Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF4	7293	broad.mit.edu	37	1	1147411	1147411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:1147411G>A	uc001ade.2	-	5	550	c.545C>T	c.(544-546)CCC>CTC	p.P182L	TNFRSF4_uc001adf.2_Missense_Mutation_p.P186L	NM_003327	NP_003318	P43489	TNR4_HUMAN	tumor necrosis factor receptor superfamily,	182	Extracellular (Potential).				immune response|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of immunoglobulin secretion|T cell proliferation	integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CCTGGCCGGGGGGCCCTGGGT	0.706													8	20					0	0	0.000442599	0	0
SDF4	51150	broad.mit.edu	37	1	1164101	1164101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:1164101G>A	uc001adh.3	-	2	402	c.73C>T	c.(73-75)CTC>TTC	p.L25F	SDF4_uc001adi.3_Missense_Mutation_p.L25F|SDF4_uc009vjv.2_Intron|SDF4_uc009vjw.2_RNA	NM_016176	NP_057260	Q9BRK5	CAB45_HUMAN	stromal cell derived factor 4 isoform 2	25					cerebellum development|fat cell differentiation|response to ethanol|UV protection|zymogen granule exocytosis	bleb|Golgi lumen|late endosome|soluble fraction	calcium ion binding|calcium ion binding|identical protein binding|protein binding			upper_aerodigestive_tract(1)|large_intestine(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;7.85e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.42e-21)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;4.83e-05)|Kidney(185;0.00252)|BRCA - Breast invasive adenocarcinoma(365;0.00263)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0368)|Lung(427;0.204)		GCCCCCAGGAGCCAGAGGCAG	0.667													5	8					0	0	0.000602214	0	0
ATAD3A	55210	broad.mit.edu	37	1	1463114	1463114	+	Silent	SNP	C	T	T	rs74047254		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:1463114C>T	uc001afz.1	+	14	1615	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F	ATAD3A_uc001aga.1_Silent_p.F459F|ATAD3A_uc001agb.1_Silent_p.F380F	NM_018188	NP_060658	Q9NVI7	ATD3A_HUMAN	ATPase family, AAA domain containing 3A	507							ATP binding|nucleoside-triphosphatase activity|protein binding			skin(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.12e-36)|OV - Ovarian serous cystadenocarcinoma(86;2.18e-22)|Colorectal(212;0.000164)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00233)|BRCA - Breast invasive adenocarcinoma(365;0.00469)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0347)|Lung(427;0.147)		CAGAGCAGTTCGACTGGGCCA	0.597													13	36					0	0	0.00136819	0	0
NADK	65220	broad.mit.edu	37	1	1696783	1696783	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:1696783G>A	uc009vkw.2	-	2	184	c.63C>T	c.(61-63)TAC>TAT	p.Y21Y	NADK_uc001aic.2_Silent_p.Y21Y|NADK_uc001aid.3_Silent_p.Y21Y|NADK_uc001aie.2_Silent_p.Y21Y|NADK_uc009vkx.1_5'UTR	NM_023018	NP_075394	O95544	NADK_HUMAN	NAD kinase	21					ATP metabolic process|NAD metabolic process|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|NAD+ kinase activity|protein binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;8.75e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.33e-23)|GBM - Glioblastoma multiforme(42;1.35e-07)|Colorectal(212;0.000203)|COAD - Colon adenocarcinoma(227;0.000225)|Kidney(185;0.00265)|STAD - Stomach adenocarcinoma(132;0.00655)|BRCA - Breast invasive adenocarcinoma(365;0.00855)|KIRC - Kidney renal clear cell carcinoma(229;0.0382)|Lung(427;0.207)		CCGAGCAGCAGTAAGCAGCCG	0.552													9	41					0	0	0.000274275	0	0
ACTRT2	140625	broad.mit.edu	37	1	2939269	2939269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:2939269C>T	uc001ajz.2	+	1	1224	c.1019C>T	c.(1018-1020)TCC>TTC	p.S340F		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	340						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		CGGTGGTTCTCCACCTGGATT	0.612													17	42					0	0	0.000566183	0	0
KIAA0562	9731	broad.mit.edu	37	1	3755581	3755581	+	Missense_Mutation	SNP	G	A	A	rs139901107		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:3755581G>A	uc001aky.2	-	8	1197	c.838C>T	c.(838-840)CGT>TGT	p.R280C	KIAA0562_uc010nzm.1_RNA|KIAA0562_uc001akz.2_Missense_Mutation_p.R280C	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	280	Potential.					centriole	binding	p.R280C(1)			0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		ACCTCGGCACGATACTGCTCC	0.587													14	64					0	0	0.00316338	0	0
DFFB	1677	broad.mit.edu	37	1	3786176	3786176	+	Missense_Mutation	SNP	C	T	T	rs140809202		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:3786176C>T	uc001alc.2	+	5	841	c.518C>T	c.(517-519)TCC>TTC	p.S173F	DFFB_uc001ale.2_RNA|DFFB_uc009vlp.2_RNA|DFFB_uc001alb.2_RNA|DFFB_uc010nzn.1_Missense_Mutation_p.S197F|DFFB_uc009vlq.2_RNA|DFFB_uc009vlr.2_Missense_Mutation_p.S124F|DFFB_uc001ald.2_Missense_Mutation_p.S109F	NM_004402	NP_004393	O76075	DFFB_HUMAN	DNA fragmentation factor, 40 kD, beta	173					apoptotic chromosome condensation|DNA fragmentation involved in apoptotic nuclear change|intracellular signal transduction	cytosol|nucleoplasm	deoxyribonuclease activity|enzyme binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_cancers(23;2.05e-30)|all_epithelial(116;6.22e-21)|all_lung(118;2.65e-08)|Lung NSC(185;6.25e-06)|Breast(487;0.000659)|Renal(390;0.00121)|all_neural(13;0.0019)|Hepatocellular(190;0.00705)|Colorectal(325;0.0113)|all_hematologic(16;0.0194)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0548)|Medulloblastoma(700;0.211)		Epithelial(90;1.18e-39)|OV - Ovarian serous cystadenocarcinoma(86;7.28e-23)|GBM - Glioblastoma multiforme(42;2.95e-17)|Colorectal(212;1.23e-05)|COAD - Colon adenocarcinoma(227;5.94e-05)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00038)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.124)		CAGGTGAGCTCCTACCCCTCC	0.627													4	11					0	0	0.000602214	0	0
TAS1R1	80835	broad.mit.edu	37	1	6631005	6631005	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:6631005C>T	uc001ant.2	+	2	228	c.228C>T	c.(226-228)TTC>TTT	p.F76F	TAS1R1_uc001anu.2_Silent_p.F76F|TAS1R1_uc001anv.2_Silent_p.F76F|TAS1R1_uc001anw.2_Silent_p.F76F	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	76	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		ACCACCTCTTCCAGGCTATGC	0.542													11	50					0	0	0.00136819	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724488	7724488	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:7724488C>T	uc001aoi.2	+	9	2088	c.1881C>T	c.(1879-1881)GTC>GTT	p.V627V		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	627					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CCCTCCCCGTCGAGCAGAACA	0.647													17	66					0	0	0.00152264	0	0
RERE	473	broad.mit.edu	37	1	8674734	8674734	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:8674734G>A	uc001ape.2	-	5	1218	c.408C>T	c.(406-408)TCC>TCT	p.S136S	RERE_uc001apf.2_Silent_p.S136S|RERE_uc001aph.1_Silent_p.S136S	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	136	BAH.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		AACAGGCCTGGGAGTTGTGGA	0.537													11	41					0	0	0.00185496	0	0
H6PD	9563	broad.mit.edu	37	1	9305248	9305248	+	Silent	SNP	C	T	T	rs138775586	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:9305248C>T	uc001apt.2	+	2	528	c.255C>T	c.(253-255)TCC>TCT	p.S85S		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	85	Glucose 1-dehydrogenase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	AATCCCTCTCCTGCCCCAAGG	0.592													6	15					0	0	0.00307968	0	0
CLSTN1	22883	broad.mit.edu	37	1	9804042	9804042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:9804042G>A	uc001aqh.2	-	9	2015	c.1256C>T	c.(1255-1257)TCC>TTC	p.S419F	CLSTN1_uc001aqi.2_Missense_Mutation_p.S409F|CLSTN1_uc010oag.1_Missense_Mutation_p.S419F	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	419	Extracellular (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		GACATAGAGGGAGTAGTGGTG	0.448													24	63					0	0	0.000720815	0	0
UBE4B	10277	broad.mit.edu	37	1	10166332	10166332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:10166332C>T	uc001aqs.3	+	7	1600	c.887C>T	c.(886-888)CCT>CTT	p.P296L	UBE4B_uc001aqr.3_Intron|UBE4B_uc010oai.1_Intron|UBE4B_uc010oaj.1_Intron	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	296					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		CTTGCCTCACCTTCCCGTGCA	0.597													17	26					0	0	0.00074312	0	0
UBE4B	10277	broad.mit.edu	37	1	10221341	10221341	+	Silent	SNP	C	G	G	rs146965071	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:10221341C>G	uc001aqs.3	+	23	3908	c.3195C>G	c.(3193-3195)CCC>CCG	p.P1065P	UBE4B_uc001aqr.3_Silent_p.P936P|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Silent_p.P520P	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	1065					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding	p.G1065G(1)		ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		ACCAGTTGCCCCGGGTGAGGA	0.542													3	26					0	0	0.00024832	0	0
KIF1B	23095	broad.mit.edu	37	1	10356644	10356644	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:10356644C>T	uc001aqx.3	+	20	1984	c.1782C>T	c.(1780-1782)ATC>ATT	p.I594I	KIF1B_uc001aqv.3_Silent_p.I548I|KIF1B_uc001aqw.3_Silent_p.I548I|KIF1B_uc001aqy.2_Silent_p.I568I|KIF1B_uc001aqz.2_Silent_p.I594I|KIF1B_uc001ara.2_Silent_p.I554I|KIF1B_uc001arb.2_Silent_p.I580I	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	594	FHA.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		TCTTAGTTATCGTGACCTTAG	0.438													8	19					0	0	0.000274275	0	0
PGD	5226	broad.mit.edu	37	1	10460536	10460536	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:10460536C>T	uc001arc.2	+	3	261	c.171C>T	c.(169-171)TCC>TCT	p.S57S	PGD_uc001ard.2_5'UTR|PGD_uc010oak.1_Silent_p.S57S|PGD_uc010oal.1_Silent_p.S44S	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	57					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		GTGCCCAGTCCCTGAAAGAGA	0.502													31	41					0	0	0.00209593	0	0
PGD	5226	broad.mit.edu	37	1	10468171	10468171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:10468171G>A	uc001arc.2	+	6	583	c.493G>A	c.(493-495)GGA>AGA	p.G165R	PGD_uc001ard.2_Nonsense_Mutation_p.W83*|PGD_uc010oak.1_Missense_Mutation_p.G143R|PGD_uc010oal.1_Missense_Mutation_p.G152R	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	165					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		TGCAAAAGTGGGAACTGGAGA	0.498													26	78					0	0	0.001512	0	0
MTOR	2475	broad.mit.edu	37	1	11319449	11319449	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:11319449A>C	uc001asd.2	-	2	139	c.18T>G	c.(16-18)CCT>CCG	p.P6P		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	6					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TGGCGGCGGCAGGTCCGGTTC	0.502													29	144					0	0	0.00178596	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561677	11561677	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:11561677C>T	uc001ash.3	+	2	766	c.628C>T	c.(628-630)CTG>TTG	p.L210L	PTCHD2_uc001asi.1_Silent_p.L210L	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	210	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GACCCCGCCCCTGGAGGATCT	0.687													3	5					0	0	6.4e-05	0	0
PTCHD2	57540	broad.mit.edu	37	1	11585300	11585300	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:11585300C>G	uc001ash.3	+	12	2682	c.2544C>G	c.(2542-2544)TCC>TCG	p.S848S	PTCHD2_uc001asi.1_Silent_p.S848S	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	848	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		ACAGGCTCTCCCTCAATGCCA	0.592													11	50					0	0	0.00136819	0	0
PLOD1	5351	broad.mit.edu	37	1	12008121	12008121	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:12008121C>T	uc001atm.2	+	2	256	c.165C>T	c.(163-165)ATC>ATT	p.I55I	PLOD1_uc010obb.1_Silent_p.I102I	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	55					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	ACTACAAGATCCAGGTAAGGG	0.527													7	55					0	0	0.00307968	0	0
VPS13D	55187	broad.mit.edu	37	1	12328772	12328772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:12328772C>T	uc001atv.2	+	16	1952	c.1811C>T	c.(1810-1812)CCA>CTA	p.P604L	VPS13D_uc001atw.2_Missense_Mutation_p.P604L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	604					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GCTGCAGATCCAGATGGCCCC	0.458													45	172					0	0	0.00361006	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854487	12854487	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:12854487C>T	uc001auj.1	+	3	814	c.711C>T	c.(709-711)CTC>CTT	p.L237L		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	237											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTCGCAAACTCGTTTTCTCCA	0.448													52	212					0	0	0.00361006	0	0
LOC649330	649330	broad.mit.edu	37	1	12907305	12907305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:12907305C>T	uc009vno.2	-	1	933	c.838G>A	c.(838-840)GGA>AGA	p.G280R	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G280R	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	280							nucleic acid binding|nucleotide binding				0						TCATCCTCTCCTTCCTCAGCC	0.483													11	139					0	0	0.00185496	0	0
LOC649330	649330	broad.mit.edu	37	1	12907783	12907783	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:12907783A>T	uc009vno.2	-	1	455	c.360T>A	c.(358-360)TAT>TAA	p.Y120*	HNRNPCL1_uc010obf.1_Nonsense_Mutation_p.Y120*	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	120							nucleic acid binding|nucleotide binding				0						ACATTCCATCATAATAATCCC	0.502													6	18					0	0	0.00116845	0	0
LOC649330	649330	broad.mit.edu	37	1	12907990	12907990	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:12907990G>A	uc009vno.2	-	1	248	c.153C>T	c.(151-153)GGC>GGT	p.G51G	HNRNPCL1_uc010obf.1_Silent_p.G51G	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	51							nucleic acid binding|nucleotide binding				0						CGAAGGCAAAGCCCTTATGAA	0.458													6	52					0	0	0.00116845	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12942972	12942973	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:12942972_12942973CT>TA	uc001aun.2	-	2	314_315	c.243_244AG>TA	c.(241-246)CAAGCT>CATACT	p.81_82QA>HT		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	81_82										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCGAGCACAGCTTGGAAGGCCT	0.629													5	26					0	0	6.4e-05	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12954863	12954863	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:12954863C>T	uc001auo.2	-	3	493	c.420G>A	c.(418-420)AGG>AGA	p.R140R		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	140											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCTCTCCCATCCTTGGACAGT	0.517													22	21					0	0	0.00278032	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001181	13001181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:13001181G>A	uc001auq.2	-	3	588	c.502C>T	c.(502-504)CTT>TTT	p.L168F	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	168											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACCCATAGAAGGAGGCAGGTG	0.468													9	118					0	0	0.000958276	0	0
LOC440563	440563	broad.mit.edu	37	1	13183468	13183468	+	Silent	SNP	G	A	A	rs149064359	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:13183468G>A	uc010obg.1	-	1	500	c.405C>T	c.(403-405)CCC>CCT	p.P135P		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	135						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CCAGAGCAATGGGAGGAGGAG	0.507													7	119					0	0	0.000274275	0	0
SPEN	23013	broad.mit.edu	37	1	16255331	16255331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:16255331G>A	uc001axk.1	+	11	2800	c.2596G>A	c.(2596-2598)GGA>AGA	p.G866R	SPEN_uc010obp.1_Missense_Mutation_p.G825R	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	866					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TGACAAAGAGGGAATAGCGAA	0.463													11	51					0	0	0.000978159	0	0
SPEN	23013	broad.mit.edu	37	1	16262634	16262634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:16262634G>A	uc001axk.1	+	11	10103	c.9899G>A	c.(9898-9900)GGG>GAG	p.G3300E	SPEN_uc010obp.1_Missense_Mutation_p.G3259E	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	3300	Pro-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CACTCCAGCGGGGAGCTGTTT	0.627													10	25					0	0	0.000673444	0	0
NBPF1	55672	broad.mit.edu	37	1	16893825	16893825	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:16893825A>G	uc009vos.1	-	26	3801	c.2913T>C	c.(2911-2913)GAT>GAC	p.D971D	NBPF1_uc009vot.1_Silent_p.D354D|NBPF1_uc001ayz.1_Silent_p.D354D|NBPF1_uc010oce.1_Silent_p.D625D	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	971	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GCCCTTTCTCATCCAGCAGCT	0.488													10	300					0	0	0.00185496	0	0
PADI1	29943	broad.mit.edu	37	1	17548896	17548896	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:17548896G>A	uc001bah.1	+	2	296	c.204G>A	c.(202-204)TGG>TGA	p.W68*		NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	68					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	AGGCCCGTTGGCCGCTAGACA	0.532													26	66					0	0	0.00209593	0	0
PADI3	51702	broad.mit.edu	37	1	17603141	17603141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:17603141C>T	uc001bai.2	+	12	1475	c.1435C>T	c.(1435-1437)CCT>TCT	p.P479S		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	479					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GAGCTTTGTCCCTGCCCCCGA	0.612													9	51					0	0	0.00136819	0	0
ACTL8	81569	broad.mit.edu	37	1	18149712	18149712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:18149712G>A	uc001bat.2	+	2	425	c.209G>A	c.(208-210)GGC>GAC	p.G70D		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	70						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		ATCGAGCGGGGCCGCATCCTC	0.597													11	42					0	0	0.00136819	0	0
IGSF21	84966	broad.mit.edu	37	1	18703912	18703912	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:18703912G>A	uc001bau.1	+	9	1703	c.1320G>A	c.(1318-1320)ACG>ACA	p.T440T	IGSF21_uc001bav.1_Silent_p.T261T	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	440						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CAAGAGGAACGGAGGACTCTA	0.468													16	64					0	0	0.000958276	0	0
PAX7	5081	broad.mit.edu	37	1	19027170	19027170	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:19027170C>T	uc001bay.2	+	6	1408	c.810C>T	c.(808-810)GCC>GCT	p.A270A	PAX7_uc001baz.2_Silent_p.A268A|PAX7_uc010oct.1_Silent_p.A270A	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	270	Homeobox.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		ACCGCCGCGCCCGTTGGCGTA	0.647			T	FOXO1A	alveolar rhabdomyosarcoma								4	31					0	0	0.00198382	0	0
TAS1R2	80834	broad.mit.edu	37	1	19184086	19184086	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:19184086G>A	uc001bba.1	-	2	223	c.222C>T	c.(220-222)GCC>GCT	p.A74A		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	74	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CAAAGCGCATGGCCTGCATGA	0.527													6	36					0	0	0.00307968	0	0
UBR4	23352	broad.mit.edu	37	1	19471391	19471391	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:19471391A>T	uc001bbi.2	-	54	7960	c.7956T>A	c.(7954-7956)CAT>CAA	p.H2652Q	UBR4_uc001bbk.1_Missense_Mutation_p.H334Q	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	2652					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TAGCTTCAATATGAGTTAGTC	0.398													8	45					0	0	0.00307968	0	0
NBPF3	84224	broad.mit.edu	37	1	21798081	21798081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:21798081C>T	uc001ber.2	+	5	816	c.466C>T	c.(466-468)CAC>TAC	p.H156Y	NBPF3_uc001bes.2_Missense_Mutation_p.H100Y|NBPF3_uc009vqb.2_Missense_Mutation_p.H156Y|NBPF3_uc010odm.1_Missense_Mutation_p.H86Y	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	156	Potential.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AGTCCTGGTTCACTCTCAGGA	0.453													18	123					0	0	0.00152264	0	0
ZBTB40	9923	broad.mit.edu	37	1	22852823	22852823	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:22852823C>T	uc001bft.2	+	19	4165	c.3654C>T	c.(3652-3654)CTC>CTT	p.L1218L	ZBTB40_uc001bfu.2_Silent_p.L1218L|ZBTB40_uc009vqi.1_Silent_p.L1106L	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	1218					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		GCTCTGAGCTCGTGGCGGTGA	0.582													14	66					0	0	0.00121646	0	0
EPHA8	2046	broad.mit.edu	37	1	22895813	22895813	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:22895813G>A	uc001bfx.1	+	2	251	c.126G>A	c.(124-126)GGG>GGA	p.G42G	EPHA8_uc001bfw.2_Silent_p.G42G	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	42	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCATCCACGGGGACTGGGGCT	0.587													18	79					0	0	0.00188189	0	0
TMEM57	55219	broad.mit.edu	37	1	25773355	25773355	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:25773355C>T	uc001bkk.2	+	2	385	c.183C>T	c.(181-183)TTC>TTT	p.F61F	TMEM57_uc009vru.2_Silent_p.F61F|TMEM57_uc009vrv.2_Intron|TMEM57_uc009vrt.2_RNA	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	61						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		TCTGGCTTTTCATCAGAAGCG	0.438													17	49					0	0	0.00121646	0	0
MAN1C1	57134	broad.mit.edu	37	1	26104700	26104700	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:26104700C>T	uc001bkm.2	+	9	1692	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F	MAN1C1_uc009vry.1_Silent_p.F274F|MAN1C1_uc001bkn.2_5'Flank	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	454	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		TGGCCTGTTTCTCCGGGGGCA	0.607													13	17					0	0	0.000422831	0	0
MAN1C1	57134	broad.mit.edu	37	1	26107523	26107523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:26107523G>A	uc001bkm.2	+	10	1900	c.1570G>A	c.(1570-1572)GAG>AAG	p.E524K	MAN1C1_uc009vry.1_Missense_Mutation_p.E344K|MAN1C1_uc001bkn.2_5'UTR	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	524	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		CCTCCGGCCAGAGGTGGTGGA	0.622													10	38					0	0	0.00136819	0	0
MAN1C1	57134	broad.mit.edu	37	1	26110160	26110160	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:26110160C>T	uc001bkm.2	+	12	2103	c.1773C>T	c.(1771-1773)CTC>CTT	p.L591L	MAN1C1_uc009vry.1_Silent_p.L411L|MAN1C1_uc001bkn.2_Silent_p.L62L	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	591	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		ACAGGTATCTCTATCTTCTGT	0.582													13	31					0	0	0.00185496	0	0
STMN1	3925	broad.mit.edu	37	1	26227983	26227983	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:26227983T>C	uc001bkz.2	-	4	741	c.377A>G	c.(376-378)AAG>AGG	p.K126R	STMN1_uc010oev.1_Missense_Mutation_p.K126R|STMN1_uc001bla.2_Missense_Mutation_p.K126R|STMN1_uc001blb.2_Missense_Mutation_p.K119R|STMN1_uc001blc.2_Missense_Mutation_p.K126R	NM_203401	NP_981946	P16949	STMN1_HUMAN	stathmin 1 isoform a	126	Potential.				cell differentiation|intracellular signal transduction|microtubule depolymerization|mitotic spindle organization|nervous system development|response to virus	cytoplasm|microtubule	signal transducer activity|tubulin binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000163)|all_lung(284;0.000234)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.013)|READ - Rectum adenocarcinoma(331;0.0649)		GAAACCAACCTTCTCTCGCAA	0.413													18	112					0	0	0.00074312	0	0
PIGV	55650	broad.mit.edu	37	1	27120624	27120625	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:27120624_27120625CC>TT	uc001bmz.2	+	3	430_431	c.99_100CC>TT	c.(97-102)ATCCCA>ATTTCA	p.P34S	PIGV_uc001bmy.2_5'UTR|PIGV_uc009vso.2_Missense_Mutation_p.P34S|PIGV_uc010ofg.1_5'UTR|PIGV_uc001bna.2_Missense_Mutation_p.P34S	NM_017837	NP_060307	Q9NUD9	PIGV_HUMAN	phosphatidylinositol glycan class V	34	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	glycolipid mannosyltransferase activity			ovary(1)	1		all_cancers(24;3.93e-26)|all_epithelial(13;3.96e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.26e-54)|Epithelial(14;2.85e-53)|OV - Ovarian serous cystadenocarcinoma(117;1.91e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000504)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.0222)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.153)|LUSC - Lung squamous cell carcinoma(448;0.227)		ATGCCATCATCCCAGATCACCA	0.381													15	62					0	0	6.4e-05	0	0
PIGV	55650	broad.mit.edu	37	1	27124247	27124247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:27124247C>T	uc001bmz.2	+	4	1725	c.1394C>T	c.(1393-1395)TCT>TTT	p.S465F	PIGV_uc001bmy.2_Missense_Mutation_p.S230F|PIGV_uc009vso.2_Silent_p.F458F|PIGV_uc010ofg.1_Missense_Mutation_p.S230F|PIGV_uc001bna.2_Missense_Mutation_p.S465F	NM_017837	NP_060307	Q9NUD9	PIGV_HUMAN	phosphatidylinositol glycan class V	465	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	glycolipid mannosyltransferase activity			ovary(1)	1		all_cancers(24;3.93e-26)|all_epithelial(13;3.96e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.26e-54)|Epithelial(14;2.85e-53)|OV - Ovarian serous cystadenocarcinoma(117;1.91e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000504)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.0222)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.153)|LUSC - Lung squamous cell carcinoma(448;0.227)		AAAACCTGTTCTCCAGTCACA	0.502													20	51					0	0	0.00188189	0	0
GPR3	2827	broad.mit.edu	37	1	27720522	27720522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:27720522C>T	uc001bod.2	+	2	315	c.220C>T	c.(220-222)CCC>TCC	p.P74S		NM_005281	NP_005272	P46089	GPR3_HUMAN	G protein-coupled receptor 3	74	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane				ovary(1)	1		Breast(348;1.53e-05)|Ovarian(437;0.0606)|all_lung(284;0.157)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;2.81e-26)|Colorectal(126;1.24e-08)|KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;4.45e-06)|Lung(427;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|LUSC - Lung squamous cell carcinoma(448;0.008)|READ - Rectum adenocarcinoma(331;0.0419)		CTTCCGTGCCCCCATGTTCCT	0.642													11	32					0	0	0.00136819	0	0
GMEB1	10691	broad.mit.edu	37	1	29029081	29029081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:29029081G>A	uc001bra.2	+	7	898	c.760G>A	c.(760-762)GAG>AAG	p.E254K	GMEB1_uc001bqz.2_Missense_Mutation_p.E244K|GMEB1_uc001brb.2_Missense_Mutation_p.E244K	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	254					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		GGAAATTTCAGGTATTCTTCT	0.483													11	40					0	0	0.00185496	0	0
LAPTM5	7805	broad.mit.edu	37	1	31208062	31208062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:31208062C>T	uc001bsc.2	-	7	748	c.657G>A	c.(655-657)ATG>ATA	p.M219I		NM_006762	NP_006753	Q13571	LAPM5_HUMAN	lysosomal protein transmembrane 5	219					transport	integral to plasma membrane|lysosomal membrane					0		Colorectal(325;0.0199)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0966)|Medulloblastoma(700;0.151)|Ovarian(437;0.192)		STAD - Stomach adenocarcinoma(196;0.0196)|READ - Rectum adenocarcinoma(331;0.0649)		CCACCGAGTTCATGCACTTGA	0.438													25	102					0	0	0.000720815	0	0
ADC	113451	broad.mit.edu	37	1	33583691	33583691	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:33583691C>T	uc001bwr.2	+	11	1805	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I	ADC_uc001bws.2_Silent_p.I406I|ADC_uc009vue.2_Silent_p.I406I|ADC_uc001bwt.1_Silent_p.I311I|ADC_uc001bwu.2_Silent_p.I311I|ADC_uc001bwv.2_Silent_p.I311I|ADC_uc001bww.2_Silent_p.I311I|ADC_uc001bwx.1_Silent_p.I383I|ADC_uc009vug.2_Silent_p.I426I	NM_052998	NP_443724	Q96A70	ADC_HUMAN	ODC antizyme inhibitor-2	406					polyamine biosynthetic process|spermatogenesis	cytosol	arginine decarboxylase activity			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)			L-Arginine(DB00125)|Pyridoxal Phosphate(DB00114)	CCTGCCACATCACCTATGCCA	0.587													7	22					0	0	0.00198382	0	0
TRIM62	55223	broad.mit.edu	37	1	33623903	33623903	+	Silent	SNP	G	A	A	rs115222802	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:33623903G>A	uc001bxb.2	-	4	1466	c.828C>T	c.(826-828)GGC>GGT	p.G276G		NM_018207	NP_060677	Q9BVG3	TRI62_HUMAN	tripartite motif-containing 62	276						intracellular	zinc ion binding				0		Myeloproliferative disorder(586;0.0393)				ACTGCAGGGGGCCTGTGTACT	0.562													15	63					0	0	0.000566183	0	0
PHC2	1912	broad.mit.edu	37	1	33799694	33799694	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:33799694G>A	uc001bxg.1	-	9	1809	c.1755C>T	c.(1753-1755)TTC>TTT	p.F585F	PHC2_uc001bxh.1_Silent_p.F557F|PHC2_uc009vuh.1_Silent_p.F586F|PHC2_uc001bxe.1_Silent_p.F50F|PHC2_uc001bxf.1_Intron	NM_198040	NP_932157	Q8IXK0	PHC2_HUMAN	polyhomeotic-like 2 isoform a	585	HD1.				multicellular organismal development	PcG protein complex	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				TCCGTACCGGGAAAGGCTCCG	0.408													14	26					0	0	0.000422831	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33944950	33944950	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:33944950C>T	uc001bxj.3	+	2	228	c.61C>T	c.(61-63)CTG>TTG	p.L21L	ZSCAN20_uc001bxk.2_Silent_p.L21L|ZSCAN20_uc009vui.2_Silent_p.L21L	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	21					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				TGAAGAACTCCTGATTGTGAA	0.562													11	21					0	0	0.00136819	0	0
CSMD2	114784	broad.mit.edu	37	1	34015872	34015872	+	Missense_Mutation	SNP	C	T	T	rs149704396	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:34015872C>T	uc001bxn.1	-	55	8419	c.8390G>A	c.(8389-8391)CGG>CAG	p.R2797Q	CSMD2_uc001bxm.1_Missense_Mutation_p.R2941Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2797	Sushi 19.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCAGCTGTACCGCACCACTGC	0.597													4	25					0	0	0.000602214	0	0
CSMD2	114784	broad.mit.edu	37	1	34037281	34037281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:34037281C>T	uc001bxn.1	-	52	7843	c.7814G>A	c.(7813-7815)CGA>CAA	p.R2605Q	CSMD2_uc001bxm.1_Missense_Mutation_p.R2603Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2605	Sushi 16.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AAGCCTCCATCGGCCATGCTC	0.483													6	51					0	0	0.00307968	0	0
CSMD2	114784	broad.mit.edu	37	1	34276422	34276422	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:34276422G>A	uc001bxn.1	-	10	1277	c.1248C>T	c.(1246-1248)ATC>ATT	p.I416I	CSMD2_uc001bxm.1_Silent_p.I456I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	416	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGGGGAGGTGATGATGCCCG	0.542													13	50					0	0	0.00316338	0	0
C1orf94	84970	broad.mit.edu	37	1	34663106	34663106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:34663106G>A	uc001bxs.3	+	2	430	c.31G>A	c.(31-33)GAT>AAT	p.D11N	C1orf94_uc001bxt.2_Missense_Mutation_p.D201N	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	11							protein binding				0		Myeloproliferative disorder(586;0.0393)				GCAGGACTGTGATTCTGCCAC	0.572													6	43					0	0	0.000274275	0	0
GJB5	2709	broad.mit.edu	37	1	35223303	35223303	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:35223303G>A	uc001bxu.2	+	2	472	c.372G>A	c.(370-372)CGG>CGA	p.R124R	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	124	Cytoplasmic (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				GCAAGAAGCGGGGTGGGCTCT	0.572													11	45					0	0	0.000422831	0	0
GJB4	127534	broad.mit.edu	37	1	35227593	35227593	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:35227593G>A	uc001bxv.1	+	2	1108	c.738G>A	c.(736-738)GAG>GAA	p.E246E	GJB4_uc001bxw.3_Silent_p.E246E	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	246	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				GGCACCCTGAGGATGGGAACT	0.617													8	16					0	0	0.00307968	0	0
DLGAP3	58512	broad.mit.edu	37	1	35351752	35351752	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:35351752G>A	uc001byc.2	-	4	1521	c.1521C>T	c.(1519-1521)ATC>ATT	p.I507I		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	507					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				AGCCGGCCTGGATGGCCCGGA	0.692													4	11					0	0	0.000602214	0	0
ZMYM6	9204	broad.mit.edu	37	1	35477565	35477565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:35477565G>A	uc001byh.2	-	8	1216	c.988C>T	c.(988-990)CCT>TCT	p.P330S	ZMYM6_uc001byf.1_Missense_Mutation_p.P330S|ZMYM6_uc010oht.1_Missense_Mutation_p.P233S|ZMYM6_uc009vup.2_Missense_Mutation_p.P136S|ZMYM6_uc009vuq.1_Missense_Mutation_p.P330S|ZMYM6_uc009vur.1_Missense_Mutation_p.P136S	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	330	MYM-type 4.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				TGATACTGAGGGATTGCTGAG	0.378													15	43					0	0	0.000958276	0	0
NCDN	23154	broad.mit.edu	37	1	36028899	36028899	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:36028899C>T	uc001bza.2	+	6	1609	c.1482C>T	c.(1480-1482)TTC>TTT	p.F494F	NCDN_uc001bzb.2_Silent_p.F494F|NCDN_uc001bzc.2_Silent_p.F477F	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	494					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GCAAGTATTTCCTGCAGCAGT	0.622													12	44					0	0	0.00136819	0	0
CLSPN	63967	broad.mit.edu	37	1	36230872	36230872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:36230872G>A	uc001bzi.2	-	2	160	c.80C>T	c.(79-81)CCT>CTT	p.P27L	CLSPN_uc009vux.2_Missense_Mutation_p.P27L	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	27					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ACTATCTGAAGGACTATCTGC	0.408													55	75					0	0	0.00361006	0	0
ZC3H12A	80149	broad.mit.edu	37	1	37941452	37941452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:37941452C>T	uc001cbb.3	+	2	505	c.355C>T	c.(355-357)CCC>TCC	p.P119S		NM_025079	NP_079355	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	119					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCCTAAGGCTCCCAACCTGGA	0.642													6	9					0	0	0.00198382	0	0
GNL2	29889	broad.mit.edu	37	1	38049513	38049513	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:38049513G>A	uc001cbk.2	-	6	754	c.591C>T	c.(589-591)ATC>ATT	p.I197I	GNL2_uc010oif.1_Silent_p.I38I|GNL2_uc009vve.2_3'UTR	NM_013285	NP_037417	Q13823	NOG2_HUMAN	guanine nucleotide binding protein-like 2	197					ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)				CCTTTTTATAGATCTCTTCTT	0.398													17	67					0	0	0.000958276	0	0
RHBDL2	54933	broad.mit.edu	37	1	39381318	39381318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:39381318C>T	uc001ccu.1	-	3	539	c.311G>A	c.(310-312)GGC>GAC	p.G104D	RHBDL2_uc010oin.1_Missense_Mutation_p.G104D|RHBDL2_uc010oio.1_Missense_Mutation_p.G184D|RHBDL2_uc001ccv.2_Missense_Mutation_p.G104D	NM_017821	NP_060291	Q9NX52	RHBL2_HUMAN	rhomboid protease 2	104					proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity				0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			CTCCAAGATGCCTGTGTCCAA	0.473													15	43					0	0	0.00316338	0	0
MACF1	23499	broad.mit.edu	37	1	39790319	39790319	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:39790319T>C	uc010ois.1	+	36	4611	c.4406T>C	c.(4405-4407)GTT>GCT	p.V1469A	MACF1_uc001cda.1_Missense_Mutation_p.V1377A|MACF1_uc001cdc.1_Missense_Mutation_p.V556A|MACF1_uc009vvq.1_Missense_Mutation_p.V526A|MACF1_uc001cdb.1_Missense_Mutation_p.V556A	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3411					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ACCATGTAGGTTCTGTCAGAA	0.308													22	70					0	0	0.00229938	0	0
NT5C1A	84618	broad.mit.edu	37	1	40131798	40131798	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:40131798G>A	uc001cdq.1	-	2	246	c.246C>T	c.(244-246)TAC>TAT	p.Y82Y		NM_032526	NP_115915	Q9BXI3	5NT1A_HUMAN	5'-nucleotidase, cytosolic IA	82					purine base metabolic process|purine nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GTTCCAGCTGGTAGCGCACGT	0.498													9	29					0	0	0.000274275	0	0
ZNF684	127396	broad.mit.edu	37	1	41012346	41012347	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:41012346_41012347CC>TT	uc001cft.1	+	5	602_603	c.351_352CC>TT	c.(349-354)CACCAT>CATTAT	p.H118Y		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			AGAGAATCCACCATTATAATAT	0.327													24	36					0	0	6.4e-05	0	0
EDN2	1907	broad.mit.edu	37	1	41948242	41948242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:41948242C>T	uc001cgx.2	-	3	311	c.239G>A	c.(238-240)GGC>GAC	p.G80D	EDN2_uc001cgu.2_RNA|EDN2_uc001cgv.2_RNA|EDN2_uc009vwh.2_5'UTR|EDN2_uc001cgw.2_RNA|EDN2_uc009vwi.2_Intron|EDN2_uc009vwj.2_Intron	NM_001956	NP_001947	P20800	EDN2_HUMAN	endothelin 2 preproprotein	80					artery smooth muscle contraction|calcium-mediated signaling|cytokine-mediated signaling pathway|elevation of cytosolic calcium ion concentration|hormonal regulation of the force of heart contraction|inositol phosphate-mediated signaling|macrophage activation|macrophage chemotaxis|neutrophil chemotaxis|positive regulation of cell proliferation|positive regulation of heart rate|positive regulation of leukocyte chemotaxis|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of the force of heart contraction by chemical signal|prostaglandin biosynthetic process|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space	endothelin B receptor binding|hormone activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GTTTCCCAGGCCGTAAGGAGC	0.532													20	25					0	0	0.00229938	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047508	42047508	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:42047508C>T	uc001cgz.3	-	4	4174	c.2961G>A	c.(2959-2961)GAG>GAA	p.E987E	HIVEP3_uc001cha.3_Silent_p.E987E|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	987	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				ACCTCCGCATCTCTCGGGCAT	0.597													12	40					0	0	0.00185496	0	0
HIVEP3	59269	broad.mit.edu	37	1	42050193	42050193	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:42050193G>A	uc001cgz.3	-	4	1489	c.276C>T	c.(274-276)ATC>ATT	p.I92I	HIVEP3_uc001cha.3_Silent_p.I92I|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	92					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GAAGCTGTGAGATGTGGACGG	0.597													31	100					0	0	0.000953801	0	0
WDR65	149465	broad.mit.edu	37	1	43675604	43675604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:43675604C>T	uc001cip.1	+	11	2067	c.1946C>T	c.(1945-1947)TCC>TTC	p.S649F	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Intron|WDR65_uc001ciq.1_Missense_Mutation_p.S649F	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	Error:Variant_position_missing_in_Q96MR6_after_alignment										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGGGCCCTCTCCCCAGGAACC	0.527													7	33					0	0	0.000442599	0	0
TMEM125	128218	broad.mit.edu	37	1	43738454	43738454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:43738454G>A	uc001cir.2	+	4	631	c.61G>A	c.(61-63)GAG>AAG	p.E21K	EBNA1BP2_uc001cio.2_5'Flank|TMEM125_uc001cis.2_Missense_Mutation_p.E21K	NM_144626	NP_653227	Q96AQ2	TM125_HUMAN	transmembrane protein 125	21						integral to membrane				breast(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CATGCTGGCAGAGCAGGTGGA	0.711													5	3					0	0	0.00116845	0	0
