10864	broad.mit.edu	37	6	43267376	43267376	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:43267376G>T	uc003out.2	+	4	614	c.515G>T	c.(514-516)CGG>CTG	p.R172L	SLC22A7_uc010jyl.1_Missense_Mutation_p.R170L|SLC22A7_uc003ous.2_Missense_Mutation_p.R170L	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	172						basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			TTTGGGCGGCGGCGTCTGCTG	0.577000													83	109					1.19196e-48	1.74251e-48	0.003610	1	0
DPPA5	340168	broad.mit.edu	37	6	74063756	74063756	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:74063756C>T	uc003pgs.1	-	2	118	c.113_splice	c.e2-1	p.G38_splice		NM_001025290	NP_001020461	A6NC42	DPPA5_HUMAN	developmental pluripotency associated 5						multicellular organismal development	cytoplasm	RNA binding				0						CCGTCCGGGCCTGTTGGGGAA	0.607000													12	36					0	0	0.001368	0	0
FHL5	9457	broad.mit.edu	37	6	97063574	97063574	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:97063574G>A	uc003pos.1	+	7	1186	c.781G>A	c.(781-783)GGT>AGT	p.G261S	FHL5_uc003pot.1_Missense_Mutation_p.G261S	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	261	LIM zinc-binding 4.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		CTCCTTGGTGGGTAAAGGCTT	0.483000													33	5					0	0	0.002445	0	0
AIM1	202	broad.mit.edu	37	6	106968006	106968006	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:106968006A>T	uc003prh.2	+	2	2186	c.1699A>T	c.(1699-1701)ATC>TTC	p.I567F		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	567							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CTCCCAGGTCATCCCAGAGAG	0.547000													26	2					0	0	0.003954	0	0
MICAL1	64780	broad.mit.edu	37	6	109770953	109770953	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:109770953G>A	uc003ptj.2	-	9	1595	c.1341C>T	c.(1339-1341)TCC>TCT	p.S447S	MICAL1_uc003ptk.2_Silent_p.S447S|MICAL1_uc010kdr.2_Silent_p.S361S|MICAL1_uc011eaq.1_Silent_p.S466S	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	447					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		TGTTTTCTGGGGATGTCTGTG	0.612000													39	8					0	0	0.008740	0	0
FAM184A	79632	broad.mit.edu	37	6	119341322	119341322	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:119341322G>A	uc003pyj.2	-	4	1501	c.1153C>T	c.(1153-1155)CAT>TAT	p.H385Y	FAM184A_uc003pyk.3_Missense_Mutation_p.H265Y|FAM184A_uc003pyl.3_Missense_Mutation_p.H265Y	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	385	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						ATTCCAATATGACCTATCCCC	0.308000													21	3					0	0	0.001882	0	0
EPB41L2	2037	broad.mit.edu	37	6	131190968	131190968	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:131190968G>A	uc003qch.2	-	15	2524	c.2342C>T	c.(2341-2343)CCC>CTC	p.P781L	EPB41L2_uc003qce.1_Missense_Mutation_p.P159L|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Missense_Mutation_p.P711L|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_Missense_Mutation_p.P711L|EPB41L2_uc003qcd.1_5'Flank|EPB41L2_uc003qcj.1_Missense_Mutation_p.P178L	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	781					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		TGCCGGGCGGGGTTCTTCCTC	0.582000													70	10					0	0	0.003610	0	0
PERP	64065	broad.mit.edu	37	6	138413187	138413187	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:138413187A>C	uc003qht.2	-	3	757	c.574T>G	c.(574-576)TCT>GCT	p.S192A		NM_022121	NP_071404	Q96FX8	PERP_HUMAN	PERP, TP53 apoptosis effector	192					apoptosis|cell adhesion	desmosome|Golgi apparatus|integral to membrane|nucleus					0	Breast(32;0.0799)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000878)|OV - Ovarian serous cystadenocarcinoma(155;0.000997)		AGTTAGGCAGATGTGTAGAAG	0.488000													19	0					0	0	0.007413	0	0
TXLNB	167838	broad.mit.edu	37	6	139564176	139564176	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:139564176C>T	uc011eds.1	-	10	1707	c.1542G>A	c.(1540-1542)GAG>GAA	p.E514E		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	514						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		GCGGGGTTGACTCTGGATGAT	0.522000													32	70					0	0	0.005524	0	0
TIAM2	26230	broad.mit.edu	37	6	155485620	155485621	+	Silent	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:155485620_155485621CC>TT	uc003qqb.2	+	10	3373_3374	c.2100_2101CC>TT	c.(2098-2103)AGCCTA>AGTTTA	p.700_701SL>SL	TIAM2_uc003qqe.2_Silent_p.700_701SL>SL|TIAM2_uc010kjj.2_Silent_p.233_234SL>SL|TIAM2_uc003qqf.2_Silent_p.52_53SL>SL|TIAM2_uc011efl.1_Silent_p.12_13SL>SL|TIAM2_uc003qqg.2_Silent_p.12_13SL>SL	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	700_701					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		ATCTGGCCAGCCTACAAGGTGG	0.525000													66	8					0	0	0.004672	0	0
NOX3	50508	broad.mit.edu	37	6	155732481	155732481	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:155732481C>T	uc003qqm.2	-	11	1425	c.1322G>A	c.(1321-1323)TGG>TAG	p.W441*		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	441	Cytoplasmic (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		CCGGCAAATCCAGTAGAAATA	0.313000													24	1					0	0	0.003954	0	0
TULP4	56995	broad.mit.edu	37	6	158923752	158923752	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:158923752C>T	uc003qrf.2	+	13	4414	c.3057C>T	c.(3055-3057)CCC>CCT	p.P1019P	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	1019					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		AGGGCGGGCCCGGGGGGGTGG	0.726000													6	0					0	0	0.001168	0	0