PTPRF	5792	broad.mit.edu	37	1	44084800	44084800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:44084800C>T	uc001cjr.2	+	27	4913	c.4573C>T	c.(4573-4575)CCC>TCC	p.P1525S	PTPRF_uc001cjs.2_Missense_Mutation_p.P1516S|PTPRF_uc001cju.2_Missense_Mutation_p.P914S|PTPRF_uc009vwt.2_Missense_Mutation_p.P1085S|PTPRF_uc001cjv.2_Missense_Mutation_p.P996S|PTPRF_uc001cjw.2_Missense_Mutation_p.P751S	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1525	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GTACCCAACTCCCATCCTGGC	0.617													4	10					0	0	0.00024832	0	0
IPO13	9670	broad.mit.edu	37	1	44423730	44423730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:44423730C>T	uc001ckx.2	+	8	2417	c.1622C>T	c.(1621-1623)CCT>CTT	p.P541L		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	541	HEAT 9.				protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				CTAGGCAATCCTGAGCTGTCT	0.557													33	52					0	0	0.000953801	0	0
CCDC24	149473	broad.mit.edu	37	1	44461751	44461751	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:44461751G>A	uc001clj.2	+	9	1014	c.843G>A	c.(841-843)TGG>TGA	p.W281*	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|CCDC24_uc001clk.2_Missense_Mutation_p.G235E|CCDC24_uc009vxc.2_Nonsense_Mutation_p.W245*	NM_152499	NP_689712	Q8N4L8	CCD24_HUMAN	coiled-coil domain containing 24	281											0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				CCCACCGCTGGGGACGGCAGC	0.672													9	15					0	0	0.000274275	0	0
SLC6A9	6536	broad.mit.edu	37	1	44466677	44466677	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:44466677G>A	uc001cll.2	-	11	1797	c.1605C>T	c.(1603-1605)TCC>TCT	p.S535S	SLC6A9_uc009vxe.2_Silent_p.S391S|SLC6A9_uc010okm.1_Silent_p.S462S|SLC6A9_uc001clm.2_Silent_p.S481S|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.S466S|SLC6A9_uc001cln.2_Silent_p.S462S|SLC6A9_uc010oko.1_Silent_p.S351S|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	535	Helical; Name=10; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	TGACCACCAAGGAGAAGCTGG	0.652													12	18					0	0	0.00136819	0	0
PTCH2	8643	broad.mit.edu	37	1	45293593	45293593	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:45293593G>A	uc010olf.1	-	14	1992	c.1980C>T	c.(1978-1980)TCC>TCT	p.S660S	PTCH2_uc010olg.1_Silent_p.S358S	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	660	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CACAGGGCAGGGACTTGCAGG	0.612									Basal_Cell_Nevus_syndrome				8	42					0	0	0.000978159	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45486431	45486431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:45486431C>T	uc001cnd.2	-	12	2707	c.2479G>A	c.(2479-2481)GAA>AAA	p.E827K		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	827							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					TGTATTGCTTCCAGAATTGTT	0.438													44	138					0	0	0.00361006	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45516811	45516811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:45516811C>T	uc001cnd.2	-	5	1595	c.1367G>A	c.(1366-1368)GGA>GAA	p.G456E		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	456							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					TCCATAGTTTCCATCCTCCAG	0.517													16	24					0	0	0.000422831	0	0
MUTYH	4595	broad.mit.edu	37	1	45797417	45797417	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:45797417T>C	uc001cnm.2	-	12	1309	c.1093A>G	c.(1093-1095)AGG>GGG	p.R365G	MUTYH_uc009vxn.2_Missense_Mutation_p.R190G|MUTYH_uc001cnf.2_Missense_Mutation_p.R340G|MUTYH_uc009vxo.2_Missense_Mutation_p.R340G|MUTYH_uc001cng.2_Missense_Mutation_p.R351G|MUTYH_uc001cnj.2_Missense_Mutation_p.R248G|MUTYH_uc001cni.2_Missense_Mutation_p.R340G|MUTYH_uc001cnh.2_Missense_Mutation_p.R341G|MUTYH_uc001cno.2_Missense_Mutation_p.R248G|MUTYH_uc001cnk.2_Missense_Mutation_p.R225G|MUTYH_uc010oll.1_Intron|MUTYH_uc001cnl.2_Missense_Mutation_p.R354G|MUTYH_uc009vxp.2_Missense_Mutation_p.R368G|MUTYH_uc001cnn.2_Missense_Mutation_p.R355G	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	365	Nudix hydrolase.				depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					CTCTCCTCCCTGGGGGGCTTG	0.642			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				3	16					0	0	6.4e-05	0	0
FAAH	2166	broad.mit.edu	37	1	46878863	46878863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:46878863G>A	uc001cpu.2	+	14	1664	c.1582G>A	c.(1582-1584)GGG>AGG	p.G528R	FAAH_uc001cpv.2_RNA	NM_001441	NP_001432	O00519	FAAH1_HUMAN	fatty acid amide hydrolase	528	Cytoplasmic (By similarity).				fatty acid catabolic process	cytoplasm|cytoskeleton|endomembrane system|integral to membrane|organelle membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|fatty acid amide hydrolase activity			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)				Propofol(DB00818)|Thiopental(DB00599)	GGGCTACTTTGGGGATATCTG	0.577													4	19					0	0	0.00116845	0	0
CYP4B1	1580	broad.mit.edu	37	1	47276554	47276554	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:47276554C>T	uc001cqm.3	+	2	339	c.255C>T	c.(253-255)TTC>TTT	p.F85F	CYP4B1_uc009vyl.1_5'UTR|CYP4B1_uc001cqn.3_Silent_p.F85F|CYP4B1_uc009vym.2_Silent_p.F85F|CYP4B1_uc010omk.1_Intron|CYP4B1_uc010oml.1_5'Flank	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	85					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CACTCTGGTTCGGACAGTTCA	0.567													5	16					0	0	0.000602214	0	0
CYP4A22	284541	broad.mit.edu	37	1	47614403	47614403	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:47614403C>T	uc001cqv.1	+	12	1545	c.1494C>T	c.(1492-1494)TCC>TCT	p.S498S		NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	498						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						TGTTGAAATCCAAAAATGGAA	0.587													7	41					0	0	0.00307968	0	0
NRD1	4898	broad.mit.edu	37	1	52283802	52283802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:52283802G>A	uc001ctc.3	-	12	1823	c.1501C>T	c.(1501-1503)CCA>TCA	p.P501S	NRD1_uc009vzb.2_Missense_Mutation_p.P196S|NRD1_uc001ctd.3_Missense_Mutation_p.P433S|NRD1_uc001cte.2_Missense_Mutation_p.P369S|NRD1_uc001ctf.2_Missense_Mutation_p.P433S|NRD1_uc010ong.1_RNA|NRD1_uc009vzc.1_Missense_Mutation_p.P301S	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	432					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						TTTCTGATTGGAACAACTAAA	0.323													8	28					0	0	0.00307968	0	0
ORC1L	4998	broad.mit.edu	37	1	52841252	52841252	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:52841252T>C	uc001ctt.2	-	15	2372	c.2153A>G	c.(2152-2154)GAT>GGT	p.D718G	ORC1L_uc010oni.1_Missense_Mutation_p.D713G|ORC1L_uc001ctu.2_Missense_Mutation_p.D718G|ORC1L_uc009vzd.2_Missense_Mutation_p.D472G	NM_004153	NP_004144	Q13415	ORC1_HUMAN	origin recognition complex, subunit 1	718	Necessary and sufficient for ORC complex assembly.				cell cycle checkpoint|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nuclear origin of replication recognition complex|nucleolus|nucleoplasm|plasma membrane	ATP binding|DNA binding|nucleoside-triphosphatase activity|protein binding				0						CCGTCGTGCATCTCCAGACAG	0.542													14	47					0	0	0.00244969	0	0
SLC1A7	6512	broad.mit.edu	37	1	53554641	53554641	+	Missense_Mutation	SNP	G	A	A	rs138141030	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:53554641G>A	uc001cuy.2	-	10	1540	c.1372C>T	c.(1372-1374)CGC>TGC	p.R458C	SLC1A7_uc001cux.2_Missense_Mutation_p.R111C	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	458	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	ATCATGGTGCGGAAACGGTCC	0.612													7	13					0	0	0.00307968	0	0
CPT2	1376	broad.mit.edu	37	1	53679099	53679099	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:53679099C>T	uc001cvb.3	+	5	2324	c.1809C>T	c.(1807-1809)GCC>GCT	p.A603A		NM_000098	NP_000089	P23786	CPT2_HUMAN	carnitine O-palmitoyltransferase precursor	603	Mitochondrial matrix (By similarity).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	mitochondrial inner membrane	carnitine O-palmitoyltransferase activity				0					L-Carnitine(DB00583)|Perhexiline(DB01074)	GGGGCTTTGCCCCTGTGGTCT	0.562													11	45					0	0	0.00244969	0	0
DMRTB1	63948	broad.mit.edu	37	1	53932313	53932313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:53932313C>T	uc001cvq.1	+	4	1062	c.1007C>T	c.(1006-1008)TCG>TTG	p.S336L		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	336					sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						AGCCAGCCATCGTCTCAGGAG	0.557													25	101					0	0	0.001512	0	0
DIO1	1733	broad.mit.edu	37	1	54360102	54360102	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:54360102C>T	uc010onx.1	+	1	242	c.219C>T	c.(217-219)TTC>TTT	p.F73F	DIO1_uc010onw.1_Intron|DIO1_uc009vzl.2_Silent_p.F73F|DIO1_uc001cwb.2_Silent_p.F73F|DIO1_uc010ony.1_Silent_p.F73F|DIO1_uc001cwd.2_Intron|DIO1_uc001cwe.2_Intron|DIO1_uc001cwf.2_RNA|DIO1_uc001cwg.2_RNA	NM_000792	NP_000783	P49895	IOD1_HUMAN	deiodinase, iodothyronine, type I isoform a	73					hormone biosynthetic process|thyroid hormone generation	endoplasmic reticulum membrane|integral to membrane|plasma membrane	selenium binding|thyroxine 5'-deiodinase activity				0						ATTTCTGGTTCGTCTTGAAGG	0.572													10	41					0	0	0.00185496	0	0
LDLRAD1	388633	broad.mit.edu	37	1	54475959	54475959	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:54475959G>A	uc001cwm.1	-	5	483	c.465C>T	c.(463-465)AGC>AGT	p.S155S	LDLRAD1_uc010onz.1_3'UTR|LDLRAD1_uc010ooa.1_Silent_p.S112S|LDLRAD1_uc009vzn.1_RNA	NM_001010978	NP_001010978	Q5T700	LRAD1_HUMAN	low density lipoprotein receptor class A domain	155	LDL-receptor class A 2; atypical.					integral to membrane	receptor activity			skin(2)|large_intestine(1)	3						CCCTACCTGGGCTCAGTTCAT	0.597													13	17					0	0	0.000422831	0	0
C1orf175	374977	broad.mit.edu	37	1	55119556	55119556	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:55119556C>T	uc010ooe.1	+	3	1281	c.957C>T	c.(955-957)TCC>TCT	p.S319S	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Silent_p.S319S|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Silent_p.S319S|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	319	Ser-rich.					integral to membrane	binding				0						AGCCCAACTCCACCATCTCTC	0.557													6	42					0	0	0.000673444	0	0
PARS2	25973	broad.mit.edu	37	1	55223872	55223872	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:55223872G>A	uc001cxy.2	-	2	1046	c.963C>T	c.(961-963)TTC>TTT	p.F321F		NM_152268	NP_689481	Q7L3T8	SYPM_HUMAN	prolyl-tRNA synthetase (mitochondrial)(putative)	321					prolyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|proline-tRNA ligase activity			ovary(2)	2					L-Proline(DB00172)	ACTGGGCATTGAAAATGGATG	0.507													14	48					0	0	0.00316338	0	0
C1orf168	199920	broad.mit.edu	37	1	57257960	57257960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:57257960C>T	uc001cym.3	-	2	932	c.526G>A	c.(526-528)GGG>AGG	p.G176R	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.G176R	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	176										ovary(3)|skin(2)	5						GGAGTAAGCCCCATGCCTTTT	0.488													6	44					0	0	0.00198382	0	0
C8A	731	broad.mit.edu	37	1	57378226	57378226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:57378226G>A	uc001cyo.2	+	10	1663	c.1531G>A	c.(1531-1533)GAG>AAG	p.E511K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	511	EGF-like.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GCCCATCCTCGAGGGCACCAG	0.612													8	41					0	0	0.000274275	0	0
DAB1	1600	broad.mit.edu	37	1	57480650	57480650	+	Silent	SNP	G	A	A	rs148307561		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:57480650G>A	uc001cys.1	-	14	2024	c.1350C>T	c.(1348-1350)GTC>GTT	p.V450V	DAB1_uc001cyt.1_Silent_p.V448V|DAB1_uc001cyq.1_Silent_p.V448V|DAB1_uc001cyr.1_Silent_p.V364V|DAB1_uc009vzw.1_Silent_p.V432V|DAB1_uc009vzx.1_Silent_p.V450V	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	483					cell differentiation|nervous system development			p.V450V(1)		skin(2)|ovary(1)	3						GTGCCACCCCGACTTTGTTGA	0.557													9	21					0	0	0.000978159	0	0
DAB1	1600	broad.mit.edu	37	1	57480958	57480958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:57480958G>A	uc001cys.1	-	14	1716	c.1042C>T	c.(1042-1044)CCT>TCT	p.P348S	DAB1_uc001cyt.1_Missense_Mutation_p.P346S|DAB1_uc001cyq.1_Missense_Mutation_p.P346S|DAB1_uc001cyr.1_Missense_Mutation_p.P262S|DAB1_uc009vzw.1_Missense_Mutation_p.P330S|DAB1_uc009vzx.1_Missense_Mutation_p.P348S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	381					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TGAGTGGCAGGAAAGAGACCC	0.642													13	33					0	0	0.00244969	0	0
OMA1	115209	broad.mit.edu	37	1	59002385	59002385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:59002385G>A	uc001cyy.2	-	3	617	c.529C>T	c.(529-531)CCT>TCT	p.P177S	DAB1_uc001cyt.1_Intron|OMA1_uc001cyx.1_Missense_Mutation_p.P177S|OMA1_uc009vzz.2_Missense_Mutation_p.P177S	NM_145243	NP_660286	Q96E52	OMA1_HUMAN	OMA1 homolog, zinc metallopeptidase precursor	177					proteolysis	integral to membrane|mitochondrial membrane	metal ion binding|metalloendopeptidase activity			large_intestine(1)	1	all_cancers(7;6.54e-05)					TTGTTAGGAGGAAGTGCCTGC	0.353													16	87					0	0	0.000958276	0	0
CYP2J2	1573	broad.mit.edu	37	1	60381647	60381647	+	Silent	SNP	G	A	A	rs138732194	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:60381647G>A	uc001czq.2	-	2	341	c.336C>T	c.(334-336)CCC>CCT	p.P112P		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	112					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					TAGGGGTCACGGGGCGGTTCC	0.423													13	45					0	0	0.000422831	0	0
INADL	10207	broad.mit.edu	37	1	62367033	62367033	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:62367033A>G	uc001dab.2	+	24	3397	c.3283A>G	c.(3283-3285)AAT>GAT	p.N1095D	INADL_uc009waf.1_Missense_Mutation_p.N1095D|INADL_uc001daa.2_Missense_Mutation_p.N1095D|INADL_uc001dad.3_Missense_Mutation_p.N792D|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1095	PDZ 6.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						ACGTCTAAAGAATGGAGAGGA	0.358													15	49					0	0	0.00316338	0	0
UBE2U	148581	broad.mit.edu	37	1	64672524	64672524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:64672524C>T	uc001dbn.1	+	3	470	c.226C>T	c.(226-228)CCG>TCG	p.P76S		NM_152489	NP_689702	Q5VVX9	UBE2U_HUMAN	ubiquitin-conjugating enzyme E2U (putative)	76							ATP binding|protein binding|ubiquitin-protein ligase activity				0						TATAACAATTCCGTTTCATCC	0.289													9	47					0	0	0.000442599	0	0
LEPR	3953	broad.mit.edu	37	1	66067587	66067587	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:66067587G>A	uc001dci.2	+	10	1549	c.1347G>A	c.(1345-1347)TGG>TGA	p.W449*	LEPR_uc001dcg.2_Nonsense_Mutation_p.W449*|LEPR_uc001dch.2_Nonsense_Mutation_p.W449*|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Nonsense_Mutation_p.W449*|LEPR_uc001dck.2_Nonsense_Mutation_p.W449*	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	449	Extracellular (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CTTGCAGATGGTCAACCAGTA	0.328													17	74					0	0	0.00074312	0	0
LEPR	3953	broad.mit.edu	37	1	66075961	66075961	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:66075961T>C	uc001dci.2	+	14	2179	c.1977T>C	c.(1975-1977)AAT>AAC	p.N659N	LEPR_uc001dcg.2_Silent_p.N659N|LEPR_uc001dch.2_Silent_p.N659N|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Silent_p.N659N|LEPR_uc001dck.2_Silent_p.N659N	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	659	Extracellular (Potential).|Fibronectin type-III 3.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		AGGAGAAAAATGTCACTTTAC	0.274													26	76					0	0	0.000878237	0	0
LEPR	3953	broad.mit.edu	37	1	66101927	66101927	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:66101927T>C	uc001dci.2	+	20	2929	c.2727T>C	c.(2725-2727)GGT>GGC	p.G909G	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	909	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGACATGTGGTCCTCTTCTTT	0.348													36	134					0	0	0.00195071	0	0
C1orf141	400757	broad.mit.edu	37	1	67592890	67592890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:67592890G>A	uc001ddl.1	-	2	145	c.34C>T	c.(34-36)CTT>TTT	p.L12F	C1orf141_uc001ddm.1_Missense_Mutation_p.L12F|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	12										ovary(1)	1						TGCTTATCAAGGACATCCAAC	0.313													27	106					0	0	0.00283554	0	0
SERBP1	26135	broad.mit.edu	37	1	67895733	67895733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:67895733G>A	uc001ddv.2	-	1	391	c.251C>T	c.(250-252)CCC>CTC	p.P84L	SERBP1_uc001ddx.2_Missense_Mutation_p.P84L|SERBP1_uc001ddy.2_Missense_Mutation_p.P84L|SERBP1_uc001ddw.2_Missense_Mutation_p.P84L	NM_001018067	NP_001018077	Q8NC51	PAIRB_HUMAN	SERPINE1 mRNA binding protein 1 isoform 1	84					regulation of mRNA stability	nucleus|perinuclear region of cytoplasm	mRNA 3'-UTR binding|protein binding			skin(1)	1						GCCAACGCTGGGGGGCAGCGG	0.627													26	58					0	0	0.001512	0	0
LRRC7	57554	broad.mit.edu	37	1	70505212	70505212	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:70505212G>A	uc001dep.2	+	19	3621	c.3591G>A	c.(3589-3591)AGG>AGA	p.R1197R	LRRC7_uc009wbg.2_Silent_p.R481R|LRRC7_uc001deq.2_Silent_p.R438R	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1197						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						TTACCCAAAGGAGGCCATTGT	0.468													4	20					0	0	0.00024832	0	0
LRRC7	57554	broad.mit.edu	37	1	70555436	70555436	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:70555436T>G	uc001dep.2	+	23	4395	c.4365T>G	c.(4363-4365)CCT>CCG	p.P1455P	LRRC7_uc009wbg.2_Silent_p.P739P|LRRC7_uc001deq.2_Silent_p.P649P	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1455	PDZ.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AAAAGAATCCTGGCCTTGGAT	0.294													10	68					0	0	0.000442599	0	0
C1orf173	127254	broad.mit.edu	37	1	75037852	75037852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:75037852C>T	uc001dgg.2	-	14	3761	c.3542G>A	c.(3541-3543)AGA>AAA	p.R1181K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1181	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTCACTCAGTCTTTCCCCTCC	0.507													11	46					0	0	0.000673444	0	0
C1orf173	127254	broad.mit.edu	37	1	75038907	75038907	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:75038907C>T	uc001dgg.2	-	14	2706	c.2487G>A	c.(2485-2487)AGG>AGA	p.R829R		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	829	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GAGGGATCTCCCTTTTTTCTG	0.572													8	28					0	0	0.000442599	0	0
C1orf173	127254	broad.mit.edu	37	1	75078318	75078318	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:75078318A>G	uc001dgg.2	-	9	1395	c.1176T>C	c.(1174-1176)TCT>TCC	p.S392S	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Silent_p.S186S	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	392										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGTAGCAAGGAGATGATCTCT	0.408													7	44					0	0	0.00307968	0	0
SLC44A5	204962	broad.mit.edu	37	1	75685496	75685496	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:75685496G>A	uc001dgu.2	-	15	1311	c.1167C>T	c.(1165-1167)GTC>GTT	p.V389V	SLC44A5_uc001dgt.2_Silent_p.V389V|SLC44A5_uc001dgs.2_Silent_p.V347V|SLC44A5_uc001dgr.2_Silent_p.V347V|SLC44A5_uc010oqz.1_Silent_p.V428V|SLC44A5_uc010ora.1_Silent_p.V383V|SLC44A5_uc010orb.1_Silent_p.V259V	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	389	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						CTGCTGTCACGACCCAGTAGC	0.403													6	24					0	0	0.00198382	0	0
SLC44A5	204962	broad.mit.edu	37	1	75693468	75693468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:75693468C>T	uc001dgu.2	-	13	1072	c.928G>A	c.(928-930)GGG>AGG	p.G310R	SLC44A5_uc001dgt.2_Missense_Mutation_p.G310R|SLC44A5_uc001dgs.2_Missense_Mutation_p.G268R|SLC44A5_uc001dgr.2_Missense_Mutation_p.G268R|SLC44A5_uc010oqz.1_Missense_Mutation_p.G349R|SLC44A5_uc010ora.1_Missense_Mutation_p.G304R|SLC44A5_uc010orb.1_Missense_Mutation_p.G180R	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	310	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						GTCTGAATCCCGATGTCATAG	0.333													12	13					0	0	0.000978159	0	0
SLC44A5	204962	broad.mit.edu	37	1	75707697	75707697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:75707697G>A	uc001dgu.2	-	9	665	c.521C>T	c.(520-522)CCC>CTC	p.P174L	SLC44A5_uc001dgt.2_Missense_Mutation_p.P174L|SLC44A5_uc001dgs.2_Missense_Mutation_p.P132L|SLC44A5_uc001dgr.2_Missense_Mutation_p.P132L|SLC44A5_uc010oqz.1_Missense_Mutation_p.P213L|SLC44A5_uc010ora.1_Missense_Mutation_p.P168L|SLC44A5_uc010orb.1_Missense_Mutation_p.P44L	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	174	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						AGGTTTGCTGGGAAAAATCGC	0.303													12	45					0	0	0.00185496	0	0
ASB17	127247	broad.mit.edu	37	1	76397819	76397819	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:76397819T>G	uc001dhe.1	-	1	298	c.158A>C	c.(157-159)AAA>ACA	p.K53T	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	53					intracellular signal transduction					ovary(1)	1						CCTCAGAATTTTTGCCAGTGA	0.393													34	98					0	0	0.000814825	0	0
PIGK	10026	broad.mit.edu	37	1	77620211	77620211	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:77620211G>A	uc001dhk.2	-	9	954	c.909C>T	c.(907-909)TTC>TTT	p.F303F	PIGK_uc010orj.1_Silent_p.F227F|PIGK_uc009wbx.2_Silent_p.F209F|PIGK_uc001dhl.1_Silent_p.F303F	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	303	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						CACTTCCAAAGAAATCAGTTA	0.368													11	31					0	0	0.000978159	0	0
ELTD1	64123	broad.mit.edu	37	1	79402088	79402088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:79402088C>T	uc001diq.3	-	7	925	c.769G>A	c.(769-771)GTT>ATT	p.V257I		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	257	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		AAAAAGAAAACTTTGAGAGCT	0.259													13	54					0	0	0.00136819	0	0
LPHN2	23266	broad.mit.edu	37	1	82302695	82302695	+	Missense_Mutation	SNP	G	A	A	rs138982442	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:82302695G>A	uc001dit.3	+	3	207	c.26G>A	c.(25-27)CGA>CAA	p.R9Q	LPHN2_uc001dis.2_Missense_Mutation_p.R9Q|LPHN2_uc001diu.2_Missense_Mutation_p.R9Q|LPHN2_uc001div.2_Missense_Mutation_p.R9Q|LPHN2_uc009wcd.2_Missense_Mutation_p.R9Q	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	9					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TGCAGAATGCGAAGTCTGTGG	0.333													6	37					0	0	0.00307968	0	0
LPHN2	23266	broad.mit.edu	37	1	82372750	82372750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:82372750C>T	uc001dit.3	+	4	303	c.122C>T	c.(121-123)TCC>TTC	p.S41F	LPHN2_uc001dis.2_Missense_Mutation_p.S41F|LPHN2_uc001diu.2_Missense_Mutation_p.S41F|LPHN2_uc001div.2_Missense_Mutation_p.S41F|LPHN2_uc009wcd.2_Missense_Mutation_p.S41F	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	41	Extracellular (Potential).|SUEL-type lectin.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CGAGAATTATCCTGTGAAGGT	0.393													12	31					0	0	0.00136819	0	0
DNASE2B	58511	broad.mit.edu	37	1	84880305	84880305	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:84880305C>T	uc001djt.1	+	6	873	c.840C>T	c.(838-840)TCC>TCT	p.S280S	DNASE2B_uc001dju.1_Silent_p.S72S|DNASE2B_uc009wch.1_Silent_p.S72S	NM_021233	NP_067056	Q8WZ79	DNS2B_HUMAN	deoxyribonuclease II beta isoform 1 precursor	280					DNA metabolic process	lysosome	deoxyribonuclease II activity				0				all cancers(265;0.00303)|Epithelial(280;0.0112)|OV - Ovarian serous cystadenocarcinoma(397;0.0808)		CAAACTGCTCCCTTCCTTACC	0.418								Direct_reversal_of_damage					15	30					0	0	0.000958276	0	0
SSX2IP	117178	broad.mit.edu	37	1	85116084	85116084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:85116084G>A	uc001dkh.2	-	14	1906	c.1631C>T	c.(1630-1632)TCA>TTA	p.S544L	SSX2IP_uc001dkf.2_Missense_Mutation_p.S516L|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Missense_Mutation_p.S517L|SSX2IP_uc001dki.2_Missense_Mutation_p.S544L|SSX2IP_uc010osa.1_Missense_Mutation_p.S517L|SSX2IP_uc001dkj.2_Missense_Mutation_p.S544L|SSX2IP_uc009wci.2_Missense_Mutation_p.S63L	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	544					cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		GCAAAAGTCTGAAGTGGAAGG	0.423													27	102					0	0	0.000878237	0	0
MCOLN2	255231	broad.mit.edu	37	1	85418002	85418002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:85418002G>A	uc001dkm.2	-	6	912	c.671C>T	c.(670-672)TCC>TTC	p.S224F	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	224						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		AAGATGAAAGGAGATTTCAAC	0.353													25	25					0	0	0.000878237	0	0
CYR61	3491	broad.mit.edu	37	1	86048110	86048110	+	Missense_Mutation	SNP	G	A	A	rs149037713		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:86048110G>A	uc001dle.2	+	4	870	c.646G>A	c.(646-648)GAG>AAG	p.E216K	CYR61_uc001dlg.2_Missense_Mutation_p.E45K|CYR61_uc009wcp.1_5'Flank	NM_001554	NP_001545	O00622	CYR61_HUMAN	cysteine-rich, angiogenic inducer, 61 precursor	216					cell proliferation|chemotaxis|positive regulation of BMP signaling pathway|positive regulation of cell migration|positive regulation of osteoblast differentiation|positive regulation of osteoblast proliferation|positive regulation of protein kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell growth|regulation of ERK1 and ERK2 cascade|wound healing, spreading of cells	extracellular region	heparin binding|insulin-like growth factor binding			central_nervous_system(1)	1				all cancers(265;0.0216)|Epithelial(280;0.0441)		TTTTGGAATGGAGCCTCGCAT	0.433											OREG0013583	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	37					0	0	0.000978159	0	0
COL24A1	255631	broad.mit.edu	37	1	86515844	86515844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:86515844G>A	uc001dlj.2	-	11	1910	c.1868C>T	c.(1867-1869)CCT>CTT	p.P623L	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.P623L	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	623					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CGCTTCTCCAGGAGAGCCAAT	0.343													18	64					0	0	0.00152264	0	0
HS2ST1	9653	broad.mit.edu	37	1	87538833	87538833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:87538833C>T	uc010osk.1	+	2	726	c.341C>T	c.(340-342)CCA>CTA	p.P114L	HS2ST1_uc001dmc.3_Missense_Mutation_p.P114L|LOC339524_uc001dme.1_Missense_Mutation_p.P75L	NM_012262	NP_036394	Q7LGA3	HS2ST_HUMAN	heparan sulfate 2-O-sulfotransferase 1 isoform	114	Lumenal (Potential).					Golgi membrane|integral to membrane				central_nervous_system(1)	1		Lung NSC(277;0.153)		all cancers(265;0.00699)|Epithelial(280;0.0261)		AAAAATAATCCAGTGATGTCA	0.368													16	67					0	0	0.000422831	0	0
GBP1	2633	broad.mit.edu	37	1	89524531	89524531	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:89524531C>T	uc001dmx.2	-	5	844	c.624G>A	c.(622-624)CTG>CTA	p.L208L		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	208					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		TACCTTTCTTCAGCTTCAGGG	0.423													9	64					0	0	0.000442599	0	0
GBP2	2634	broad.mit.edu	37	1	89579775	89579775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:89579775C>T	uc001dmz.1	-	7	1344	c.1073G>A	c.(1072-1074)AGT>AAT	p.S358N	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	358					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		CTCTCTCTCACTGTCCCTGTG	0.507													7	53					0	0	0.00307968	0	0
GBP7	388646	broad.mit.edu	37	1	89607325	89607325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:89607325C>T	uc001dna.2	-	9	1511	c.1372G>A	c.(1372-1374)GAG>AAG	p.E458K	GBP2_uc001dmy.1_Intron	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	458						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		TGGAGGACCTCGTCTGCCTGA	0.488													9	22					0	0	0.00136819	0	0
GBP6	163351	broad.mit.edu	37	1	89848427	89848427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:89848427G>A	uc001dnf.2	+	8	1631	c.1357G>A	c.(1357-1359)GGA>AGA	p.G453R	GBP6_uc010ost.1_Missense_Mutation_p.G323R	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	453							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		TCCCAGGAAAGGAGTAAAGGT	0.463													18	26					0	0	0.00188189	0	0
LRRC8B	23507	broad.mit.edu	37	1	90049231	90049231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:90049231C>T	uc001dni.2	+	7	1529	c.1022C>T	c.(1021-1023)TCC>TTC	p.S341F	LRRC8B_uc001dnh.2_Missense_Mutation_p.S341F|LRRC8B_uc001dnj.2_Missense_Mutation_p.S341F	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	341						integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		CTGAGGAGTTCCCTGAAGCAA	0.423													18	58					0	0	0.00152264	0	0
CDC7	8317	broad.mit.edu	37	1	91977433	91977433	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:91977433C>T	uc001doe.2	+	6	690	c.525C>T	c.(523-525)CAC>CAT	p.H175H	CDC7_uc001dof.2_Silent_p.H175H|CDC7_uc010osw.1_Silent_p.H147H|CDC7_uc009wdc.2_Silent_p.H175H|CDC7_uc009wdd.2_5'Flank	NM_003503	NP_003494	O00311	CDC7_HUMAN	cell division cycle 7	175	Protein kinase.				cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	5		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		GTATTGTTCACCGTGATGTTA	0.313													19	30					0	0	0.00152264	0	0
BRDT	676	broad.mit.edu	37	1	92446284	92446284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:92446284G>A	uc001dok.3	+	9	1721	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K	BRDT_uc001dol.3_Missense_Mutation_p.E458K|BRDT_uc010osz.1_Missense_Mutation_p.E462K|BRDT_uc009wdf.2_Missense_Mutation_p.E385K|BRDT_uc010ota.1_Missense_Mutation_p.E412K|BRDT_uc010otb.1_Missense_Mutation_p.E412K|BRDT_uc001dom.3_Missense_Mutation_p.E458K	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	458	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		GTCTAAAAAGGAAAAGAAAAA	0.323													45	123					0	0	0.00285205	0	0
BCAR3	8412	broad.mit.edu	37	1	94054934	94054934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:94054934G>A	uc001dpz.2	-	5	804	c.529C>T	c.(529-531)CGT>TGT	p.R177C	BCAR3_uc001dqa.2_Missense_Mutation_p.R177C|BCAR3_uc001dqb.2_Missense_Mutation_p.R177C|BCAR3_uc001dpy.2_Missense_Mutation_p.R86C|uc009wdn.2_5'Flank	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	177	SH2.				response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		AGAGAGTCACGAACTAGGAAG	0.488													7	16					0	0	0.000274275	0	0
ABCA4	24	broad.mit.edu	37	1	94543444	94543444	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:94543444C>T	uc001dqh.2	-	11	1461	c.1357_splice	c.e11-1	p.D453_splice	ABCA4_uc010otn.1_Splice_Site_p.D453_splice	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4						phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CCAGGGTATCCTTGGGAAGAA	0.418													19	47					0	0	0.00121646	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94640093	94640093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:94640093C>T	uc001dqj.3	-	23	3487	c.3118G>A	c.(3118-3120)GGA>AGA	p.G1040R	ARHGAP29_uc009wdq.1_Intron	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	1040					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity	p.G1040E(1)		breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TTTACATTTCCCATATTTCTG	0.388													23	53					0	0	0.00229938	0	0
RWDD3	25950	broad.mit.edu	37	1	95709865	95709865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:95709865C>T	uc009wdu.2	+	2	260	c.184C>T	c.(184-186)CCT>TCT	p.P62S	RWDD3_uc001drd.3_3'UTR|RWDD3_uc010oty.1_Missense_Mutation_p.P47S|RWDD3_uc009wdt.2_Missense_Mutation_p.P62S|RWDD3_uc001drf.3_Missense_Mutation_p.P62S|RWDD3_uc001drh.3_Missense_Mutation_p.P47S|RWDD3_uc009wdv.2_Intron|RWDD3_uc001drg.3_RNA|RWDD3_uc001dri.3_Missense_Mutation_p.P62S	NM_015485	NP_056300	Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3 isoform a	62	RWD.			YP->AA: Abolishes enhancement of IKBA sumoylation.		cytoplasm|nucleus	protein binding			ovary(1)	1		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		AGTCAATTATCCTTCATGTCT	0.433													14	49					0	0	0.00244969	0	0
RWDD3	25950	broad.mit.edu	37	1	95712135	95712135	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:95712135T>C	uc009wdu.2	+	3	687	c.611T>C	c.(610-612)GTG>GCG	p.V204A	RWDD3_uc001drf.3_Intron|RWDD3_uc001drh.3_Silent_p.C173C|RWDD3_uc009wdv.2_RNA|RWDD3_uc001drg.3_RNA|RWDD3_uc001dri.3_Silent_p.C188C	NM_015485	NP_056300	Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3 isoform a	204						cytoplasm|nucleus	protein binding			ovary(1)	1		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		AAAGTAGATGTGGACTCAAGT	0.318													25	70					0	0	0.00106085	0	0
DPYD	1806	broad.mit.edu	37	1	97700466	97700466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:97700466C>T	uc001drv.2	-	19	2521	c.2384G>A	c.(2383-2385)GGA>GAA	p.G795E		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	795					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity	p.G795R(1)		ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AGAGTCAATTCCACCAGTAGC	0.458													6	25					0	0	0.00116845	0	0
DPYD	1806	broad.mit.edu	37	1	98060651	98060651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:98060651C>T	uc001drv.2	-	9	1059	c.922G>A	c.(922-924)GAC>AAC	p.D308N		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	308					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GGCAAAAAGTCTTTGGATGTA	0.333													25	61					0	0	0.0024448	0	0
PALMD	54873	broad.mit.edu	37	1	100155137	100155137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:100155137C>T	uc001dsg.2	+	7	1764	c.1321C>T	c.(1321-1323)CAT>TAT	p.H441Y	PALMD_uc001dsf.2_Missense_Mutation_p.H441Y	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	441					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		TGGGATCATCCATGCTGAGCT	0.468													8	13					0	0	0.00307968	0	0
AGL	178	broad.mit.edu	37	1	100327133	100327133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:100327133C>T	uc001dsi.1	+	3	557	c.157C>T	c.(157-159)CCT>TCT	p.P53S	AGL_uc001dsj.1_Missense_Mutation_p.P53S|AGL_uc001dsk.1_Missense_Mutation_p.P53S|AGL_uc001dsl.1_Missense_Mutation_p.P53S|AGL_uc001dsm.1_Missense_Mutation_p.P37S|AGL_uc001dsn.1_Missense_Mutation_p.P36S	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	53	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TTACCCATTTCCTGGAGAAAC	0.348													10	36					0	0	0.000442599	0	0
AGL	178	broad.mit.edu	37	1	100366397	100366397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:100366397C>T	uc001dsi.1	+	26	3968	c.3568C>T	c.(3568-3570)CCT>TCT	p.P1190S	AGL_uc001dsj.1_Missense_Mutation_p.P1190S|AGL_uc001dsk.1_Missense_Mutation_p.P1190S|AGL_uc001dsl.1_Missense_Mutation_p.P1190S|AGL_uc001dsm.1_Missense_Mutation_p.P1174S|AGL_uc001dsn.1_Missense_Mutation_p.P1173S	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1190	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TGATTCTGCTCCTTTGCCTGC	0.338													48	59					0	0	0.00361006	0	0
LRRC39	127495	broad.mit.edu	37	1	100621813	100621813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:100621813G>A	uc001dsw.1	-	7	773	c.574C>T	c.(574-576)CCT>TCT	p.P192S	LRRC39_uc001dsx.1_Missense_Mutation_p.P192S|LRRC39_uc001dsy.1_Missense_Mutation_p.P192S|LRRC39_uc001dsz.1_Missense_Mutation_p.P192S	NM_144620	NP_653221	Q96DD0	LRC39_HUMAN	leucine rich repeat containing 39	192	LRR 5.									ovary(2)|skin(1)	3		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0826)|all cancers(265;0.135)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.195)		ACAGCAAGAGGGATTGTAGTA	0.388													19	27					0	0	0.00121646	0	0
VCAM1	7412	broad.mit.edu	37	1	101186281	101186281	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:101186281A>G	uc001dti.2	+	2	434	c.314A>G	c.(313-315)GAA>GGA	p.E105G	VCAM1_uc001dtj.2_Missense_Mutation_p.E105G|VCAM1_uc010ouj.1_Intron	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	105	Ig-like C2-type 1.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	AGGAAATTGGAAAAAGGAATC	0.348													4	16					0	0	0.00024832	0	0
VCAM1	7412	broad.mit.edu	37	1	101194687	101194687	+	Missense_Mutation	SNP	C	T	T	rs3783611	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:101194687C>T	uc001dti.2	+	5	1073	c.953C>T	c.(952-954)TCC>TTC	p.S318F	VCAM1_uc001dtj.2_Intron|VCAM1_uc010ouj.1_Missense_Mutation_p.S256F	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	318	Ig-like C2-type 4.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	GTTGAGATCTCCCCTGGACCC	0.433													33	23					0	0	0.00128727	0	0
OLFM3	118427	broad.mit.edu	37	1	102296230	102296230	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:102296230G>A	uc001duf.2	-	3	501	c.430C>T	c.(430-432)CAG>TAG	p.Q144*	OLFM3_uc001dug.2_Nonsense_Mutation_p.Q124*|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Nonsense_Mutation_p.Q49*|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	144	Potential.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		AAACCTACCTGAAAATGCTTG	0.418													35	86					0	0	0.00321405	0	0
COL11A1	1301	broad.mit.edu	37	1	103488487	103488487	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:103488487C>T	uc001dul.2	-	8	1374	c.1056G>A	c.(1054-1056)AGG>AGA	p.R352R	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Silent_p.R364R|COL11A1_uc001dun.2_Silent_p.R313R|COL11A1_uc009weh.2_Intron	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	352	Nonhelical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CAGAATTTTTCCTCTGGGAAT	0.338													15	40					0	0	0.00316338	0	0
NTNG1	22854	broad.mit.edu	37	1	107691306	107691306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:107691306G>A	uc001dvh.3	+	2	809	c.91G>A	c.(91-93)GAT>AAT	p.D31N	NTNG1_uc001dvf.3_Missense_Mutation_p.D31N|NTNG1_uc010out.1_Missense_Mutation_p.D31N|NTNG1_uc001dvc.3_Missense_Mutation_p.D31N|NTNG1_uc001dvd.1_Missense_Mutation_p.D31N	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	31					axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		GGGACATTATGATTTGTGTAA	0.443													14	57					0	0	0.00244969	0	0
SLC25A24	29957	broad.mit.edu	37	1	108703825	108703825	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:108703825G>A	uc001dvn.3	-	4	703	c.489C>T	c.(487-489)ATC>ATT	p.I163I	SLC25A24_uc001dvm.2_Silent_p.I144I	NM_013386	NP_037518	Q6NUK1	SCMC1_HUMAN	solute carrier family 25 member 24 isoform 1	163	Mitochondrial intermembrane (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)	1		all_epithelial(167;3.72e-05)|all_lung(203;0.000567)|Lung NSC(277;0.0011)|Melanoma(281;0.211)		Colorectal(144;0.0345)|Lung(183;0.0971)|COAD - Colon adenocarcinoma(174;0.127)|Epithelial(280;0.134)		TCCAGAAACGGATAATTTCCT	0.348													10	75					0	0	0.000442599	0	0
CELSR2	1952	broad.mit.edu	37	1	109793362	109793362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:109793362G>A	uc001dxa.3	+	1	722	c.661G>A	c.(661-663)GAT>AAT	p.D221N		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	221	Cadherin 1.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		GTACACCATGGATGCCCTCTT	0.617													35	110					0	0	0.00375469	0	0
CELSR2	1952	broad.mit.edu	37	1	109795165	109795165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:109795165G>A	uc001dxa.3	+	1	2525	c.2464G>A	c.(2464-2466)GGC>AGC	p.G822S		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	822	Extracellular (Potential).|Cadherin 7.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		CTCCTACCAGGGCAGTGTCTA	0.542													38	169					0	0	0.00170553	0	0
SYPL2	284612	broad.mit.edu	37	1	110018237	110018237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:110018237C>T	uc001dxp.2	+	3	530	c.164C>T	c.(163-165)TCC>TTC	p.S55F	SYPL2_uc001dxo.2_Missense_Mutation_p.S55F|SYPL2_uc010ovk.1_Missense_Mutation_p.S55F|SYPL2_uc001dxq.2_5'Flank	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	55	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		TCCTGTGGCTCCTACAGCGGG	0.532													38	169					0	0	0.00222228	0	0
EPS8L3	79574	broad.mit.edu	37	1	110301868	110301868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:110301868C>T	uc001dyr.1	-	5	542	c.397G>A	c.(397-399)GAA>AAA	p.E133K	EPS8L3_uc001dys.1_Missense_Mutation_p.E133K|EPS8L3_uc001dyq.1_Missense_Mutation_p.E133K|EPS8L3_uc009wfm.1_Missense_Mutation_p.E99K|EPS8L3_uc009wfn.1_Missense_Mutation_p.E99K|EPS8L3_uc009wfo.1_Missense_Mutation_p.E80K	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	133						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		ACCCCCACTTCCTGGCACTGG	0.493													27	70					0	0	0.001512	0	0
AHCYL1	10768	broad.mit.edu	37	1	110561083	110561083	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:110561083C>T	uc001dyx.2	+	12	1579	c.1212C>T	c.(1210-1212)ATC>ATT	p.I404I	AHCYL1_uc010ovw.1_Silent_p.I357I|AHCYL1_uc001dyy.2_Silent_p.I357I|AHCYL1_uc010ovx.1_Silent_p.I357I	NM_006621	NP_006612	O43865	SAHH2_HUMAN	S-adenosylhomocysteine hydrolase-like 1	404	NAD binding (By similarity).				one-carbon metabolic process	endoplasmic reticulum	adenosylhomocysteinase activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0259)|Colorectal(144;0.123)|all cancers(265;0.134)|Epithelial(280;0.141)|LUSC - Lung squamous cell carcinoma(189;0.143)		ACACAGAAATCGATGTGGTAA	0.413													7	23					0	0	0.00307968	0	0
KCNA10	3744	broad.mit.edu	37	1	111060332	111060333	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:111060332_111060333CC>TT	uc001dzt.1	-	1	1465_1466	c.1077_1078GG>AA	c.(1075-1080)AAGGGG>AAAAGG	p.G360R		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	360						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		ATCTGCAGCCCCTTGGAGTGGC	0.569													9	37					0	0	6.4e-05	0	0
OVGP1	5016	broad.mit.edu	37	1	111964220	111964220	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:111964220G>A	uc001eba.2	-	7	740	c.684C>T	c.(682-684)CCC>CCT	p.P228P	OVGP1_uc001eaz.2_Silent_p.P190P|OVGP1_uc010owb.1_Intron	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	228					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		GAGAGAAGAGGGGGCTATTAT	0.488													18	37					0	0	0.00121646	0	0
ADORA3	140	broad.mit.edu	37	1	112106515	112106516	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:112106515_112106516CC>TT	uc001ebg.3	-	1	82_83	c.59_60GG>AA	c.(58-60)TGG>TAA	p.W20*	RAP1A_uc001ebi.2_Intron	NM_001081976	NP_001075445	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 3	Error:Variant_position_missing_in_P33765_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	GCTGCTCTTCCCAGGAGCTTTC	0.421													20	71					0	0	6.4e-05	0	0
RAP1A	5906	broad.mit.edu	37	1	112246968	112246968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:112246968C>T	uc001ebi.2	+	6	432	c.328C>T	c.(328-330)CCA>TCA	p.P110S	RAP1A_uc001ebk.2_Missense_Mutation_p.P110S|RAP1A_uc001ebl.2_Missense_Mutation_p.P110S|RAP1A_uc001ebm.2_RNA	NM_002884	NP_002875	P62834	RAP1A_HUMAN	RAP1A, member of RAS oncogene family precursor	110					activation of MAPKK activity|blood coagulation|energy reserve metabolic process|nerve growth factor receptor signaling pathway|regulation of insulin secretion	cytosol|plasma membrane	GTP binding|GTPase activity				0		all_cancers(81;6.79e-06)|all_epithelial(167;2.42e-05)|all_lung(203;0.000105)|Lung NSC(277;0.00021)		Lung(183;0.0183)|Colorectal(144;0.0418)|LUSC - Lung squamous cell carcinoma(189;0.0966)|all cancers(265;0.098)|Epithelial(280;0.0981)|COAD - Colon adenocarcinoma(174;0.141)		CCCACAGGTTCCAATGATTTT	0.378													7	25					0	0	0.00307968	0	0
ST7L	54879	broad.mit.edu	37	1	113140610	113140610	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:113140610A>T	uc001ecd.2	-	5	910	c.605T>A	c.(604-606)TTA>TAA	p.L202*	ST7L_uc009wgh.2_RNA|ST7L_uc001ecc.2_Nonsense_Mutation_p.L19*|ST7L_uc010owg.1_Intron|ST7L_uc010owh.1_Intron|ST7L_uc001ece.2_Nonsense_Mutation_p.L202*|ST7L_uc001ecf.2_Nonsense_Mutation_p.L185*|ST7L_uc001ecg.2_RNA|ST7L_uc010owi.1_Nonsense_Mutation_p.L137*|ST7L_uc001ech.2_Nonsense_Mutation_p.L185*|ST7L_uc001eci.2_Nonsense_Mutation_p.L202*|ST7L_uc009wgi.1_RNA|ST7L_uc010owj.1_Nonsense_Mutation_p.L185*	NM_017744	NP_060214	Q8TDW4	ST7L_HUMAN	suppression of tumorigenicity 7-like isoform 1	202					negative regulation of cell growth	integral to membrane	binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGAAGGACGTAAAAAATCTGT	0.353													55	61					0	0	0.00361006	0	0
MOV10	4343	broad.mit.edu	37	1	113231667	113231668	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:113231667_113231668CC>TT	uc001eck.2	+	3	518_519	c.248_249CC>TT	c.(247-249)GCC>GTT	p.A83V	MOV10_uc001ecl.2_Missense_Mutation_p.A83V|MOV10_uc001ecn.2_Missense_Mutation_p.A83V|MOV10_uc001ecm.2_Missense_Mutation_p.A23V|MOV10_uc009wgj.1_Missense_Mutation_p.A23V	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	83					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		GACCGCTGGGCCGACGTGCGGT	0.53													10	45					0	0	6.4e-05	0	0
SYCP1	6847	broad.mit.edu	37	1	115399263	115399263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:115399263G>A	uc001efr.2	+	3	387	c.178G>A	c.(178-180)GAA>AAA	p.E60K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E60K|SYCP1_uc009wgw.2_Missense_Mutation_p.E60K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	60	Asp/Glu-rich (acidic).				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAAAAATGGGGAAAACATTGA	0.318													40	57					0	0	0.00148497	0	0
TSPAN2	10100	broad.mit.edu	37	1	115615569	115615569	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:115615569C>T	uc001eft.2	-	2	191	c.129G>A	c.(127-129)AAG>AAA	p.K43K		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	43	Extracellular (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		ATGATAACTCCTTTATGGCAC	0.507													11	41					0	0	0.00185496	0	0
IGSF3	3321	broad.mit.edu	37	1	117127336	117127336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:117127336G>A	uc001egr.1	-	9	3484	c.2779C>T	c.(2779-2781)CCC>TCC	p.P927S	IGSF3_uc001egq.1_Missense_Mutation_p.P947S|IGSF3_uc001egs.1_Missense_Mutation_p.P600S	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	927	Ig-like C2-type 7.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		ATGCCACTGGGGCTGGGCAGC	0.632													7	13					0	0	0.00198382	0	0
CD2	914	broad.mit.edu	37	1	117311124	117311124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:117311124G>A	uc001egu.3	+	5	804	c.775G>A	c.(775-777)GAA>AAA	p.E259K		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	259	Cytoplasmic (Potential).				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	AGTAGCTACTGAAGAAAGGGG	0.493													5	17					0	0	0.000602214	0	0
CD2	914	broad.mit.edu	37	1	117311391	117311391	+	Missense_Mutation	SNP	C	T	T	rs41313991	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:117311391C>T	uc001egu.3	+	5	1071	c.1042C>T	c.(1042-1044)CCT>TCT	p.P348S		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	348	Cytoplasmic (Potential).			HGAAENSLSPSSN -> MGQQKTHCPLPLIKKDRNCLFQ (in Ref. 3; AAA51946).	blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	CTCATTGTCCCCTTCCTCTAA	0.488													13	28					0	0	0.00185496	0	0
FAM46C	54855	broad.mit.edu	37	1	118166491	118166491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:118166491C>T	uc001ehe.2	+	2	1200	c.1001C>T	c.(1000-1002)TCC>TTC	p.S334F		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	334											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		AACCTCATCTCCCTCCTGGCC	0.567										Multiple Myeloma(3;1.13e-06)			7	14					0	0	0.000274275	0	0
WDR3	10885	broad.mit.edu	37	1	118481118	118481118	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:118481118G>T	uc010oxe.1	+	5	582	c.516G>T	c.(514-516)ATG>ATT	p.M172I	WDR3_uc001ehi.2_Intron|WDR3_uc001ehh.2_Missense_Mutation_p.M1I	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	172	WD 4.					nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		AAGATACCATGGTGAAATGGT	0.428													7	47					0.000157383	0.000438674	0.00307968	1	0
SPAG17	200162	broad.mit.edu	37	1	118509305	118509305	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:118509305C>T	uc001ehk.2	-	47	6527	c.6459G>A	c.(6457-6459)AAG>AAA	p.K2153K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	2153						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GTGCTGATCCCTTGGCCCCAT	0.408													20	61					0	0	0.00188189	0	0
SPAG17	200162	broad.mit.edu	37	1	118548057	118548057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:118548057G>A	uc001ehk.2	-	32	4824	c.4756C>T	c.(4756-4758)CCT>TCT	p.P1586S		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1586						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TTTCCCTCAGGATCCAGAACC	0.438													21	55					0	0	0.001512	0	0
SPAG17	200162	broad.mit.edu	37	1	118581996	118581996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:118581996C>T	uc001ehk.2	-	23	3306	c.3238G>A	c.(3238-3240)GAA>AAA	p.E1080K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1080						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TTCACAATTTCCTTAGGGTCA	0.383													4	24					0	0	0.00024832	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144859782	144859782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:144859782C>T	uc001elw.3	-	38	6593	c.6302G>A	c.(6301-6303)GGA>GAA	p.G2101E	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.G1995E|PDE4DIP_uc001elv.3_Missense_Mutation_p.G1108E	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2101					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTGCTTGTTTCCAGGGTCAGT	0.572			T	PDGFRB	MPD								6	42					0	0	0.00198382	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144879433	144879433	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:144879433C>T	uc001elw.3	-	27	4308	c.4017G>A	c.(4015-4017)CAG>CAA	p.Q1339Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.Q1295Q|PDE4DIP_uc001elv.3_Silent_p.Q346Q	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1339					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GGAACTCTTCCTGCTTCCCTA	0.537			T	PDGFRB	MPD								15	201					0	0	0.000422831	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144918872	144918872	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:144918872G>A	uc001elw.3	-	10	1605	c.1314C>T	c.(1312-1314)CAC>CAT	p.H438H	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.H504H|PDE4DIP_uc001emc.1_Silent_p.H438H|PDE4DIP_uc001emd.1_Silent_p.H438H|PDE4DIP_uc001emb.1_Silent_p.H601H|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Silent_p.H225H	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	438	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TATGGTTTAGGTGCTGGATGT	0.408			T	PDGFRB	MPD								71	649					0	0	0.00361006	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144994641	144994641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:144994641C>T	uc001elw.3	-	1	382	c.91G>A	c.(91-93)GAG>AAG	p.E31K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Missense_Mutation_p.E31K|PDE4DIP_uc001ell.1_Missense_Mutation_p.E34K|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_Missense_Mutation_p.E97K|PDE4DIP_uc001elo.2_Missense_Mutation_p.E168K|PDE4DIP_uc001elx.3_Missense_Mutation_p.E97K|PDE4DIP_uc001emc.1_Missense_Mutation_p.E31K|PDE4DIP_uc001emd.1_Missense_Mutation_p.E31K|PDE4DIP_uc001emg.1_Missense_Mutation_p.E31K|PDE4DIP_uc001emh.2_Missense_Mutation_p.E168K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	31					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGCATGCGCTCCTCCAGGAAG	0.592			T	PDGFRB	MPD								6	93					0	0	0.00116845	0	0
PDE4DIP	9659	broad.mit.edu	37	1	145015921	145015921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:145015921G>A	uc001elx.3	-	3	502	c.167C>T	c.(166-168)TCC>TTC	p.S56F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_Missense_Mutation_p.S56F|PDE4DIP_uc001elo.2_Missense_Mutation_p.S127F|PDE4DIP_uc001emh.2_Missense_Mutation_p.S127F|uc001emj.2_Intron	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:Variant_position_missing_in_Q5VU43_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGCTCTCAAGGAATATGTCTG	0.448			T	PDGFRB	MPD								18	399					0	0	0.000566183	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561741	145561741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:145561741G>A	uc001eob.1	+	10	1537	c.1429G>A	c.(1429-1431)GGC>AGC	p.G477S	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.G320S	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	477										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TGAACCAGGAGGCACAGTGGC	0.572													13	53					0	0	0.00244969	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562034	145562034	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:145562034C>T	uc001eob.1	+	10	1830	c.1722C>T	c.(1720-1722)GCC>GCT	p.A574A	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.A417A	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	574										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TAAAGGCAGCCCCAGGGAGCA	0.602													7	32					0	0	0.00198382	0	0
PIAS3	10401	broad.mit.edu	37	1	145580513	145580513	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:145580513C>T	uc001eoc.1	+	7	904	c.813C>T	c.(811-813)TCC>TCT	p.S271S	NBPF10_uc001emp.3_Intron|PIAS3_uc010oyy.1_3'UTR|PIAS3_uc001eod.1_5'UTR	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	271	PINIT.				positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGAATTACTCCTTGTCTGTGT	0.512													5	31					0	0	0.00116845	0	0
CHD1L	9557	broad.mit.edu	37	1	146727493	146727493	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:146727493A>G	uc001epm.3	+	4	436	c.373A>G	c.(373-375)ACA>GCA	p.T125A	CHD1L_uc001epn.3_Missense_Mutation_p.T12A|CHD1L_uc010ozo.1_RNA|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Missense_Mutation_p.T125A|CHD1L_uc010ozp.1_Intron|CHD1L_uc001epo.3_Intron	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	125	Helicase ATP-binding.				chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					TTCCTGTGTAACATATGCAGG	0.418													10	26					0	0	0.00244969	0	0
GJA8	2703	broad.mit.edu	37	1	147380093	147380093	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:147380093G>A	uc001epu.1	+	2	74	c.11G>A	c.(10-12)TGG>TAG	p.W4*		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	4	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					ATGGGCGACTGGAGTTTCCTG	0.537													34	42					0	0	0.00170553	0	0
GJA8	2703	broad.mit.edu	37	1	147381187	147381187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:147381187G>A	uc001epu.1	+	2	1168	c.1105G>A	c.(1105-1107)GGG>AGG	p.G369R		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	369	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CGTGCCAGAGGGGGAGAAAGT	0.612													4	5					0	0	0.00024832	0	0
SV2A	9900	broad.mit.edu	37	1	149882138	149882139	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:149882138_149882139GG>AA	uc001etg.2	-	5	1563_1564	c.1072_1073CC>TT	c.(1072-1074)CCC>TTC	p.P358F	SV2A_uc001eth.2_Missense_Mutation_p.P358F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	358	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GAAGAAACGGGGGCTCTCAGGC	0.619													3	6					0	0	6.4e-05	0	0
OTUD7B	56957	broad.mit.edu	37	1	149916304	149916304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:149916304G>A	uc001etn.2	-	12	2340	c.1984C>T	c.(1984-1986)CCT>TCT	p.P662S		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	662					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			TTGGCTGGAGGAGGGCCACCC	0.577													17	42					0	0	0.000566183	0	0
VPS45	11311	broad.mit.edu	37	1	150049782	150049782	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:150049782C>T	uc001etp.2	+	7	1185	c.612C>T	c.(610-612)TTC>TTT	p.F204F	VPS45_uc010pbp.1_RNA|VPS45_uc010pbq.1_Silent_p.F168F|VPS45_uc010pbs.1_Silent_p.F99F|VPS45_uc001etq.2_Silent_p.F24F|VPS45_uc009wlm.1_Silent_p.F180F|VPS45_uc010pbr.1_Silent_p.F168F	NM_007259	NP_009190	Q9NRW7	VPS45_HUMAN	vacuolar protein sorting 45A	204					blood coagulation|intracellular protein transport|vesicle docking involved in exocytosis	endosome membrane|Golgi membrane|integral to membrane of membrane fraction				central_nervous_system(1)|skin(1)	2	Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGTTTGAATTCCGTCGGACAG	0.393													7	43					0	0	0.00307968	0	0
PLEKHO1	51177	broad.mit.edu	37	1	150131292	150131292	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:150131292C>T	uc001ett.2	+	6	1082	c.804C>T	c.(802-804)CGC>CGT	p.R268R	PLEKHO1_uc001etr.2_Silent_p.R96R|PLEKHO1_uc001ets.2_Silent_p.R85R|PLEKHO1_uc001etu.2_Silent_p.R96R	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O	268	Interaction with ATM, CKIP, IFP35 and NMI.					cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGAAAGGCCGCTGCGCCTCCC	0.647													5	15					0	0	0.00198382	0	0
FAM63A	55793	broad.mit.edu	37	1	150971860	150971860	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:150971860G>A	uc001ewf.2	-	8	2650	c.966C>T	c.(964-966)ACC>ACT	p.T322T	FAM63A_uc001ewc.2_Silent_p.T180T|FAM63A_uc010pcm.1_Silent_p.T227T|FAM63A_uc001ewd.2_Silent_p.T180T|FAM63A_uc001ewe.2_Silent_p.T156T|FAM63A_uc010pcn.1_Silent_p.T370T|FAM63A_uc001ewg.2_Silent_p.T322T	NM_018379	NP_001156731	Q8N5J2	FA63A_HUMAN	hypothetical protein LOC55793 isoform 1	322							protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GCTTAGTCATGGTGCTAAAGT	0.498													29	157					0	0	0.00375469	0	0
GABPB2	126626	broad.mit.edu	37	1	151079611	151079611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:151079611G>A	uc001ewr.2	+	7	1166	c.835G>A	c.(835-837)GGA>AGA	p.G279R	GABPB2_uc001ews.2_Missense_Mutation_p.G239R|GABPB2_uc001ewt.2_Missense_Mutation_p.G140R	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	279					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		AGTGACTGATGGAGTCCCTCT	0.458													11	31					0	0	0.00136819	0	0
SEMA6C	10500	broad.mit.edu	37	1	151111940	151111940	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:151111940G>A	uc001ewu.2	-	6	615	c.315C>T	c.(313-315)AGC>AGT	p.S105S	SEMA6C_uc001ewv.2_Silent_p.S105S|SEMA6C_uc001eww.2_Silent_p.S105S|SEMA6C_uc010pcq.1_Silent_p.S105S|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	105	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CCACATCTTGGCTTCTCCATG	0.493													60	71					0	0	0.00361006	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151206687	151206687	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:151206687C>T	uc001exj.2	+	8	1106	c.654C>T	c.(652-654)AAC>AAT	p.N218N	PIP5K1A_uc001exi.2_Silent_p.N205N|PIP5K1A_uc010pcu.1_Silent_p.N206N|PIP5K1A_uc001exk.2_Silent_p.N205N|PIP5K1A_uc010pcv.1_5'UTR	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	218	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCAACCAGAACCCTCGGACTT	0.443													14	93					0	0	0.000566183	0	0
POGZ	23126	broad.mit.edu	37	1	151400396	151400396	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:151400396G>A	uc001eyd.1	-	7	1287	c.981C>T	c.(979-981)ATC>ATT	p.I327I	POGZ_uc001eye.1_Silent_p.I274I|POGZ_uc010pdb.1_Silent_p.I318I|POGZ_uc001eyf.1_Silent_p.I274I|POGZ_uc010pdc.1_Silent_p.I265I|POGZ_uc009wmv.1_Silent_p.I232I|POGZ_uc010pdd.1_Intron|POGZ_uc001eyg.1_Silent_p.I327I	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	327					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CCAGGGAAGGGATGGTGTTAA	0.517													5	42					0	0	0.000602214	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059655	152059655	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152059655A>C	uc001ezo.1	-	3	568	c.503T>G	c.(502-504)TTT>TGT	p.F168C		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	168							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TTCTCCTGGAAAGTTGTGAGT	0.448													14	61					0	0	0.00244969	0	0
RPTN	126638	broad.mit.edu	37	1	152127692	152127692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152127692C>T	uc001ezs.1	-	3	1948	c.1883G>A	c.(1882-1884)GGG>GAG	p.G628E		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	628	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						GTTTTGGTACCCTTCCTGTCC	0.488													15	62					0	0	0.000422831	0	0
HRNR	388697	broad.mit.edu	37	1	152187501	152187501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152187501C>T	uc001ezt.1	-	3	6680	c.6604G>A	c.(6604-6606)GGG>AGG	p.G2202R		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2202	24.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGCCAGACCCATGTTGGCCG	0.622													8	173					0	0	0.00136819	0	0
HRNR	388697	broad.mit.edu	37	1	152187656	152187656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152187656C>T	uc001ezt.1	-	3	6525	c.6449G>A	c.(6448-6450)GGA>GAA	p.G2150E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2150					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGCTAGATCCGTGTCGTTC	0.582													29	622					0	0	0.00148497	0	0
HRNR	388697	broad.mit.edu	37	1	152193546	152193546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152193546G>A	uc001ezt.1	-	3	635	c.559C>T	c.(559-561)CAT>TAT	p.H187Y		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	187	1.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAAGACTGATGGGAGTCGGAG	0.527													6	42					0	0	0.00198382	0	0
FLG	2312	broad.mit.edu	37	1	152281216	152281216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152281216C>T	uc001ezu.1	-	3	6182	c.6146G>A	c.(6145-6147)GGA>GAA	p.G2049E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2049	Ser-rich.|Filaggrin 12.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCTGAATGTCCCTCACTGTC	0.562									Ichthyosis				40	224					0	0	0.00128727	0	0
FLG	2312	broad.mit.edu	37	1	152283490	152283490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152283490G>A	uc001ezu.1	-	3	3908	c.3872C>T	c.(3871-3873)TCC>TTC	p.S1291F	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1291	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			atggtttctggaagCAGACCC	0.398									Ichthyosis				25	62					0	0	0.00332997	0	0
FLG	2312	broad.mit.edu	37	1	152283639	152283639	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152283639G>A	uc001ezu.1	-	3	3759	c.3723C>T	c.(3721-3723)GCC>GCT	p.A1241A	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1241	Ser-rich.|Filaggrin 7.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGCCCAAGAGGCAGCTTCAT	0.557									Ichthyosis				61	102					0	0	0.00361006	0	0
FLG	2312	broad.mit.edu	37	1	152285532	152285533	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152285532_152285533CC>TT	uc001ezu.1	-	3	1865_1866	c.1829_1830GG>AA	c.(1828-1830)GGG>GAA	p.G610E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	610	Filaggrin 3.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTCCTGGGCCCCGATGATTG	0.569									Ichthyosis				21	121					0	0	6.4e-05	0	0
FLG2	388698	broad.mit.edu	37	1	152324098	152324098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152324098C>T	uc001ezw.3	-	3	6237	c.6164G>A	c.(6163-6165)GGA>GAA	p.G2055E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2055							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGTTGAGATCCGGCTTGGCC	0.522													32	136					0	0	0.00327116	0	0
FLG2	388698	broad.mit.edu	37	1	152325161	152325161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152325161C>T	uc001ezw.3	-	3	5174	c.5101G>A	c.(5101-5103)GAT>AAT	p.D1701N	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1701							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTAGTGGTATCTCCTGTCTGT	0.488													15	81					0	0	0.00316338	0	0
FLG2	388698	broad.mit.edu	37	1	152326459	152326459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152326459C>T	uc001ezw.3	-	3	3876	c.3803G>A	c.(3802-3804)CGA>CAA	p.R1268Q	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1268	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTAGATCTTCGTCTTCTAGT	0.458													34	89					0	0	0.00375469	0	0
CRNN	49860	broad.mit.edu	37	1	152382913	152382913	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152382913C>T	uc001ezx.2	-	3	719	c.645G>A	c.(643-645)AGG>AGA	p.R215R		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	215	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCCTGTTCCCTGGTCTGTG	0.572													20	127					0	0	0.00188189	0	0
LCE3B	353143	broad.mit.edu	37	1	152586388	152586388	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152586388C>T	uc010pds.1	+	1	102	c.102C>T	c.(100-102)TCC>TCT	p.S34S		NM_178433	NP_848520	Q5TA77	LCE3B_HUMAN	late cornified envelope 3B	34	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0313)|Kidney(5;0.0367)		CTCCAGCCTCCTCCTGCTGTG	0.667													9	32					0	0	0.000442599	0	0
LCE1E	353135	broad.mit.edu	37	1	152759970	152759970	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:152759970G>A	uc001fan.2	+	2	248	c.195G>A	c.(193-195)GGG>GGA	p.G65G		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	65	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCAGCTCTGGGGGCTGCTGCA	0.667													7	46					0	0	0.00307968	0	0
SPRR2E	6704	broad.mit.edu	37	1	153066064	153066064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:153066064G>A	uc001fbh.2	-	2	225	c.164C>T	c.(163-165)CCT>CTT	p.P55L	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_Intron|SPRR2A_uc009woa.2_Intron	NM_001024209	NP_001019380	P22531	SPR2E_HUMAN	small proline-rich protein 2E	55					keratinization	cornified envelope|cytoplasm	protein binding|structural molecule activity			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGTCACAGGAGGACATTTTTG	0.557													66	118					0	0	0.00361006	0	0
SPRR2F	6705	broad.mit.edu	37	1	153085054	153085054	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:153085054C>T	uc001fbi.2	-	2	215	c.156G>A	c.(154-156)CAG>CAA	p.Q52Q	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_Intron|SPRR2A_uc009woa.2_Intron	NM_001014450	NP_001014450	Q96RM1	SPR2F_HUMAN	small proline-rich protein 2F	52					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAGGACATTTCTGCTGGCACT	0.582													20	139					0	0	0.00332997	0	0
SPRR2G	6706	broad.mit.edu	37	1	153122501	153122501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:153122501G>A	uc009wod.1	-	2	207	c.86C>T	c.(85-87)CCC>CTC	p.P29L		NM_001014291	NP_001014313	Q9BYE4	SPR2G_HUMAN	small proline-rich protein 2G	29	1.|3 X 9 AA approximate tandem repeats.				keratinization	cornified envelope|cytoplasm					0	all_lung(78;1.78e-30)|Lung NSC(65;7.29e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCACTTCGGGGGTGGACATGG	0.602													16	44					0	0	0.000958276	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153279643	153279643	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:153279643G>A	uc001fbn.1	-	2	209	c.156C>T	c.(154-156)CTC>CTT	p.L52L		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	52					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCATCCCTGGGAGCTGGTCTG	0.632													5	4					0	0	0.000602214	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153318593	153318594	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:153318593_153318594GG>TT	uc001fbo.2	-	3	188_189	c.123_124CC>AA	c.(121-126)TCCCAG>TCAAAG	p.Q42K	PGLYRP4_uc001fbp.2_Missense_Mutation_p.Q42K	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	42					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCAGTGAGCTGGGAGATGTTCT	0.455													8	171					0	0	6.4e-05	0	0
GATAD2B	57459	broad.mit.edu	37	1	153791327	153791328	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:153791327_153791328TC>GT	uc001fdb.3	-	4	780_781	c.536_537GA>AC	c.(535-537)CGA>CAC	p.R179H		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	179	CR1.|Potential.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			ACAGGACCAGTCGGGCTTCTTC	0.475													26	68					0	0	6.4e-05	0	0
NUP210L	91181	broad.mit.edu	37	1	154029408	154029408	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:154029408C>T	uc001fdw.2	-	23	3195	c.3123G>A	c.(3121-3123)CAG>CAA	p.Q1041Q	NUP210L_uc009woq.2_Intron|NUP210L_uc010peh.1_Silent_p.Q1041Q	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1041						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AGTATTCGTCCTGTTGCTCCA	0.303													6	62					0	0	0.00198382	0	0
UBAP2L	9898	broad.mit.edu	37	1	154218811	154218811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:154218811C>T	uc001fep.3	+	11	1141	c.974C>T	c.(973-975)TCA>TTA	p.S325L	UBAP2L_uc009wot.2_Missense_Mutation_p.S325L|UBAP2L_uc010pek.1_Missense_Mutation_p.S317L|UBAP2L_uc010pel.1_Missense_Mutation_p.S335L|UBAP2L_uc010pen.1_Missense_Mutation_p.S239L	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	325					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			ACTGCCATATCACAGCCTGCT	0.458													13	112					0	0	0.00316338	0	0
ATP8B2	57198	broad.mit.edu	37	1	154309862	154309862	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:154309862C>T	uc001fey.1	+	11	1122	c.933C>T	c.(931-933)GCC>GCT	p.A311A	ATP8B2_uc001few.2_Silent_p.A292A|ATP8B2_uc001fex.2_Silent_p.A325A	NM_001005855	NP_001005855	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform b	311	Helical; (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			TGATCCTGGCCATTGGCAATG	0.557													18	74					0	0	0.00229938	0	0
ADAR	103	broad.mit.edu	37	1	154574585	154574585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:154574585G>A	uc001ffh.2	-	2	733	c.533C>T	c.(532-534)TCC>TTC	p.S178F	ADAR_uc001ffj.2_Missense_Mutation_p.S178F|ADAR_uc001ffi.2_Missense_Mutation_p.S178F|ADAR_uc001ffk.2_5'UTR|ADAR_uc001ffl.1_5'UTR	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	178	|DRADA 1.				adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		CTTTGCCAGGGAGTATAAAAC	0.517													25	98					0	0	0.00209593	0	0
PYGO2	90780	broad.mit.edu	37	1	154932029	154932029	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:154932029G>A	uc001fft.2	-	3	653	c.447C>T	c.(445-447)CCC>CCT	p.P149P		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	149	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CAGGACCCTGGGGGGGCATGT	0.622													8	42					0	0	0.000442599	0	0
PYGO2	90780	broad.mit.edu	37	1	154932050	154932050	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:154932050G>A	uc001fft.2	-	3	632	c.426C>T	c.(424-426)GGC>GGT	p.G142G		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	142	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGAAAGCAGGGCCCATAGGAT	0.637													5	34					0	0	0.00116845	0	0
TRIM46	80128	broad.mit.edu	37	1	155156586	155156586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:155156586G>A	uc001fhs.1	+	10	2283	c.2200G>A	c.(2200-2202)GGC>AGC	p.G734S	RAG1AP1_uc010pey.1_Intron|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Missense_Mutation_p.G608S|TRIM46_uc001fhu.1_Missense_Mutation_p.G711S|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	734	B30.2/SPRY.					intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CATCGGGGGTGGCGCAGTACA	0.622													9	16					0	0	0.000442599	0	0
PKLR	5313	broad.mit.edu	37	1	155265068	155265068	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:155265068A>C	uc001fkb.3	-	5	572	c.533T>G	c.(532-534)GTG>GGG	p.V178G	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Missense_Mutation_p.V147G	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	178					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	GGAGCCCTTCACCAGCTCCAC	0.672													11	56					0	0	0.00185496	0	0
GON4L	54856	broad.mit.edu	37	1	155723012	155723012	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:155723012C>G	uc001flz.2	-	29	5922	c.5825G>C	c.(5824-5826)GGA>GCA	p.G1942A	GON4L_uc001flx.1_5'Flank|GON4L_uc009wrg.1_Intron|GON4L_uc001fly.1_Missense_Mutation_p.G1942A|GON4L_uc009wrh.1_Missense_Mutation_p.G1942A|GON4L_uc001fma.1_Missense_Mutation_p.G1942A	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1942					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					AGGCATCTCTCCCTTTCTGGT	0.562													5	28					0	0	0.00116845	0	0
GON4L	54856	broad.mit.edu	37	1	155823120	155823120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:155823120G>A	uc001flz.2	-	2	549	c.452C>T	c.(451-453)ACC>ATC	p.T151I	GON4L_uc001fly.1_Missense_Mutation_p.T151I|GON4L_uc009wrh.1_Missense_Mutation_p.T151I|GON4L_uc001fma.1_Missense_Mutation_p.T151I|GON4L_uc001fmc.2_Missense_Mutation_p.T151I|GON4L_uc001fmd.3_Missense_Mutation_p.T151I|GON4L_uc009wri.2_5'UTR	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	151					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CTCCTTTAGGGTAAGATGATC	0.438													31	122					0	0	0.00283554	0	0
KIAA0907	22889	broad.mit.edu	37	1	155896943	155896943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:155896943G>A	uc001fmi.1	-	5	493	c.469C>T	c.(469-471)CGT>TGT	p.R157C	KIAA0907_uc001fmj.1_Missense_Mutation_p.R157C|KIAA0907_uc009wrk.1_Intron|KIAA0907_uc009wrl.1_RNA|KIAA0907_uc001fml.1_Missense_Mutation_p.R157C|KIAA0907_uc001fmm.2_Missense_Mutation_p.R157C|SCARNA4_uc001fmn.1_5'Flank|KIAA0907_uc001fmo.2_Missense_Mutation_p.R157C	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	157											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TATAATGGACGATCCCTATAA	0.378													12	57					0	0	0.000566183	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155935153	155935153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:155935153G>A	uc001fmt.2	-	6	639	c.521C>T	c.(520-522)TCC>TTC	p.S174F	ARHGEF2_uc001fmr.2_Missense_Mutation_p.S147F|ARHGEF2_uc001fms.2_Missense_Mutation_p.S174F|ARHGEF2_uc001fmu.2_Missense_Mutation_p.S219F|ARHGEF2_uc010pgt.1_Missense_Mutation_p.S147F|ARHGEF2_uc010pgu.1_Missense_Mutation_p.S219F	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	174					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGAGTCTGTGGACTGTGAGAG	0.577													14	40					0	0	0.00074312	0	0
NES	10763	broad.mit.edu	37	1	156640236	156640236	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:156640236C>T	uc001fpq.2	-	4	3877	c.3744G>A	c.(3742-3744)GGG>GGA	p.G1248G		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1248	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCCCCTGCACCCCCCAGCTAG	0.662													18	50					0	0	0.00278032	0	0
SH2D2A	9047	broad.mit.edu	37	1	156779576	156779576	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:156779576G>A	uc001fqd.2	-	6	731	c.591C>T	c.(589-591)TCC>TCT	p.S197S	SH2D2A_uc001fqc.1_Silent_p.S169S|SH2D2A_uc009wsh.2_Silent_p.S207S|SH2D2A_uc001fqe.2_Silent_p.S179S|SH2D2A_uc010phs.1_Silent_p.S197S	NM_003975	NP_003966	Q9NP31	SH22A_HUMAN	SH2 domain protein 2A isoform 2	197	Pro-rich.				angiogenesis|cell differentiation|signal transduction	cytoplasm|soluble fraction	SH3 domain binding|SH3/SH2 adaptor activity				0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CGGTCCTCAGGGAAAGTCCTG	0.557													20	93					0	0	0.00229938	0	0
INSRR	3645	broad.mit.edu	37	1	156814322	156814322	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:156814322A>G	uc010pht.1	-	14	2923	c.2669T>C	c.(2668-2670)GTT>GCT	p.V890A	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	890	Fibronectin type-III 3.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGTTGCCCTAACCCTGGCAGA	0.567													8	28					0	0	0.00307968	0	0
FCRL4	83417	broad.mit.edu	37	1	157557143	157557143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:157557143C>T	uc001fqw.2	-	5	906	c.770G>A	c.(769-771)GGA>GAA	p.G257E	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	257	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				CCAATAGGATCCTGAGTTTTC	0.537													30	94					0	0	0.00209593	0	0
CD5L	922	broad.mit.edu	37	1	157803006	157803006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:157803006C>T	uc001frk.3	-	5	1158	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	339	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCCACATCTTCCTGGTGGGTG	0.542													17	46					0	0	0.000958276	0	0
CD1D	912	broad.mit.edu	37	1	158152800	158152800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158152800G>A	uc001frr.2	+	5	1239	c.740G>A	c.(739-741)GGC>GAC	p.G247D	CD1D_uc009wss.2_Intron	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	247	Ig-like.|Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					GAGCAGCAGGGCACTCAGCCA	0.622													7	51					0	0	0.00307968	0	0
CD1C	911	broad.mit.edu	37	1	158263252	158263252	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158263252C>T	uc001fru.2	+	6	1280	c.988C>T	c.(988-990)CAG>TAG	p.Q330*	CD1C_uc001frv.2_Silent_p.I102I	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	330	Cytoplasmic (Potential).|Internalization signal.			CSYQDIL -> W (in Ref. 1; AAA51942).	antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					CAGCTCATATCAGGACATCCT	0.483													9	60					0	0	0.000673444	0	0
CD1E	913	broad.mit.edu	37	1	158325285	158325285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158325285G>A	uc001fse.2	+	3	790	c.551G>A	c.(550-552)AGC>AAC	p.S184N	CD1E_uc010pid.1_Missense_Mutation_p.S182N|CD1E_uc010pie.1_Missense_Mutation_p.S85N|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.S184N|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.S184N|CD1E_uc001fry.2_Missense_Mutation_p.S184N|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.S184N|CD1E_uc009wsv.2_Missense_Mutation_p.S85N|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	184					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					ATACTGCAAAGCCTTCTTGGT	0.527													6	27					0	0	0.00198382	0	0
CD1E	913	broad.mit.edu	37	1	158325885	158325885	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158325885C>T	uc001fse.2	+	4	1133	c.894C>T	c.(892-894)ATC>ATT	p.I298I	CD1E_uc010pid.1_Silent_p.I296I|CD1E_uc010pie.1_Silent_p.I199I|CD1E_uc010pif.1_Silent_p.I109I|CD1E_uc001fsd.2_Intron|CD1E_uc001fsk.2_Silent_p.I208I|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Silent_p.I109I|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Silent_p.I298I|CD1E_uc001fry.2_Intron|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Silent_p.I109I|CD1E_uc001fsi.2_Intron|CD1E_uc009wsv.2_Silent_p.I199I|CD1E_uc001frz.2_Silent_p.I208I|CD1E_uc009wsw.2_Silent_p.I56I	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	298	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					ATGATCTAATCATCCATTGGG	0.547													6	38					0	0	0.00307968	0	0
OR10R2	343406	broad.mit.edu	37	1	158450091	158450091	+	Missense_Mutation	SNP	C	T	T	rs138574952		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158450091C>T	uc010pik.1	+	1	424	c.424C>T	c.(424-426)CGC>TGC	p.R142C	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	142	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R142C(1)		pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					GGGTTATGATCGCTATGCTGC	0.498													17	88					0	0	0.00121646	0	0
OR10R2	343406	broad.mit.edu	37	1	158450377	158450377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158450377C>T	uc010pik.1	+	1	710	c.710C>T	c.(709-711)TCT>TTT	p.S237F	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	237	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					ATCTGTGTTTCTTATCTCTGC	0.433													15	46					0	0	0.00244969	0	0