RPS6KA2	6196	broad.mit.edu	37	6	166923792	166923792	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:166923792G>A	uc003qvb.1	-	4	571	c.352C>T	c.(352-354)CAC>TAC	p.H118Y	RPS6KA2_uc011ego.1_Missense_Mutation_p.H29Y|RPS6KA2_uc010kkl.1_Missense_Mutation_p.H29Y|RPS6KA2_uc003qvc.1_Missense_Mutation_p.H126Y|RPS6KA2_uc003qvd.1_Missense_Mutation_p.H143Y|MIR1913_hsa-mir-1913|MI0008334_5'Flank	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	118	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		ATGAAGGGGTGATTCACTTCT	0.413000													28	5					0	0	0.001786	0	0
TCP10	6953	broad.mit.edu	37	6	167786682	167786682	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr6:167786682G>A	uc003qvv.1	-	8	1168	c.956C>T	c.(955-957)CCC>CTC	p.P319L	TCP10_uc003qvu.2_Intron	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	346						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		CTGTCTGGAGGGAGCGGCGTG	0.537000													23	26					0	0	0.003954	0	0
AMZ1	155185	broad.mit.edu	37	7	2748315	2748315	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:2748315G>A	uc003smr.1	+	4	927	c.566G>A	c.(565-567)TGG>TAG	p.W189*	AMZ1_uc003sms.1_Nonsense_Mutation_p.W189*|AMZ1_uc011jwa.1_5'UTR	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	189							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		CATGAGGCCTGGAGCTTCACC	0.652000													34	31					0	0	0.006999	0	0
HDAC9	9734	broad.mit.edu	37	7	18875586	18875586	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:18875586C>T	uc003suh.2	+	20	2682	c.2641C>T	c.(2641-2643)CCC>TCC	p.P881S	HDAC9_uc003sue.2_Missense_Mutation_p.P881S|HDAC9_uc003sui.2_Missense_Mutation_p.P884S|HDAC9_uc003suj.2_Missense_Mutation_p.P840S|HDAC9_uc003suk.2_Missense_Mutation_p.P129S	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	881	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CCTTGATCCTCCCATGGGAGA	0.448000													5	4					0	0	0.000602	0	0
DNAH11	8701	broad.mit.edu	37	7	21640510	21640511	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:21640510_21640511CC>TT	uc003svc.2	+	16	3248_3249	c.3217_3218CC>TT	c.(3217-3219)CCC>TTC	p.P1073F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1073	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TGAAGAAATTCCCGAACAACCA	0.406000									Kartagener_syndrome				54	56					0	0	0.004672	0	0
GPNMB	10457	broad.mit.edu	37	7	23293816	23293816	+	Silent	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:23293816T>C	uc003swc.2	+	3	413	c.252T>C	c.(250-252)AGT>AGC	p.S84S	GPNMB_uc003swa.2_Silent_p.S84S|GPNMB_uc003swb.2_Silent_p.S84S|GPNMB_uc011jyy.1_Silent_p.S84S|GPNMB_uc011jyz.1_Intron	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	84	Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			TCCTGACCAGTGACTCACCAG	0.468000													62	79					0	0	0.003610	0	0
CDK13	8621	broad.mit.edu	37	7	40027485	40027485	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:40027485C>T	uc003thh.3	+	2	1781	c.1499C>T	c.(1498-1500)ACG>ATG	p.T500M	CDK13_uc003thi.3_Missense_Mutation_p.T500M|CDK13_uc011kbf.1_Translation_Start_Site	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	500					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						AAGGGGAACACGGAAACTAGT	0.373000													12	19					0	0	0.004990	0	0
ZNF713	349075	broad.mit.edu	37	7	56007168	56007168	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:56007168C>T	uc003trc.1	+	4	800	c.762C>T	c.(760-762)TTC>TTT	p.F254F	ZNF713_uc003tra.1_Silent_p.F267F|MRPS17_uc003trb.2_Intron	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	254					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GGAAGGCCTTCAGCCACACCT	0.423000													37	44					0	0	0.006230	0	0
AKAP9	10142	broad.mit.edu	37	7	91631892	91631892	+	Silent	SNP	A	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:91631892A>G	uc003ulg.2	+	8	2886	c.2661A>G	c.(2659-2661)TTA>TTG	p.L887L	AKAP9_uc003ule.2_Silent_p.L899L|AKAP9_uc003ulf.2_Silent_p.L887L|AKAP9_uc003uli.2_Silent_p.L512L	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	899	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AACAGGAATTAGAGTATAAAA	0.294000			T	BRAF	papillary thyroid								35	45					0	0	0.006230	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94855338	94855338	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:94855338G>A	uc003unp.2	+	7	2238	c.1956G>A	c.(1954-1956)ATG>ATA	p.M652I	PPP1R9A_uc010lfj.2_Missense_Mutation_p.M674I|PPP1R9A_uc011kif.1_Missense_Mutation_p.M652I|PPP1R9A_uc003unq.2_Missense_Mutation_p.M652I|PPP1R9A_uc011kig.1_Missense_Mutation_p.M652I	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	652	Interacts with TGN38 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GCAGCGACATGGCCATTGAAG	0.483000										HNSCC(28;0.073)			31	37					0	0	0.001786	0	0
TRRAP	8295	broad.mit.edu	37	7	98535353	98535353	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:98535353G>A	uc003upp.2	+	30	4523	c.4314G>A	c.(4312-4314)CGG>CGA	p.R1438R	TRRAP_uc011kis.1_Silent_p.R1438R|TRRAP_uc003upr.2_Silent_p.R1130R	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1438					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity	p.R1438W(1)		ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GAGATTACCGGAGCTTGACGC	0.413000													25	28					0	0	0.004656	0	0
ARPC1B	10095	broad.mit.edu	37	7	98985838	98985838	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:98985838G>A	uc003upz.2	+	4	435	c.346G>A	c.(346-348)GGC>AGC	p.G116S	ARPC1A_uc011kit.1_RNA|ARPC1B_uc003uqa.2_Missense_Mutation_p.G116S|ARPC1B_uc003uqb.2_Missense_Mutation_p.G116S|ARPC1B_uc003uqc.2_Missense_Mutation_p.G116S|ARPC1B_uc003uqd.2_5'Flank	NM_005720	NP_005711	O15143	ARC1B_HUMAN	actin related protein 2/3 complex subunit 1B	116	WD 3.				cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cytoplasm	actin binding|structural constituent of cytoskeleton				0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			TGTGGGCAGCGGCTCTCGTGT	0.632000													10	35					0	0	0.001368	0	0