OR10X1	128367	broad.mit.edu	37	1	158549611	158549611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158549611C>T	uc010pin.1	-	1	79	c.79G>A	c.(79-81)GAA>AAA	p.E27K		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	27	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AGAATGAATTCCTTCAGGATT	0.363													23	90					0	0	0.00188189	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576483	158576483	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158576483G>A	uc010pio.1	+	1	255	c.255G>A	c.(253-255)CTG>CTA	p.L85L		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					TCTCTGGCCTGGCTGGGGGGG	0.547													20	42					0	0	0.00188189	0	0
SPTA1	6708	broad.mit.edu	37	1	158589113	158589113	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158589113C>T	uc001fst.1	-	45	6628	c.6429G>A	c.(6427-6429)CAG>CAA	p.Q2143Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2143	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTTGCAGCTCCTGCTCCCGTT	0.453													13	75					0	0	0.00244969	0	0
SPTA1	6708	broad.mit.edu	37	1	158609424	158609424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158609424C>T	uc001fst.1	-	35	5127	c.4928G>A	c.(4927-4929)GGA>GAA	p.G1643E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1643	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GAGTAGGTTTCCTGCTGAAGC	0.468													9	63					0	0	0.000442599	0	0
SPTA1	6708	broad.mit.edu	37	1	158617340	158617340	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158617340G>A	uc001fst.1	-	27	4084	c.3885C>T	c.(3883-3885)CTC>CTT	p.L1295L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1295	Spectrin 13.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGGCCTTGCTGAGGAACAGGT	0.527													7	30					0	0	0.000274275	0	0
SPTA1	6708	broad.mit.edu	37	1	158650416	158650417	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158650416_158650417CC>TT	uc001fst.1	-	5	833_834	c.634_635GG>AA	c.(634-636)GGG>AAG	p.G212K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	212	Spectrin 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AACAACTCTCCCTTCTTTAGCT	0.465													17	62					0	0	6.4e-05	0	0
MNDA	4332	broad.mit.edu	37	1	158817548	158817548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158817548G>A	uc001fsz.1	+	6	1218	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	340	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					CACAATTTATGAAATACAGGA	0.373													12	56					0	0	0.000422831	0	0
PYHIN1	149628	broad.mit.edu	37	1	158914788	158914788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:158914788C>T	uc001ftb.2	+	7	1560	c.1315C>T	c.(1315-1317)CCT>TCT	p.P439S	PYHIN1_uc001ftc.2_Missense_Mutation_p.P430S|PYHIN1_uc001ftd.2_Missense_Mutation_p.P439S|PYHIN1_uc001fte.2_Missense_Mutation_p.P430S	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	439					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					TCTCAAGACTCCTCAGATGCC	0.493													9	72					0	0	0.000673444	0	0
CADM3	57863	broad.mit.edu	37	1	159166775	159166775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:159166775G>A	uc001ftl.2	+	7	1019	c.877G>A	c.(877-879)GAC>AAC	p.D293N	CADM3_uc009wsy.1_Missense_Mutation_p.D247N|CADM3_uc001ftk.2_Missense_Mutation_p.D327N|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	293	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					CAACAAGAGTGACAGTGGCAC	0.562													10	34					0	0	0.000673444	0	0
OR10J1	26476	broad.mit.edu	37	1	159409836	159409836	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:159409836C>T	uc010piv.1	+	1	288	c.288C>T	c.(286-288)CTC>CTT	p.L96L	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	96	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TCTCCAGCCTCGTAGGTATGA	0.468													14	25					0	0	0.00185496	0	0
FCRL6	343413	broad.mit.edu	37	1	159779212	159779212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:159779212C>T	uc001fud.3	+	5	667	c.625C>T	c.(625-627)CTC>TTC	p.L209F	FCRL6_uc001fuc.2_Missense_Mutation_p.L216F|FCRL6_uc009wsz.1_Missense_Mutation_p.L114F|FCRL6_uc009wta.2_Missense_Mutation_p.L209F	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	209	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					CCGTCCTGTGCTCACTCTGCA	0.647													4	20					0	0	0.00198382	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799820	159799820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:159799820G>A	uc001fue.3	+	2	415	c.205G>A	c.(205-207)GAG>AAG	p.E69K		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	69	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					AGGCTCCCTGGAGACTCTGTA	0.632													30	62					0	0	0.0024448	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799849	159799849	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:159799849C>T	uc001fue.3	+	2	444	c.234C>T	c.(232-234)GGC>GGT	p.G78G		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	78	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					GCTTCCTGGGCCGAGCCCAGC	0.617													6	54					0	0	0.00307968	0	0
SLAMF9	89886	broad.mit.edu	37	1	159922153	159922153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:159922153G>A	uc001fus.2	-	3	680	c.563C>T	c.(562-564)TCC>TTC	p.S188F	SLAMF9_uc009wtd.2_Intron|SLAMF9_uc001fut.2_Intron	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	188	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CGGCCTCCAGGATGTGCTGAG	0.582													10	44					0	0	0.00136819	0	0
ATP1A2	477	broad.mit.edu	37	1	160093111	160093111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:160093111G>A	uc001fvc.2	+	4	418	c.286G>A	c.(286-288)GGG>AGG	p.G96R	ATP1A2_uc001fvb.2_Missense_Mutation_p.G96R|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	96	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TCAGCTTTTCGGGGGGTTCTC	0.602													17	93					0	0	0.00152264	0	0
ATP1A2	477	broad.mit.edu	37	1	160106440	160106440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:160106440G>A	uc001fvc.2	+	19	2776	c.2644G>A	c.(2644-2646)GGA>AGA	p.G882R	ATP1A2_uc001fvb.2_Missense_Mutation_p.G882R|ATP1A2_uc001fvd.2_Missense_Mutation_p.G601R	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	882	Extracellular (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			ACGGCTACTGGGAATCCGCCT	0.557													11	36					0	0	0.000978159	0	0
SLAMF1	6504	broad.mit.edu	37	1	160607057	160607057	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:160607057C>T	uc001fwl.3	-	2	685	c.339G>A	c.(337-339)GAG>GAA	p.E113E	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA|SLAMF1_uc001fwm.2_Silent_p.E113E	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	113	Extracellular (Potential).				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ATCCCTCATCCTCCTTCCTGC	0.498													12	62					0	0	0.00185496	0	0
SLAMF7	57823	broad.mit.edu	37	1	160721991	160721991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:160721991G>A	uc001fwq.2	+	6	904	c.889G>A	c.(889-891)GAA>AAA	p.E297K	SLAMF7_uc010pjn.1_Missense_Mutation_p.E203K|SLAMF7_uc001fws.2_Missense_Mutation_p.E190K|SLAMF7_uc001fwr.2_Missense_Mutation_p.G262E|SLAMF7_uc010pjo.1_Missense_Mutation_p.E166K|SLAMF7_uc010pjp.1_Missense_Mutation_p.E150K|SLAMF7_uc010pjq.1_Missense_Mutation_p.G131E|SLAMF7_uc010pjr.1_Missense_Mutation_p.G115E	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	297	Cytoplasmic (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			AATCCTAAAGGAAGATCCAGC	0.378													7	47					0	0	0.000442599	0	0
CD244	51744	broad.mit.edu	37	1	160801180	160801180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:160801180C>T	uc009wtq.2	-	9	1248	c.1070G>A	c.(1069-1071)CGA>CAA	p.R357Q	CD244_uc001fxa.2_Missense_Mutation_p.R352Q|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Missense_Mutation_p.R260Q	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	357	Cytoplasmic (Potential).				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCGGCTCAATCGAGCAGGGTT	0.413													47	83					0	0	0.00361006	0	0
USF1	7391	broad.mit.edu	37	1	161010423	161010423	+	Silent	SNP	G	A	A	rs138288820		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:161010423G>A	uc001fxi.2	-	9	852	c.657C>T	c.(655-657)ATC>ATT	p.I219I	F11R_uc010pjw.1_5'Flank|F11R_uc001fxf.3_5'Flank|TSTD1_uc010pjx.1_5'Flank|TSTD1_uc009wtw.2_5'Flank|TSTD1_uc001fxh.3_5'Flank|USF1_uc001fxj.2_Silent_p.I160I	NM_007122	NP_009053	P22415	USF1_HUMAN	upstream stimulatory factor 1 isoform 1	219	Helix-loop-helix motif.				cellular response to insulin stimulus|glucose homeostasis|late viral mRNA transcription|lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter by glucose|response to hypoxia|response to UV	transcription factor complex	bHLH transcription factor binding|histone deacetylase binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(52;6.73e-18)|Breast(13;0.012)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			AGAGCTGCACGATCCAGTTGT	0.542													9	43					0	0	0.000442599	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161021199	161021199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:161021199C>T	uc001fxl.2	-	10	1671	c.1325G>A	c.(1324-1326)AGG>AAG	p.R442K	ARHGAP30_uc001fxk.2_Missense_Mutation_p.R442K|ARHGAP30_uc001fxm.2_Missense_Mutation_p.R288K|ARHGAP30_uc009wtx.2_Missense_Mutation_p.R115K|ARHGAP30_uc001fxn.1_Missense_Mutation_p.R288K	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	442					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			ACGGGTGAGCCTGGCCAAGGA	0.438													15	24					0	0	0.00152264	0	0
USP21	27005	broad.mit.edu	37	1	161133981	161133981	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:161133981C>T	uc010pke.1	+	10	1623	c.1246C>T	c.(1246-1248)CTG>TTG	p.L416L	USP21_uc010pkc.1_Silent_p.L416L|USP21_uc010pkd.1_Silent_p.L416L|USP21_uc010pkf.1_Silent_p.L416L|PPOX_uc001fyj.2_5'Flank|PPOX_uc001fyn.2_5'Flank|PPOX_uc001fyg.2_5'Flank|PPOX_uc001fyl.2_5'Flank|PPOX_uc001fym.2_5'Flank|PPOX_uc001fyk.2_5'Flank|PPOX_uc001fyh.2_5'Flank|PPOX_uc010pkg.1_5'Flank|PPOX_uc009wuc.1_5'Flank|PPOX_uc010pkh.1_5'Flank|PPOX_uc001fyi.2_5'Flank	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21	416					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CAAGGTGTCTCTGCGGGATTG	0.478													6	57					0	0	0.00198382	0	0
MPZ	4359	broad.mit.edu	37	1	161276688	161276688	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:161276688T>C	uc001gaf.3	-	3	325	c.288A>G	c.(286-288)CAA>CAG	p.Q96Q	MPZ_uc010pko.1_RNA	NM_000530	NP_000521	P25189	MYP0_HUMAN	myelin protein zero	86	Ig-like V-type.|Extracellular (Potential).				synaptic transmission	integral to plasma membrane	structural molecule activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)	Breast(1374;0.181)	BRCA - Breast invasive adenocarcinoma(70;0.00376)			CAATGTAGGGTTGTCCCTTGG	0.498													8	38					0	0	0.000274275	0	0
FCGR3B	2215	broad.mit.edu	37	1	161594380	161594380	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:161594380G>A	uc009wul.2	-	5	901	c.627C>T	c.(625-627)GTC>GTT	p.V209V		NM_000570	NP_000561	O75015	FCG3B_HUMAN	low affinity immunoglobulin gamma Fc region	209					immune response	anchored to membrane|extracellular region|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AGCAGAAAGAGACTTGGTACC	0.433													26	37					0	0	0.00327116	0	0
FCRLA	84824	broad.mit.edu	37	1	161683078	161683078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:161683078G>A	uc001gbe.2	+	6	1299	c.1057G>A	c.(1057-1059)GAT>AAT	p.D353N	FCRLA_uc001gbd.2_Missense_Mutation_p.D347N|FCRLA_uc001gbf.2_Missense_Mutation_p.D258N|FCRLA_uc001gbg.2_Missense_Mutation_p.D207N|FCRLA_uc009wuo.2_Missense_Mutation_p.D213N|FCRLA_uc009wup.2_Missense_Mutation_p.D163N|FCRLA_uc009wuq.2_Missense_Mutation_p.D112N	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	330					cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			ACACATGCAGGATGTGAGAGT	0.522													8	39					0	0	0.000274275	0	0
FCRLB	127943	broad.mit.edu	37	1	161692490	161692490	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:161692490C>T	uc001gbh.2	+	3	262	c.28C>T	c.(28-30)CTG>TTG	p.L10L	FCRLB_uc009wus.2_Silent_p.L10L|FCRLB_uc001gbj.2_Silent_p.L10L|FCRLB_uc001gbk.2_Silent_p.L10L|FCRLB_uc001gbl.2_Silent_p.L10L|FCRLB_uc001gbm.2_Silent_p.L10L|FCRLB_uc001gbi.2_Silent_p.L10L	NM_001002901	NP_001002901	Q6BAA4	FCRLB_HUMAN	Fc receptor-like B	10						endoplasmic reticulum					0	all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00634)			CCTTCTGCTCCTGGGTGAGTC	0.542													40	52					0	0	0.00285205	0	0
NOS1AP	9722	broad.mit.edu	37	1	162302877	162302877	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:162302877A>C	uc001gbv.2	+	5	802	c.415A>C	c.(415-417)AAT>CAT	p.N139H	NOS1AP_uc010pkr.1_Missense_Mutation_p.N134H|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.N134H	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	139	PID.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			TGGTGCCAGCAATATCTTCAG	0.433													4	59					0	0	0.00116845	0	0
SH2D1B	117157	broad.mit.edu	37	1	162381788	162381788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:162381788G>A	uc001gbz.1	-	1	141	c.19C>T	c.(19-21)CAT>TAT	p.H7Y	SH2D1B_uc001gca.1_Missense_Mutation_p.H7Y	NM_053282	NP_444512	O14796	SH21B_HUMAN	SH2 domain containing 1B	7	SH2.									pancreas(1)	1	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			AGACGTCCATGGTAGTAAGGC	0.522													11	33					0	0	0.000673444	0	0
LMX1A	4009	broad.mit.edu	37	1	165218718	165218718	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:165218718C>T	uc001gcy.1	-	3	644	c.423G>A	c.(421-423)CAG>CAA	p.Q141Q	LMX1A_uc001gcz.1_Silent_p.Q141Q	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	141	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					TGCAGAGCAGCTGCCCCTCCT	0.607													5	50					0	0	0.000602214	0	0
ILDR2	387597	broad.mit.edu	37	1	166908758	166908758	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:166908758A>C	uc001gdx.1	-	4	605	c.549T>G	c.(547-549)ATT>ATG	p.I183M		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	183	Extracellular (Potential).					integral to membrane				ovary(1)	1						TACCTGGCATAATCTCCACAG	0.408													4	72					0	0	0.00024832	0	0
ILDR2	387597	broad.mit.edu	37	1	166927179	166927179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:166927179G>A	uc001gdx.1	-	2	262	c.206C>T	c.(205-207)TCC>TTC	p.S69F		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	69	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						CATGCCCAAGGATTCTCCCAT	0.547													5	42					0	0	0.000602214	0	0
MAEL	84944	broad.mit.edu	37	1	166958983	166958983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:166958983G>A	uc001gdy.1	+	2	213	c.142G>A	c.(142-144)GAG>AAG	p.E48K	MAEL_uc001gdz.1_Intron|MAEL_uc009wvf.1_5'Flank	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	48	HMG box.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						GCTTCTGAGGGAGGAAGAAAA	0.547													10	61					0	0	0.000442599	0	0
DUSP27	92235	broad.mit.edu	37	1	167086573	167086573	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:167086573C>G	uc001geb.1	+	3	214	c.214C>G	c.(214-216)CCA>GCA	p.P72A		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	72					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AGAACTCAAGCCACCGGGGGT	0.557													2	5					0	0	6.4e-05	0	0
DUSP27	92235	broad.mit.edu	37	1	167096099	167096099	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:167096099G>A	uc001geb.1	+	5	1731	c.1731G>A	c.(1729-1731)GGG>GGA	p.G577G		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	577					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AGGCAGTAGGGGAGAAGAACC	0.557													8	27					0	0	0.000274275	0	0
ADCY10	55811	broad.mit.edu	37	1	167830154	167830154	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:167830154C>T	uc001ger.2	-	15	2062	c.1764G>A	c.(1762-1764)TTG>TTA	p.L588L	ADCY10_uc009wvk.2_Silent_p.L496L|ADCY10_uc010plj.1_Silent_p.L435L|ADCY10_uc009wvl.2_Silent_p.L587L	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	588					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						ACTTTTCATCCAACAGTGTCA	0.398													28	77					0	0	0.00375469	0	0
XCL1	6375	broad.mit.edu	37	1	168549308	168549308	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:168549308G>A	uc001gfo.1	+	2	89	c.69G>A	c.(67-69)GGG>GGA	p.G23G		NM_002995	NP_002986	P47992	XCL1_HUMAN	chemokine (C motif) ligand 1	23					CD4-positive, alpha-beta T cell proliferation|CD8-positive, alpha-beta T cell proliferation|cell-cell signaling|cellular response to interleukin-4|cellular response to transforming growth factor beta stimulus|immunoglobulin production in mucosal tissue|lymphocyte chemotaxis|negative regulation of interferon-gamma production|negative regulation of interleukin-2 production|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T cell cytokine production|negative regulation of T-helper 1 cell activation|negative regulation of transcription, DNA-dependent|neutrophil chemotaxis|positive regulation of activated T cell proliferation|positive regulation of B cell chemotaxis|positive regulation of granzyme A production|positive regulation of granzyme B production|positive regulation of interleukin-10 production|positive regulation of natural killer cell chemotaxis|positive regulation of neutrophil chemotaxis|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of T cell chemotaxis|positive regulation of T cell cytokine production|positive regulation of T cell mediated cytotoxicity|positive regulation of thymocyte migration|positive regulation of transforming growth factor-beta production|regulation of inflammatory response|release of sequestered calcium ion into cytosol|response to virus|T-helper 1 cell cytokine production|T-helper 2 cell cytokine production	extracellular space	chemokine activity|protein homodimerization activity				0	all_hematologic(923;0.208)					CAGGTGTAGGGAGTGAAGTCT	0.433													6	18					0	0	0.00116845	0	0
F5	2153	broad.mit.edu	37	1	169511128	169511128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169511128G>A	uc001ggg.1	-	13	3345	c.3200C>T	c.(3199-3201)TCG>TTG	p.S1067L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1067	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	AAGCACCAACGAATGCTTAAG	0.438													18	109					0	0	0.00152264	0	0
F5	2153	broad.mit.edu	37	1	169511792	169511792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169511792C>T	uc001ggg.1	-	13	2681	c.2536G>A	c.(2536-2538)GGG>AGG	p.G846R		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	846	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	AGACGTATCCCTGTGACATCT	0.458													18	61					0	0	0.00121646	0	0
F5	2153	broad.mit.edu	37	1	169511939	169511939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169511939C>T	uc001ggg.1	-	13	2534	c.2389G>A	c.(2389-2391)GCC>ACC	p.A797T		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	797	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TGAGAAGGGGCTTTCTGAGGT	0.433													19	48					0	0	0.00152264	0	0
F5	2153	broad.mit.edu	37	1	169512207	169512207	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169512207C>T	uc001ggg.1	-	13	2266	c.2121G>A	c.(2119-2121)CGG>CGA	p.R707R		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	707	B.	Cleavage; by activated protein C.			cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CATGCATTTTCCGTGTAGCCA	0.418													29	127					0	0	0.00327116	0	0
SELP	6403	broad.mit.edu	37	1	169565292	169565292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169565292G>A	uc001ggi.3	-	12	2037	c.1972C>T	c.(1972-1974)CAT>TAT	p.H658Y	SELP_uc001ggh.2_Missense_Mutation_p.H493Y|SELP_uc009wvr.2_Missense_Mutation_p.H658Y	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	658	Extracellular (Potential).|Sushi 8.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	GTTCCCGGATGATGCCTACAG	0.502													13	70					0	0	0.00185496	0	0
SELP	6403	broad.mit.edu	37	1	169576250	169576250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169576250C>T	uc001ggi.3	-	9	1521	c.1456G>A	c.(1456-1458)GGA>AGA	p.G486R	SELP_uc001ggh.2_Missense_Mutation_p.G321R|SELP_uc009wvr.2_Missense_Mutation_p.G486R	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	486	Extracellular (Potential).|Sushi 5.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	ACACTTGCTCCCACCAGGAGC	0.493													10	45					0	0	0.000978159	0	0
SELP	6403	broad.mit.edu	37	1	169586560	169586560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169586560G>A	uc001ggi.3	-	3	252	c.187C>T	c.(187-189)CGC>TGC	p.R63C	SELP_uc001ggh.2_5'UTR|SELP_uc009wvr.2_Missense_Mutation_p.R63C	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	63	Extracellular (Potential).|C-type lectin.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	TCTGTGTAGCGATTCTGGCAG	0.403													19	60					0	0	0.00188189	0	0
SELE	6401	broad.mit.edu	37	1	169696611	169696611	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169696611C>T	uc001ggm.3	-	10	1681	c.1524G>A	c.(1522-1524)GGG>GGA	p.G508G	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	508	Extracellular (Potential).|Sushi 6.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					ACACGGGCTCCCCACTGCAGC	0.522													9	34					0	0	0.000673444	0	0
SELE	6401	broad.mit.edu	37	1	169697057	169697057	+	Missense_Mutation	SNP	C	T	T	rs143837593		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169697057C>T	uc001ggm.3	-	9	1448	c.1291G>A	c.(1291-1293)GAT>AAT	p.D431N	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	431	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TGGACAGCATCGCATCTCACA	0.502													11	43					0	0	0.00136819	0	0
SELE	6401	broad.mit.edu	37	1	169698418	169698418	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:169698418G>A	uc001ggm.3	-	7	1156	c.999C>T	c.(997-999)TTC>TTT	p.F333F	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	333	Extracellular (Potential).|Sushi 3.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CCTCACAGGTGAAGTTGCAGG	0.552													6	22					0	0	0.00116845	0	0
TNFSF4	7292	broad.mit.edu	37	1	173176298	173176298	+	Silent	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:173176298G>C	uc001giw.2	-	1	174	c.18C>G	c.(16-18)CCC>CCG	p.P6P	TNFSF4_uc001giv.2_5'Flank	NM_003326	NP_003317	P23510	TNFL4_HUMAN	tumor necrosis factor (ligand) superfamily,	6	Cytoplasmic (Potential).				acute inflammatory response|cellular response to lipopolysaccharide|cellular response to prostaglandin E stimulus|chemokine (C-C motif) ligand 11 production|defense response to nematode|interleukin-4-dependent isotype switching to IgE isotypes|memory T cell activation|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of regulatory T cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T-helper 1 cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of alpha-beta T cell proliferation|positive regulation of B cell activation|positive regulation of immunoglobulin mediated immune response|positive regulation of immunoglobulin secretion|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-13 production|positive regulation of interleukin-4 production|positive regulation of interleukin-6 production|positive regulation of memory T cell differentiation|positive regulation of T cell cytokine production|positive regulation of T-helper 2 cell differentiation|positive regulation of type 2 immune response|response to virus|signal transduction|T-helper 2 cell activation	cell surface|extracellular space|integral to plasma membrane	cytokine activity			central_nervous_system(1)	1						TCTCTTCCAGGGGTTGGACCC	0.498													10	27					0	0	0.00136819	0	0
RABGAP1L	9910	broad.mit.edu	37	1	174219735	174219735	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:174219735G>A	uc001gjx.2	+	6	1035	c.840G>A	c.(838-840)TTG>TTA	p.L280L	RABGAP1L_uc009wwq.1_Silent_p.L280L|RABGAP1L_uc001gjw.2_Silent_p.L243L|RABGAP1L_uc001gjy.2_5'UTR	NM_014857	NP_055672	Q5R372	RBG1L_HUMAN	RAB GTPase activating protein 1-like isoform A	280	PID.				regulation of protein localization	early endosome|Golgi apparatus|nucleus	Rab GTPase activator activity			ovary(2)|lung(1)|kidney(1)	4						GTGTCTCCTTGGAGGTAAAAG	0.393													25	53					0	0	0.000878237	0	0
TNN	63923	broad.mit.edu	37	1	175105999	175105999	+	Missense_Mutation	SNP	G	C	C	rs147711632	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:175105999G>C	uc001gkl.1	+	17	3583	c.3470G>C	c.(3469-3471)CGG>CCG	p.R1157P		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1157	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		ACTCCAGCGCGGTATGAGGTG	0.453													3	43					0	0	0.000602214	0	0
TNR	7143	broad.mit.edu	37	1	175331865	175331865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:175331865C>T	uc001gkp.1	-	12	2869	c.2788G>A	c.(2788-2790)GAA>AAA	p.E930K	TNR_uc009wwu.1_Missense_Mutation_p.E930K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	930	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGGCTGATTTCGTATTCGGTA	0.532													6	31					0	0	0.00116845	0	0
TNR	7143	broad.mit.edu	37	1	175362936	175362936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:175362936C>T	uc001gkp.1	-	4	1417	c.1336G>A	c.(1336-1338)GAA>AAA	p.E446K	TNR_uc009wwu.1_Missense_Mutation_p.E446K|TNR_uc010pmz.1_3'UTR	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	446	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AAGCTGATTTCCCACCCATCG	0.473													25	122					0	0	0.00127121	0	0
TNR	7143	broad.mit.edu	37	1	175375553	175375553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:175375553C>T	uc001gkp.1	-	1	379	c.298G>A	c.(298-300)GAG>AAG	p.E100K	TNR_uc009wwu.1_Missense_Mutation_p.E100K|TNR_uc010pmz.1_Missense_Mutation_p.E100K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	100					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCCATGTACTCTGCCAGAGTC	0.562													13	41					0	0	0.00136819	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564105	176564105	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:176564105C>T	uc001gkz.2	+	3	2529	c.1365C>T	c.(1363-1365)GTC>GTT	p.V455V	PAPPA2_uc001gky.1_Silent_p.V455V|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	455	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTGACTTGGTCCTGACAGCGA	0.547													12	74					0	0	0.00185496	0	0
ASTN1	460	broad.mit.edu	37	1	176863776	176863776	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:176863776G>A	uc001glc.2	-	17	3074	c.2862C>T	c.(2860-2862)ACC>ACT	p.T954T	ASTN1_uc001glb.1_Silent_p.T954T|ASTN1_uc001gld.1_Silent_p.T954T	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	962					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GCTCAGCAGGGGTGTCAGGGC	0.612													9	35					0	0	0.000673444	0	0
FAM5B	57795	broad.mit.edu	37	1	177226508	177226508	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:177226508G>A	uc001glf.2	+	4	969	c.657G>A	c.(655-657)ACG>ACA	p.T219T	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_Silent_p.T114T	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	219						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AGATAGCCACGGGGGCCATCA	0.612													5	10					0	0	0.000602214	0	0
FAM5B	57795	broad.mit.edu	37	1	177250484	177250484	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:177250484G>A	uc001glf.2	+	8	2484	c.2172G>A	c.(2170-2172)AGG>AGA	p.R724R	FAM5B_uc001glg.2_Silent_p.R619R	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	724						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TTGAGCTCAGGGACCGGGTGA	0.537													14	64					0	0	0.00316338	0	0
RASAL2	9462	broad.mit.edu	37	1	178427460	178427460	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:178427460C>T	uc001glr.2	+	12	2735	c.2610C>T	c.(2608-2610)ATC>ATT	p.I870I	RASAL2_uc001glq.2_Silent_p.I1011I|RASAL2_uc009wxc.2_Silent_p.I384I	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	870					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						AGGCCCAGATCCGAAAAGTGG	0.567													6	26					0	0	0.00116845	0	0
NPHS2	7827	broad.mit.edu	37	1	179520481	179520481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:179520481G>A	uc001gmq.3	-	8	1064	c.979C>T	c.(979-981)CTT>TTT	p.L327F	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmo.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron|NPHS2_uc009wxi.2_Missense_Mutation_p.L259F|C1orf125_uc001gmr.2_RNA	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	327	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						AGAGACTGAAGGGTGTGGAGG	0.532													9	45					0	0	0.00136819	0	0
TDRD5	163589	broad.mit.edu	37	1	179632540	179632540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:179632540C>T	uc001gnf.1	+	15	2651	c.2401C>T	c.(2401-2403)CTT>TTT	p.L801F	TDRD5_uc010pnp.1_Missense_Mutation_p.L855F|TDRD5_uc001gnh.1_Missense_Mutation_p.L356F	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	801					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GCCTTCAGGCCTTGTAAATGG	0.398													15	35					0	0	0.000422831	0	0
TOR1AIP2	163590	broad.mit.edu	37	1	179815540	179815540	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:179815540T>G	uc001gnk.2	-	6	1467	c.1079A>C	c.(1078-1080)AAG>ACG	p.K360T	TOR1AIP2_uc001gnl.2_Missense_Mutation_p.K360T	NM_145034	NP_659471	Q8NFQ8	TOIP2_HUMAN	torsin A interacting protein 2	360						endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(1)	1						CACAGCAGCCTTCTGGCCATT	0.512													10	45					0	0	0.00136819	0	0
CEP350	9857	broad.mit.edu	37	1	179966020	179966020	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:179966020T>G	uc001gnt.2	+	6	1111	c.728T>G	c.(727-729)ATG>AGG	p.M243R	CEP350_uc001gnr.1_Missense_Mutation_p.M217R|CEP350_uc009wxl.2_Missense_Mutation_p.M242R|CEP350_uc001gnu.2_Missense_Mutation_p.M77R	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	243						centrosome|nucleus|spindle				ovary(4)	4						GTGAATAACATGGCCCATGAT	0.388													9	49					0	0	0.000442599	0	0
QSOX1	5768	broad.mit.edu	37	1	180153078	180153078	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:180153078C>A	uc001gnz.2	+	7	855	c.780C>A	c.(778-780)ACC>ACA	p.T260T	QSOX1_uc001gny.2_Silent_p.T260T|QSOX1_uc001goa.2_Silent_p.T260T	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	260					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						CCTTCTATACCGCTTACCTGC	0.522													8	216					0.00307968	0.00853147	0.00307968	1	0
CACNA1E	777	broad.mit.edu	37	1	181689349	181689349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:181689349G>A	uc001gow.2	+	14	1924	c.1759G>A	c.(1759-1761)GCT>ACT	p.A587T	CACNA1E_uc009wxs.2_Missense_Mutation_p.A494T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	587	Cytoplasmic (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TAGGTATTGGGCTTCCCTACG	0.463													9	32					0	0	0.000673444	0	0
CACNA1E	777	broad.mit.edu	37	1	181701924	181701924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:181701924G>A	uc001gow.2	+	20	2867	c.2702G>A	c.(2701-2703)GGA>GAA	p.G901E	CACNA1E_uc009wxs.2_Missense_Mutation_p.G789E|CACNA1E_uc001gox.1_Missense_Mutation_p.G127E|CACNA1E_uc009wxt.2_Missense_Mutation_p.G127E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	901	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GAGGCAGGGGGAGGAGAGGCT	0.662													7	43					0	0	0.00307968	0	0
CACNA1E	777	broad.mit.edu	37	1	181705548	181705548	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:181705548T>C	uc001gow.2	+	22	3565	c.3400T>C	c.(3400-3402)TTC>CTC	p.F1134L	CACNA1E_uc009wxs.2_Missense_Mutation_p.F1022L|CACNA1E_uc001gox.1_Missense_Mutation_p.F360L|CACNA1E_uc009wxt.2_Missense_Mutation_p.F360L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1134	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CAGCTCAATGTTCATCTTCAG	0.458													4	8					0	0	0.00116845	0	0
CACNA1E	777	broad.mit.edu	37	1	181726166	181726166	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:181726166C>G	uc001gow.2	+	30	4398	c.4233C>G	c.(4231-4233)CCC>CCG	p.P1411P	CACNA1E_uc009wxs.2_Silent_p.P1299P|CACNA1E_uc001gox.1_Silent_p.P637P|CACNA1E_uc009wxt.2_Silent_p.P637P	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1411	III.|Helical; Name=S6 of repeat III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGGTCTTCCCCTTCTTCTTTG	0.483													8	47					0	0	0.000274275	0	0
CACNA1E	777	broad.mit.edu	37	1	181764136	181764136	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:181764136A>G	uc001gow.2	+	45	6200	c.6035A>G	c.(6034-6036)CAC>CGC	p.H2012R	CACNA1E_uc009wxs.2_Missense_Mutation_p.H1900R|CACNA1E_uc009wxt.2_Missense_Mutation_p.H1281R	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2055	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGGAGTTACCACTCCTCCTTG	0.542													8	46					0	0	0.000978159	0	0
ZNF648	127665	broad.mit.edu	37	1	182025563	182025563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:182025563C>T	uc001goz.2	-	2	1791	c.1583G>A	c.(1582-1584)GGA>GAA	p.G528E		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	528					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGGCCTCTCTCCGTTGTGCAT	0.617													6	19					0	0	0.00116845	0	0
TEDDM1	127670	broad.mit.edu	37	1	182368920	182368920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:182368920G>A	uc001gpe.2	-	1	832	c.701C>T	c.(700-702)ACT>ATT	p.T234I		NM_172000	NP_741997	Q5T9Z0	TEDM1_HUMAN	putative membrane protein HE9	234						integral to membrane				ovary(2)	2						TTTGGGCCCAGTCAGCTTCAA	0.488													8	38					0	0	0.000274275	0	0
LAMC2	3918	broad.mit.edu	37	1	183196665	183196666	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:183196665_183196666GG>TT	uc001gqa.2	+	10	1615_1616	c.1301_1302GG>TT	c.(1300-1302)GGG>GTT	p.G434V	LAMC2_uc001gpz.3_Missense_Mutation_p.G434V|LAMC2_uc010poa.1_Missense_Mutation_p.G134V	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	434	Laminin EGF-like 5.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						TGTTATTCAGGGGATGAGAATC	0.515													8	124					0	0	6.4e-05	0	0
RGL1	23179	broad.mit.edu	37	1	183895301	183895301	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:183895301T>C	uc001gqo.2	+	18	2339	c.2182T>C	c.(2182-2184)TTC>CTC	p.F728L	RGL1_uc001gqm.2_Missense_Mutation_p.F763L|RGL1_uc010pog.1_Missense_Mutation_p.F726L|RGL1_uc010poh.1_Missense_Mutation_p.F726L|RGL1_uc010poi.1_Missense_Mutation_p.F699L	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	728	Ras-associating.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						GAACTTTGACTTCATTTTGCG	0.448													22	104					0	0	0.00106085	0	0
GLT25D2	23127	broad.mit.edu	37	1	183938499	183938499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:183938499C>T	uc001gqr.2	-	5	1108	c.736G>A	c.(736-738)GAG>AAG	p.E246K	GLT25D2_uc010poj.1_Missense_Mutation_p.E246K|GLT25D2_uc001gqs.2_Missense_Mutation_p.E126K	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	246					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						TCCGAGGCCTCCTTCCTGAGG	0.542													10	46					0	0	0.000442599	0	0
FAM129A	116496	broad.mit.edu	37	1	184765049	184765049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:184765049C>T	uc001gra.2	-	14	2043	c.1849G>A	c.(1849-1851)GAA>AAA	p.E617K	FAM129A_uc001grb.1_Missense_Mutation_p.E380K	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	617					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TGGAATACTTCGTTACTGAGG	0.572													16	53					0	0	0.00074312	0	0
C1orf26	54823	broad.mit.edu	37	1	185143738	185143738	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:185143738T>C	uc001grg.3	+	5	573	c.459T>C	c.(457-459)AGT>AGC	p.S153S	C1orf26_uc001grh.3_Silent_p.S153S	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	153											0						GCCTTAGTAGTCCTAAGATTG	0.368													9	63					0	0	0.000442599	0	0
HMCN1	83872	broad.mit.edu	37	1	185902767	185902767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:185902767G>A	uc001grq.1	+	11	1868	c.1639G>A	c.(1639-1641)GTG>ATG	p.V547M		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	547	Ig-like C2-type 2.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CATCAGTGCGGTGGATTACAA	0.478													9	33					0	0	0.000274275	0	0
HMCN1	83872	broad.mit.edu	37	1	186106980	186106980	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:186106980G>A	uc001grq.1	+	89	14029	c.13800G>A	c.(13798-13800)AGG>AGA	p.R4600R	HMCN1_uc001grs.1_Silent_p.R169R	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4600	TSP type-1 2.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AATGCACAAGGAGCTGTGGAC	0.463													5	59					0	0	0.00198382	0	0
PRG4	10216	broad.mit.edu	37	1	186266058	186266058	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:186266058C>T	uc001gru.3	+	2	102	c.51C>T	c.(49-51)TTC>TTT	p.F17F	PRG4_uc001grt.3_Silent_p.F17F|PRG4_uc009wyl.2_Silent_p.F17F|PRG4_uc009wym.2_Silent_p.F17F|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	17					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						TGTCTGTTTTCGTGATTCAGC	0.358													5	36					0	0	0.00198382	0	0
PRG4	10216	broad.mit.edu	37	1	186273947	186273948	+	Missense_Mutation	DNP	AA	TC	TC			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:186273947_186273948AA>TC	uc001gru.3	+	6	542_543	c.491_492AA>TC	c.(490-492)CAA>CTC	p.Q164L	PRG4_uc001grt.3_Missense_Mutation_p.Q123L|PRG4_uc009wyl.2_Intron|PRG4_uc009wym.2_Intron|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	164	Ser-rich.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						TCTGAAAATCAAGAGtcctcct	0.262													10	53					0	0	6.4e-05	0	0
TPR	7175	broad.mit.edu	37	1	186286631	186286631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:186286631G>A	uc001grv.2	-	49	7220	c.6923C>T	c.(6922-6924)CCT>CTT	p.P2308L		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	2308					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TGAGCTAGAAGGAGGATCCTG	0.433			T	NTRK1	papillary thyroid								12	59					0	0	0.00244969	0	0
PTGS2	5743	broad.mit.edu	37	1	186648472	186648472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:186648472C>T	uc001gsb.2	-	2	288	c.151G>A	c.(151-153)GGA>AGA	p.G51R	PTGS2_uc009wyo.2_5'UTR	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	51	EGF-like.				cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	CAGTTTTCTCCATAGAATCCT	0.433													8	49					0	0	0.000442599	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186934669	186934669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:186934669C>T	uc001gsc.2	+	15	1913	c.1708C>T	c.(1708-1710)CTC>TTC	p.L570F	PLA2G4A_uc010pos.1_Missense_Mutation_p.L510F	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	570	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	AGGGGTTGATCTCATAATCTC	0.438													6	76					0	0	0.00198382	0	0
CDC73	79577	broad.mit.edu	37	1	193119437	193119437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:193119437C>T	uc001gtb.2	+	9	1075	c.832C>T	c.(832-834)CCC>TCC	p.P278S		NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	278					cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						TTTACAGGATCCCACTTTGCG	0.274									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				9	62					0	0	0.000442599	0	0
CFH	3075	broad.mit.edu	37	1	196711041	196711041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:196711041C>T	uc001gtj.3	+	19	3233	c.2993C>T	c.(2992-2994)GCC>GTC	p.A998V		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	998	Sushi 17.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTTGAAAATGCCATACCCATG	0.363													12	49					0	0	0.00136819	0	0
CFHR5	81494	broad.mit.edu	37	1	196971688	196971688	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:196971688G>A	uc001gts.3	+	8	1352	c.1224G>A	c.(1222-1224)CAG>CAA	p.Q408Q		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	408	Sushi 7.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TGAATTATCAGGATGGAGAAA	0.368													17	25					0	0	0.000958276	0	0
ASPM	259266	broad.mit.edu	37	1	197097732	197097732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:197097732G>A	uc001gtu.2	-	10	3081	c.2824C>T	c.(2824-2826)CGT>TGT	p.R942C	ASPM_uc001gtv.2_Missense_Mutation_p.R942C|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	942	CH 1.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CCAAGGTGACGGGAAAGGTCA	0.378													8	34					0	0	0.000274275	0	0
CRB1	23418	broad.mit.edu	37	1	197396624	197396624	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:197396624T>G	uc001gtz.2	+	7	2304	c.2169T>G	c.(2167-2169)GGT>GGG	p.G723G	CRB1_uc010poz.1_Silent_p.G654G|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.G611G|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.G204G|CRB1_uc001gub.1_Silent_p.G372G	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	723	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ACTCCACTGGTTATGTCATCT	0.428													6	54					0	0	0.00116845	0	0
ATP6V1G3	127124	broad.mit.edu	37	1	198509744	198509744	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:198509744G>A	uc001gup.2	-	2	143	c.37C>T	c.(37-39)CAG>TAG	p.Q13*	ATP6V1G3_uc009wzd.2_Nonsense_Mutation_p.Q13*|ATP6V1G3_uc001guo.2_Nonsense_Mutation_p.Q13*	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	13	Potential.				cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						TTTTCTGCCTGAAGAAGCTGG	0.438													29	72					0	0	0.000814825	0	0
PTPRC	5788	broad.mit.edu	37	1	198665938	198665938	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:198665938A>T	uc001gur.1	+	4	372	c.192A>T	c.(190-192)GAA>GAT	p.E64D	PTPRC_uc001gus.1_Missense_Mutation_p.E64D|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Intron|PTPRC_uc009wzf.1_Intron|PTPRC_uc010ppg.1_Intron|PTPRC_uc001guu.1_Missense_Mutation_p.E107D|PTPRC_uc001guv.1_Intron|PTPRC_uc001guw.1_Intron	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	64	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TTGAAAGAGAAAATGACTTCT	0.458													14	72					0	0	0.00185496	0	0
NR5A2	2494	broad.mit.edu	37	1	200090049	200090049	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:200090049C>T	uc001gvb.2	+	7	1550	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	NR5A2_uc001gvc.2_Silent_p.F402F|NR5A2_uc009wzh.2_Silent_p.F408F|NR5A2_uc010pph.1_Silent_p.F376F	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	448					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					AACGAGAGTTCGTATGTCTGA	0.413													13	74					0	0	0.00136819	0	0
FAM58B	339521	broad.mit.edu	37	1	200183373	200183373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:200183373G>A	uc009wzi.1	+	1	718	c.682G>A	c.(682-684)GAC>AAC	p.D228N		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	228					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					GTTTAGTGACGACCTTACCAA	0.547													11	42					0	0	0.000566183	0	0
KIF14	9928	broad.mit.edu	37	1	200584717	200584717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:200584717G>A	uc010ppk.1	-	3	1572	c.1133C>T	c.(1132-1134)TCC>TTC	p.S378F	KIF14_uc010ppj.1_5'UTR	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	378	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						GACTACCTGGGATGCTTTTTC	0.323													9	61					0	0	0.000442599	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200822453	200822453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:200822453G>A	uc001gvl.2	+	14	3956	c.3686G>A	c.(3685-3687)AGA>AAA	p.R1229K	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.R1218K|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.R1202K	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1229						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AGAGCACGCAGAGAATTTATT	0.368													18	67					0	0	0.00121646	0	0
KIF21B	23046	broad.mit.edu	37	1	200968558	200968558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:200968558C>T	uc001gvs.1	-	13	2121	c.1804G>A	c.(1804-1806)GAG>AAG	p.E602K	KIF21B_uc001gvr.1_Missense_Mutation_p.E602K|KIF21B_uc009wzl.1_Missense_Mutation_p.E602K|KIF21B_uc010ppn.1_Missense_Mutation_p.E602K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	602	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CGCCCTTCCTCCTCCTCACAG	0.642													12	48					0	0	0.00244969	0	0
CACNA1S	779	broad.mit.edu	37	1	201031122	201031122	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:201031122G>A	uc001gvv.2	-	24	3230	c.3003C>T	c.(3001-3003)CTC>CTT	p.L1001L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1001	III.|Extracellular (Potential).|Dihydropyridine binding (By similarity).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCATGGCTGAGAGCACATTGT	0.582													6	16					0	0	0.00307968	0	0
PKP1	5317	broad.mit.edu	37	1	201287819	201287819	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:201287819C>T	uc001gwd.2	+	6	1379	c.1128C>T	c.(1126-1128)GCC>GCT	p.A376A	PKP1_uc001gwe.2_Silent_p.A376A|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	376	ARM 4.				cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						CTGTTCTGGCCGACCGCGTCA	0.582													5	11					0	0	0.000602214	0	0
PPFIA4	8497	broad.mit.edu	37	1	203037626	203037626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:203037626C>T	uc001gyz.2	+	14	2269	c.1676C>T	c.(1675-1677)TCT>TTT	p.S559F	PPFIA4_uc009xaj.2_Missense_Mutation_p.S1190F|PPFIA4_uc010pqf.1_Missense_Mutation_p.S772F|PPFIA4_uc001gza.2_Missense_Mutation_p.S550F|PPFIA4_uc001gzb.1_Missense_Mutation_p.S245F|PPFIA4_uc001gzc.1_Missense_Mutation_p.S101F	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	559	SAM 3.				cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						TGGGTCCAGTCTATTGGGCTC	0.557													5	16					0	0	0.000602214	0	0
OPTC	26254	broad.mit.edu	37	1	203467963	203467963	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:203467963G>A	uc001gzu.1	+	4	641	c.525G>A	c.(523-525)GGG>GGA	p.G175G		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	175	LRR 1.					proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			ACTTCAAAGGGCTGAGTATGT	0.557													7	33					0	0	0.00198382	0	0
ATP2B4	493	broad.mit.edu	37	1	203682354	203682354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:203682354C>T	uc001gzw.2	+	14	3157	c.2273C>T	c.(2272-2274)CCC>CTC	p.P758L	ATP2B4_uc001gzv.2_Missense_Mutation_p.P758L|ATP2B4_uc009xaq.2_Missense_Mutation_p.P758L	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	758	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CGATCTTCTCCCACTGACAAG	0.552													8	70					0	0	0.000274275	0	0
NUAK2	81788	broad.mit.edu	37	1	205275413	205275413	+	Missense_Mutation	SNP	T	C	C	rs114209340	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:205275413T>C	uc001hce.2	-	5	720	c.593A>G	c.(592-594)AAC>AGC	p.N198S		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	198	Protein kinase.				actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			ATGGTAGAGGTTGGAGAGACC	0.557													11	56					0	0	0.00244969	0	0
SLC26A9	115019	broad.mit.edu	37	1	205896708	205896708	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:205896708T>C	uc001hdq.2	-	10	1241	c.1127A>G	c.(1126-1128)AAC>AGC	p.N376S	SLC26A9_uc001hdo.2_Missense_Mutation_p.N44S|SLC26A9_uc001hdp.2_Missense_Mutation_p.N376S	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	376						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GCCAAAGAAGTTGCTGCAGCC	0.547													9	54					0	0	0.000673444	0	0
SLC26A9	115019	broad.mit.edu	37	1	205897158	205897158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:205897158G>A	uc001hdq.2	-	9	1087	c.973C>T	c.(973-975)CCT>TCT	p.P325S	SLC26A9_uc001hdo.2_5'UTR|SLC26A9_uc001hdp.2_Missense_Mutation_p.P325S	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	325						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GAGACCACAGGCGACACCGGG	0.622													6	21					0	0	0.00116845	0	0
SLC26A9	115019	broad.mit.edu	37	1	205904914	205904914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:205904914C>T	uc001hdq.2	-	2	149	c.35G>A	c.(34-36)AGA>AAA	p.R12K	SLC26A9_uc001hdp.2_Missense_Mutation_p.R12K	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	12						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GTATGCGGCTCTGTCTACCAC	0.557													11	41					0	0	0.00136819	0	0
AVPR1B	553	broad.mit.edu	37	1	206224443	206224445	+	Missense_Mutation	TNP	GGA	ATT	ATT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:206224443_206224445GGA>ATT	uc001hds.2	+	1	161_163	c.3_5GGA>ATT	c.(1-6)ATGGAT>ATATTT	p.1_2MD>IF		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	1_2	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	CCTTGCTCATGGATTCTGGGCCT	0.601													42	111					0	0	6.4e-05	0	0
C1orf186	440712	broad.mit.edu	37	1	206239573	206239573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:206239573C>T	uc001hdt.1	-	6	964	c.325G>A	c.(325-327)GAG>AAG	p.E109K		NM_001007544	NP_001007545	Q6ZWK4	CA186_HUMAN	hypothetical protein LOC440712	109						integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.0754)			TCCACATCCTCTGTGGCCTTA	0.453													4	22					0	0	0.000602214	0	0
RASSF5	83593	broad.mit.edu	37	1	206757851	206757851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:206757851G>A	uc001hed.2	+	4	880	c.823G>A	c.(823-825)GAC>AAC	p.D275N	RASSF5_uc001hec.1_Missense_Mutation_p.D275N|RASSF5_uc001hee.2_Missense_Mutation_p.D275N|RASSF5_uc001hef.2_Missense_Mutation_p.D122N|RASSF5_uc001heg.1_Missense_Mutation_p.D48N	NM_182663	NP_872604	Q8WWW0	RASF5_HUMAN	Ras association (RalGDS/AF-6) domain family 5	275	Ras-associating.				apoptosis|intracellular signal transduction	cytoplasm|microtubule	metal ion binding|protein binding			ovary(1)	1	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			GGCTACCACGGACAAGCGGAC	0.597													25	48					0	0	0.001512	0	0
PIGR	5284	broad.mit.edu	37	1	207110677	207110677	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:207110677G>A	uc001hez.2	-	4	992	c.808C>T	c.(808-810)CTG>TTG	p.L270L	PIGR_uc009xbz.2_Silent_p.L270L	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	270	Ig-like V-type 3.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TGTCGGCACAGAAATTTGGCC	0.602													5	31					0	0	0.000602214	0	0
FCAMR	83953	broad.mit.edu	37	1	207131974	207131974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:207131974C>T	uc001hfa.3	-	8	2121	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K	FCAMR_uc001hfb.2_3'UTR|FCAMR_uc009xca.1_3'UTR|FCAMR_uc001hfc.2_Missense_Mutation_p.E516K	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	496	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						GGGTTCACTTCCAGAAAATGT	0.537													11	61					0	0	0.00185496	0	0
PFKFB2	5208	broad.mit.edu	37	1	207235357	207235357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:207235357C>T	uc001hfg.2	+	3	254	c.145C>T	c.(145-147)CGG>TGG	p.R49W	PFKFB2_uc010psc.1_5'UTR|PFKFB2_uc001hfh.2_Missense_Mutation_p.R49W|PFKFB2_uc009xcc.2_Missense_Mutation_p.R7W|PFKFB2_uc010psd.1_5'Flank	NM_006212	NP_006203	O60825	F262_HUMAN	6-phosphofructo-2-kinase/fructose-2,	49	ATP (Potential).|6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			ovary(1)	1	Prostate(682;0.19)					TTTGCCAGCCCGGGGTAAAAC	0.458													11	47					0	0	0.00136819	0	0
CR1	1378	broad.mit.edu	37	1	207785290	207785290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:207785290C>T	uc001hfy.2	+	31	5269	c.5129C>T	c.(5128-5130)TCC>TTC	p.S1710F	CR1_uc001hfx.2_Missense_Mutation_p.S2160F	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1710	Extracellular (Potential).|Sushi 27.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CTAGTGAAATCCTGTGATGAC	0.478													31	130					0	0	0.0024448	0	0
PLXNA2	5362	broad.mit.edu	37	1	208217962	208217962	+	Silent	SNP	G	A	A	rs139061737		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:208217962G>A	uc001hgz.2	-	20	4523	c.3765C>T	c.(3763-3765)ATC>ATT	p.I1255I		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1255	Helical; (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		CAATGAGGACGATGATGACGA	0.582													7	44					0	0	0.00307968	0	0
LOC642587	642587	broad.mit.edu	37	1	209602699	209602699	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:209602699C>T	uc009xcn.2	+	2	440	c.57C>T	c.(55-57)TCC>TCT	p.S19S	LOC642587_uc010psk.1_5'Flank|MIR205_hsa-mir-205|MI0000285_5'Flank	NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		CCCACCTTTCCTCAGGAGTCA	0.363													5	21					0	0	0.00307968	0	0
LAMB3	3914	broad.mit.edu	37	1	209803983	209803983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:209803983C>T	uc001hhg.2	-	8	1310	c.920G>A	c.(919-921)GGC>GAC	p.G307D	LAMB3_uc009xco.2_Missense_Mutation_p.G307D|LAMB3_uc001hhh.2_Missense_Mutation_p.G307D|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Missense_Mutation_p.G243D	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	307	Laminin EGF-like 1.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GGCGTCCTGGCCCTCCGCCGG	0.607													5	16					0	0	0.000602214	0	0
KCNH1	3756	broad.mit.edu	37	1	211093130	211093130	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:211093130C>T	uc001hib.2	-	7	1484	c.1314G>A	c.(1312-1314)GGG>GGA	p.G438G	KCNH1_uc001hic.2_Silent_p.G411G	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	438	Extracellular (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CTTCCCACTTCCCTGAGCCAG	0.517													6	38					0	0	0.00116845	0	0
INTS7	25896	broad.mit.edu	37	1	212190337	212190337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:212190337G>A	uc001hiw.1	-	4	505	c.400C>T	c.(400-402)CCT>TCT	p.P134S	INTS7_uc009xdb.1_Missense_Mutation_p.P134S|INTS7_uc001hix.1_Missense_Mutation_p.P10S|INTS7_uc001hiy.1_Missense_Mutation_p.P134S|INTS7_uc010pta.1_Missense_Mutation_p.P85S	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	134					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		TTCCTCTCAGGAATTATTGAT	0.408													23	132					0	0	0.00127121	0	0
RPS6KC1	26750	broad.mit.edu	37	1	213414579	213414579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:213414579C>T	uc010ptr.1	+	11	1919	c.1760C>T	c.(1759-1761)TCA>TTA	p.S587L	RPS6KC1_uc001hkd.2_Missense_Mutation_p.S575L|RPS6KC1_uc010pts.1_Missense_Mutation_p.S375L|RPS6KC1_uc010ptt.1_Missense_Mutation_p.S375L|RPS6KC1_uc010ptu.1_Missense_Mutation_p.S406L|RPS6KC1_uc010ptv.1_Missense_Mutation_p.S122L|RPS6KC1_uc001hke.2_Missense_Mutation_p.S406L	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	587					cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		CCAAGAACATCAGATTCCCTC	0.473													5	12					0	0	0.000602214	0	0
PROX1	5629	broad.mit.edu	37	1	214170305	214170305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:214170305C>T	uc001hkh.2	+	2	699	c.427C>T	c.(427-429)CCT>TCT	p.P143S	PROX1_uc001hkg.1_Missense_Mutation_p.P143S	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	143					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		GTGTCTTTCCCCTTTTGGCAG	0.507													18	86					0	0	0.00188189	0	0
PROX1	5629	broad.mit.edu	37	1	214170452	214170452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:214170452G>A	uc001hkh.2	+	2	846	c.574G>A	c.(574-576)GAG>AAG	p.E192K	PROX1_uc001hkg.1_Missense_Mutation_p.E192K	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	192					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		AAATGAAAGAGAGATGGCCCC	0.517													11	37					0	0	0.000978159	0	0
PTPN14	5784	broad.mit.edu	37	1	214567116	214567116	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:214567116T>C	uc001hkk.1	-	10	1122	c.851A>G	c.(850-852)GAT>GGT	p.D284G	PTPN14_uc010pty.1_Missense_Mutation_p.D185G	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	284	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		ATTTTCGATATCATCCTTGGA	0.348													17	79					0	0	0.000958276	0	0
USH2A	7399	broad.mit.edu	37	1	215853563	215853563	+	Silent	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:215853563T>A	uc001hku.1	-	62	12609	c.12222A>T	c.(12220-12222)GTA>GTT	p.V4074V		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4074	Fibronectin type-III 26.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTTTCTGTTCTACTATAAAGT	0.418										HNSCC(13;0.011)			8	58					0	0	0.00307968	0	0
USH2A	7399	broad.mit.edu	37	1	215916657	215916657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:215916657G>A	uc001hku.1	-	59	11797	c.11410C>T	c.(11410-11412)CCT>TCT	p.P3804S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3804	Fibronectin type-III 23.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TACTCCACAGGAATTTCGGGG	0.333										HNSCC(13;0.011)			8	76					0	0	0.000673444	0	0
USH2A	7399	broad.mit.edu	37	1	215931972	215931972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:215931972C>T	uc001hku.1	-	58	11741	c.11354G>A	c.(11353-11355)GGG>GAG	p.G3785E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3785	Fibronectin type-III 23.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGAATAAGGCCCAATTACTGT	0.338										HNSCC(13;0.011)			8	62					0	0	0.00307968	0	0
USH2A	7399	broad.mit.edu	37	1	216373131	216373131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:216373131C>T	uc001hku.1	-	17	4036	c.3649G>A	c.(3649-3651)GAT>AAT	p.D1217N	USH2A_uc001hkv.2_Missense_Mutation_p.D1217N	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1217	Extracellular (Potential).|Fibronectin type-III 2.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACAGAAAAATCGTACTTGGCA	0.517										HNSCC(13;0.011)			8	24					0	0	0.000274275	0	0
USH2A	7399	broad.mit.edu	37	1	216595568	216595568	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:216595568G>A	uc001hku.1	-	2	498	c.111C>T	c.(109-111)TTC>TTT	p.F37F	USH2A_uc001hkv.2_Silent_p.F37F	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	37	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CCAGCCTTGGGAAAAGACCTC	0.463										HNSCC(13;0.011)			7	33					0	0	0.00198382	0	0
ESRRG	2104	broad.mit.edu	37	1	216850657	216850657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:216850657C>T	uc001hkw.1	-	2	399	c.233G>A	c.(232-234)GGA>GAA	p.G78E	ESRRG_uc001hky.1_Missense_Mutation_p.G55E|ESRRG_uc009xdp.1_Missense_Mutation_p.G55E|ESRRG_uc001hkz.1_Missense_Mutation_p.G55E|ESRRG_uc010puc.1_Missense_Mutation_p.G55E|ESRRG_uc001hla.1_Missense_Mutation_p.G55E|ESRRG_uc001hlb.1_Missense_Mutation_p.G55E|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Missense_Mutation_p.G55E|ESRRG_uc001hld.1_Missense_Mutation_p.G55E|ESRRG_uc001hkx.1_Missense_Mutation_p.G83E|ESRRG_uc009xdo.1_Missense_Mutation_p.G55E|ESRRG_uc001hle.1_Missense_Mutation_p.G55E	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	78					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	CGAGTCAAGTCCGTTCTGATG	0.562													9	23					0	0	0.000274275	0	0
IARS2	55699	broad.mit.edu	37	1	220315224	220315224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:220315224C>T	uc001hmc.2	+	20	2598	c.2494C>T	c.(2494-2496)CGT>TGT	p.R832C	IARS2_uc001hmd.2_Missense_Mutation_p.R168C	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	832					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TGTAATAGTTCGTTCTTTTGC	0.378													32	111					0	0	0.00327116	0	0
DUSP10	11221	broad.mit.edu	37	1	221879692	221879692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:221879692G>A	uc001hmy.1	-	3	1110	c.928C>T	c.(928-930)CCC>TCC	p.P310S	DUSP10_uc001hmx.1_5'UTR|DUSP10_uc001hmz.1_5'UTR	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	310					inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		GTGGGGATGGGCTGAGGTAGC	0.607													10	72					0	0	0.00185496	0	0
HHIPL2	79802	broad.mit.edu	37	1	222696219	222696219	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:222696219C>T	uc001hnh.1	-	9	1957	c.1899G>A	c.(1897-1899)TTG>TTA	p.L633L		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	633					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TTAGCAAGTCCAAGACTGTCT	0.383													26	145					0	0	0.00106085	0	0
MIA3	375056	broad.mit.edu	37	1	222802528	222802528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:222802528C>T	uc001hnl.2	+	4	1975	c.1966C>T	c.(1966-1968)CCC>TCC	p.P656S	MIA3_uc009xea.1_Missense_Mutation_p.P492S	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	656	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AAGAAATCTTCCCTGGCAACA	0.463													34	200					0	0	0.00283554	0	0
AIDA	64853	broad.mit.edu	37	1	222860275	222860275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:222860275G>A	uc001hnn.2	-	6	662	c.457C>T	c.(457-459)CCC>TCC	p.P153S	AIDA_uc001hno.2_RNA|AIDA_uc010pus.1_Missense_Mutation_p.P129S	NM_022831	NP_073742	Q96BJ3	AIDA_HUMAN	axin interactor, dorsalization associated	153					dorsal/ventral pattern formation|negative regulation of JNK cascade|negative regulation of JUN kinase activity|regulation of protein homodimerization activity						0						TACCTACCGGGAACTCTAGCA	0.413													33	138					0	0	0.00111076	0	0
FAM177B	400823	broad.mit.edu	37	1	222919965	222919965	+	Silent	SNP	C	T	T	rs140872706	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:222919965C>T	uc001hnt.2	+	3	344	c.78C>T	c.(76-78)ATC>ATT	p.I26I	uc001hnr.1_Intron|FAM177B_uc009xeb.2_RNA	NM_207468	NP_997351	A6PVY3	F177B_HUMAN	hypothetical protein LOC400823	26										ovary(1)	1						AAAGGATTATCCATTTTGTTG	0.323													10	35					0	0	0.000978159	0	0
TLR5	7100	broad.mit.edu	37	1	223285326	223285326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:223285326C>T	uc001hnv.1	-	4	1494	c.1048G>A	c.(1048-1050)GAA>AAA	p.E350K	TLR5_uc001hnw.1_Missense_Mutation_p.E350K	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	350	Extracellular (Potential).|LRR 7.				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		CTGTAAAGTTCCCCCAGAAGG	0.363													24	86					0	0	0.00332997	0	0
TMEM63A	9725	broad.mit.edu	37	1	226058783	226058783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:226058783G>A	uc001hpm.1	-	6	614	c.364C>T	c.(364-366)CGT>TGT	p.R122C	TMEM63A_uc010pvi.1_Missense_Mutation_p.R122C	NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	122						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					CACTGCAGACGGAAGATGGCA	0.537													6	14					0	0	0.00198382	0	0
PARP1	142	broad.mit.edu	37	1	226562050	226562050	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:226562050T>G	uc001hqd.3	-	14	2118	c.1947A>C	c.(1945-1947)GAA>GAC	p.E649D		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	649					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TCACTGCCTCTTCATCCTTCA	0.478								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					10	54					0	0	0.000673444	0	0
ZNF678	339500	broad.mit.edu	37	1	227843398	227843398	+	Missense_Mutation	SNP	C	T	T	rs116247928	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:227843398C>T	uc001hqw.1	+	4	1792	c.1447C>T	c.(1447-1449)CAT>TAT	p.H483Y	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	538					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				TAAAAGAATTCATACTGGAGA	0.358													6	25					0	0	0.00116845	0	0
ARF1	375	broad.mit.edu	37	1	228284827	228284827	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:228284827C>T	uc001hrr.2	+	2	240	c.12C>T	c.(10-12)ATC>ATT	p.I4I	ARF1_uc001hrs.2_Silent_p.I4I|ARF1_uc001hrt.2_Silent_p.I4I|ARF1_uc009xev.2_Intron|ARF1_uc001hru.2_Silent_p.I4I|ARF1_uc001hrv.2_Silent_p.I4I|ARF1_uc001hrw.2_Silent_p.I4I	NM_001024226	NP_001019397	P84077	ARF1_HUMAN	ADP-ribosylation factor 1	4					cellular copper ion homeostasis|COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|protein transport|regulation of defense response to virus by virus|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction|viral reproduction	cytosol|Golgi membrane|perinuclear region of cytoplasm|plasma membrane	GTP binding|GTPase activity|protein binding|receptor signaling protein activity				0		Prostate(94;0.0405)				TGGGGAACATCTTCGCCAACC	0.547													11	60					0	0	0.00185496	0	0
OBSCN	84033	broad.mit.edu	37	1	228434376	228434376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:228434376C>T	uc009xez.1	+	13	3949	c.3905C>T	c.(3904-3906)TCG>TTG	p.S1302L	OBSCN_uc001hsn.2_Missense_Mutation_p.S1302L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1302	Poly-Ser.|Ig-like 13.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGCTCCAGTTCGAAAGTGCGC	0.647													12	63					0	0	0.00185496	0	0
OBSCN	84033	broad.mit.edu	37	1	228475408	228475408	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:228475408G>T	uc009xez.1	+	36	9602	c.9558G>T	c.(9556-9558)CGG>CGT	p.R3186R	OBSCN_uc001hsn.2_Silent_p.R3186R|OBSCN_uc001hsq.1_Silent_p.R442R	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3186	Ig-like 32.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGCCAGTGCGGTTCCAGGAGG	0.647													10	22					4.36969e-10	1.22459e-09	0.00185496	1	0
AGT	183	broad.mit.edu	37	1	230846251	230846251	+	Missense_Mutation	SNP	G	A	A	rs147355405		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:230846251G>A	uc001hty.3	-	2	854	c.346C>T	c.(346-348)CGT>TGT	p.R116C	AGT_uc009xfe.2_Missense_Mutation_p.R116C|AGT_uc009xff.2_Missense_Mutation_p.R88C	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	116					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	CCATATATACGGAAGCCCAAG	0.592													10	40					0	0	0.000673444	0	0
KIAA1383	54627	broad.mit.edu	37	1	232940797	232940797	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:232940797T>A	uc001hvh.2	+	1	160	c.28T>A	c.(28-30)TGG>AGG	p.W10R		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	Error:Variant_position_missing_in_Q9P2G4_after_alignment										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				GTTAACTAACTGGCTCTGTTT	0.473													16	106					0	0	0.00121646	0	0
PCNXL2	80003	broad.mit.edu	37	1	233136215	233136215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:233136215C>T	uc001hvl.2	-	30	5399	c.5164G>A	c.(5164-5166)GAG>AAG	p.E1722K	PCNXL2_uc001hvk.1_Missense_Mutation_p.E374K|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1722						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ACCTTCTTCTCGAAGGACTGG	0.622													6	9					0	0	0.00116845	0	0
PCNXL2	80003	broad.mit.edu	37	1	233270791	233270791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:233270791C>T	uc001hvl.2	-	21	4040	c.3805G>A	c.(3805-3807)GAT>AAT	p.D1269N	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1269	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ATGAAGAAATCCAGTAAGAAG	0.343													23	138					0	0	0.00106085	0	0
KIAA1804	84451	broad.mit.edu	37	1	233489594	233489594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:233489594C>T	uc001hvt.3	+	3	1289	c.1028C>T	c.(1027-1029)CCC>CTC	p.P343L	KIAA1804_uc001hvs.1_Missense_Mutation_p.P343L	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	343	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GGAGAAGTCCCCTATCGGGGC	0.517													10	24					0	0	0.000978159	0	0
KIAA1804	84451	broad.mit.edu	37	1	233512202	233512202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:233512202G>A	uc001hvt.3	+	8	2114	c.1853G>A	c.(1852-1854)AGT>AAT	p.S618N	KIAA1804_uc001hvu.3_Missense_Mutation_p.S64N	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	618					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GATGGCAACAGTCCTTGGTCA	0.403													8	48					0	0	0.000442599	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514709	233514709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:233514709G>A	uc001hvt.3	+	9	2218	c.1957G>A	c.(1957-1959)GGA>AGA	p.G653R	KIAA1804_uc001hvu.3_Missense_Mutation_p.G99R	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	653					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TTCCCCTGATGGATTAGAACA	0.378													11	72					0	0	0.000978159	0	0
KCNK1	3775	broad.mit.edu	37	1	233807123	233807123	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:233807123G>A	uc010pxo.1	+	3	1026	c.858G>A	c.(856-858)AAG>AAA	p.K286K	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	286	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	AGAAGGACAAGGACGAGGATC	0.458													8	39					0	0	0.000274275	0	0
TARBP1	6894	broad.mit.edu	37	1	234569302	234569302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:234569302G>A	uc001hwd.2	-	14	2248	c.2248C>T	c.(2248-2250)CGT>TGT	p.R750C		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	750					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			AAATGGCAACGATCCAGATCT	0.393													6	55					0	0	0.00198382	0	0
LYST	1130	broad.mit.edu	37	1	235973692	235973692	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:235973692T>G	uc001hxj.2	-	5	601	c.426A>C	c.(424-426)AAA>AAC	p.K142N	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.K142N	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	142					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GTCGTCTGCTTTTTCGAAAAA	0.388									Chediak-Higashi_syndrome				19	92					0	0	0.00188189	0	0
HEATR1	55127	broad.mit.edu	37	1	236721799	236721799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:236721799G>A	uc001hyd.1	-	36	5067	c.4942C>T	c.(4942-4944)CTT>TTT	p.L1648F	HEATR1_uc009xgh.1_Missense_Mutation_p.L810F	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	1648					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			ATGGCCAAAAGGTCTGGAACC	0.408													16	37					0	0	0.000566183	0	0
ACTN2	88	broad.mit.edu	37	1	236908053	236908053	+	Silent	SNP	C	T	T	rs34827377	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:236908053C>T	uc001hyf.2	+	12	1587	c.1383C>T	c.(1381-1383)ATC>ATT	p.I461I	ACTN2_uc001hyg.2_Silent_p.I253I|ACTN2_uc009xgi.1_Silent_p.I461I|ACTN2_uc010pxu.1_Silent_p.I150I|ACTN2_uc001hyh.2_Silent_p.I149I	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	461	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TGGAGCAGATCGCAGCCATCG	0.652													5	9					0	0	0.00307968	0	0
ACTN2	88	broad.mit.edu	37	1	236910979	236910979	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:236910979T>C	uc001hyf.2	+	13	1623	c.1419T>C	c.(1417-1419)TAT>TAC	p.Y473Y	ACTN2_uc001hyg.2_Silent_p.Y265Y|ACTN2_uc009xgi.1_Silent_p.Y473Y|ACTN2_uc010pxu.1_Silent_p.Y162Y|ACTN2_uc001hyh.2_Silent_p.Y161Y	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	473	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			AACTGGACTATCACGACGCTG	0.408													3	50					0	0	6.4e-05	0	0
RYR2	6262	broad.mit.edu	37	1	237872321	237872321	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:237872321C>T	uc001hyl.1	+	69	10185	c.10065C>T	c.(10063-10065)ATC>ATT	p.I3355I	RYR2_uc010pxz.1_Silent_p.I310I	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3355					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AACTCCTCATCCTAGATGAGT	0.463													6	23					0	0	0.00116845	0	0
RYR2	6262	broad.mit.edu	37	1	237972297	237972297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:237972297G>A	uc001hyl.1	+	100	14515	c.14395G>A	c.(14395-14397)GGT>AGT	p.G4799S	RYR2_uc010pyb.1_Missense_Mutation_p.G232S	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4799					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAGTGAAGATGGTGATACACC	0.363													53	231					0	0	0.00361006	0	0
RYR2	6262	broad.mit.edu	37	1	237982470	237982470	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:237982470C>T	uc001hyl.1	+	101	14688	c.14568C>T	c.(14566-14568)GTC>GTT	p.V4856V	RYR2_uc010pyb.1_Silent_p.V289V	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4856	Helical; Name=M10; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTGTTATTGTCATTCTCTTGG	0.408													17	115					0	0	0.00074312	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090427	238090427	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:238090427G>A	uc010pyc.1	+	12		c.1933G>A				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						GGCCCTGGAGGAGCACCCAGT	0.562													5	7					0	0	0.000602214	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090516	238090516	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:238090516C>T	uc010pyc.1	+	12		c.2022C>T				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						CCTTCAACTCCCCGGCCATGT	0.602													4	20					0	0	0.000602214	0	0
CHRM3	1131	broad.mit.edu	37	1	240071559	240071559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:240071559G>A	uc001hyp.2	+	5	1587	c.808G>A	c.(808-810)GCC>ACC	p.A270T		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	270	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TGGCCTGCAAGCCTCTGGGAC	0.473													11	36					0	0	0.000673444	0	0
RGS7	6000	broad.mit.edu	37	1	240969462	240969462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:240969462C>T	uc001hyv.2	-	15	1577	c.1247G>A	c.(1246-1248)CGA>CAA	p.R416Q	RGS7_uc010pyh.1_Missense_Mutation_p.R390Q|RGS7_uc010pyj.1_Missense_Mutation_p.R332Q|RGS7_uc001hyu.2_Missense_Mutation_p.R416Q|RGS7_uc009xgn.1_Missense_Mutation_p.R363Q|RGS7_uc001hyw.2_Missense_Mutation_p.R416Q|RGS7_uc001hyt.2_Missense_Mutation_p.R248Q	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	416	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			AAATGTGTATCGTCCAGGTTC	0.453													7	52					0	0	0.000442599	0	0
FH	2271	broad.mit.edu	37	1	241669301	241669301	+	Splice_Site	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:241669301A>C	uc001hyx.2	-	6	936	c.904_splice	c.e6+1	p.G302_splice		NM_000143	NP_000134	P07954	FUMH_HUMAN	fumarate hydratase precursor						fumarate metabolic process|tricarboxylic acid cycle	cell junction|mitochondrial matrix|tricarboxylic acid cycle enzyme complex	fumarate hydratase activity			lung(3)|ovary(1)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;2.37e-314)|all_epithelial(177;5.17e-286)|Breast(1374;1.06e-10)|Acute lymphoblastic leukemia(190;4.93e-10)|all_neural(198;0.00118)	OV - Ovarian serous cystadenocarcinoma(106;0.0214)	Colorectal(1306;2.33e-53)|COAD - Colon adenocarcinoma(196;1.05e-44)|KIRC - Kidney renal clear cell carcinoma(1967;0.000109)		GTGATCACTAACCTGTAAGTG	0.388			Mis|N|F			lieomyomatosis|renal			Hereditary_Leiomyomatosis_and_Renal_Cell_Cancer				7	63					0	0	0.000673444	0	0
C1orf101	257044	broad.mit.edu	37	1	244724443	244724443	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:244724443C>T	uc001iam.2	+	10	1562	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F	C1orf101_uc001iak.1_Silent_p.F55F|C1orf101_uc001ial.2_Silent_p.F501F|C1orf101_uc010pym.1_Silent_p.F350F|C1orf101_uc010pyn.1_Silent_p.F434F	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	501	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			ATGAAGTTTTCATAGGTAAGG	0.343													13	68					0	0	0.00136819	0	0
C1orf101	257044	broad.mit.edu	37	1	244756721	244756721	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:244756721G>A	uc001iam.2	+	16	2273	c.2214G>A	c.(2212-2214)TCG>TCA	p.S738S	C1orf101_uc001iak.1_Silent_p.S292S|C1orf101_uc001ial.2_Silent_p.S738S|C1orf101_uc010pym.1_Silent_p.S587S|C1orf101_uc010pyn.1_Silent_p.S671S	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	738	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			ATCAGCCATCGAAAAACTTGG	0.323													22	132					0	0	0.00127121	0	0
KIF26B	55083	broad.mit.edu	37	1	245809553	245809553	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:245809553C>T	uc001ibf.1	+	10	2669	c.2229C>T	c.(2227-2229)CTC>CTT	p.L743L	KIF26B_uc010pyq.1_Silent_p.L743L|KIF26B_uc001ibg.1_Silent_p.L361L|KIF26B_uc001ibh.1_5'UTR	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	743					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			TCCTGGCTCTCGTCAATGGCA	0.498													5	19					0	0	0.00116845	0	0
SCCPDH	51097	broad.mit.edu	37	1	246907403	246907403	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:246907403C>T	uc001ibr.2	+	5	887	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_016002	NP_057086	Q8NBX0	SCPDH_HUMAN	saccharopine dehydrogenase (putative)	180						midbody	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity			ovary(1)	1	all_cancers(71;6.8e-05)|all_epithelial(71;7.93e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0545)|Lung NSC(105;0.0618)	all_cancers(173;0.0343)	OV - Ovarian serous cystadenocarcinoma(106;0.00323)	GBM - Glioblastoma multiforme(49;0.0896)		TGGAAAGTTTCCTGACTATAC	0.294													30	180					0	0	0.00327116	0	0
SCCPDH	51097	broad.mit.edu	37	1	246930509	246930509	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:246930509C>T	uc001ibr.2	+	12	1544	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F		NM_016002	NP_057086	Q8NBX0	SCPDH_HUMAN	saccharopine dehydrogenase (putative)	399						midbody	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity			ovary(1)	1	all_cancers(71;6.8e-05)|all_epithelial(71;7.93e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0545)|Lung NSC(105;0.0618)	all_cancers(173;0.0343)	OV - Ovarian serous cystadenocarcinoma(106;0.00323)	GBM - Glioblastoma multiforme(49;0.0896)		GCGGGGTCTTCACACCTGGAG	0.428													9	21					0	0	0.000442599	0	0
NLRP3	114548	broad.mit.edu	37	1	247597441	247597441	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:247597441C>T	uc001icr.2	+	7	2502	c.2364C>T	c.(2362-2364)TTC>TTT	p.F788F	NLRP3_uc001ics.2_Silent_p.F788F|NLRP3_uc001icu.2_Silent_p.F788F|NLRP3_uc001icw.2_Silent_p.F731F|NLRP3_uc001icv.2_Silent_p.F731F|NLRP3_uc010pyw.1_Intron	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	788	LRR 2.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AGTGCTGCTTCGACATCTCCT	0.562													17	75					0	0	0.00074312	0	0
OR2W5	441932	broad.mit.edu	37	1	247655249	247655249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:247655249C>T	uc001icz.1	+	1	820	c.820C>T	c.(820-822)CCT>TCT	p.P274S		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	274					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			AGGGGAAGTTCCTGACTCTCT	0.512													7	40					0	0	0.000274275	0	0
OR2W5	441932	broad.mit.edu	37	1	247655354	247655354	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:247655354G>C	uc001icz.1	+	1	925	c.925G>C	c.(925-927)GAA>CAA	p.E309Q		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	309					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TGGGGTGGGAGAAAGGGGCTG	0.498													13	33					0	0	0.00185496	0	0
OR2C3	81472	broad.mit.edu	37	1	247695139	247695139	+	Silent	SNP	G	A	A	rs149975458		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:247695139G>A	uc009xgy.2	-	2	1037	c.675C>T	c.(673-675)GCC>GCT	p.A225A	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TCTTCAACACGGCCCGGGCAA	0.537													8	23					0	0	0.000442599	0	0
OR2G2	81470	broad.mit.edu	37	1	247752107	247752107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:247752107C>T	uc010pyy.1	+	1	446	c.446C>T	c.(445-447)TCT>TTT	p.S149F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GCCTTGGCATCTATGGCATGG	0.557													14	49					0	0	0.000422831	0	0
OR1C1	26188	broad.mit.edu	37	1	247920929	247920929	+	Silent	SNP	G	A	A	rs149265525		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:247920929G>A	uc010pza.1	-	1	780	c.780C>T	c.(778-780)TTC>TTT	p.F260F		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F260F(1)		skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			ATGAAGGGCTGAAATAGACGG	0.517													6	22					0	0	0.00116845	0	0