TFR2	7036	broad.mit.edu	37	7	100226912	100226912	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:100226912C>T	uc003uvv.1	-	10	1395	c.1354G>A	c.(1354-1356)GAG>AAG	p.E452K	TFR2_uc010lhc.1_5'UTR|TFR2_uc003uvu.1_Missense_Mutation_p.E281K	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	452	Extracellular (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CGCACCAGCTCCAGGAGTATA	0.637000													35	33					0	0	0.004878	0	0
ZAN	7455	broad.mit.edu	37	7	100392822	100392822	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:100392822C>T	uc003uwj.2	+	46	8295	c.8130C>T	c.(8128-8130)AGC>AGT	p.S2710S	ZAN_uc003uwk.2_Silent_p.S2619S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Silent_p.S658S	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2710	EGF-like.|VWFC 5.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TTGCAGAAAGCCCGTGTCTGC	0.647000													4	14					0	0	0.000248	0	0
MUC17	140453	broad.mit.edu	37	7	100682642	100682642	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:100682642G>A	uc003uxp.1	+	3	7998	c.7945G>A	c.(7945-7947)GAG>AAG	p.E2649K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2649	Extracellular (Potential).|59 X approximate tandem repeats.|42.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGCCAGTTCTGAGGCTAGCAC	0.463000													136	9					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100696390	100696390	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:100696390C>T	uc003uxp.1	+	10	13280	c.13227C>T	c.(13225-13227)CTC>CTT	p.L4409L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4409	Helical; (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGGTAGCTCTCCTGATGCTCG	0.597000													14	29					0	0	0.004990	0	0
CBLL1	79872	broad.mit.edu	37	7	107399243	107399243	+	Missense_Mutation	SNP	C	T	T	rs150861689		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:107399243C>T	uc003veq.2	+	6	1426	c.1096C>T	c.(1096-1098)CAC>TAC	p.H366Y	CBLL1_uc011kme.1_Missense_Mutation_p.H245Y|CBLL1_uc011kmf.1_Missense_Mutation_p.H365Y	NM_024814	NP_079090	Q75N03	HAKAI_HUMAN	Cas-Br-M (murine) ecotropic retroviral	366	Pro-rich.				cell-cell adhesion|negative regulation of cell adhesion|positive regulation of cell migration|positive regulation of endocytosis		protein binding|ubiquitin-protein ligase activity|zinc ion binding	p.H366Y(1)		ovary(2)|skin(2)|lung(1)	5						AGGTACTCCTCACTTGGTATA	0.522000													108	120					0	0	0.003610	0	0
UBN2	254048	broad.mit.edu	37	7	138946272	138946272	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:138946272C>T	uc011kqr.1	+	6	1180	c.1180C>T	c.(1180-1182)CAG>TAG	p.Q394*	UBN2_uc003vuv.2_Nonsense_Mutation_p.Q117*	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	394										ovary(1)|skin(1)	2						TGAGCTGTTTCAGGAAGCTGA	0.493000													63	89					0	0	0.003610	0	0
TRPV6	55503	broad.mit.edu	37	7	142571386	142571386	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:142571386C>T	uc003wbx.1	-	13	1819	c.1603G>A	c.(1603-1605)GAG>AAG	p.E535K	TRPV6_uc003wbw.1_Missense_Mutation_p.E321K|TRPV6_uc010lou.1_Missense_Mutation_p.E406K	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	535					regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					AGGAACAGCTCGAAGGTGCTG	0.557000													81	128					0	0	0.003610	0	0
TRPV6	55503	broad.mit.edu	37	7	142572287	142572287	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:142572287C>T	uc003wbx.1	-	11	1625	c.1409G>A	c.(1408-1410)CGA>CAA	p.R470Q	TRPV6_uc003wbw.1_Missense_Mutation_p.R256Q|TRPV6_uc010lou.1_Missense_Mutation_p.R341Q	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	470	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CTGGAATCCTCGGGCGAAGTA	0.557000													52	68					0	0	0.003610	0	0
RHEB	6009	broad.mit.edu	37	7	151216560	151216561	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr7:151216560_151216561CC>TT	uc003wkh.1	-	1	450_451	c.37_38GG>AA	c.(37-39)GGC>AAC	p.G13N		NM_005614	NP_005605	Q15382	RHEB_HUMAN	Ras homolog enriched in brain precursor	13					cell cycle arrest|insulin receptor signaling pathway|positive regulation of TOR signaling cascade|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|metal ion binding|protein binding			large_intestine(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.00306)	UCEC - Uterine corpus endometrioid carcinoma (81;0.174)		AGACCGGTAGCCCAGGATCGCG	0.639000													8	6					0	0	0.004672	0	0
CLDN23	137075	broad.mit.edu	37	8	8560185	8560185	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:8560185C>T	uc003wsi.2	+	1	520	c.277C>T	c.(277-279)CTG>TTG	p.L93L		NM_194284	NP_919260	Q96B33	CLD23_HUMAN	claudin 23	93	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.071)|READ - Rectum adenocarcinoma(644;0.238)		CGCCACGGTCCTGGGGCTTCT	0.716000													9	4					0	0	0.006214	0	0
DLC1	10395	broad.mit.edu	37	8	12957028	12957029	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:12957028_12957029CC>TT	uc003wwm.2	-	9	3261_3262	c.2817_2818GG>AA	c.(2815-2820)TCGGTC>TCAATC	p.V940I	DLC1_uc003wwk.1_Missense_Mutation_p.V503I|DLC1_uc003wwl.1_Missense_Mutation_p.V537I|DLC1_uc011kxx.1_Missense_Mutation_p.V429I	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	940					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						CAGGGAGAGACCGAGTCCAGGG	0.559000													18	26					0	0	0.004672	0	0
NEFL	4747	broad.mit.edu	37	8	24813811	24813811	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:24813811C>T	uc003xee.2	-	1	321	c.219G>A	c.(217-219)CTG>CTA	p.L73L		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	73	Head.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTACCTGGCTCAGGTCGAGGT	0.627000													7	4					0	0	0.003080	0	0
ZNF395	55893	broad.mit.edu	37	8	28210825	28210825	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:28210825G>A	uc003xgq.2	-	5	772	c.684C>T	c.(682-684)TCC>TCT	p.S228S	ZNF395_uc003xgt.2_Silent_p.S228S|ZNF395_uc003xgr.2_Silent_p.S228S|ZNF395_uc003xgs.2_Silent_p.S228S	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	228					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		GCGAGGGGGTGGAGACACCAC	0.622000													14	5					0	0	0.003163	0	0
WRN	7486	broad.mit.edu	37	8	31014939	31014939	+	Missense_Mutation	SNP	C	T	T	rs142614369	byFrequency	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:31014939C>T	uc003xio.3	+	33	4663	c.3875C>T	c.(3874-3876)TCC>TTC	p.S1292F	WRN_uc010lvk.2_Missense_Mutation_p.S759F	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1292					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		ATGCACTTATCCCAAGCGGTG	0.498000			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				23	16					0	0	0.002780	0	0
DDHD2	23259	broad.mit.edu	37	8	38099838	38099838	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:38099838G>A	uc003xlb.2	+	7	1160	c.783G>A	c.(781-783)CAG>CAA	p.Q261Q	DDHD2_uc003xlc.2_Silent_p.Q261Q|DDHD2_uc011lbl.1_Silent_p.Q73Q	NM_015214	NP_056029	O94830	DDHD2_HUMAN	DDHD domain containing 2 isoform 1	261					lipid catabolic process	centrosome	hydrolase activity|metal ion binding			large_intestine(1)|ovary(1)	2	Colorectal(12;0.000442)	all_lung(54;0.0657)|Lung NSC(58;0.175)	BRCA - Breast invasive adenocarcinoma(5;3.76e-25)|COAD - Colon adenocarcinoma(9;0.0977)			AAAATCAGCAGATTGGGAGGG	0.388000													6	19					0	0	0.001168	0	0
PCMTD1	115294	broad.mit.edu	37	8	52733192	52733192	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:52733192C>T	uc003xqx.3	-	6	1134	c.793G>A	c.(793-795)GCC>ACC	p.A265T	PCMTD1_uc011ldm.1_Missense_Mutation_p.A135T|PCMTD1_uc003xqw.3_Missense_Mutation_p.A265T|PCMTD1_uc011ldn.1_Missense_Mutation_p.A77T|PCMTD1_uc010lya.2_Missense_Mutation_p.A189T	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	265						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				ATCCCCTTGGCCTGCATCTCA	0.408000													5	65					0	0	0.001168	0	0
CHD7	55636	broad.mit.edu	37	8	61741297	61741297	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:61741297G>A	uc003xue.2	+	14	3931	c.3454G>A	c.(3454-3456)GAA>AAA	p.E1152K		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1152	Helicase ATP-binding.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TCATTTCTTGGAACCAAGTCG	0.433000													14	6					0	0	0.002450	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66963846	66963846	+	Missense_Mutation	SNP	G	A	A	rs141686243		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:66963846G>A	uc003xvs.1	+	3	355	c.64G>A	c.(64-66)GAA>AAA	p.E22K	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	22	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			AGCTCTATACGAAATTCTTGG	0.398000													34	19					0	0	0.002445	0	0
EYA1	2138	broad.mit.edu	37	8	72184058	72184058	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:72184058C>A	uc003xys.3	-	9	1188	c.901G>T	c.(901-903)GGG>TGG	p.G301W	EYA1_uc003xyr.3_Missense_Mutation_p.G296W|EYA1_uc003xyt.3_Missense_Mutation_p.G268W|EYA1_uc010lzf.2_Missense_Mutation_p.G228W|EYA1_uc003xyu.2_Missense_Mutation_p.G301W|EYA1_uc011lfe.1_Missense_Mutation_p.G295W|EYA1_uc003xyv.2_Missense_Mutation_p.G179W	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	301					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CGTGATTTCCCATCTGAACCT	0.468000													47	72					3.54909e-21	5.11948e-21	0.002852	1	0
CA1	759	broad.mit.edu	37	8	86244770	86244770	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:86244770G>A	uc003ydh.2	-	7	662	c.462C>T	c.(460-462)GCC>GCT	p.A154A	CA13_uc003ydf.1_Intron|CA1_uc010mae.1_Silent_p.A154A|CA1_uc003ydi.2_Silent_p.A154A	NM_001738	NP_001729	P00915	CAH1_HUMAN	carbonic anhydrase I	154					one-carbon metabolic process	Golgi apparatus	carbonate dehydratase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(136;4.89e-06)			Acetazolamide(DB00819)|Amlodipine(DB00381)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dichlorphenamide(DB01144)|Ethinamate(DB01031)|Ethoxzolamide(DB00311)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Levetiracetam(DB01202)|Methazolamide(DB00703)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)|Verapamil(DB00661)|Zonisamide(DB00909)	GCTTTGGGTTGGCCTCACCAA	0.318000													23	14					0	0	0.006320	0	0
KCNV1	27012	broad.mit.edu	37	8	110984910	110984910	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:110984910G>A	uc003ynr.3	-	2	910	c.568C>T	c.(568-570)CCC>TCC	p.P190S	KCNV1_uc010mcw.2_Missense_Mutation_p.P190S	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	190	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			CGAACAGTGGGACAAGGTCCT	0.488000													27	36					0	0	0.003954	0	0
FBXL6	26233	broad.mit.edu	37	8	145579875	145579875	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:145579875C>T	uc003zcb.2	-	8	1251	c.1226_splice	c.e8-1	p.E409_splice	C8ORFK29_uc011llb.1_5'Flank|C8ORFK29_uc010mfw.2_5'Flank|C8ORFK29_uc003zby.3_5'Flank|FBXL6_uc003zbz.2_Splice_Site_p.E136_splice|FBXL6_uc003zca.2_Splice_Site_p.E403_splice|FBXL6_uc010mfx.2_Splice_Site_p.E170_splice|GPR172A_uc003zcc.1_5'Flank|GPR172A_uc003zcd.1_5'Flank|GPR172A_uc003zce.1_5'Flank|GPR172A_uc010mfy.1_5'Flank|GPR172A_uc003zcf.1_5'Flank|GPR172A_uc011llc.1_5'Flank	NM_012162	NP_036294	Q8N531	FBXL6_HUMAN	F-box and leucine-rich repeat protein 6 isoform						proteolysis		ubiquitin-protein ligase activity			ovary(1)|lung(1)	2	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			TGCTCCAGCTCTGCAGTGAAA	0.602000													27	18					0	0	0.007291	0	0