OR2W3	343171	broad.mit.edu	37	1	248059641	248059641	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248059641C>T	uc001idp.1	+	3	1022	c.753C>T	c.(751-753)TTC>TTT	p.F251F	OR2W3_uc010pzb.1_Silent_p.F251F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TCTCCCTTTTCTATGGAAACA	0.527													20	51					0	0	0.00395357	0	0
OR2L8	391190	broad.mit.edu	37	1	248112298	248112298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248112298C>T	uc001idt.1	+	1	139	c.139C>T	c.(139-141)CTC>TTC	p.L47F	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CATGATTCTTCTCATCTTCTT	0.413													24	122					0	0	0.000720815	0	0
OR2L8	391190	broad.mit.edu	37	1	248112406	248112406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248112406G>A	uc001idt.1	+	1	247	c.247G>A	c.(247-249)GAT>AAT	p.D83N	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			GATGGCATCTGATTTTCTGCA	0.453													27	102					0	0	0.00106085	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129444	248129444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248129444C>T	uc010pzd.1	+	1	811	c.811C>T	c.(811-813)CTC>TTC	p.L271F	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	271	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TGCAACCACTCTCTTTACCTA	0.478													6	21					0	0	0.000274275	0	0
OR2L1P	26247	broad.mit.edu	37	1	248153845	248153845	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248153845C>T	uc001idv.1	+	1	277	c.33C>T	c.(31-33)TCC>TCT	p.S11S	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						AGTCTATCTCCTTCACTGGGT	0.413													27	51					0	0	0.00127121	0	0
OR2L13	284521	broad.mit.edu	37	1	248263174	248263174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248263174C>T	uc001ids.2	+	3	834	c.497C>T	c.(496-498)CCC>CTC	p.P166L		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CTTCATATTCCCTACTGCAGG	0.458													20	84					0	0	0.000958276	0	0
OR2M5	127059	broad.mit.edu	37	1	248308485	248308485	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248308485C>T	uc010pze.1	+	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			ACTCTGACTTCATCCTCCTGG	0.443													31	64					0	0	0.000814825	0	0
OR2M2	391194	broad.mit.edu	37	1	248343831	248343831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248343831C>T	uc010pzf.1	+	1	544	c.544C>T	c.(544-546)CCT>TCT	p.P182S		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTGTGAATTCCCTTCCCTACT	0.418													18	101					0	0	0.00152264	0	0
OR2T33	391195	broad.mit.edu	37	1	248436382	248436382	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248436382C>T	uc010pzi.1	-	1	735	c.735G>A	c.(733-735)GTG>GTA	p.V245V		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGAGTCCCACCACAGCCACAT	0.498													6	46					0	0	0.00198382	0	0
OR2T12	127064	broad.mit.edu	37	1	248458150	248458150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248458150G>A	uc010pzj.1	-	1	731	c.731C>T	c.(730-732)GCT>GTT	p.A244V		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			TCCCACCACAGCCACATGTGA	0.507													15	48					0	0	0.00316338	0	0
OR2T12	127064	broad.mit.edu	37	1	248458248	248458248	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248458248G>A	uc010pzj.1	-	1	633	c.633C>T	c.(631-633)CTC>CTT	p.L211L		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			AGGACAGGATGAGGGAAAAGG	0.547													13	42					0	0	0.00244969	0	0
OR14C36	127066	broad.mit.edu	37	1	248512880	248512880	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248512880G>A	uc010pzl.1	+	1	804	c.804G>A	c.(802-804)CAG>CAA	p.Q268Q		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CAGCCACCCAGGATCTGATCC	0.458													19	48					0	0	0.00121646	0	0
OR2G6	391211	broad.mit.edu	37	1	248685082	248685082	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248685082C>T	uc001ien.1	+	1	135	c.135C>T	c.(133-135)CTC>CTT	p.L45L		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACACTGCCCTCATACTAGTAT	0.478													9	45					0	0	0.000274275	0	0
OR2G6	391211	broad.mit.edu	37	1	248685473	248685473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248685473C>T	uc001ien.1	+	1	526	c.526C>T	c.(526-528)CAT>TAT	p.H176Y		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CACACTGGATCATATTTTCTG	0.532													11	32					0	0	0.000978159	0	0
OR14I1	401994	broad.mit.edu	37	1	248845046	248845046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:248845046G>A	uc001ieu.1	-	1	560	c.560C>T	c.(559-561)TCC>TTC	p.S187F		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AACCTCACAGGAAACCAGGGC	0.493													11	22					0	0	0.000673444	0	0
ADARB2	105	broad.mit.edu	37	10	1284256	1284256	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:1284256C>G	uc009xhq.2	-	5	1673	c.1299G>C	c.(1297-1299)GCG>GCC	p.A433A		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	433	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		CCACGACCTCCGCGTGGCAGT	0.692													3	9					0	0	6.4e-05	0	0
AKR1C2	1646	broad.mit.edu	37	10	5043870	5043870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:5043870G>A	uc010qan.1	-	2	267	c.88C>T	c.(88-90)CCT>TCT	p.P30S	AKR1E2_uc001ihl.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C2_uc009xhy.2_Missense_Mutation_p.P30S|AKR1C2_uc001ihs.2_Missense_Mutation_p.P30S|AKR1C2_uc001iht.2_Missense_Mutation_p.P30S|AKR1C2_uc010qao.1_Missense_Mutation_p.P30S	NM_205845	NP_995317	P52895	AK1C2_HUMAN	aldo-keto reductase family 1, member C2	30					digestion|prostaglandin metabolic process|steroid metabolic process	cytoplasm	androsterone dehydrogenase (A-specific) activity|bile acid binding|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0					NADH(DB00157)|Ursodeoxycholic acid(DB01586)	TTACTTTTAGGAACCTGGGGG	0.443													12	44					0	0	0.00244969	0	0
FBXO18	84893	broad.mit.edu	37	10	5963508	5963508	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:5963508C>T	uc001iis.2	+	15	2393	c.2298C>T	c.(2296-2298)TTC>TTT	p.F766F	FBXO18_uc001iir.2_Silent_p.F692F|FBXO18_uc009xig.2_Silent_p.F692F|FBXO18_uc001iit.2_Silent_p.F817F	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	766					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						AAGGGGAATTCCCTTCAAGGA	0.493													12	49					0	0	0.00244969	0	0
IL15RA	3601	broad.mit.edu	37	10	5995107	5995107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:5995107C>T	uc001iiv.2	-	7	837	c.755G>A	c.(754-756)GGG>GAG	p.G252E	IL15RA_uc001iiu.2_Intron|IL15RA_uc010qau.1_Missense_Mutation_p.G219E|IL15RA_uc001iiw.2_Missense_Mutation_p.G216E|IL15RA_uc001iix.2_Missense_Mutation_p.G183E|IL15RA_uc001iiy.2_Missense_Mutation_p.G100E	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	252	Cytoplasmic (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						GCTGCTGGTCCCCCAAGTCAC	0.552													16	42					0	0	0.00188189	0	0
ITIH5	80760	broad.mit.edu	37	10	7679266	7679266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:7679266C>T	uc001ijq.2	-	5	656	c.577G>A	c.(577-579)GAG>AAG	p.E193K	ITIH5_uc001ijr.1_Missense_Mutation_p.E193K	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	193					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CCCGCGCTCTCCAGGATATTC	0.662													11	25					0	0	0.000978159	0	0
ITIH5	80760	broad.mit.edu	37	10	7682777	7682777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:7682777C>T	uc001ijq.2	-	4	420	c.341G>A	c.(340-342)AGA>AAA	p.R114K	ITIH5_uc001ijr.1_Missense_Mutation_p.R114K	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	114	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CTTCTTTTCTCTCTCTGTAAT	0.373													37	67					0	0	0.00321405	0	0
ITIH2	3698	broad.mit.edu	37	10	7750997	7750997	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:7750997C>T	uc001ijs.2	+	4	367	c.205C>T	c.(205-207)CAA>TAA	p.Q69*		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	69	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						AGAGGTTGATCAAGTAACTCT	0.398													14	70					0	0	0.000422831	0	0
ITIH2	3698	broad.mit.edu	37	10	7763649	7763649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:7763649G>A	uc001ijs.2	+	8	938	c.776G>A	c.(775-777)AGA>AAA	p.R259K		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	259					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						GCACAGCAGAGAATATGCCCT	0.572													10	43					0	0	0.000442599	0	0
ITIH2	3698	broad.mit.edu	37	10	7774395	7774395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:7774395G>A	uc001ijs.2	+	14	1904	c.1742G>A	c.(1741-1743)AGG>AAG	p.R581K		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	581					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						GATTTCACCAGGAAACTGTGG	0.488													4	30					0	0	0.000602214	0	0
ATP5C1	509	broad.mit.edu	37	10	7844269	7844269	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:7844269T>G	uc001iju.2	+	7	752	c.674T>G	c.(673-675)GTG>GGG	p.V225G	ATP5C1_uc009xiq.1_Missense_Mutation_p.V225G|ATP5C1_uc010qbc.1_Missense_Mutation_p.V176G|ATP5C1_uc001ijv.2_Missense_Mutation_p.V225G	NM_001001973	NP_001001973	P36542	ATPG_HUMAN	ATP synthase, H+ transporting, mitochondrial F1	225					oxidative phosphorylation|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						GATGCTGACGTGCTGCAAAAT	0.403													6	50					0	0	0.000274275	0	0
TAF3	83860	broad.mit.edu	37	10	8007196	8007196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:8007196C>T	uc010qbd.1	+	3	1723	c.1723C>T	c.(1723-1725)CCC>TCC	p.P575S		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	575	Lys-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						AACAAAGTATCCCTGGAAGGA	0.229													35	49					0	0	0.0024448	0	0
UPF2	26019	broad.mit.edu	37	10	12077174	12077174	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:12077174C>T	uc001ila.2	-	1	723	c.249G>A	c.(247-249)GAG>GAA	p.E83E	UPF2_uc001ilb.2_Silent_p.E83E|UPF2_uc001ilc.2_Silent_p.E83E|UPF2_uc009xiz.1_Silent_p.E83E	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	83	Potential.|Glu/Lys-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				ttgattcttcctCTGCCTTCA	0.308													66	340					0	0	0.00361006	0	0
UCMA	221044	broad.mit.edu	37	10	13264196	13264196	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:13264196C>T	uc001imd.2	-	5	397	c.324G>A	c.(322-324)CAG>CAA	p.Q108Q		NM_145314	NP_660357	Q8WVF2	UCMA_HUMAN	upper zone of growth plate and cartilage matrix	108	Potential.					proteinaceous extracellular matrix					0						TCCTCTCTTCCTGCTCTGGGG	0.622													8	18					0	0	0.00307968	0	0
SEPHS1	22929	broad.mit.edu	37	10	13361209	13361210	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:13361209_13361210CG>AT	uc001imk.2	-	9	1470_1471	c.1111_1112CG>AT	c.(1111-1113)CGG>ATG	p.R371M	SEPHS1_uc001imh.2_Missense_Mutation_p.R295M|SEPHS1_uc010qbs.1_Missense_Mutation_p.R323M|SEPHS1_uc001imi.2_Missense_Mutation_p.R369M|SEPHS1_uc001imj.2_3'UTR|SEPHS1_uc010qbt.1_Missense_Mutation_p.R304M	NM_012247	NP_036379	P49903	SPS1_HUMAN	selenophosphate synthetase 1	371					protein modification process		ATP binding|GTP binding|selenide, water dikinase activity			skin(1)	1						CTCGATGATCCGGGGTTTGTCT	0.48													6	185					0	0	6.4e-05	0	0
DCLRE1C	64421	broad.mit.edu	37	10	14968864	14968864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:14968864G>A	uc001inn.2	-	11	1035	c.950C>T	c.(949-951)TCT>TTT	p.S317F	DCLRE1C_uc010qbx.1_Missense_Mutation_p.S317F|DCLRE1C_uc001inl.2_Missense_Mutation_p.S197F|DCLRE1C_uc009xji.2_Missense_Mutation_p.S202F|DCLRE1C_uc001inm.2_Missense_Mutation_p.S197F|DCLRE1C_uc001ino.2_Missense_Mutation_p.S202F|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Missense_Mutation_p.S197F|DCLRE1C_uc001inq.2_Missense_Mutation_p.S197F|DCLRE1C_uc001inr.2_Missense_Mutation_p.S202F|DCLRE1C_uc009xjj.1_Intron	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	317					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						GGAGTGAAAAGAAAAACAAGC	0.433								Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					11	30					0	0	0.00244969	0	0
FAM171A1	221061	broad.mit.edu	37	10	15325991	15325991	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:15325991C>T	uc001iob.2	-	2	218	c.211G>A	c.(211-213)GAT>AAT	p.D71N		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	71	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GCGACGCCATCAGTCCCCGAG	0.587													7	19					0	0	0.000442599	0	0
ITGA8	8516	broad.mit.edu	37	10	15648354	15648354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:15648354G>A	uc001ioc.1	-	18	1832	c.1832C>T	c.(1831-1833)TCC>TTC	p.S611F	ITGA8_uc010qcb.1_Missense_Mutation_p.S596F	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	611	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TTTAAAGGTGGATTCGTCCAA	0.363													11	21					0	0	0.000673444	0	0
CUBN	8029	broad.mit.edu	37	10	17152951	17152951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:17152951G>A	uc001ioo.2	-	9	1034	c.982C>T	c.(982-984)CCT>TCT	p.P328S		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	328	EGF-like 4; calcium-binding (Potential).				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GAAGACCCAGGTGTATTCACA	0.517													17	38					0	0	0.00074312	0	0
VIM	7431	broad.mit.edu	37	10	17278314	17278314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:17278314C>T	uc001iou.2	+	9	1708	c.1295C>T	c.(1294-1296)CCT>CTT	p.P432L	VIM_uc001iov.1_Intron|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Missense_Mutation_p.P432L|VIM_uc001ioy.1_Missense_Mutation_p.P345L|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Missense_Mutation_p.P390L|VIM_uc001ipc.1_Intron	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	432	Tail.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						GATTCACTCCCTCTGGTTGAT	0.348													39	134					0	0	0.00361006	0	0
MRC1	4360	broad.mit.edu	37	10	17949596	17949596	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:17949596G>A	uc001ipk.2	+	28	4063	c.3960G>A	c.(3958-3960)TGG>TGA	p.W1320*		NM_002438	NP_002429	P22897	MRC1_HUMAN	mannose receptor C type 1 precursor	1320	Extracellular (Potential).|C-type lectin 8.				receptor-mediated endocytosis	endosome membrane|integral to plasma membrane	mannose binding|receptor activity				0						TTGTCAACTGGAACACAGGAG	0.393													11	22					0	0	0.000958276	0	0
SLC39A12	221074	broad.mit.edu	37	10	18250704	18250704	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:18250704G>A	uc001ipo.2	+	3	729	c.456G>A	c.(454-456)CAG>CAA	p.Q152Q	SLC39A12_uc001ipn.2_Silent_p.Q152Q|SLC39A12_uc001ipp.2_Silent_p.Q152Q|SLC39A12_uc010qck.1_Silent_p.Q18Q	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	152	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						GCCTCAGGCAGGATGAAGATT	0.393													14	44					0	0	0.00185496	0	0
CACNB2	783	broad.mit.edu	37	10	18789875	18789875	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:18789875C>T	uc001ipr.2	+	5	651	c.591C>T	c.(589-591)TCC>TCT	p.S197S	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Silent_p.S197S|CACNB2_uc001ipt.2_Silent_p.S197S|CACNB2_uc010qcl.1_RNA|CACNB2_uc001ipu.2_Silent_p.S169S|CACNB2_uc001ipv.2_Silent_p.S169S|CACNB2_uc009xka.1_Silent_p.S169S|CACNB2_uc001ipw.2_Silent_p.S142S|CACNB2_uc001ipx.2_Silent_p.S142S|CACNB2_uc009xkb.1_Silent_p.S143S|CACNB2_uc010qcm.1_Silent_p.S143S|CACNB2_uc001ipz.2_Silent_p.S143S|CACNB2_uc001ipy.2_Silent_p.S143S|CACNB2_uc010qcn.1_Silent_p.S149S|CACNB2_uc010qco.1_Silent_p.S149S|CACNB2_uc001iqa.2_Silent_p.S149S	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	197					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AATTCTACTCCAGGTATGAGA	0.388													5	17					0	0	0.00116845	0	0
NEBL	10529	broad.mit.edu	37	10	21129735	21129735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:21129735C>T	uc001iqi.2	-	13	1668	c.1271G>A	c.(1270-1272)GGA>GAA	p.G424E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	424	Nebulin 12.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						AAGTTCCATTCCTTTCCCTTT	0.333													9	47					0	0	0.000274275	0	0
C10orf113	387638	broad.mit.edu	37	10	21414760	21414760	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:21414760A>G	uc001iqm.2	-	2	450	c.430T>C	c.(430-432)TTT>CTT	p.F144L	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	154										ovary(3)|pancreas(1)	4						ATTTACAAAAAAGTCATTTTC	0.388													9	70					0	0	0.000673444	0	0
C10orf113	387638	broad.mit.edu	37	10	21435296	21435296	+	Missense_Mutation	SNP	C	T	T	rs139819724		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:21435296C>T	uc001iqm.2	-	1	132	c.112G>A	c.(112-114)GAA>AAA	p.E38K	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	48										ovary(3)|pancreas(1)	4						ATGTACATTTCAGCCACACAA	0.433													11	54					0	0	0.00316338	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24896788	24896788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:24896788G>A	uc001isb.2	-	10	2954	c.2467C>T	c.(2467-2469)CCT>TCT	p.P823S	ARHGAP21_uc010qdb.1_RNA|ARHGAP21_uc009xkl.1_Missense_Mutation_p.P823S|ARHGAP21_uc010qdc.1_Missense_Mutation_p.P658S	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	822					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GCAGAGGCAGGGATATGTGCA	0.413													9	39					0	0	0.000442599	0	0
GPR158	57512	broad.mit.edu	37	10	25886792	25886792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:25886792C>T	uc001isj.2	+	11	2297	c.2237C>T	c.(2236-2238)TCG>TTG	p.S746L	GPR158_uc001isk.2_Missense_Mutation_p.S121L	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	746	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AAGCGGTGCTCGAAGAAGGGC	0.502													5	26					0	0	0.000602214	0	0
GPR158	57512	broad.mit.edu	37	10	25886961	25886961	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:25886961C>T	uc001isj.2	+	11	2466	c.2406C>T	c.(2404-2406)TCC>TCT	p.S802S	GPR158_uc001isk.2_Silent_p.S177S	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	802	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CAGGGAAATCCAAGGAGGAGA	0.542													5	7					0	0	0.000602214	0	0
GAD2	2572	broad.mit.edu	37	10	26508016	26508016	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:26508016C>T	uc001isp.2	+	4	834	c.331C>T	c.(331-333)CTG>TTG	p.L111L	GAD2_uc009xkr.2_Silent_p.L111L|GAD2_uc001isq.2_Silent_p.L111L	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	111					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	TTTGGCGTTTCTGCAAGATGT	0.368													9	65					0	0	0.000673444	0	0
ARMC4	55130	broad.mit.edu	37	10	28101452	28101452	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:28101452T>C	uc009xky.2	-	20	3222	c.3124A>G	c.(3124-3126)AGA>GGA	p.R1042G	ARMC4_uc010qds.1_Silent_p.Q607Q|ARMC4_uc010qdt.1_Missense_Mutation_p.R734G|ARMC4_uc001itz.2_Missense_Mutation_p.R1042G	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	1042							binding			ovary(4)|skin(2)	6						CAAGTGTATCTTGCCTTCTCT	0.453													12	57					0	0	0.00185496	0	0
ARMC4	55130	broad.mit.edu	37	10	28273185	28273185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:28273185C>T	uc009xky.2	-	5	708	c.610G>A	c.(610-612)GAT>AAT	p.D204N	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.D204N|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	204							binding			ovary(4)|skin(2)	6						AGTTCTATATCCTTCTTCACC	0.333													41	107					0	0	0.00361006	0	0
SVIL	6840	broad.mit.edu	37	10	29812863	29812863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:29812863G>A	uc001iut.1	-	15	3433	c.2680C>T	c.(2680-2682)CTT>TTT	p.L894F	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Missense_Mutation_p.L468F	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	894					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TTTGTGCGAAGATCTCCGGCA	0.468													16	56					0	0	0.000566183	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315406	30315406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:30315406G>A	uc001iux.2	-	2	3730	c.3671C>T	c.(3670-3672)CCA>CTA	p.P1224L	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.P1086L|KIAA1462_uc009xle.1_Missense_Mutation_p.P1224L	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1224										ovary(4)	4						TGCCACACTTGGGGTTCTTTC	0.488													32	57					0	0	0.00327116	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317902	30317902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:30317902C>T	uc001iux.2	-	2	1234	c.1175G>A	c.(1174-1176)GGA>GAA	p.G392E	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.G254E|KIAA1462_uc009xle.1_Missense_Mutation_p.G392E	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	392	Pro-rich.									ovary(4)	4						ATTCCCAGTTCCAGGGGGGCC	0.617													14	37					0	0	0.00244969	0	0
ZEB1	6935	broad.mit.edu	37	10	31749965	31749965	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:31749965G>A	uc001ivs.3	+	2	122	c.59_splice	c.e2-1	p.V20_splice	ZEB1_uc001ivr.3_Splice_Site|ZEB1_uc010qee.1_Splice_Site|ZEB1_uc010qef.1_Splice_Site|ZEB1_uc009xlh.1_Splice_Site|ZEB1_uc009xli.1_Splice_Site|ZEB1_uc009xlj.1_Splice_Site_p.V20_splice|ZEB1_uc010qeg.1_Intron|ZEB1_uc009xlk.1_Splice_Site|ZEB1_uc001ivt.3_Splice_Site|ZEB1_uc001ivu.3_Splice_Site_p.V20_splice|ZEB1_uc001ivv.3_Splice_Site_p.V20_splice|ZEB1_uc010qeh.1_Intron|ZEB1_uc009xll.2_Splice_Site|ZEB1_uc009xlm.1_Splice_Site|ZEB1_uc009xln.1_Splice_Site|ZEB1_uc009xlo.1_Splice_Site_p.V3_splice|ZEB1_uc009xlp.2_Splice_Site_p.V3_splice	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b						cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TTGTATTACAGTTACAAATTA	0.289													4	24					0	0	0.000602214	0	0
ZEB1	6935	broad.mit.edu	37	10	31791356	31791356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:31791356G>A	uc001ivs.3	+	4	463	c.400G>A	c.(400-402)GAC>AAC	p.D134N	ZEB1_uc001ivr.3_5'UTR|ZEB1_uc010qee.1_5'UTR|ZEB1_uc010qef.1_5'UTR|ZEB1_uc009xlh.1_RNA|ZEB1_uc009xli.1_RNA|ZEB1_uc009xlj.1_Intron|ZEB1_uc010qeg.1_Intron|ZEB1_uc009xlk.1_5'UTR|ZEB1_uc001ivt.3_5'UTR|ZEB1_uc001ivu.3_Missense_Mutation_p.D135N|ZEB1_uc001ivv.3_Missense_Mutation_p.D114N|ZEB1_uc010qeh.1_Missense_Mutation_p.D67N|ZEB1_uc009xll.2_RNA|ZEB1_uc009xlm.1_RNA|ZEB1_uc009xln.1_RNA|ZEB1_uc009xlo.1_Missense_Mutation_p.D117N|ZEB1_uc009xlp.2_Missense_Mutation_p.D118N	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	134					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ACAACAACAAGACACTGCTGT	0.403													11	51					0	0	0.00136819	0	0
ZEB1	6935	broad.mit.edu	37	10	31791374	31791374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:31791374C>T	uc001ivs.3	+	4	481	c.418C>T	c.(418-420)CCT>TCT	p.P140S	ZEB1_uc001ivr.3_5'UTR|ZEB1_uc010qee.1_5'UTR|ZEB1_uc010qef.1_5'UTR|ZEB1_uc009xlh.1_RNA|ZEB1_uc009xli.1_RNA|ZEB1_uc009xlj.1_Intron|ZEB1_uc010qeg.1_Intron|ZEB1_uc009xlk.1_5'UTR|ZEB1_uc001ivt.3_5'UTR|ZEB1_uc001ivu.3_Missense_Mutation_p.P141S|ZEB1_uc001ivv.3_Missense_Mutation_p.P120S|ZEB1_uc010qeh.1_Missense_Mutation_p.P73S|ZEB1_uc009xll.2_RNA|ZEB1_uc009xlm.1_RNA|ZEB1_uc009xln.1_RNA|ZEB1_uc009xlo.1_Missense_Mutation_p.P123S|ZEB1_uc009xlp.2_Missense_Mutation_p.P124S	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	140					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TGTCATTTTTCCTGAGGCACC	0.423													10	52					0	0	0.000978159	0	0
ZEB1	6935	broad.mit.edu	37	10	31810846	31810846	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:31810846C>T	uc001ivs.3	+	7	2646	c.2583C>T	c.(2581-2583)ATC>ATT	p.I861I	ZEB1_uc001ivr.3_Silent_p.I643I|ZEB1_uc010qee.1_Silent_p.I643I|ZEB1_uc010qef.1_Silent_p.I643I|ZEB1_uc009xlj.1_Silent_p.I787I|ZEB1_uc010qeg.1_Silent_p.I720I|ZEB1_uc009xlk.1_Silent_p.I643I|ZEB1_uc001ivt.3_Silent_p.I643I|ZEB1_uc001ivu.3_Silent_p.I862I|ZEB1_uc001ivv.3_Silent_p.I841I|ZEB1_uc010qeh.1_Silent_p.I794I|ZEB1_uc009xlo.1_Silent_p.I844I|ZEB1_uc009xlp.2_Silent_p.I845I	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	861					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TGAAAGTGATCCAGCCAAATG	0.418													5	13					0	0	0.000602214	0	0
ARHGAP12	94134	broad.mit.edu	37	10	32197512	32197512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:32197512G>A	uc001ivz.1	-	3	542	c.272C>T	c.(271-273)TCC>TTC	p.S91F	ARHGAP12_uc001ivy.1_Missense_Mutation_p.S89F|ARHGAP12_uc009xls.2_Missense_Mutation_p.S89F|ARHGAP12_uc001iwb.1_Missense_Mutation_p.S89F|ARHGAP12_uc001iwc.1_Missense_Mutation_p.S89F|ARHGAP12_uc009xlq.1_Missense_Mutation_p.S89F|ARHGAP12_uc001iwd.1_Missense_Mutation_p.S89F|ARHGAP12_uc009xlr.1_Missense_Mutation_p.S89F	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Rho GTPase activating protein 12	91					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		Prostate(175;0.0199)				TATTTTCGTGGAGTTATTTGG	0.448													8	47					0	0	0.000274275	0	0
EPC1	80314	broad.mit.edu	37	10	32580220	32580220	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:32580220G>T	uc001iwg.1	-	6	1116	c.846C>A	c.(844-846)ATC>ATA	p.I282I	EPC1_uc001iwi.3_Silent_p.I232I|EPC1_uc009xlt.2_Silent_p.I232I|EPC1_uc001iwh.1_Silent_p.I282I	NM_025209	NP_079485	Q9H2F5	EPC1_HUMAN	enhancer of polycomb 1	282					histone H2A acetylation|histone H4 acetylation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear membrane|Piccolo NuA4 histone acetyltransferase complex				ovary(3)|central_nervous_system(1)	4		Prostate(175;0.0199)				CCTCAGACATGATCTCTCCAT	0.294													17	93					2.94398e-08	8.2382e-08	0.000958276	1	0
NRP1	8829	broad.mit.edu	37	10	33496571	33496571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:33496571C>T	uc001iwx.3	-	10	2211	c.1688G>A	c.(1687-1689)AGG>AAG	p.R563K	NRP1_uc001iwv.3_Missense_Mutation_p.R563K|NRP1_uc009xlz.2_Missense_Mutation_p.R563K|NRP1_uc001iww.3_Missense_Mutation_p.R382K|NRP1_uc001iwy.3_Missense_Mutation_p.R563K|NRP1_uc001iwz.2_Missense_Mutation_p.R563K|NRP1_uc001ixa.2_Missense_Mutation_p.R563K|NRP1_uc001ixb.1_Missense_Mutation_p.R563K	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	563	Extracellular (Potential).|F5/8 type C 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	GGGGTAGATCCTGATGAATCG	0.507													17	57					0	0	0.000566183	0	0
PARD3	56288	broad.mit.edu	37	10	34648195	34648195	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:34648195G>A	uc010qej.1	-	14	1947	c.1947C>T	c.(1945-1947)TCC>TCT	p.S649S	PARD3_uc010qek.1_Silent_p.S649S|PARD3_uc010qel.1_Silent_p.S649S|PARD3_uc010qem.1_Silent_p.S636S|PARD3_uc010qen.1_Silent_p.S636S|PARD3_uc010qeo.1_Silent_p.S636S|PARD3_uc010qep.1_Silent_p.S592S|PARD3_uc010qeq.1_Silent_p.S592S|PARD3_uc001ixo.1_Silent_p.S366S|PARD3_uc001ixp.1_Silent_p.S514S|PARD3_uc001ixq.1_Silent_p.S636S|PARD3_uc001ixr.1_Silent_p.S649S|PARD3_uc001ixt.1_Silent_p.S470S|PARD3_uc001ixu.1_Silent_p.S592S|PARD3_uc001ixs.1_Silent_p.S302S	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	649	PDZ 3.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				TGCCCAACAGGGATTCTCCAT	0.413													26	66					0	0	0.000720815	0	0
CUL2	8453	broad.mit.edu	37	10	35333706	35333707	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:35333706_35333707GG>AA	uc001ixv.2	-	7	806_807	c.596_597CC>TT	c.(595-597)CCC>CTT	p.P199L	CUL2_uc009xma.2_Missense_Mutation_p.P68L|CUL2_uc010qer.1_Missense_Mutation_p.P218L|CUL2_uc001ixw.2_Missense_Mutation_p.P199L|CUL2_uc010qes.1_Missense_Mutation_p.P136L	NM_003591	NP_003582	Q13617	CUL2_HUMAN	cullin 2	199					cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding			ovary(3)	3						TTACCTTTAAGGGGAATTTTTT	0.322													11	55					0	0	6.4e-05	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430756	37430756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:37430756G>A	uc001iza.1	+	7	862	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	311						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACCCTTGGTGGAAAGAACACC	0.498													6	28					0	0	0.00198382	0	0
ZNF248	57209	broad.mit.edu	37	10	38126611	38126611	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:38126611A>C	uc001izd.1	-	5	671	c.172T>G	c.(172-174)TTT>GTT	p.F58V	ZNF248_uc009xmc.2_Missense_Mutation_p.F58V|ZNF248_uc001izb.2_RNA|ZNF248_uc001izc.2_Missense_Mutation_p.F58V|ZNF248_uc010qeu.1_Missense_Mutation_p.F58V	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	58	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCGATCTTAAAGATCACTTCT	0.443													7	15					0	0	0.00198382	0	0
ZNF33A	7581	broad.mit.edu	37	10	38344756	38344756	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:38344756C>T	uc001izh.2	+	5	1879	c.1701C>T	c.(1699-1701)CTC>CTT	p.L567L	ZNF33A_uc001izg.2_Silent_p.L568L|ZNF33A_uc010qev.1_Silent_p.L574L|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	567	C2H2-type 9.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						AGTCAACCCTCTCTCAACATT	0.398													10	34					0	0	0.000673444	0	0
OR13A1	79290	broad.mit.edu	37	10	45799011	45799011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:45799011C>T	uc001jcc.1	-	4	1169	c.860G>A	c.(859-861)GGG>GAG	p.G287E	OR13A1_uc001jcd.1_Missense_Mutation_p.G283E	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	287	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTGCTCTTCCCTGCGCTGTA	0.547													5	14					0	0	0.000602214	0	0
ALOX5	240	broad.mit.edu	37	10	45938633	45938633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:45938633G>A	uc001jce.2	+	10	1519	c.1420G>A	c.(1420-1422)GAC>AAC	p.D474N	ALOX5_uc009xmt.2_Missense_Mutation_p.D442N|ALOX5_uc010qfg.1_Missense_Mutation_p.D474N	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	474	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CTACCGGGACGACGGGCTCCT	0.667													15	61					0	0	0.00121646	0	0
PPYR1	5540	broad.mit.edu	37	10	47086898	47086898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:47086898G>A	uc001jee.2	+	3	534	c.115G>A	c.(115-117)GAC>AAC	p.D39N	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.D39N	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	39	Extracellular (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						GGATTCCGTGGACGTGATGGT	0.532													10	94					0	0	0.00136819	0	0
PPYR1	5540	broad.mit.edu	37	10	47087414	47087414	+	Missense_Mutation	SNP	C	T	T	rs142029092	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:47087414C>T	uc001jee.2	+	3	1050	c.631C>T	c.(631-633)CGC>TGC	p.R211C	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.R211C	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	211	Extracellular (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						GGCTCACCACCGCACCATCTA	0.582													8	72					0	0	0.000274275	0	0
PPYR1	5540	broad.mit.edu	37	10	47087590	47087590	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:47087590G>A	uc001jee.2	+	3	1226	c.807G>A	c.(805-807)GTG>GTA	p.V269V	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.V269V	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	269	Helical; Name=6; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						TGCTGGTGGTGATGGTGGTGG	0.607													6	37					0	0	0.00198382	0	0
GDF10	2662	broad.mit.edu	37	10	48426745	48426745	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:48426745T>C	uc001jfb.2	-	3	1718	c.1262A>G	c.(1261-1263)AAC>AGC	p.N421S	GDF10_uc009xnp.2_Missense_Mutation_p.N420S	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	421					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						GGTGGCATGGTTGGATGGACG	0.592											OREG0020165	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	38					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	10	49239431	49239431	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:49239431G>A	uc001jgd.2	-	1	228	c.69C>T	c.(67-69)CTC>CTT	p.L23L						RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		GGTGCATGTGGAGGTCCTCAC	0.582													6	34					0	0	0.00121646	0	0
FRMPD2	143162	broad.mit.edu	37	10	49482596	49482596	+	Silent	SNP	C	T	T	rs146713674		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:49482596C>T	uc001jgi.2	-	1	122	c.15G>A	c.(13-15)ACG>ACA	p.T5T	FRMPD2_uc001jgj.2_Silent_p.T5T	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	5					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		CTGCGTCCTTCGTTAAAGGCT	0.488													14	62					0	0	0.00121646	0	0
LRRC18	474354	broad.mit.edu	37	10	50122160	50122161	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:50122160_50122161GT>AA	uc001jhd.2	-	1	120_121	c.40_41AC>TT	c.(40-42)ACC>TTC	p.T14F	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Missense_Mutation_p.T14F	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	14						cytoplasm				ovary(1)|pancreas(1)	2						CACCTTGAGGGTGATCTTCTTG	0.441													10	22					0	0	6.4e-05	0	0
C10orf71	118461	broad.mit.edu	37	10	50531819	50531819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:50531819C>T	uc010qgp.1	+	3	1568	c.1229C>T	c.(1228-1230)CCT>CTT	p.P410L		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	410											0						AGAGGCCCACCTTTGTATACA	0.458													21	68					0	0	0.000720815	0	0
CHAT	1103	broad.mit.edu	37	10	50827771	50827772	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:50827771_50827772GG>AA	uc001jhz.2	+	3	541_542	c.388_389GG>AA	c.(388-390)GGG>AAG	p.G130K	CHAT_uc001jhv.1_Missense_Mutation_p.G12K|CHAT_uc001jhx.1_Missense_Mutation_p.G12K|CHAT_uc001jhy.1_Missense_Mutation_p.G12K|CHAT_uc001jia.2_Missense_Mutation_p.G12K|CHAT_uc010qgs.1_Missense_Mutation_p.G12K	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	130					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity	p.G130E(1)		central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	TTTCTTCCAGGGGCTGCCCAAA	0.584													5	14					0	0	6.4e-05	0	0
OGDHL	55753	broad.mit.edu	37	10	50964886	50964886	+	Missense_Mutation	SNP	C	T	T	rs145127820	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:50964886C>T	uc001jie.2	-	3	453	c.311G>A	c.(310-312)CGG>CAG	p.R104Q	OGDHL_uc009xog.2_Missense_Mutation_p.R131Q|OGDHL_uc010qgt.1_Intron|OGDHL_uc010qgu.1_Intron|OGDHL_uc009xoh.2_5'UTR	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	104					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGTCTTGGTCCGACTTGAGAC	0.612													5	21					0	0	0.00198382	0	0
SGMS1	259230	broad.mit.edu	37	10	52103686	52103686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:52103686C>T	uc001jje.2	-	7	1143	c.189G>A	c.(187-189)ATG>ATA	p.M63I	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.M63I|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	69	SAM.				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						GGGTTTCTATCATGTCCAGGA	0.532													9	21					0	0	0.000442599	0	0
PCDH15	65217	broad.mit.edu	37	10	55849813	55849813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:55849813C>T	uc001jju.1	-	16	2323	c.1928G>A	c.(1927-1929)CGA>CAA	p.R643Q	PCDH15_uc010qhq.1_Missense_Mutation_p.R648Q|PCDH15_uc010qhr.1_Missense_Mutation_p.R643Q|PCDH15_uc010qhs.1_Missense_Mutation_p.R655Q|PCDH15_uc010qht.1_Missense_Mutation_p.R650Q|PCDH15_uc010qhu.1_Missense_Mutation_p.R643Q|PCDH15_uc001jjv.1_Missense_Mutation_p.R621Q|PCDH15_uc010qhv.1_Missense_Mutation_p.R643Q|PCDH15_uc010qhw.1_Missense_Mutation_p.R606Q|PCDH15_uc010qhx.1_Intron|PCDH15_uc010qhy.1_Missense_Mutation_p.R648Q|PCDH15_uc010qhz.1_Missense_Mutation_p.R643Q|PCDH15_uc010qia.1_Missense_Mutation_p.R621Q|PCDH15_uc010qib.1_Missense_Mutation_p.R621Q|PCDH15_uc001jjw.2_Missense_Mutation_p.R643Q	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	643	Cadherin 6.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTCTCCCTCTCGATCAGTTGC	0.333										HNSCC(58;0.16)			7	28					0	0	0.000274275	0	0
PCDH15	65217	broad.mit.edu	37	10	55944945	55944945	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:55944945G>A	uc001jju.1	-	12	1784	c.1389C>T	c.(1387-1389)CTC>CTT	p.L463L	PCDH15_uc010qhq.1_Silent_p.L468L|PCDH15_uc010qhr.1_Silent_p.L463L|PCDH15_uc010qhs.1_Silent_p.L475L|PCDH15_uc010qht.1_Silent_p.L470L|PCDH15_uc010qhu.1_Silent_p.L463L|PCDH15_uc001jjv.1_Silent_p.L441L|PCDH15_uc010qhv.1_Silent_p.L463L|PCDH15_uc010qhw.1_Silent_p.L426L|PCDH15_uc010qhx.1_Silent_p.L463L|PCDH15_uc010qhy.1_Silent_p.L468L|PCDH15_uc010qhz.1_Silent_p.L463L|PCDH15_uc010qia.1_Silent_p.L441L|PCDH15_uc010qib.1_Silent_p.L441L|PCDH15_uc001jjw.2_Silent_p.L463L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	463	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GAAGTAAGGTGAGGTAGCGAG	0.363										HNSCC(58;0.16)			8	35					0	0	0.000442599	0	0
BICC1	80114	broad.mit.edu	37	10	60549031	60549031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:60549031C>T	uc001jki.1	+	7	610	c.610C>T	c.(610-612)CCT>TCT	p.P204S		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	204					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						GGAGCTGCTTCCTTTGGTGCT	0.383													9	34					0	0	0.000442599	0	0
ANK3	288	broad.mit.edu	37	10	61802491	61802491	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:61802491C>T	uc001jky.2	-	43	13284	c.13092G>A	c.(13090-13092)ACG>ACA	p.T4364T	ANK3_uc001jkw.2_Silent_p.T988T|ANK3_uc009xpa.2_Silent_p.T987T|ANK3_uc001jkx.2_Silent_p.T1031T|ANK3_uc010qih.1_Silent_p.T1855T|ANK3_uc001jkz.3_Silent_p.T1848T|ANK3_uc001jkv.2_Silent_p.T387T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4364					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTCTTTCTTCGTTTTCACCT	0.398													20	53					0	0	0.00229938	0	0
ANK3	288	broad.mit.edu	37	10	61994473	61994473	+	Silent	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:61994473T>A	uc001jky.2	-	8	1062	c.870A>T	c.(868-870)CGA>CGT	p.R290R	ANK3_uc010qih.1_Silent_p.R273R|ANK3_uc001jkz.3_Silent_p.R284R|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	290	ANK 7.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTTAGCTCCTCGATCGAGCA	0.383													6	21					0	0	0.00198382	0	0
ZNF365	22891	broad.mit.edu	37	10	64136687	64136687	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:64136687G>A	uc001jmc.2	+	2	1050	c.735G>A	c.(733-735)AGG>AGA	p.R245R	ZNF365_uc001jly.3_Silent_p.R260R|ZNF365_uc001jmb.3_Silent_p.R245R|ZNF365_uc001jlz.3_Silent_p.R245R|ZNF365_uc001jma.3_Intron	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					AGCTTCTTAGGAAAGAAGAGT	0.502													10	38					0	0	0.00136819	0	0
CTNNA3	29119	broad.mit.edu	37	10	68280388	68280388	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:68280388G>A	uc009xpn.1	-	11	1641	c.1518C>T	c.(1516-1518)TTC>TTT	p.F506F	CTNNA3_uc001jmw.2_Silent_p.F506F|CTNNA3_uc001jmx.3_Silent_p.F506F	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	506					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						ATACAGCAAGGAAGTCATCAA	0.294													10	22					0	0	0.000978159	0	0
TET1	80312	broad.mit.edu	37	10	70332628	70332628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:70332628C>T	uc001jok.3	+	2	1038	c.533C>T	c.(532-534)CCC>CTC	p.P178L		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	178					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GTACAAAATCCCTCTTTACTT	0.448													11	42					0	0	0.00185496	0	0
KIAA1274	27143	broad.mit.edu	37	10	72324250	72324250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:72324250G>A	uc001jrd.3	+	19	2674	c.2393G>A	c.(2392-2394)AGG>AAG	p.R798K	KIAA1274_uc001jre.3_Missense_Mutation_p.R89K	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	798										ovary(2)|central_nervous_system(1)	3						TCCTGGCAGAGGCCCTTCAGC	0.647													19	34					0	0	0.00188189	0	0