ZNF517	340385	broad.mit.edu	37	8	146033000	146033000	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr8:146033000C>T	uc003zed.1	+	5	806	c.699C>T	c.(697-699)TTC>TTT	p.F233F	ZNF517_uc010mgd.1_Silent_p.F139F|ZNF517_uc003zee.1_RNA|ZNF517_uc011llm.1_Silent_p.F139F|ZNF517_uc003zef.1_Intron	NM_213605	NP_998770	Q6ZMY9	ZN517_HUMAN	zinc finger protein 517	233	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;5.47e-39)|OV - Ovarian serous cystadenocarcinoma(54;6.38e-39)|all cancers(56;5.47e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)			AGAAGCCGTTCCAGTGCGGCG	0.682000													7	1					0	0	0.001984	0	0
JAK2	3717	broad.mit.edu	37	9	5123074	5123074	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:5123074C>T	uc010mhm.2	+	22	3243	c.3130C>T	c.(3130-3132)CTG>TTG	p.L1044L	JAK2_uc003ziw.2_Silent_p.L1044L	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	1044	Protein kinase 2.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		TGGAGTGGTTCTGTATGAACT	0.353000		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				21	17					0	0	0.001882	0	0
TOPORS	10210	broad.mit.edu	37	9	32541581	32541581	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:32541581G>A	uc003zrb.2	-	3	3109	c.2942C>T	c.(2941-2943)ACT>ATT	p.T981I	TOPORS_uc003zrc.2_Missense_Mutation_p.T914I	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	981					DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		ATTATCTACAGTTTTGTTGGC	0.393000													32	55					0	0	0.002445	0	0
IL11RA	3590	broad.mit.edu	37	9	34656778	34656778	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:34656778C>T	uc003zvi.2	+	4	1560	c.204C>T	c.(202-204)CTC>CTT	p.L68L	IL11RA_uc011loq.1_Silent_p.L68L|IL11RA_uc003zvj.2_Silent_p.L68L|IL11RA_uc003zvk.2_Silent_p.L68L|IL11RA_uc010mke.2_5'UTR|IL11RA_uc003zvl.2_Intron	NM_004512	NP_004503	Q14626	I11RA_HUMAN	interleukin 11 receptor, alpha isoform 1	68	Ig-like C2-type.|Extracellular (Potential).					integral to plasma membrane	cytokine receptor activity			skin(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.174)	Oprelvekin(DB00038)	CAAAGCTGCTCCAGGGACCTG	0.532000													18	14					0	0	0.008871	0	0
KIAA1539	80256	broad.mit.edu	37	9	35105312	35105312	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:35105312G>A	uc003zwl.2	-	9	1848	c.1523C>T	c.(1522-1524)TCC>TTC	p.S508F	STOML2_uc003zwh.2_5'Flank|STOML2_uc003zwi.2_5'Flank|STOML2_uc003zwj.2_5'Flank|STOML2_uc011lou.1_5'Flank|STOML2_uc003zwk.2_5'Flank|KIAA1539_uc003zwm.2_Missense_Mutation_p.S508F|KIAA1539_uc003zwn.2_Missense_Mutation_p.S203F|KIAA1539_uc003zwo.2_Missense_Mutation_p.S508F	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	508						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GCTCCGGCGGGAAAAAAGCAG	0.557000													14	14					0	0	0.002450	0	0
FRMPD1	22844	broad.mit.edu	37	9	37729760	37729760	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:37729760C>T	uc004aag.1	+	8	692	c.648C>T	c.(646-648)ATC>ATT	p.I216I	FRMPD1_uc004aah.1_Silent_p.I216I|FRMPD1_uc011lqm.1_Silent_p.I38I|FRMPD1_uc011lqn.1_Silent_p.I85I	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	216	FERM.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		AGCTGTCCATCCGAAGTATCG	0.562000													48	29					0	0	0.003610	0	0
TMEM2	23670	broad.mit.edu	37	9	74355074	74355074	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:74355074T>C	uc011lsa.1	-	5	1649	c.1109A>G	c.(1108-1110)AAT>AGT	p.N370S	TMEM2_uc010mos.2_Missense_Mutation_p.N370S|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	370						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		ACTGCTATGATTTTCATAGTT	0.438000													19	22					0	0	0.008871	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88247611	88247611	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:88247611C>T	uc011ltd.1	-	13	2014	c.1981G>A	c.(1981-1983)GAG>AAG	p.E661K	AGTPBP1_uc004aod.3_Missense_Mutation_p.E287K|AGTPBP1_uc011ltc.1_Missense_Mutation_p.E559K|AGTPBP1_uc010mqc.2_Missense_Mutation_p.E621K|AGTPBP1_uc011lte.1_Missense_Mutation_p.E673K	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	661					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						AAAATAGGCTCTTTGAATGGA	0.383000													11	14					0	0	0.001368	0	0
TMEFF1	8577	broad.mit.edu	37	9	103204520	103204520	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:103204520C>T	uc004bay.1	+	1	333	c.300C>T	c.(298-300)CTC>CTT	p.L100L	C9orf30_uc004baw.2_Silent_p.L100L|C9orf30_uc004bax.2_RNA	NM_003692	NP_003683	Q8IYR6	TEFF1_HUMAN	transmembrane protein with EGF-like and two	Error:Variant_position_missing_in_Q8IYR6_after_alignment					multicellular organismal development	integral to membrane|plasma membrane					0		Acute lymphoblastic leukemia(62;0.0452)				TCAGCCCTCTCCTGAGTACCC	0.557000													15	10					0	0	0.004007	0	0
ZNF189	7743	broad.mit.edu	37	9	104170392	104170392	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:104170392C>T	uc004bbh.1	+	3	618	c.342C>T	c.(340-342)TTC>TTT	p.F114F	ZNF189_uc004bbg.1_Silent_p.F72F|ZNF189_uc004bbi.1_Silent_p.F100F|ZNF189_uc011lvk.1_Silent_p.F99F	NM_003452	NP_003443	O75820	ZN189_HUMAN	zinc finger protein 189 isoform 1	114					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|kidney(1)|central_nervous_system(1)	6		Acute lymphoblastic leukemia(62;0.0559)				GAGGGATCTTCCTATGGGAAA	0.378000													8	9					0	0	0.004482	0	0
OR13C9	286362	broad.mit.edu	37	9	107380042	107380042	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:107380042G>A	uc011lvr.1	-	1	444	c.444C>T	c.(442-444)TCC>TCT	p.S148S		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGCAAACCAGGACCCAACAG	0.448000													17	21					0	0	0.007413	0	0
ZNF462	58499	broad.mit.edu	37	9	109687704	109687704	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:109687704C>T	uc004bcz.2	+	3	1800	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F	ZNF462_uc010mto.2_Missense_Mutation_p.S352F|ZNF462_uc004bda.2_Missense_Mutation_p.S352F	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	504					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GCTGTGAATTCCCAGAGTGAA	0.458000													18	19					0	0	0.007413	0	0
KIAA0368	23392	broad.mit.edu	37	9	114173416	114173416	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:114173416C>T	uc004bfe.1	-	23	2755	c.2755G>A	c.(2755-2757)GAG>AAG	p.E919K		NM_001080398	NP_001073867			KIAA0368 protein												0						TGCTGTATCTCCGGGCTCTGA	0.428000													45	109					0	0	0.003610	0	0
CIZ1	25792	broad.mit.edu	37	9	130947959	130947959	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:130947959G>A	uc004btt.2	-	5	618	c.455C>T	c.(454-456)CCC>CTC	p.P152L	CIZ1_uc004btr.2_Missense_Mutation_p.P152L|CIZ1_uc004bts.2_Missense_Mutation_p.P128L|CIZ1_uc011maq.1_Missense_Mutation_p.P152L|CIZ1_uc004btu.2_Missense_Mutation_p.P128L|CIZ1_uc011mar.1_Missense_Mutation_p.P51L|CIZ1_uc011mas.1_Missense_Mutation_p.P182L|CIZ1_uc004btw.2_Missense_Mutation_p.P152L|CIZ1_uc004btv.2_Missense_Mutation_p.P152L|CIZ1_uc004btx.2_Missense_Mutation_p.P128L	NM_001131016	NP_001124488	Q9ULV3	CIZ1_HUMAN	CDKN1A interacting zinc finger protein 1 isoform	152						nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4						AGTGGCCTGGGGAAAGAACTG	0.612000													13	25					0	0	0.001368	0	0
ASS1	445	broad.mit.edu	37	9	133355773	133355773	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:133355773G>A	uc004bzm.2	+	12	1131	c.775G>A	c.(775-777)GGC>AGC	p.G259S	ASS1_uc004bzn.2_Missense_Mutation_p.G259S|ASS1_uc010mza.2_Missense_Mutation_p.G335S|ASS1_uc004bzo.2_Missense_Mutation_p.G240S|ASS1_uc010mzb.2_Missense_Mutation_p.G297S|ASS1_uc004bzp.2_Missense_Mutation_p.G259S|ASS1_uc010mzc.2_Missense_Mutation_p.G259S	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	259					arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	TTCCCACAGGGGCAAGCATGG	0.622000													16	18					0	0	0.004990	0	0
BRD3	8019	broad.mit.edu	37	9	136899829	136899829	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:136899829G>A	uc004cew.2	-	11	2247	c.2059C>T	c.(2059-2061)CGG>TGG	p.R687W		NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	687	Ser-rich.					nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		GTACCTTTCCGGGCGGGCTTC	0.612000			T	NUT|C15orf55	lethal midline carcinoma of young people								17	16					0	0	0.004007	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138719360	138719360	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:138719360G>A	uc004cgr.3	-	8	1116	c.1116C>T	c.(1114-1116)TTC>TTT	p.F372F	CAMSAP1_uc004cgq.3_Silent_p.F262F|CAMSAP1_uc010nbg.2_Silent_p.F94F	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	372						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GGCTGCCTAGGAAACTGCGTT	0.597000													10	17					0	0	0.006214	0	0
SEC16A	9919	broad.mit.edu	37	9	139370859	139370859	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:139370859G>A	uc004chx.2	-	3	1518	c.1209C>T	c.(1207-1209)TTC>TTT	p.F403F	SEC16A_uc004chv.3_Silent_p.F30F|SEC16A_uc004chw.2_Silent_p.F403F|SEC16A_uc010nbn.2_Silent_p.F403F|SEC16A_uc010nbo.1_Silent_p.F403F	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	225					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GGCTGGAGCAGAAATCGTCAA	0.587000													5	15					0	0	0.000602	0	0
PNPLA7	375775	broad.mit.edu	37	9	140392598	140392598	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr9:140392598C>T	uc004cnf.2	-	16	2119	c.1782G>A	c.(1780-1782)TGG>TGA	p.W594*	C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Nonsense_Mutation_p.W619*	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	594	cNMP 3.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		CCACCTCCACCCAGTCCAGGG	0.627000													11	17					0	0	0.001368	0	0
KAL1	3730	broad.mit.edu	37	X	8503632	8503633	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:8503632_8503633GG>AT	uc004csf.2	-	12	1991_1992	c.1841_1842CC>AT	c.(1840-1842)TCC>TAT	p.S614Y		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	614	Fibronectin type-III 4.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						TGGGACCTACGGAAGGCAGGAT	0.500000													10	31					0	0	0.004672	0	0
FRMPD4	9758	broad.mit.edu	37	X	12734281	12734281	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:12734281C>T	uc004cuz.1	+	15	2209	c.1703C>T	c.(1702-1704)GCC>GTC	p.A568V	FRMPD4_uc011mij.1_Missense_Mutation_p.A560V	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	568					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GAACAAGAAGCCCAGATAACA	0.463000													64	77					0	0	0.003610	0	0
RS1	6247	broad.mit.edu	37	X	18662560	18662560	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:18662560C>T	uc004cyo.2	-	5	547	c.512G>A	c.(511-513)GGA>GAA	p.G171E	CDKL5_uc004cym.2_Intron|CDKL5_uc004cyn.2_Intron	NM_000330	NP_000321	O15537	XLRS1_HUMAN	X-linked juvenile retinoschisis protein	171	F5/8 type C.				cell adhesion|multicellular organismal development|response to stimulus|visual perception	extracellular space				ovary(2)	2	Hepatocellular(33;0.183)					CCGGTTGTTTCCAGTCTGGTC	0.567000													38	68					0	0	0.006230	0	0