USP54	159195	broad.mit.edu	37	10	75258467	75258467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:75258467C>T	uc001juo.2	-	22	4992	c.4975G>A	c.(4975-4977)GAG>AAG	p.E1659K	PPP3CB_uc001juf.2_5'Flank|PPP3CB_uc001jue.2_5'Flank|PPP3CB_uc001jug.2_5'Flank|PPP3CB_uc001jui.2_5'Flank|PPP3CB_uc001juh.2_5'Flank|USP54_uc010qkk.1_Missense_Mutation_p.E794K|USP54_uc001juk.2_Missense_Mutation_p.E747K|USP54_uc001jul.2_Missense_Mutation_p.E700K|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	1659					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					AGAAACCCCTCTCCCACTGTT	0.517													11	28					0	0	0.000978159	0	0
VCL	7414	broad.mit.edu	37	10	75865061	75865061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:75865061C>T	uc001jwd.2	+	16	2478	c.2384C>T	c.(2383-2385)TCC>TTC	p.S795F	VCL_uc009xrr.2_Missense_Mutation_p.S544F|VCL_uc010qky.1_Missense_Mutation_p.S702F|VCL_uc001jwe.2_Missense_Mutation_p.S795F|VCL_uc010qkz.1_Intron	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	795	N-terminal globular head.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					AAAACCATCTCCCCGATGGTG	0.522													16	27					0	0	0.00074312	0	0
MYST4	23522	broad.mit.edu	37	10	76603188	76603188	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:76603188C>T	uc001jwn.1	+	3	1066	c.573C>T	c.(571-573)TTC>TTT	p.F191F	MYST4_uc001jwm.1_Silent_p.F191F|MYST4_uc001jwo.1_Silent_p.F191F|MYST4_uc001jwp.1_Silent_p.F191F	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	191					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					CCAGTGCATTCCCATCCTCGC	0.502			T	CREBBP	AML								11	30					0	0	0.000673444	0	0
POLR3A	11128	broad.mit.edu	37	10	79778949	79778949	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:79778949G>A	uc001jzn.2	-	9	1354	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	420					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			TCTGCTGAATGAAGTTTGCTC	0.413													21	44					0	0	0.000878237	0	0
POLR3A	11128	broad.mit.edu	37	10	79781441	79781441	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:79781441C>T	uc001jzn.2	-	8	1143	c.1049_splice	c.e8-1	p.G350_splice		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide						innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			CTAAATCGACCTAAATAGCCA	0.488													9	26					0	0	0.000442599	0	0
SFTPD	6441	broad.mit.edu	37	10	81697911	81697911	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:81697911C>T	uc001kbh.2	-	8	868	c.825G>A	c.(823-825)ACG>ACA	p.T275T	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	275	C-type lectin.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			GCTGTGCCTCCGTAAATGGTT	0.532													15	38					0	0	0.00074312	0	0
DYDC1	143241	broad.mit.edu	37	10	82098873	82098873	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:82098873C>G	uc001kbx.2	-	6	544	c.379G>C	c.(379-381)GAA>CAA	p.E127Q	DYDC1_uc001kby.1_Missense_Mutation_p.E127Q|DYDC1_uc009xsr.1_Missense_Mutation_p.E127Q	NM_138812	NP_620167	Q8WWB3	DYDC1_HUMAN	DPY30 domain containing 1	127											0			Colorectal(32;0.229)			AGAATATCTTCATTCCTAACT	0.254													8	30					0	0	0.000274275	0	0
LRIT2	340745	broad.mit.edu	37	10	85984273	85984273	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:85984273G>A	uc001kcy.2	-	2	716	c.708C>T	c.(706-708)TCC>TCT	p.S236S	LRIT2_uc010qmc.1_Silent_p.S236S	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	236	LRRCT.					integral to membrane				ovary(2)	2						GCCCTGCCTTGGACAGAGGGC	0.517													7	52					0	0	0.000274275	0	0
RGR	5995	broad.mit.edu	37	10	86007459	86007459	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:86007459G>A	uc001kdc.1	+	2	230	c.192G>A	c.(190-192)GGG>GGA	p.G64G	RGR_uc001kdb.1_Missense_Mutation_p.D48N|RGR_uc001kdd.1_Silent_p.G64G|RGR_uc001kde.1_Silent_p.G64G	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	64	Helical; Name=2; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						CGGACAGTGGGATCAGCCTGA	0.632													18	30					0	0	0.00152264	0	0
MMRN2	79812	broad.mit.edu	37	10	88703301	88703301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:88703301C>T	uc001kea.2	-	6	1367	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	MMRN2_uc010qmn.1_Missense_Mutation_p.E57K|MMRN2_uc009xtb.2_Missense_Mutation_p.E371K	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	414	Potential.					extracellular space				large_intestine(1)	1						GAGTACAGTTCCTTGATCTCA	0.612													21	35					0	0	0.00278032	0	0
AGAP11	119385	broad.mit.edu	37	10	88768736	88768736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:88768736C>T	uc001kee.2	+	12	1931	c.727C>T	c.(727-729)CCT>TCT	p.P243S	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	243	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GCCCCCCTCCCCTCATGCCAA	0.488													5	57					0	0	0.00307968	0	0
FAS	355	broad.mit.edu	37	10	90774052	90774052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:90774052C>T	uc001kfr.2	+	9	1199	c.853C>T	c.(853-855)CAT>TAT	p.H285Y	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_3'UTR|FAS_uc001kft.2_Missense_Mutation_p.H264Y|FAS_uc010qnb.1_RNA|FAS_uc010qnc.1_RNA|FAS_uc001kfw.2_3'UTR|FAS_uc010qnd.1_RNA|FAS_uc010qne.1_RNA|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	285	Death.|Interaction with HIPK3 (By similarity).|Cytoplasmic (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		GCATCAACTTCATGGAAAGAA	0.373									Autoimmune_Lymphoproliferative_syndrome_type_I				24	74					0	0	0.00229938	0	0
HTR7	3363	broad.mit.edu	37	10	92509192	92509192	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:92509192G>A	uc001kha.2	-	2	942	c.699C>T	c.(697-699)ATC>ATT	p.I233I	HTR7_uc001kgz.2_Silent_p.I233I|HTR7_uc001khb.2_Silent_p.I233I	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	233	Extracellular (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	AGTCCTGGCTGATCAAGCACA	0.468													7	23					0	0	0.00198382	0	0
HTR7	3363	broad.mit.edu	37	10	92509303	92509303	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:92509303C>T	uc001kha.2	-	2	831	c.588G>A	c.(586-588)GGG>GGA	p.G196G	HTR7_uc001kgz.2_Silent_p.G196G|HTR7_uc001khb.2_Silent_p.G196G	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	196	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	CCATGCATTTCCCATTCTGCC	0.488													11	24					0	0	0.00136819	0	0
PPP1R3C	5507	broad.mit.edu	37	10	93390174	93390174	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:93390174T>A	uc001kho.2	-	2	596	c.464A>T	c.(463-465)AAC>ATC	p.N155I		NM_005398	NP_005389	Q9UQK1	PPR3C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	155	Interaction with EPM2A.|CBM21.						protein serine/threonine phosphatase activity			breast(1)	1		Colorectal(252;0.235)				ACAGACAAAGTTCTTCTGAAA	0.423													12	48					0	0	0.00244969	0	0
IDE	3416	broad.mit.edu	37	10	94228677	94228677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:94228677G>A	uc001kia.2	-	19	2355	c.2279C>T	c.(2278-2280)CCA>CTA	p.P760L	IDE_uc010qnp.1_Missense_Mutation_p.P205L|IDE_uc001khz.2_Missense_Mutation_p.P205L	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	760					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CAGCTGACTTGGAAGGAGAGG	0.418													12	227					0	0	0.00316338	0	0
MYOF	26509	broad.mit.edu	37	10	95116512	95116512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:95116512G>A	uc001kin.2	-	30	3337	c.3214C>T	c.(3214-3216)CGC>TGC	p.R1072C	MYOF_uc001kio.2_Missense_Mutation_p.R1059C|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1072	Cytoplasmic (Potential).|Poly-Arg.				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						CGTCTGCGGCGGAAGGTATCT	0.473													15	33					0	0	0.00316338	0	0
MYOF	26509	broad.mit.edu	37	10	95191178	95191178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:95191178C>T	uc001kin.2	-	4	455	c.332G>A	c.(331-333)GGG>GAG	p.G111E	MYOF_uc001kio.2_Missense_Mutation_p.G111E|MYOF_uc001kip.3_Missense_Mutation_p.G111E|MYOF_uc009xuf.2_Missense_Mutation_p.G93E	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	111	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						AGTATCTTGCCCTTTTTCATT	0.418													4	26					0	0	0.00024832	0	0
CEP55	55165	broad.mit.edu	37	10	95276986	95276986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:95276986C>T	uc009xug.2	+	6	1156	c.974C>T	c.(973-975)TCC>TTC	p.S325F	CEP55_uc001kiq.3_Missense_Mutation_p.S325F	NM_001127182	NP_001120654	Q53EZ4	CEP55_HUMAN	centrosomal protein 55kDa	325	Potential.				cell division|mitosis	centriole|cleavage furrow|midbody					0		Colorectal(252;0.207)				AAGAAGAGATCCGAAGAGCTC	0.269													5	61					0	0	0.00116845	0	0
PDE6C	5146	broad.mit.edu	37	10	95372538	95372538	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:95372538T>G	uc001kiu.3	+	1	194	c.56T>G	c.(55-57)TTT>TGT	p.F19C		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	19					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				AACCCTCAGTTTGCCAAGGAG	0.522													17	31					0	0	0.00188189	0	0
LGI1	9211	broad.mit.edu	37	10	95552643	95552643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:95552643C>T	uc001kjc.3	+	6	983	c.647C>T	c.(646-648)TCG>TTG	p.S216L	LGI1_uc010qnv.1_Missense_Mutation_p.S168L|LGI1_uc001kjd.3_Missense_Mutation_p.S216L|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	216	LRRCT.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				AGTCTCTCCTCGAAGGATTTT	0.418													16	27					0	0	0.00188189	0	0
PLCE1	51196	broad.mit.edu	37	10	95791609	95791609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:95791609C>T	uc001kjk.2	+	2	1440	c.806C>T	c.(805-807)TCT>TTT	p.S269F	PLCE1_uc010qnx.1_Missense_Mutation_p.S269F	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	269					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TTTGAAGGCTCTTGTGAGAAG	0.388													13	30					0	0	0.00185496	0	0
PLCE1	51196	broad.mit.edu	37	10	96006212	96006212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:96006212G>A	uc001kjk.2	+	8	3564	c.2930G>A	c.(2929-2931)GGG>GAG	p.G977E	PLCE1_uc010qnx.1_Missense_Mutation_p.G977E|PLCE1_uc001kjm.2_Missense_Mutation_p.G669E	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	977					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TTGCTCTATGGGCTTCAGACC	0.468													19	52					0	0	0.00229938	0	0
CYP2C19	1557	broad.mit.edu	37	10	96534882	96534882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:96534882G>A	uc010qnz.1	+	2	236	c.236G>A	c.(235-237)GGA>GAA	p.G79E	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Missense_Mutation_p.G57E	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	79					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	GTGCTGCATGGATATGAAGTG	0.458													16	35					0	0	0.000422831	0	0
CYP2C19	1557	broad.mit.edu	37	10	96602762	96602762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:96602762G>A	uc010qnz.1	+	7	1130	c.1130G>A	c.(1129-1131)AGA>AAA	p.R377K	CYP2C19_uc010qny.1_Missense_Mutation_p.R355K	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	377					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	GTTAAATTCAGAAACTACCTC	0.468													11	37					0	0	0.00244969	0	0
CYP2C9	1559	broad.mit.edu	37	10	96748604	96748604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:96748604G>A	uc001kka.3	+	9	1317	c.1292G>A	c.(1291-1293)GGA>GAA	p.G431E	CYP2C9_uc009xut.2_Missense_Mutation_p.G429E	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	431					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CTATTTTCAGGAAAACGGATT	0.438													8	29					0	0	0.000978159	0	0
C10orf129	142827	broad.mit.edu	37	10	96971721	96971721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:96971721G>A	uc001kke.2	+	6	967	c.842G>A	c.(841-843)GGA>GAA	p.G281E	C10orf129_uc009xuu.1_Missense_Mutation_p.G191E	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	281					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GCTGTCTTGGGAACTTGGTTC	0.483													11	25					0	0	0.00136819	0	0
ZNF518A	9849	broad.mit.edu	37	10	97919819	97919819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:97919819G>A	uc001klp.2	+	6	4597	c.3740G>A	c.(3739-3741)AGA>AAA	p.R1247K	ZNF518A_uc001klo.1_Missense_Mutation_p.R717K|ZNF518A_uc001klq.2_Missense_Mutation_p.R1247K|ZNF518A_uc001klr.2_Missense_Mutation_p.R1247K	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	1247					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		AACTTCAATAGAAAAAAGACT	0.343													9	41					0	0	0.000978159	0	0
DNTT	1791	broad.mit.edu	37	10	98092307	98092307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:98092307C>T	uc001kmf.2	+	9	1483	c.1313C>T	c.(1312-1314)CCC>CTC	p.P438L	DNTT_uc001kmg.2_Missense_Mutation_p.P438L	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	438	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		GTTCTGTGCCCCTACGAGCGT	0.537													17	31					0	0	0.000958276	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98362082	98362082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:98362082G>A	uc001kmq.2	-	16	2443	c.2315C>T	c.(2314-2316)TCC>TTC	p.S772F	PIK3AP1_uc001kmo.2_Missense_Mutation_p.S371F|PIK3AP1_uc001kmp.2_Missense_Mutation_p.S594F	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	772	Pro-rich.					cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		TCTCTCGAGGGACATGGTGGG	0.507													14	18					0	0	0.000422831	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98388183	98388183	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:98388183C>T	uc001kmq.2	-	9	1571	c.1443G>A	c.(1441-1443)AAG>AAA	p.K481K	PIK3AP1_uc001kmo.2_Silent_p.K80K|PIK3AP1_uc001kmp.2_Silent_p.K303K	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	481						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		TCATAGAGTCCTTAGTGGCCC	0.423													28	64					0	0	0.00327116	0	0
C10orf12	26148	broad.mit.edu	37	10	98742644	98742644	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:98742644C>T	uc001kmv.2	+	1	1604	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	499										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		GTAAAAAATTCCCTGAGGCCT	0.418													23	36					0	0	0.00332997	0	0
SLIT1	6585	broad.mit.edu	37	10	98819289	98819289	+	Splice_Site	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:98819289C>G	uc001kmw.2	-	11	1266	c.1014_splice	c.e11-1	p.I338_splice	SLIT1_uc009xvh.1_Missense_Mutation_p.R348T	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor						axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GCTCAGGTCTCTGCAAGGTGA	0.597													10	12					0	0	0.000673444	0	0
RRP12	23223	broad.mit.edu	37	10	99126519	99126519	+	Silent	SNP	G	T	T	rs139760006		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:99126519G>T	uc001knf.2	-	27	3334	c.3195C>A	c.(3193-3195)CCC>CCA	p.P1065P	RRP12_uc001kne.2_Silent_p.P80P|RRP12_uc009xvl.2_Silent_p.P182P|RRP12_uc009xvm.2_Silent_p.P783P|RRP12_uc010qou.1_Silent_p.P1004P|RRP12_uc009xvn.2_Silent_p.P965P	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	1065	Glu-rich.					integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		TGCCCTGGGCGGGctcctcct	0.567													5	58					0.00116845	0.0032496	0.00116845	1	0
ANKRD2	26287	broad.mit.edu	37	10	99338083	99338083	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:99338083G>A	uc001knw.2	+	3	566	c.357G>A	c.(355-357)CGG>CGA	p.R119R	ANKRD2_uc009xvu.2_Silent_p.R119R	NM_020349	NP_065082	Q9GZV1	ANKR2_HUMAN	ankyrin repeat domain 2 isoform a	119					muscle contraction|muscle organ development		structural constituent of muscle				0		all_hematologic(284;1.95e-06)|Colorectal(252;0.0163)		Epithelial(162;1.18e-94)|all cancers(201;9.31e-86)|BRCA - Breast invasive adenocarcinoma(275;0.0233)|STAD - Stomach adenocarcinoma(243;0.181)|KIRC - Kidney renal clear cell carcinoma(50;0.206)|Kidney(138;0.241)		TCGAGCTGCGGAAGAAACGCA	0.672													4	11					0	0	0.00024832	0	0
SLC25A28	81894	broad.mit.edu	37	10	101370859	101370859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:101370859G>A	uc001kpx.2	-	4	971	c.842C>T	c.(841-843)CCA>CTA	p.P281L	SLC25A28_uc001kpy.2_Missense_Mutation_p.P94L	NM_031212	NP_112489	Q96A46	MFRN2_HUMAN	solute carrier family 25, member 28	281	Solcar 3.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Colorectal(252;0.234)		Epithelial(162;2.57e-10)|all cancers(201;2.01e-08)		AACGTCCAGTGGGGTTGTGGC	0.557													6	22					0	0	0.00198382	0	0
CPN1	1369	broad.mit.edu	37	10	101829480	101829480	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:101829480C>T	uc001kql.2	-	3	827	c.567G>A	c.(565-567)TGG>TGA	p.W189*		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	189	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		CCTGACTTTTCCAGTTGTCTG	0.448													19	61					0	0	0.00074312	0	0
KAZALD1	81621	broad.mit.edu	37	10	102824124	102824124	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:102824124G>A	uc001ksr.2	+	3	1543	c.618G>A	c.(616-618)AGG>AGA	p.R206R	KAZALD1_uc001kss.3_RNA|KAZALD1_uc001kst.1_Silent_p.R206R|uc001ksu.2_5'Flank	NM_030929	NP_112191	Q96I82	KAZD1_HUMAN	Kazal-type serine peptidase inhibitor domain 1	206	Ig-like C2-type.				cell differentiation|multicellular organismal development|ossification|regulation of cell growth		insulin-like growth factor binding				0				Epithelial(162;6.21e-09)|all cancers(201;3.14e-07)		TCGAGTGGAGGAAGGATGGCT	0.572													6	19					0	0	0.00116845	0	0
BTRC	8945	broad.mit.edu	37	10	103281544	103281544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:103281544C>T	uc001kta.2	+	5	586	c.473C>T	c.(472-474)TCC>TTC	p.S158F	BTRC_uc001ktb.2_Missense_Mutation_p.S122F|BTRC_uc001ktc.2_Missense_Mutation_p.S132F	NM_033637	NP_378663	Q9Y297	FBW1A_HUMAN	beta-transducin repeat containing protein	158	Homodimerization domain D.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|positive regulation of proteolysis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|viral reproduction|Wnt receptor signaling pathway	cytosol|nucleus|SCF ubiquitin ligase complex				ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;1.05e-08)|all cancers(201;6.59e-07)		CATCTTATATCCCAAATGTGT	0.393													17	61					0	0	0.000958276	0	0
BTRC	8945	broad.mit.edu	37	10	103292172	103292172	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:103292172C>T	uc001kta.2	+	8	1074	c.961C>T	c.(961-963)CGA>TGA	p.R321*	BTRC_uc001ktb.2_Nonsense_Mutation_p.R285*|BTRC_uc001ktc.2_Nonsense_Mutation_p.R295*	NM_033637	NP_378663	Q9Y297	FBW1A_HUMAN	beta-transducin repeat containing protein	321	WD 1.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|positive regulation of proteolysis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|viral reproduction|Wnt receptor signaling pathway	cytosol|nucleus|SCF ubiquitin ligase complex				ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;1.05e-08)|all cancers(201;6.59e-07)		AAGCGGCCTTCGAGACAACAC	0.408													25	68					0	0	0.00178596	0	0
AS3MT	57412	broad.mit.edu	37	10	104629864	104629864	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:104629864G>T	uc001kwk.2	+	3	206	c.66G>T	c.(64-66)AAG>AAT	p.K22N	AS3MT_uc001kwj.2_Missense_Mutation_p.K24N|AS3MT_uc009xxh.2_Missense_Mutation_p.K22N	NM_020682	NP_065733	Q9HBK9	AS3MT_HUMAN	arsenic (+3 oxidation state) methyltransferase	22					arsonoacetate metabolic process|toxin metabolic process	cytosol	arsenite methyltransferase activity|methylarsonite methyltransferase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;5.87e-09)|all cancers(201;1.58e-07)|BRCA - Breast invasive adenocarcinoma(275;0.223)		AGGTGCTGAAGAGATCGGCAG	0.612													9	15					7.48243e-07	2.09175e-06	0.000442599	1	0
CNNM2	54805	broad.mit.edu	37	10	104828438	104828438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:104828438C>T	uc001kwm.2	+	5	2250	c.2126C>T	c.(2125-2127)GCC>GTC	p.A709V	CNNM2_uc001kwn.2_Missense_Mutation_p.A709V	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	709					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		GAAGCGAGCGCCTTCTCATAC	0.517													4	15					0	0	0.00024832	0	0
SORCS3	22986	broad.mit.edu	37	10	106737116	106737116	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:106737116G>A	uc001kyi.1	+	4	1046	c.819G>A	c.(817-819)GAG>GAA	p.E273E		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	273	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GTGATCCTGAGATGGAGAGCA	0.393													10	44					0	0	0.000978159	0	0
SORCS3	22986	broad.mit.edu	37	10	106916913	106916913	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:106916913G>A	uc001kyi.1	+	10	1727	c.1500G>A	c.(1498-1500)GGG>GGA	p.G500G		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	500	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GTATCAAAGGGATATTTCTGG	0.507													9	26					0	0	0.000673444	0	0
SORCS3	22986	broad.mit.edu	37	10	106961007	106961007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:106961007G>A	uc001kyi.1	+	16	2484	c.2257G>A	c.(2257-2259)GAG>AAG	p.E753K	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	753	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TTGGGACTTCGAGTGGTGAGT	0.512													11	37					0	0	0.000673444	0	0
C10orf81	79949	broad.mit.edu	37	10	115533988	115533988	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:115533988G>A	uc001lat.1	+	8	1219	c.657G>A	c.(655-657)TTG>TTA	p.L219L	C10orf81_uc001lar.1_Silent_p.L225L|C10orf81_uc009xyc.1_Silent_p.L137L|C10orf81_uc001las.1_Silent_p.L137L|C10orf81_uc001lau.1_Silent_p.L39L	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	219										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		ATCTGCAGTTGGATAATATCA	0.403													9	25					0	0	0.000442599	0	0
VWA2	340706	broad.mit.edu	37	10	116038530	116038530	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:116038530G>A	uc001lbl.1	+	8	1074	c.753G>A	c.(751-753)CGG>CGA	p.R251R	VWA2_uc001lbk.1_Silent_p.R251R|VWA2_uc009xyf.1_5'UTR	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	251						extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		AGATGGTCCGGGAGTTCGCTG	0.637													9	28					0	0	0.000274275	0	0
ABLIM1	3983	broad.mit.edu	37	10	116232792	116232792	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:116232792C>G	uc010qsg.1	-	10	1318	c.1219G>C	c.(1219-1221)GAG>CAG	p.E407Q	ABLIM1_uc010qsh.1_Missense_Mutation_p.E375Q|ABLIM1_uc010qsi.1_Missense_Mutation_p.E347Q|ABLIM1_uc010qsk.1_Missense_Mutation_p.E331Q|ABLIM1_uc009xyp.2_Missense_Mutation_p.E369Q|ABLIM1_uc010qsf.1_Missense_Mutation_p.E119Q|ABLIM1_uc009xyn.2_Missense_Mutation_p.E58Q|ABLIM1_uc010qsj.1_Missense_Mutation_p.E84Q|ABLIM1_uc009xyo.2_Missense_Mutation_p.E255Q	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	407					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		TAGAAAGGCTCATAGGTAATA	0.418													19	69					0	0	0.00121646	0	0
ATRNL1	26033	broad.mit.edu	37	10	116919912	116919912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:116919912G>A	uc001lcg.2	+	6	1327	c.941G>A	c.(940-942)GGG>GAG	p.G314E	ATRNL1_uc001lce.2_RNA|ATRNL1_uc001lcf.2_Missense_Mutation_p.G314E|ATRNL1_uc009xyq.2_Missense_Mutation_p.G314E	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	314	Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		GTTTTACACGGGAAATTTATG	0.368													10	32					0	0	0.000978159	0	0
PRDX3	10935	broad.mit.edu	37	10	120934047	120934047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:120934047G>A	uc001lec.2	-	3	270	c.227C>T	c.(226-228)GCC>GTC	p.A76V		NM_006793	NP_006784	P30048	PRDX3_HUMAN	peroxiredoxin 3 isoform a precursor	76	Thioredoxin.				cell redox homeostasis|hydrogen peroxide catabolic process|mitochondrion organization|myeloid cell differentiation|negative regulation of kinase activity|positive regulation of cell proliferation|positive regulation of NF-kappaB transcription factor activity|regulation of mitochondrial membrane potential|response to lipopolysaccharide	early endosome|mitochondrion	alkyl hydroperoxide reductase activity|caspase inhibitor activity|peroxidase activity|peroxiredoxin activity|protein C-terminus binding|protein kinase binding				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0245)		ATTGACAACGGCTGTACCCTT	0.408													10	27					0	0	0.000978159	0	0
BAG3	9531	broad.mit.edu	37	10	121432051	121432051	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:121432051C>T	uc001lem.2	+	3	1098	c.792C>T	c.(790-792)TCC>TCT	p.S264S	BAG3_uc001lel.2_Silent_p.S264S	NM_004281	NP_004272	O95817	BAG3_HUMAN	BCL2-associated athanogene 3	264					anti-apoptosis|apoptosis|protein folding	cytosol				ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		GGGCGGCATCCCCGTTCAGGT	0.687													4	13					0	0	0.000602214	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122263349	122263349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:122263349C>T	uc001lev.1	+	2	428	c.76C>T	c.(76-78)CCG>TCG	p.P26S	PPAPDC1A_uc010qtd.1_Missense_Mutation_p.P26S|PPAPDC1A_uc009xzl.1_Missense_Mutation_p.P26S|PPAPDC1A_uc001lew.1_Missense_Mutation_p.P26S|PPAPDC1A_uc001lex.1_Missense_Mutation_p.P26S|PPAPDC1A_uc001ley.1_5'UTR	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	26					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		GTTTTTGGATCCGTTCCAGAG	0.438													7	39					0	0	0.00307968	0	0
FGFR2	2263	broad.mit.edu	37	10	123310941	123310941	+	Missense_Mutation	SNP	C	T	T	rs67257519		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:123310941C>T	uc010qtk.1	-	5	1134	c.487G>A	c.(487-489)GAA>AAA	p.E163K	FGFR2_uc010qtg.1_Missense_Mutation_p.E163K|FGFR2_uc010qth.1_Missense_Mutation_p.E48K|FGFR2_uc010qti.1_Missense_Mutation_p.E74K|FGFR2_uc010qtj.1_Missense_Mutation_p.E163K|FGFR2_uc010qtl.1_Missense_Mutation_p.E163K|FGFR2_uc010qtm.1_Missense_Mutation_p.E48K|FGFR2_uc001lfl.3_Missense_Mutation_p.E163K|FGFR2_uc001lfm.2_Missense_Mutation_p.E74K|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Missense_Mutation_p.E182K|FGFR2_uc010qto.1_Missense_Mutation_p.E67K|FGFR2_uc001lfo.1_Missense_Mutation_p.E182K|FGFR2_uc010qtp.1_Missense_Mutation_p.E182K|FGFR2_uc010qtq.1_Missense_Mutation_p.E182K	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	163	Ig-like C2-type 2.|Heparin-binding.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	AGCCGCTTTTCCATCTTTTCT	0.512		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				16	36					0	0	0.000566183	0	0
TACC2	10579	broad.mit.edu	37	10	123843116	123843116	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:123843116G>A	uc001lfv.2	+	4	1461	c.1101G>A	c.(1099-1101)CTG>CTA	p.L367L	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.L367L|TACC2_uc010qtv.1_Silent_p.L367L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	367						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGGAGGCTCTGGACACCATTG	0.632													10	27					0	0	0.000978159	0	0
TACC2	10579	broad.mit.edu	37	10	123971130	123971130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:123971130C>T	uc001lfv.2	+	9	7550	c.7190C>T	c.(7189-7191)TCC>TTC	p.S2397F	TACC2_uc001lfw.2_Missense_Mutation_p.S543F|TACC2_uc009xzx.2_Missense_Mutation_p.S2352F|TACC2_uc010qtv.1_Missense_Mutation_p.S2401F|TACC2_uc001lfx.2_Missense_Mutation_p.S101F|TACC2_uc001lfy.2_Missense_Mutation_p.S101F|TACC2_uc001lfz.2_Missense_Mutation_p.S475F|TACC2_uc001lga.2_Missense_Mutation_p.S475F|TACC2_uc009xzy.2_Missense_Mutation_p.S475F|TACC2_uc001lgb.2_Missense_Mutation_p.S432F|TACC2_uc010qtw.1_Missense_Mutation_p.S492F	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2397	SPAZ.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TCCCCAGCCTCCTTTGAGATC	0.512													10	23					0	0	0.000442599	0	0
TACC2	10579	broad.mit.edu	37	10	124001492	124001492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:124001492G>A	uc001lfv.2	+	19	8728	c.8368G>A	c.(8368-8370)GAG>AAG	p.E2790K	TACC2_uc001lfw.2_Missense_Mutation_p.E936K|TACC2_uc009xzx.2_Missense_Mutation_p.E2668K|TACC2_uc010qtv.1_Missense_Mutation_p.E2717K|TACC2_uc001lfx.2_Missense_Mutation_p.E417K|TACC2_uc001lfy.2_Missense_Mutation_p.E413K|TACC2_uc001lfz.2_Missense_Mutation_p.E868K|TACC2_uc001lga.2_Missense_Mutation_p.E838K|TACC2_uc009xzy.2_Missense_Mutation_p.E850K|TACC2_uc001lgb.2_Missense_Mutation_p.E748K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2790	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GGCCGAGTATGAGAAGACCAT	0.517													18	51					0	0	0.00229938	0	0
DMBT1	1755	broad.mit.edu	37	10	124351962	124351962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:124351962G>A	uc001lgk.1	+	20	2457	c.2351G>A	c.(2350-2352)GGA>GAA	p.G784E	DMBT1_uc001lgl.1_Missense_Mutation_p.G774E|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.G784E|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.G397E	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	784	SRCR 6.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCGGCCCCAGGAAATGCCCGG	0.627													26	21					0	0	0.00106085	0	0
DMBT1	1755	broad.mit.edu	37	10	124358388	124358388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:124358388G>A	uc001lgk.1	+	26	3161	c.3055G>A	c.(3055-3057)GAT>AAT	p.D1019N	DMBT1_uc001lgl.1_Missense_Mutation_p.D1009N|DMBT1_uc001lgm.1_Missense_Mutation_p.D520N|DMBT1_uc009xzz.1_Missense_Mutation_p.D1019N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1019	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CACCGTGTGCGATGACAGCTG	0.602													35	104					0	0	0.00283554	0	0
DMBT1	1755	broad.mit.edu	37	10	124399741	124399741	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:124399741A>G	uc001lgk.1	+	52	6847	c.6741A>G	c.(6739-6741)GAA>GAG	p.E2247E	DMBT1_uc001lgl.1_Silent_p.E2237E|DMBT1_uc001lgm.1_Silent_p.E1619E|DMBT1_uc009xzz.1_Silent_p.E2246E|DMBT1_uc010qtx.1_Silent_p.E967E|DMBT1_uc009yab.1_Silent_p.E950E|DMBT1_uc009yac.1_Silent_p.E541E	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2247	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AGGTCGAGGAAGTCCAGTATG	0.473													5	91					0	0	0.000602214	0	0
C10orf120	399814	broad.mit.edu	37	10	124457997	124457997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:124457997C>T	uc001lgn.2	-	3	292	c.260G>A	c.(259-261)GGT>GAT	p.G87D		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	87										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GTGAATGCCACCTAGACGCTG	0.488													60	123					0	0	0.00361006	0	0
C10orf120	399814	broad.mit.edu	37	10	124458929	124458929	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:124458929C>T	uc001lgn.2	-	2	209	c.177_splice	c.e2-1	p.R59_splice		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814											kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GCTCCATATCCTGCAAGAAGA	0.463													6	20					0	0	0.00198382	0	0
CUZD1	50624	broad.mit.edu	37	10	124595826	124595826	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:124595826T>C	uc001lgq.2	-	6	1190	c.858A>G	c.(856-858)ATA>ATG	p.I286M	CUZD1_uc001lgp.2_Missense_Mutation_p.I5M|CUZD1_uc009yad.2_Missense_Mutation_p.I5M|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_Missense_Mutation_p.I5M|CUZD1_uc010qty.1_Missense_Mutation_p.I5M|CUZD1_uc009yae.2_Missense_Mutation_p.I5M|CUZD1_uc001lgs.2_Missense_Mutation_p.I286M|CUZD1_uc010qtz.1_Missense_Mutation_p.I286M	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	286	Extracellular (Potential).|ZP.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		AGGATTTGCTTATAATAACTC	0.348													6	29					0	0	0.00116845	0	0
CPXM2	119587	broad.mit.edu	37	10	125539742	125539742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:125539742C>T	uc001lhk.1	-	7	1244	c.919G>A	c.(919-921)GAG>AAG	p.E307K	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	307					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GTGGTCATCTCGTTCCGGCGG	0.438													27	76					0	0	0.000720815	0	0
CHST15	51363	broad.mit.edu	37	10	125805243	125805243	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:125805243C>T	uc001lhl.2	-	1	999	c.486G>A	c.(484-486)AGG>AGA	p.R162R	CHST15_uc001lhm.2_Silent_p.R162R|CHST15_uc001lhn.2_Silent_p.R162R|CHST15_uc010que.1_Silent_p.R162R|CHST15_uc001lho.2_Silent_p.R162R	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	162	Lumenal (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						TGAACTCAATCCTAGTTGTGA	0.393													14	233					0	0	0.00185496	0	0
ADAM12	8038	broad.mit.edu	37	10	127787064	127787064	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:127787064A>G	uc001ljk.2	-	10	1339	c.926T>C	c.(925-927)GTT>GCT	p.V309A	ADAM12_uc010qul.1_Missense_Mutation_p.V260A|ADAM12_uc001ljm.2_Missense_Mutation_p.V309A|ADAM12_uc001ljn.2_Missense_Mutation_p.V306A|ADAM12_uc001ljl.3_Missense_Mutation_p.V306A	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	309	Extracellular (Potential).|Peptidase M12B.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		TTGGAAATAAACCCCACTAGG	0.433													16	39					0	0	0.00074312	0	0
DOCK1	1793	broad.mit.edu	37	10	129224186	129224186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:129224186G>A	uc001ljt.2	+	47	4826	c.4762G>A	c.(4762-4764)GAG>AAG	p.E1588K	DOCK1_uc010qun.1_Missense_Mutation_p.E1609K|DOCK1_uc009yaq.2_Missense_Mutation_p.E583K	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1588	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CAAAGTCACGGAGGCACTGAG	0.488													44	74					0	0	0.00361006	0	0
MKI67	4288	broad.mit.edu	37	10	129902337	129902337	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:129902337G>A	uc001lke.2	-	13	7962	c.7767C>T	c.(7765-7767)CCC>CCT	p.P2589P	MKI67_uc001lkf.2_Silent_p.P2229P|MKI67_uc009yav.1_Silent_p.P2164P|MKI67_uc009yaw.1_Silent_p.P1739P	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2589	14.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GTTCTGGTGGGGGAGATTTGC	0.473													29	47					0	0	0.0024448	0	0
KNDC1	85442	broad.mit.edu	37	10	135038169	135038169	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:135038169C>T	uc001llz.1	+	30	5026	c.5025C>T	c.(5023-5025)ATC>ATT	p.I1675I		NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1675	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GAAGGAACATCGCAAAGGTGG	0.592													6	10					0	0	0.00307968	0	0
FRG2B	441581	broad.mit.edu	37	10	135440150	135440150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr10:135440150C>T	uc010qvg.1	-	1	150	c.97G>A	c.(97-99)GGC>AGC	p.G33S		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	33						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TCATCTGAGCCCTTTTCTGTA	0.507													14	66					0	0	0.00152264	0	0
PSMD13	5719	broad.mit.edu	37	11	244428	244428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:244428C>T	uc001lol.2	+	5	510	c.268C>T	c.(268-270)CCT>TCT	p.P90S	PSMD13_uc010qvr.1_RNA|PSMD13_uc001loo.2_Missense_Mutation_p.P92S|PSMD13_uc001lon.2_Missense_Mutation_p.P25S|PSMD13_uc001lom.2_Missense_Mutation_p.P65S	NM_002817	NP_002808	Q9UNM6	PSD13_HUMAN	proteasome 26S non-ATPase subunit 13 isoform 1	90					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding			ovary(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.79e-27)|Epithelial(43;4e-26)|OV - Ovarian serous cystadenocarcinoma(40;6.02e-21)|BRCA - Breast invasive adenocarcinoma(625;3.93e-05)|Lung(200;0.112)|LUSC - Lung squamous cell carcinoma(625;0.129)		TTTTCCAGATCCTAATGTGGC	0.398													15	62					0	0	0.00074312	0	0
PHRF1	57661	broad.mit.edu	37	11	607121	607121	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:607121C>T	uc001lqe.2	+	14	1796	c.1665C>T	c.(1663-1665)TTC>TTT	p.F555F	PHRF1_uc010qwc.1_Silent_p.F554F|PHRF1_uc010qwd.1_Silent_p.F553F|PHRF1_uc010qwe.1_Silent_p.F551F|PHRF1_uc009ybz.1_Silent_p.F345F|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	555							RNA polymerase binding|zinc ion binding				0						AAGAAGGATTCAAGGGCTGCC	0.562													8	21					0	0	0.000274275	0	0
DRD4	1815	broad.mit.edu	37	11	639793	639793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:639793C>T	uc001lqp.1	+	3	544	c.544C>T	c.(544-546)CCC>TCC	p.P182S		NM_000797	NP_000788	P21917	DRD4_HUMAN	dopamine receptor D4	182	Extracellular (Potential).				activation of MAPK activity|adult locomotory behavior|arachidonic acid secretion|behavioral fear response|behavioral response to cocaine|behavioral response to ethanol|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of protein secretion|positive regulation of sodium:hydrogen antiporter activity|regulation of dopamine metabolic process|regulation of inhibitory postsynaptic membrane potential|response to amphetamine|response to histamine|social behavior	integral to plasma membrane	dopamine D4 receptor activity|drug binding|potassium channel regulator activity|SH3 domain binding				0		all_cancers(49;1.69e-08)|all_epithelial(84;1.65e-05)|Breast(177;0.000231)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.36e-28)|Epithelial(43;2.59e-27)|OV - Ovarian serous cystadenocarcinoma(40;3.53e-21)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Apomorphine(DB00714)|Clozapine(DB00363)|Olanzapine(DB00334)|Pramipexole(DB00413)|Promazine(DB00420)|Propiomazine(DB00777)|Ropinirole(DB00268)|Thiethylperazine(DB00372)|Ziprasidone(DB00246)	CGGCCGCGACCCCGCCGTGTG	0.716													4	15					0	0	0.000602214	0	0
AP2A2	161	broad.mit.edu	37	11	988673	988674	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:988673_988674CC>TT	uc001lss.2	+	10	1434_1435	c.1253_1254CC>TT	c.(1252-1254)TCC>TTT	p.S418F	AP2A2_uc001lst.1_Missense_Mutation_p.S419F|AP2A2_uc009yco.1_RNA	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	418					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCTGACTACTCCATCCGAGAAG	0.604													10	43					0	0	6.4e-05	0	0
MUC5B	727897	broad.mit.edu	37	11	1251278	1251278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:1251278C>T	uc009ycr.1	+	27	3367	c.3241C>T	c.(3241-3243)CCT>TCT	p.P1081S	MUC5B_uc009yct.1_Missense_Mutation_p.P422S|MUC5B_uc001ltb.2_Missense_Mutation_p.P425S|MUC5B_uc001lta.2_Missense_Mutation_p.P90S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	422					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCTGCCGTGCCCTGGCACCTG	0.652													4	16					0	0	0.00024832	0	0
MUC5B	727897	broad.mit.edu	37	11	1269647	1269647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:1269647C>T	uc009ycr.1	+	50	13247	c.13121C>T	c.(13120-13122)GCC>GTC	p.A4374V	MUC5B_uc001ltb.2_Missense_Mutation_p.A3849V	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3846	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACAACCAGGGCCACCGGCTCT	0.637													6	38					0	0	0.00198382	0	0
MUC5B	727897	broad.mit.edu	37	11	1270362	1270362	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:1270362G>A	uc009ycr.1	+	51	13797	c.13671G>A	c.(13669-13671)ACG>ACA	p.T4557T	MUC5B_uc001ltb.2_Silent_p.T4087T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4084	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCCCAGGGACGACCACCCCGG	0.706													11	32					0	0	0.00136819	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629400	1629400	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:1629400G>A	uc001ltw.1	-	1	294	c.216C>T	c.(214-216)GGC>GGT	p.G72G		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	72	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		CCCCCTTGCAGCCCCCACAAG	0.677													15	30					0	0	0.00244969	0	0
TSSC4	10078	broad.mit.edu	37	11	2423940	2423941	+	Missense_Mutation	DNP	CC	TT	TT	rs147689306		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:2423940_2423941CC>TT	uc001lwj.2	+	4	438_439	c.77_78CC>TT	c.(76-78)TCC>TTT	p.S26F	TSSC4_uc001lwi.2_Intron|TSSC4_uc001lwk.2_Missense_Mutation_p.S26F|TSSC4_uc001lwl.2_Missense_Mutation_p.S26F	NM_005706	NP_005697	Q9Y5U2	TSSC4_HUMAN	tumor suppressing subtransferable candidate 4	26											0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.00145)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACGCTGCCTTCCGACACAGTCT	0.653													20	69					0	0	6.4e-05	0	0