MED14	9282	broad.mit.edu	37	X	40534569	40534569	+	Silent	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:40534569T>C	uc004dex.3	-	22	3065	c.2925A>G	c.(2923-2925)AGA>AGG	p.R975R		NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	975					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						TTACAGACCTTCTTCGAGCAT	0.383000													26	30					0	0	0.004656	0	0
ARAF	369	broad.mit.edu	37	X	47428156	47428156	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:47428156C>T	uc011mlq.1	+	11	1249	c.1116C>T	c.(1114-1116)TTC>TTT	p.F372F	ARAF_uc011mln.1_RNA|ARAF_uc011mlo.1_Silent_p.F238F|ARAF_uc011mlp.1_Silent_p.F372F|ARAF_uc004dic.1_Silent_p.F153F	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	372	Protein kinase.				intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	TTATGGGCTTCATGACCCGGC	0.562000											OREG0019759	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	17					0	0	0.003163	0	0
IQSEC2	23096	broad.mit.edu	37	X	53285070	53285070	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:53285070G>A	uc004dsd.2	-	3	1112	c.911C>T	c.(910-912)GCC>GTC	p.A304V	IQSEC2_uc004dsc.2_Missense_Mutation_p.A99V	NM_001111125	NP_001104595	Q5JU85	IQEC2_HUMAN	IQ motif and Sec7 domain 2 isoform1	294					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3						CTTCCTCAGGGCGACACTGGC	0.652000													14	18					0	0	0.002450	0	0
ATP7A	538	broad.mit.edu	37	X	77244063	77244063	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:77244063A>G	uc004ecx.3	+	3	606	c.446A>G	c.(445-447)GAT>GGT	p.D149G	ATP7A_uc004ecw.2_Missense_Mutation_p.D149G	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	149	Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						CTCAGTTTAGATACTGGGACA	0.418000													59	156					0	0	0.003610	0	0
BRWD3	254065	broad.mit.edu	37	X	79947403	79947403	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:79947403G>A	uc004edt.2	-	30	3663	c.3400C>T	c.(3400-3402)CAG>TAG	p.Q1134*	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Nonsense_Mutation_p.Q730*|BRWD3_uc004edp.2_Nonsense_Mutation_p.Q963*|BRWD3_uc004edq.2_Nonsense_Mutation_p.Q730*|BRWD3_uc010nmj.1_Nonsense_Mutation_p.Q730*|BRWD3_uc004edr.2_Nonsense_Mutation_p.Q804*|BRWD3_uc004eds.2_Nonsense_Mutation_p.Q730*|BRWD3_uc004edu.2_Nonsense_Mutation_p.Q804*|BRWD3_uc004edv.2_Nonsense_Mutation_p.Q730*|BRWD3_uc004edw.2_Nonsense_Mutation_p.Q730*|BRWD3_uc004edx.2_Nonsense_Mutation_p.Q730*|BRWD3_uc004edy.2_Nonsense_Mutation_p.Q730*|BRWD3_uc004edz.2_Nonsense_Mutation_p.Q804*|BRWD3_uc004eea.2_Nonsense_Mutation_p.Q804*|BRWD3_uc004eeb.2_Nonsense_Mutation_p.Q730*	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1134										ovary(4)	4						TCTCCTTCCTGGGGTTTGTAT	0.443000													28	18					0	0	0.005443	0	0
CYLC1	1538	broad.mit.edu	37	X	83129299	83129299	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:83129299C>T	uc004eei.1	+	4	1604	c.1583C>T	c.(1582-1584)TCC>TTC	p.S528F	CYLC1_uc004eeh.1_Missense_Mutation_p.S527F	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	528	7.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						GATGAATCTTCCAAGACAGGC	0.353000													9	12					0	0	0.004482	0	0
RPA4	29935	broad.mit.edu	37	X	96140065	96140065	+	Silent	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:96140065G>A	uc004efv.3	+	1	1054	c.756G>A	c.(754-756)GTG>GTA	p.V252V	DIAPH2_uc004eft.3_Intron|DIAPH2_uc004efu.3_Intron|DIAPH2_uc004efs.2_Intron	NM_013347	NP_037479	Q13156	RFA4_HUMAN	replication protein A4, 34kDa	252					DNA damage checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair	DNA replication factor A complex|nucleoplasm	single-stranded DNA binding				0						ATCCCACTGTGGATCGGGAGC	0.498000								Other_identified_genes_with_known_or_suspected_DNA_repair_function					47	60					0	0	0.003610	0	0
MCART6	401612	broad.mit.edu	37	X	103349041	103349042	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:103349041_103349042GG>AA	uc004elu.2	-	2	1080_1081	c.899_900CC>TT	c.(898-900)TCC>TTT	p.S300F		NM_001012755	NP_001012773	Q5H9E4	MCAR6_HUMAN	mitochondrial carrier triple repeat 6	300	Solcar 3.				transport	integral to membrane|mitochondrial inner membrane					0						GCTCTTTCCTGGAGTGCGACTT	0.500000													34	39					0	0	0.004672	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280705	105280705	+	Silent	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:105280705C>T	uc004eme.1	-	1	361	c.345G>A	c.(343-345)CTG>CTA	p.L115L	SERPINA7_uc010npd.2_Silent_p.L115L|SERPINA7_uc010npe.1_Silent_p.L115L	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	115					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	GTGAACAGATCAGATGCTGGA	0.478000													59	77					0	0	0.003610	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106069312	106069313	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:106069312_106069313CC>TT	uc004emo.2	+	6	1045_1046	c.880_881CC>TT	c.(880-882)CCC>TTC	p.P294F	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emm.2_Missense_Mutation_p.P294F|TBC1D8B_uc004emn.2_Missense_Mutation_p.P294F	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	294	GRAM 2.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TTTTAGGCTGCCCAAAGGAGAG	0.366000													46	65					0	0	0.004672	0	0
COL4A5	1287	broad.mit.edu	37	X	107866029	107866029	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:107866029G>A	uc004enz.1	+	33	3093	c.2891G>A	c.(2890-2892)GGA>GAA	p.G964E	COL4A5_uc011mso.1_Missense_Mutation_p.G964E|COL4A5_uc004eob.1_Missense_Mutation_p.G572E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	964	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGCTCAAAAGGAGAGAAGGGG	0.428000									Alport_syndrome_with_Diffuse_Leiomyomatosis				55	65					0	0	0.003610	0	0
DOCK11	139818	broad.mit.edu	37	X	117695392	117695392	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:117695392C>T	uc004eqp.2	+	7	668	c.605C>T	c.(604-606)TCA>TTA	p.S202L	DOCK11_uc004eqq.2_5'UTR	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	202	PH.				blood coagulation	cytosol	GTP binding			ovary(3)	3						CCTGACGGTTCATATATTCTC	0.368000													66	58					0	0	0.003610	0	0
THOC2	57187	broad.mit.edu	37	X	122778637	122778637	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:122778637G>A	uc004etu.2	-	14	1584	c.1552C>T	c.(1552-1554)CAG>TAG	p.Q518*	THOC2_uc011muh.1_Nonsense_Mutation_p.Q439*|THOC2_uc011mui.1_Nonsense_Mutation_p.Q403*	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	518					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TACCTATGCTGATATGGAAAT	0.318000													23	34					0	0	0.003954	0	0
XIAP	331	broad.mit.edu	37	X	123022525	123022526	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:123022525_123022526CC>TT	uc010nqu.2	+	3	1060_1061	c.934_935CC>TT	c.(934-936)CCC>TTC	p.P312F	XIAP_uc004etx.2_Missense_Mutation_p.P312F|XIAP_uc010nqv.2_5'UTR	NM_001167	NP_001158	P98170	XIAP_HUMAN	baculoviral IAP repeat-containing protein 4	312	BIR 3.				anti-apoptosis|apoptosis|induction of apoptosis by intracellular signals|response to DNA damage stimulus	cytosol	caspase inhibitor activity|ligase activity|protein binding|zinc ion binding			ovary(1)|lung(1)	2						TGATTGGAAGCCCAGTGAAGAC	0.416000									X-linked_Lymphoproliferative_syndrome				46	72					0	0	0.004672	0	0
BRS3	680	broad.mit.edu	37	X	135570356	135570356	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:135570356C>T	uc004ezv.1	+	1	232	c.83C>T	c.(82-84)TCT>TTT	p.S28F		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	28	Extracellular (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TCTGTGGTTTCTAACGATAAC	0.413000													30	33					0	0	0.002096	0	0
FLNA	2316	broad.mit.edu	37	X	153595894	153595894	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chrX:153595894T>C	uc004fkk.2	-	5	988	c.739A>G	c.(739-741)ATT>GTT	p.I247V	FLNA_uc010nuu.1_Missense_Mutation_p.I247V	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	247	CH 2.|Actin-binding.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGGTCCACAATCTCCTCGGGG	0.612000													27	91					0	0	0.006320	0	0
CADM3	57863	broad.mit.edu	37	1	159166744	159166744	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:159166744delT	uc001ftl.2	+	7	988	c.846delT	c.(844-846)AGTfs	p.S282fs	CADM3_uc009wsy.1_Frame_Shift_Del_p.S236fs|CADM3_uc001ftk.2_Frame_Shift_Del_p.S316fs|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	282	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					CCCAGGAGAGTGCCCTGATCT	0.572													27	261	---	---	---	---					
LGR6	59352	broad.mit.edu	37	1	202269987	202269989	+	In_Frame_Del	DEL	AAC	-	-			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr1:202269987_202269989delAAC	uc001gxu.2	+	8	796_798	c.796_798delAAC	c.(796-798)AACdel	p.N268del	LGR6_uc001gxv.2_In_Frame_Del_p.N216del|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_In_Frame_Del_p.N129del|LGR6_uc009xac.1_RNA	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	268	LRR 8.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GGGGTTCCATAACAACAACATCA	0.493													36	211	---	---	---	---					
MMP12	4321	broad.mit.edu	37	11	102738795	102738796	+	Frame_Shift_Ins	INS	-	T	T	rs68192524		TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr11:102738795_102738796insT	uc001phk.2	-	5	674_675	c.629_630insA	c.(628-630)ACCfs	p.T210fs		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	210					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	AGGAACAAGTGGTGCCTAAGAA	0.416													2	4	---	---	---	---					
IREB2	3658	broad.mit.edu	37	15	78765610	78765610	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr15:78765610delG	uc002bdr.2	+	8	1072	c.910delG	c.(910-912)GTTfs	p.V304fs	IREB2_uc010unb.1_Frame_Shift_Del_p.V54fs|IREB2_uc002bdq.2_Frame_Shift_Del_p.V304fs	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	304							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AACAGAAGCAGTTATGCTTGG	0.378													56	53	---	---	---	---					
CYP2B6	1555	broad.mit.edu	37	19	41510233	41510233	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr19:41510233delG	uc002opr.1	+	3	373	c.366delG	c.(364-366)AAGfs	p.K122fs	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Frame_Shift_Del_p.K82fs	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	122					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	ACCGCTGGAAGGTGCTTCGGC	0.552													11	20	---	---	---	---					
KCNN2	3781	broad.mit.edu	37	5	113698631	113698632	+	In_Frame_Ins	INS	-	GCC	GCC	rs151038013	by1000genomes	TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:113698631_113698632insGCC	uc003kqo.2	+	1	616_617	c.159_160insGCC	c.(157-162)insGCC	p.58_59insA		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	58_59						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		CTGCAGCCGCTGCCGCCGCCGC	0.658													3	6	---	---	---	---					
PCDHB6	56130	broad.mit.edu	37	5	140530730	140530730	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A1IA-06A-11D-A196-08	TCGA-DA-A1IA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2c928fc9-b959-48ce-8d62-fa70289cdc52	99859cf9-be45-48ed-820f-8cef9a36925e	g.chr5:140530730delG	uc003lir.2	+	1	892	c.892delG	c.(892-894)GAAfs	p.E298fs	PCDHB6_uc011dah.1_Frame_Shift_Del_p.E162fs	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	298	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AATCACAGGAGAAATTCGGCT	0.448													34	70	---	---	---	---					