CDKN1C	1028	broad.mit.edu	37	11	2906618	2906618	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:2906618G>A	uc001lws.3	-	1	378	c.102C>T	c.(100-102)TTC>TTT	p.F34F	CDKN1C_uc001lwu.3_Silent_p.F23F|CDKN1C_uc009ydr.2_Silent_p.F23F|CDKN1C_uc001lwt.3_Silent_p.F23F|CDKN1C_uc001lwr.3_Silent_p.F34F	NM_000076	NP_000067	P49918	CDN1C_HUMAN	cyclin-dependent kinase inhibitor 1C isoform a	34					cell cycle arrest|G1 phase of mitotic cell cycle|negative regulation of epithelial cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of cyclin-dependent protein kinase activity	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding			central_nervous_system(1)	1		all_epithelial(84;0.000187)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|Breast(177;0.00328)|all_neural(188;0.00681)|all_lung(207;0.157)|Lung NSC(207;0.216)		BRCA - Breast invasive adenocarcinoma(625;0.0025)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCACCGGCCCGAAGAGGCTGC	0.682									Beckwith-Wiedemann_syndrome				6	26					0	0	0.00116845	0	0
ZNF195	7748	broad.mit.edu	37	11	3380778	3380779	+	Missense_Mutation	DNP	GT	AC	AC			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:3380778_3380779GT>AC	uc001lxt.2	-	6	1637_1638	c.1459_1460AC>GT	c.(1459-1461)ACT>GTT	p.T487V	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Missense_Mutation_p.T464V|ZNF195_uc001lxs.2_Missense_Mutation_p.T415V|ZNF195_uc010qxr.1_Missense_Mutation_p.T468V|ZNF195_uc009ydz.2_Missense_Mutation_p.T442V|ZNF195_uc001lxu.2_Missense_Mutation_p.T419V	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	487	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		TTCAGAATGAGTTCTCTTATGG	0.431													47	44					0	0	6.4e-05	0	0
ZNF195	7748	broad.mit.edu	37	11	3381464	3381464	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:3381464G>A	uc001lxt.2	-	6	952	c.774C>T	c.(772-774)TTC>TTT	p.F258F	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Silent_p.F235F|ZNF195_uc001lxs.2_Silent_p.F186F|ZNF195_uc010qxr.1_Silent_p.F239F|ZNF195_uc009ydz.2_Silent_p.F213F|ZNF195_uc001lxu.2_Silent_p.F190F	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	258	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		GTTCAGTTAGGAATGAGAGCA	0.338													16	60					0	0	0.00316338	0	0
NUP98	4928	broad.mit.edu	37	11	3704564	3704564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:3704564G>A	uc001lyh.2	-	30	5075	c.4784C>T	c.(4783-4785)CCT>CTT	p.P1595L	NUP98_uc001lyi.2_Missense_Mutation_p.P1521L|NUP98_uc001lyg.2_Missense_Mutation_p.P560L	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1612					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		CCATTTGGCAGGTACACGGAG	0.537			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								20	54					0	0	0.00278032	0	0
OR52K1	390036	broad.mit.edu	37	11	4510188	4510188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4510188C>T	uc001lza.1	+	1	58	c.58C>T	c.(58-60)CCT>TCT	p.P20S		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		GGTAGGAATTCCTGGTTTGGA	0.473													20	76					0	0	0.00332997	0	0
OR52M1	119772	broad.mit.edu	37	11	4567141	4567141	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4567141C>T	uc010qyf.1	+	1	721	c.721C>T	c.(721-723)CTG>TTG	p.L241L		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTTAAAACCCTGGGGACATG	0.512													12	36					0	0	0.00136819	0	0
TRIM68	55128	broad.mit.edu	37	11	4626489	4626489	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4626489G>A	uc001lzf.1	-	2	484	c.246C>T	c.(244-246)GTC>GTT	p.V82V	TRIM68_uc001lzg.1_5'UTR|TRIM68_uc010qyj.1_Intron|TRIM68_uc009yek.1_Silent_p.V82V	NM_018073	NP_060543	Q6AZZ1	TRI68_HUMAN	ring finger protein 137	82					protein autoubiquitination|regulation of androgen receptor signaling pathway	Golgi apparatus|nucleolus|perinuclear region of cytoplasm	androgen receptor binding|histone acetyltransferase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;9.49e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		TTAGCAGACGGACTTTTTCTA	0.527													18	84					0	0	0.000958276	0	0
OR51D1	390038	broad.mit.edu	37	11	4661092	4661092	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4661092C>T	uc010qyk.1	+	1	72	c.72C>T	c.(70-72)TTC>TTT	p.F24F		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGCATACTTCCTTTTGGTGG	0.502													25	52					0	0	0.00395357	0	0
OR51D1	390038	broad.mit.edu	37	11	4661402	4661402	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4661402C>T	uc010qyk.1	+	1	382	c.382C>T	c.(382-384)CTG>TTG	p.L128L		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	128	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTCAGCTGTCCTGCTGGCCAT	0.547													5	29					0	0	0.000602214	0	0
OR52R1	119695	broad.mit.edu	37	11	4825358	4825358	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4825358A>G	uc010qym.1	-	1	490	c.490T>C	c.(490-492)TTG>CTG	p.L164L		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		AATATGGCCAACATCTTAGGT	0.507													7	42					0	0	0.000274275	0	0
OR51S1	119692	broad.mit.edu	37	11	4869932	4869932	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4869932G>A	uc010qyo.1	-	1	507	c.507C>T	c.(505-507)TTC>TTT	p.F169F		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGGCCAGCAGGAATGGCAGGG	0.552													27	32					0	0	0.0024448	0	0
OR51T1	401665	broad.mit.edu	37	11	4903171	4903171	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4903171C>T	uc010qyp.1	+	1	123	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCTCAAACTTCCTCCTCACTG	0.413													8	24					0	0	0.000274275	0	0
OR51A7	119687	broad.mit.edu	37	11	4928635	4928635	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4928635C>T	uc010qyq.1	+	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCAAGCTTTTCCTTCTGATTG	0.458													6	21					0	0	0.00116845	0	0
OR51A7	119687	broad.mit.edu	37	11	4929223	4929223	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4929223G>A	uc010qyq.1	+	1	624	c.624G>A	c.(622-624)CTG>CTA	p.L208L		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTACTATGCTGGACTTGGCAC	0.443													12	43					0	0	0.00185496	0	0
OR51A4	401666	broad.mit.edu	37	11	4968000	4968000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:4968000C>T	uc010qys.1	-	1	331	c.331G>A	c.(331-333)GTA>ATA	p.V111I		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GACTCCAGTACTGAGAATCCA	0.453													10	119					0	0	0.00185496	0	0
OR52J3	119679	broad.mit.edu	37	11	5068032	5068032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5068032G>A	uc010qyv.1	+	1	277	c.277G>A	c.(277-279)GAG>AAG	p.E93K		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGATGCTCACGAGATTAACTA	0.488													11	16					0	0	0.00136819	0	0
OR52J3	119679	broad.mit.edu	37	11	5068516	5068516	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5068516T>A	uc010qyv.1	+	1	761	c.761T>A	c.(760-762)ATC>AAC	p.I254N		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTTTTCTATATCCCTTCAGTC	0.448													9	37					0	0	0.000978159	0	0
HBB	3043	broad.mit.edu	37	11	5247954	5247954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5247954C>T	uc001mae.1	-	2	218	c.168G>A	c.(166-168)ATG>ATA	p.M56I		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	56			M -> K (in Matera; unstable).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	TAGGGTTGCCCATAACAGCAT	0.532									Sickle_Cell_Trait				8	27					0	0	0.000673444	0	0
HBD	3045	broad.mit.edu	37	11	5255355	5255355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5255355C>T	uc001maf.1	-	2	376	c.181G>A	c.(181-183)GTG>ATG	p.V61M		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	61					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGAGCCTTCACCTTAGGGTTG	0.532													12	43					0	0	0.00244969	0	0
OR51B4	79339	broad.mit.edu	37	11	5322817	5322817	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5322817G>A	uc010qza.1	-	1	360	c.360C>T	c.(358-360)TTC>TTT	p.F120F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGATGGCAATGAAACAGTCAT	0.458													16	37					0	0	0.000422831	0	0
OR51B6	390058	broad.mit.edu	37	11	5373593	5373593	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5373593A>G	uc010qzb.1	+	1	856	c.856A>G	c.(856-858)AAC>GAC	p.N286D	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACCTTTTATGAACCCATTTAT	0.388													20	40					0	0	0.00121646	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443436	5443436	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5443436C>T	uc010qzd.1	+	1	6	c.6C>T	c.(4-6)TCC>TCT	p.S2S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGTCATGTCCCAGGTGACTA	0.448													9	46					0	0	0.000442599	0	0
UBQLNL	143630	broad.mit.edu	37	11	5536697	5536697	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5536697C>T	uc001maz.3	-	1	1260	c.975G>A	c.(973-975)CAG>CAA	p.Q325Q	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	325										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		TTGCAGGATGCTGTGTGAGCT	0.507													18	26					0	0	0.00074312	0	0
OR52B6	340980	broad.mit.edu	37	11	5602595	5602595	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5602595C>T	uc010qzi.1	+	1	489	c.489C>T	c.(487-489)ATC>ATT	p.I163I	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTGGGAAGATCGTCACTGCCG	0.512													37	81					0	0	0.00361006	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5653872	5653872	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5653872T>G	uc001mbf.2	+	8	1617	c.1373T>G	c.(1372-1374)CTC>CGC	p.L458R	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Missense_Mutation_p.L104R|TRIM34_uc009yeq.2_5'UTR|TRIM34_uc001mbi.2_Missense_Mutation_p.L104R|TRIM34_uc001mbj.2_Missense_Mutation_p.L104R	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	458						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		GGAGAGAAACTCCTACTCTTC	0.493													3	13					0	0	6.4e-05	0	0
OR56B1	387748	broad.mit.edu	37	11	5757749	5757749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5757749G>A	uc001mbt.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Missense_Mutation_p.M1I|OR56B1_uc009yev.1_Missense_Mutation_p.M1I	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		GTTGAATCATGAATCATATGT	0.388													17	50					0	0	0.00121646	0	0
OR56B1	387748	broad.mit.edu	37	11	5758189	5758189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5758189C>T	uc001mbt.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Missense_Mutation_p.S148F|OR56B1_uc009yev.1_Missense_Mutation_p.S148F	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	148	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		GTCACCAGTTCCTTAATCTTA	0.443													6	28					0	0	0.00198382	0	0
OR52N2	390077	broad.mit.edu	37	11	5841884	5841884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5841884C>T	uc010qzp.1	+	1	319	c.319C>T	c.(319-321)CAT>TAT	p.H107Y	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTTTTTTGTCCATATGCTGAC	0.517													20	18					0	0	0.00229938	0	0
OR56A5	390084	broad.mit.edu	37	11	5989578	5989578	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:5989578C>T	uc010qzu.1	-	1	147	c.147G>A	c.(145-147)CTG>CTA	p.L49L		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	49	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						AGATGGTGATCAGAAGGGTGG	0.592													4	10					0	0	0.000602214	0	0
OR52L1	338751	broad.mit.edu	37	11	6007457	6007457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:6007457G>A	uc001mcd.2	-	1	759	c.704C>T	c.(703-705)TCC>TTC	p.S235F		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	235	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGGGCATAGGAAACACCAAT	0.517													10	46					0	0	0.000673444	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806802	6806802	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:6806802C>T	uc001mer.1	+	1	534	c.534C>T	c.(532-534)CTC>CTT	p.L178L		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GGCATCTTCTCTGTGAGATCC	0.517													10	21					0	0	0.000978159	0	0
OR6A2	8590	broad.mit.edu	37	11	6816865	6816865	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:6816865C>T	uc001mes.1	-	1	275	c.75G>A	c.(73-75)CAG>CAA	p.Q25Q		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	25	Extracellular (Potential).			APLQVL -> VPIQVI (in Ref. 1; AAC70018).	sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ACAATAGTACCTGTAGTGGCG	0.498													3	13					0	0	6.4e-05	0	0
OR10A5	144124	broad.mit.edu	37	11	6867534	6867535	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:6867534_6867535GG>AA	uc001met.1	+	1	621_622	c.621_622GG>AA	c.(619-624)GTGGTC>GTAATC	p.V208I		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCATTCTGGTGGTCATGATCCC	0.51													13	72					0	0	6.4e-05	0	0
OR10A4	283297	broad.mit.edu	37	11	6898089	6898089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:6898089G>A	uc010rat.1	+	1	211	c.211G>A	c.(211-213)GAG>AAG	p.E71K		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GTCCTTCCTGGAGATAGGTTT	0.453													11	58					0	0	0.00185496	0	0
NLRP14	338323	broad.mit.edu	37	11	7063651	7063651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:7063651G>A	uc001mfb.1	+	4	717	c.394G>A	c.(394-396)GAA>AAA	p.E132K		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	132					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		TAGAATAAAGGAAAAATTTTG	0.338													16	56					0	0	0.00121646	0	0
NLRP14	338323	broad.mit.edu	37	11	7070920	7070920	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:7070920C>T	uc001mfb.1	+	6	2465	c.2142C>T	c.(2140-2142)TTC>TTT	p.F714F		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	714					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		TTATCACTTTCCCTGATGGTT	0.358													8	64					0	0	0.000442599	0	0
OR5P2	120065	broad.mit.edu	37	11	7818247	7818247	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:7818247G>A	uc001mfp.1	-	1	243	c.243C>T	c.(241-243)TTC>TTT	p.F81F		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCTCCACCAGGAAGTTTACAA	0.483													17	48					0	0	0.000958276	0	0
NLRP10	338322	broad.mit.edu	37	11	7981217	7981217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:7981217C>T	uc001mfv.1	-	2	1959	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	648							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TTTGGTGTTTCCTCTGTCCCT	0.249													13	43					0	0	0.00244969	0	0
RIC3	79608	broad.mit.edu	37	11	8148267	8148267	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:8148267G>A	uc001mgd.2	-	5	663	c.609C>T	c.(607-609)TTC>TTT	p.F203F	RIC3_uc001mgb.2_Silent_p.F41F|RIC3_uc001mgc.2_Silent_p.F202F|RIC3_uc001mge.2_Intron|RIC3_uc010rbl.1_Silent_p.F153F|RIC3_uc010rbm.1_Silent_p.F231F|RIC3_uc009yfm.2_Intron|RIC3_uc009yfn.2_Silent_p.F6F	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	203	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		ATCTGTCAATGAATTTTCCTT	0.443													15	44					0	0	0.00074312	0	0
ASCL3	56676	broad.mit.edu	37	11	8959625	8959625	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:8959625G>A	uc001mhd.1	-	2	144	c.84C>T	c.(82-84)TCC>TCT	p.S28S		NM_020646	NP_065697	Q9NQ33	ASCL3_HUMAN	ASCL3	27					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleolus	DNA binding				0				Epithelial(150;1.48e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0228)		CCAGATAGAAGGACCTGGTCA	0.547													43	69					0	0	0.00361006	0	0
SCUBE2	57758	broad.mit.edu	37	11	9080872	9080872	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:9080872T>G	uc001mhh.1	-	9	1148	c.1068A>C	c.(1066-1068)TTA>TTC	p.L356F	SCUBE2_uc001mhi.1_Missense_Mutation_p.L356F|SCUBE2_uc001mhj.1_Missense_Mutation_p.L356F	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	356	EGF-like 7; calcium-binding (Potential).					extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		TCTCATCTGTTAATAATTTAA	0.473													10	39					0	0	0.00185496	0	0
DENND5A	23258	broad.mit.edu	37	11	9202335	9202335	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:9202335T>C	uc001mhl.2	-	6	1689	c.1434A>G	c.(1432-1434)AGA>AGG	p.R478R	DENND5A_uc010rbw.1_Silent_p.R478R|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	478										liver(1)	1						TCACCCCAGTTCTCTTGACCA	0.498													19	86					0	0	0.00278032	0	0
ZNF143	7702	broad.mit.edu	37	11	9546840	9546840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:9546840G>A	uc001mhr.2	+	15	1858	c.1740G>A	c.(1738-1740)ATG>ATA	p.M580I	ZNF143_uc009yfu.2_Missense_Mutation_p.M579I|ZNF143_uc010rby.1_Missense_Mutation_p.M549I	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	580					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		CATCAGAAATGGGGCACCAGC	0.443													20	53					0	0	0.00229938	0	0
SBF2	81846	broad.mit.edu	37	11	10064411	10064411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:10064411C>T	uc001mib.2	-	3	397	c.259G>A	c.(259-261)GAG>AAG	p.E87K	SBF2_uc001mif.3_5'UTR|SBF2_uc001mij.2_RNA	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	87					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		ATCTCTGCCTCATAGAAGGTT	0.413													7	48					0	0	0.00198382	0	0
SPON1	10418	broad.mit.edu	37	11	14279261	14279261	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:14279261G>A	uc001mle.2	+	12	1848	c.1310_splice	c.e12-1	p.D437_splice		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein						cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		ACTCTTTCCAGATGACACCCC	0.557													3	9					0	0	0.00024832	0	0
INSC	387755	broad.mit.edu	37	11	15222432	15222432	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:15222432C>T	uc001mly.2	+	7	943	c.897C>T	c.(895-897)CCC>CCT	p.P299P	INSC_uc001mlz.2_Silent_p.P252P|INSC_uc001mma.2_Silent_p.P252P|INSC_uc010rcs.1_Silent_p.P287P|INSC_uc001mmb.2_Silent_p.P252P|INSC_uc001mmc.2_Intron	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	299					cell differentiation|nervous system development	cytoplasm	binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						GCTTGTACCCCCAGGCGCTCC	0.587													4	11					0	0	0.000602214	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17135970	17135970	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:17135970G>A	uc001mmq.3	-	19	3325	c.3259C>T	c.(3259-3261)CAG>TAG	p.Q1087*	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Nonsense_Mutation_p.Q707*|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	1087					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	TTATTTTTCTGAAAAAAGGAC	0.318													48	78					0	0	0.00361006	0	0
KCNJ11	3767	broad.mit.edu	37	11	17409117	17409117	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:17409117G>A	uc001mna.2	-	1	1090	c.522C>T	c.(520-522)GCC>GCT	p.A174A	KCNJ11_uc001mnb.3_Silent_p.A87A	NM_000525	NP_000516	B4DWI4	B4DWI4_HUMAN	potassium inwardly-rectifying channel J11	174						integral to membrane	ATP-activated inward rectifier potassium channel activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0276)|Colorectal(2;0.0633)		CCCTGCGGTGGGCTTGGGCAG	0.597											OREG0020810	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	147					0	0	0.00222228	0	0
ABCC8	6833	broad.mit.edu	37	11	17464409	17464409	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:17464409C>T	uc001mnc.2	-	10	1614	c.1488G>A	c.(1486-1488)CTG>CTA	p.L496L	ABCC8_uc010rcy.1_Silent_p.L495L	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	496	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TGGTCTGCTTCAGCCGCTCAT	0.607													33	83					0	0	0.000953801	0	0
ABCC8	6833	broad.mit.edu	37	11	17483349	17483349	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:17483349C>G	uc001mnc.2	-	5	729	c.603G>C	c.(601-603)CCG>CCC	p.P201P	ABCC8_uc010rcy.1_Silent_p.P201P	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	201	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TCACCTCCCTCGGTGTCTTGA	0.577													25	138					0	0	0.000720815	0	0
SERGEF	26297	broad.mit.edu	37	11	17809777	17809777	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:17809777T>A	uc001mnm.2	-	11	1312	c.1232A>T	c.(1231-1233)GAC>GTC	p.D411V	SERGEF_uc009yhd.2_RNA|SERGEF_uc001mnn.2_3'UTR	NM_012139	NP_036271	Q9UGK8	SRGEF_HUMAN	deafness locus associated putative guanine	411					negative regulation of protein secretion|signal transduction	cytoplasm|nucleus	protein binding|Ran guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1						GACCTTGGGGTCCTGGACCAA	0.562													7	30					0	0	0.00307968	0	0
SPTY2D1	144108	broad.mit.edu	37	11	18636786	18636786	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:18636786C>A	uc001moy.2	-	3	1251	c.1035G>T	c.(1033-1035)CTG>CTT	p.L345L	SPTY2D1_uc010rdi.1_Silent_p.L345L	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	345	Ser-rich.									breast(1)	1						TAGGATGGGACAGAGATTTTT	0.542													31	111					1.61788e-16	4.5487e-16	0.0024448	1	0
SPTY2D1	144108	broad.mit.edu	37	11	18637278	18637278	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:18637278A>T	uc001moy.2	-	3	759	c.543T>A	c.(541-543)TTT>TTA	p.F181L	SPTY2D1_uc010rdi.1_Missense_Mutation_p.F181L	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	181										breast(1)	1						CCACTGGTTCAAACTGCTTTT	0.458													23	85					0	0	0.00278032	0	0
IGSF22	283284	broad.mit.edu	37	11	18738425	18738425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:18738425C>T	uc009yht.2	-	10	1286	c.1096G>A	c.(1096-1098)GAG>AAG	p.E366K	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	366										ovary(4)|large_intestine(2)|kidney(1)	7						CTCTTCAGCTCCTTCCCATTG	0.507													29	133					0	0	0.000814825	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955932	18955932	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:18955932G>C	uc001mpg.2	-	1	618	c.400C>G	c.(400-402)CGC>GGC	p.R134G		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	134	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TGTGTGGGGCGGTGGCAGCGG	0.607													10	25					0	0	0.000978159	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077810	19077810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:19077810C>T	uc001mph.2	-	2	228	c.140G>A	c.(139-141)GGA>GAA	p.G47E		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	47	Helical; Name=1; (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						AAACCCGTTTCCTACCAGCCC	0.582													8	38					0	0	0.00307968	0	0
E2F8	79733	broad.mit.edu	37	11	19247302	19247302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:19247302C>T	uc001mpm.2	-	11	2525	c.2003G>A	c.(2002-2004)AGG>AAG	p.R668K	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Missense_Mutation_p.R668K	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	668					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						GCTGTAAATCCTGTGGTTTGG	0.473													33	56					0	0	0.00283554	0	0
E2F8	79733	broad.mit.edu	37	11	19251093	19251093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:19251093C>T	uc001mpm.2	-	10	2323	c.1801G>A	c.(1801-1803)GAA>AAA	p.E601K	E2F8_uc009yhv.2_Intron|E2F8_uc001mpn.3_Missense_Mutation_p.E601K	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	601					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						GAGCCTCTTTCTCCAGCTGGC	0.517													25	73					0	0	0.00332997	0	0
E2F8	79733	broad.mit.edu	37	11	19256297	19256297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:19256297G>A	uc001mpm.2	-	5	1282	c.760C>T	c.(760-762)CGG>TGG	p.R254W	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Missense_Mutation_p.R254W	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	254					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						TCACCTGCCCGAAATTCCACT	0.453													21	36					0	0	0.00278032	0	0
PRMT3	10196	broad.mit.edu	37	11	20486071	20486071	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:20486071C>T	uc001mqb.2	+	13	1543	c.1326C>T	c.(1324-1326)ATC>ATT	p.I442I	PRMT3_uc001mqc.2_Silent_p.I365I|PRMT3_uc010rdn.1_Silent_p.I380I	NM_005788	NP_005779	O60678	ANM3_HUMAN	protein arginine methyltransferase 3 isoform 1	442							zinc ion binding				0						CCCTGAAAATCACAAGGACAT	0.378													13	50					0	0	0.000566183	0	0
PRMT3	10196	broad.mit.edu	37	11	20529934	20529934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:20529934C>T	uc001mqb.2	+	16	1788	c.1571C>T	c.(1570-1572)TCA>TTA	p.S524L	PRMT3_uc001mqc.2_Missense_Mutation_p.S447L|PRMT3_uc010rdn.1_Missense_Mutation_p.S462L	NM_005788	NP_005779	O60678	ANM3_HUMAN	protein arginine methyltransferase 3 isoform 1	524							zinc ion binding				0						TTGAATAATTCAACTCAAACT	0.443													9	44					0	0	0.00136819	0	0
ANO3	63982	broad.mit.edu	37	11	26646015	26646015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:26646015G>A	uc001mqt.3	+	18	1988	c.1843G>A	c.(1843-1845)GAA>AAA	p.E615K	ANO3_uc010rdr.1_Missense_Mutation_p.E599K|ANO3_uc010rds.1_Missense_Mutation_p.E454K|ANO3_uc010rdt.1_Missense_Mutation_p.E469K	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	615	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACAGGCTTATGAAAAAATTGC	0.318													13	77					0	0	0.00316338	0	0
LGR4	55366	broad.mit.edu	37	11	27393943	27393943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:27393943G>A	uc001mrj.3	-	16	1867	c.1382C>T	c.(1381-1383)TCT>TTT	p.S461F	LGR4_uc001mrk.3_Missense_Mutation_p.S437F	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	461	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						TACTGATAAAGACCTGGAAAA	0.378													10	48					0	0	0.000978159	0	0
KIF18A	81930	broad.mit.edu	37	11	28112980	28112980	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:28112980G>A	uc001msc.2	-	4	746	c.564C>T	c.(562-564)GTC>GTT	p.V188V		NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	188	Kinesin-motor.				blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						GTCCATGAACGACCACCCCTT	0.378													19	107					0	0	0.00278032	0	0
Unknown	0	broad.mit.edu	37	11	30946866	30946866	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:30946866C>T	uc001mss.1	-	1		c.90G>A			uc009yjk.1_Missense_Mutation_p.R444K					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		CAGTTCATCTCTTTGCAGGTC	0.338													25	106					0	0	0.000878237	0	0
DEPDC7	91614	broad.mit.edu	37	11	33047353	33047353	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:33047353C>T	uc001mub.2	+	2	314	c.222C>T	c.(220-222)GTC>GTT	p.V74V	DEPDC7_uc010reg.1_Silent_p.V74V|DEPDC7_uc010reh.1_Silent_p.V74V|DEPDC7_uc001muc.2_Silent_p.V65V	NM_001077242	NP_001070710	Q96QD5	DEPD7_HUMAN	novel 58.3 KDA protein isoform 1	74	DEP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|skin(1)	2						CTGTGGATGTCATTTTTTCTC	0.388													23	109					0	0	0.000720815	0	0
TCP11L1	55346	broad.mit.edu	37	11	33090374	33090374	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:33090374C>T	uc001mud.2	+	9	1696	c.1296C>T	c.(1294-1296)GCC>GCT	p.A432A	TCP11L1_uc009yju.2_Silent_p.A247A|TCP11L1_uc010rei.1_Silent_p.A432A|TCP11L1_uc001mue.2_Silent_p.A432A|TCP11L1_uc001muf.1_RNA	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	432											0						AGGCCGTGGCCAGTCCCGATG	0.627													8	7					0	0	0.000274275	0	0
C11orf41	25758	broad.mit.edu	37	11	33564636	33564636	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:33564636G>T	uc001mup.3	+	1	760	c.636G>T	c.(634-636)CAG>CAT	p.Q212H	C11orf41_uc001mun.1_Missense_Mutation_p.Q212H	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	212						integral to membrane				ovary(2)	2						CTTTCCTCCAGCCCACAGAGA	0.567											OREG0020868	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	41					5.50884e-06	1.53813e-05	0.00136819	1	0
RAG1	5896	broad.mit.edu	37	11	36596622	36596622	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:36596622C>T	uc001mwu.3	+	2	1892	c.1768C>T	c.(1768-1770)CTG>TTG	p.L590L	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	590					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TGATGATTACCTGAATGGCCC	0.493									Familial_Hemophagocytic_Lymphohistiocytosis				4	21					0	0	0.00024832	0	0
RAG2	5897	broad.mit.edu	37	11	36615272	36615272	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:36615272C>T	uc001mwv.3	-	2	635	c.447G>A	c.(445-447)GGG>GGA	p.G149G	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	149					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				CCATACTTTTCCCTCGGCTGT	0.453									Familial_Hemophagocytic_Lymphohistiocytosis				18	88					0	0	0.00152264	0	0
TTC17	55761	broad.mit.edu	37	11	43421508	43421508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:43421508G>A	uc001mxi.2	+	9	1143	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K	TTC17_uc001mxh.2_Missense_Mutation_p.E377K|TTC17_uc010rfj.1_Missense_Mutation_p.E320K|TTC17_uc001mxj.2_Missense_Mutation_p.E147K	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	377							binding			ovary(5)	5						GAGACAGCAGGAAATCCTAGA	0.368													15	64					0	0	0.000422831	0	0
TP53I11	9537	broad.mit.edu	37	11	44959122	44959122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:44959122C>T	uc001myi.2	-	6	777	c.172G>A	c.(172-174)GAG>AAG	p.E58K	TP53I11_uc001myf.1_RNA|TP53I11_uc001myj.2_Missense_Mutation_p.E58K|TP53I11_uc001myk.2_Missense_Mutation_p.E58K|TP53I11_uc001myl.2_Missense_Mutation_p.E58K|TP53I11_uc001mym.2_Intron	NM_006034	NP_006025	O14683	P5I11_HUMAN	p53-induced protein	58	Cytoplasmic (Potential).				negative regulation of cell proliferation|response to stress	integral to membrane				ovary(1)	1						CCCAAAGGCTCCCGAATGGTA	0.577													4	17					0	0	0.00116845	0	0
ZNF408	79797	broad.mit.edu	37	11	46726799	46726799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:46726799C>T	uc001nde.1	+	5	1779	c.1549C>T	c.(1549-1551)CTC>TTC	p.L517F	ZNF408_uc010rgw.1_Missense_Mutation_p.L509F	NM_024741	NP_079017	Q9H9D4	ZN408_HUMAN	zinc finger protein 408	517	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding				0						GCATTTGCGGCTCCACACCGG	0.647													10	33					0	0	0.000978159	0	0
F2	2147	broad.mit.edu	37	11	46750952	46750952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:46750952G>A	uc001ndf.3	+	12	1538	c.1495G>A	c.(1495-1497)GGG>AGG	p.G499R	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	499	Peptidase S1.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	TGGATACAAGGGGCGGGTGAC	0.612													9	34					0	0	0.00185496	0	0
LRP4	4038	broad.mit.edu	37	11	46898047	46898048	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:46898047_46898048GG>AA	uc001ndn.3	-	25	3651_3652	c.3505_3506CC>TT	c.(3505-3507)CCC>TTC	p.P1169F		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1169	Extracellular (Potential).|LDL-receptor class B 12.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		GATGGCCCGGGGACTGTCAAGG	0.579													9	30					0	0	6.4e-05	0	0
MYBPC3	4607	broad.mit.edu	37	11	47354225	47354225	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:47354225C>T	uc001nfa.3	-	31	3574	c.3519G>A	c.(3517-3519)AAG>AAA	p.K1173K		NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	1172					cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		AGTCCAGGGCCTTATAGTTGG	0.612													3	6					0	0	6.4e-05	0	0
OR4X2	119764	broad.mit.edu	37	11	48266725	48266725	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:48266725C>T	uc001ngs.1	+	1	70	c.70C>T	c.(70-72)CTG>TTG	p.L24L		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	24	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTGATATTTCTGTTCTTGTA	0.448													11	49					0	0	0.000978159	0	0
OR4X1	390113	broad.mit.edu	37	11	48285545	48285545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:48285545G>A	uc010rht.1	+	1	133	c.133G>A	c.(133-135)GTG>ATG	p.V45M		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						CCTCATTGTGGTGACCATCCT	0.493													10	15					0	0	0.000442599	0	0
FOLH1	2346	broad.mit.edu	37	11	49208293	49208293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:49208293C>T	uc001ngy.2	-	5	803	c.542G>A	c.(541-543)CGA>CAA	p.R181Q	FOLH1_uc001ngz.2_Missense_Mutation_p.R181Q|FOLH1_uc009yly.2_Missense_Mutation_p.R166Q|FOLH1_uc009ylz.2_Missense_Mutation_p.R166Q|FOLH1_uc009yma.2_5'UTR	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	181	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	GTCTTCAGTTCGTGCATAGTT	0.383													22	75					0	0	0.00395357	0	0
OR4C13	283092	broad.mit.edu	37	11	49974424	49974424	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:49974424C>T	uc010rhz.1	+	1	450	c.450C>T	c.(448-450)GGC>GGT	p.G150G		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						GGGTAGGAGGCTTTCTTCATG	0.453													7	36					0	0	0.00307968	0	0
OR4C16	219428	broad.mit.edu	37	11	55340154	55340154	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:55340154A>T	uc010rih.1	+	1	551	c.551A>T	c.(550-552)AAA>ATA	p.K184I		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				CCCTTGTTGAAACAAGCCTGT	0.433													11	36					0	0	0.000978159	0	0
OR4S2	219431	broad.mit.edu	37	11	55418412	55418412	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:55418412T>C	uc001nhs.1	+	1	33	c.33T>C	c.(31-33)ATT>ATC	p.I11I		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				CTGAATTCATTTTCTGGGGTC	0.343													5	22					0	0	0.00198382	0	0
OR5D13	390142	broad.mit.edu	37	11	55541386	55541386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:55541386C>T	uc010ril.1	+	1	473	c.473C>T	c.(472-474)TCC>TTC	p.S158F		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				ATAGTGTGCTCCCTGATACTC	0.408													10	52					0	0	0.000673444	0	0
OR5D18	219438	broad.mit.edu	37	11	55587330	55587330	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:55587330C>T	uc010rin.1	+	1	225	c.225C>T	c.(223-225)TCC>TCT	p.S75S		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TCTGCTATTCCTCCATCATTG	0.403													24	109					0	0	0.00395357	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653632	55653632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:55653632G>A	uc010rip.1	+	3	537	c.445G>A	c.(445-447)GAA>AAA	p.E149K	SPRYD5_uc010riq.1_Missense_Mutation_p.E6K	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	149						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				GTCTTTATGGGAAAAAGCTTG	0.408													14	12					0	0	0.00244969	0	0
OR8H2	390151	broad.mit.edu	37	11	55873148	55873148	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:55873148C>T	uc010riy.1	+	1	630	c.630C>T	c.(628-630)TCC>TCT	p.S210S		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TGATGGTGTCCCTTTTCACAA	0.403										HNSCC(53;0.14)			9	56					0	0	0.000442599	0	0
OR5T2	219464	broad.mit.edu	37	11	55999650	55999650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:55999650C>T	uc010rjc.1	-	1	1012	c.1012G>A	c.(1012-1014)GAC>AAC	p.D338N		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	338	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTCATTGAGTCTTTTACATCT	0.333													14	45					0	0	0.00185496	0	0
OR5T2	219464	broad.mit.edu	37	11	55999843	55999843	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:55999843C>T	uc010rjc.1	-	1	819	c.819G>A	c.(817-819)AGG>AGA	p.R273R		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	273	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AGACTTTTCTCCTCCCTTCAG	0.438													23	36					0	0	0.00395357	0	0
OR9G4	283189	broad.mit.edu	37	11	56510580	56510580	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:56510580G>A	uc010rjo.1	-	1	708	c.708C>T	c.(706-708)ATC>ATT	p.I236I		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	236	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TAGCCAGGAGGATGTTGACAT	0.488													10	66					0	0	0.000673444	0	0
OR9G4	283189	broad.mit.edu	37	11	56511255	56511255	+	Silent	SNP	G	A	A	rs61735257	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:56511255G>A	uc010rjo.1	-	1	33	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCACGGAGGTGAAAGCCTGAC	0.413													27	50					0	0	0.0024448	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757090	56757090	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:56757090G>A	uc010rjp.1	+	1	702	c.702G>A	c.(700-702)AGG>AGA	p.R234R		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GTGCAGGAAGGAAAAAATCCT	0.423													16	44					0	0	0.00316338	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757188	56757188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:56757188C>T	uc010rjp.1	+	1	800	c.800C>T	c.(799-801)TCC>TTC	p.S267F		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TCTAATAATTCCCAGGAAAAT	0.363													7	39					0	0	0.000274275	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757201	56757201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:56757201G>A	uc010rjp.1	+	1	813	c.813G>A	c.(811-813)ATG>ATA	p.M271I		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AGGAAAATATGAAAGTGGCCT	0.358													6	41					0	0	0.00198382	0	0
LRRC55	219527	broad.mit.edu	37	11	56949697	56949697	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:56949697C>T	uc001njl.1	+	1	477	c.330C>T	c.(328-330)ACC>ACT	p.T110T		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	80	LRR 1.					integral to membrane					0						CAATGGACACCCGAAACCTCA	0.607													6	13					0	0	0.00307968	0	0
SSRP1	6749	broad.mit.edu	37	11	57100164	57100164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:57100164G>A	uc001njt.2	-	6	970	c.703C>T	c.(703-705)CCC>TCC	p.P235S	SSRP1_uc010rjq.1_Missense_Mutation_p.P235S	NM_003146	NP_003137	Q08945	SSRP1_HUMAN	structure specific recognition protein 1	235					DNA repair|DNA replication|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|cytoplasm|nucleoplasm	DNA binding|protein binding			ovary(2)	2						GTGGTGTAGGGGATCTTGTAG	0.522													6	20					0	0	0.00116845	0	0
CTNND1	1500	broad.mit.edu	37	11	57563996	57563996	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:57563996T>G	uc001nmc.3	+	6	1059	c.488T>G	c.(487-489)TTG>TGG	p.L163W	CTNND1_uc001nlf.1_Missense_Mutation_p.L163W|CTNND1_uc001nlh.1_Missense_Mutation_p.L163W|CTNND1_uc001nlu.3_Missense_Mutation_p.L62W|CTNND1_uc001nlt.3_Missense_Mutation_p.L62W|CTNND1_uc001nls.3_Missense_Mutation_p.L62W|CTNND1_uc001nlw.3_Missense_Mutation_p.L62W|CTNND1_uc001nmf.3_Missense_Mutation_p.L163W|CTNND1_uc001nmd.3_Missense_Mutation_p.L109W|CTNND1_uc001nlk.3_Missense_Mutation_p.L109W|CTNND1_uc001nme.3_Missense_Mutation_p.L163W|CTNND1_uc001nll.3_Missense_Mutation_p.L109W|CTNND1_uc001nmg.3_Missense_Mutation_p.L109W|CTNND1_uc001nlj.3_Missense_Mutation_p.L109W|CTNND1_uc001nlr.3_Missense_Mutation_p.L109W|CTNND1_uc001nlp.3_Missense_Mutation_p.L109W|CTNND1_uc001nlx.3_Intron|CTNND1_uc001nlz.3_Intron|CTNND1_uc009ymn.2_Intron|CTNND1_uc001nlm.3_Missense_Mutation_p.L163W|CTNND1_uc001nly.3_Intron|CTNND1_uc001nmb.3_Intron|CTNND1_uc001nma.3_Intron|CTNND1_uc001nmi.3_Missense_Mutation_p.L62W|CTNND1_uc001nmh.3_Missense_Mutation_p.L163W|CTNND1_uc001nlq.3_Missense_Mutation_p.L62W|CTNND1_uc001nln.3_Missense_Mutation_p.L163W|CTNND1_uc001nli.3_Missense_Mutation_p.L163W|CTNND1_uc001nlo.3_Missense_Mutation_p.L62W|CTNND1_uc001nlv.3_Missense_Mutation_p.L62W	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	163					adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				CCAGACGGGTTGCCTGTGGAT	0.473													12	28					0	0	0.000978159	0	0
CTNND1	1500	broad.mit.edu	37	11	57581797	57581797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:57581797C>T	uc001nmc.3	+	18	3224	c.2653C>T	c.(2653-2655)CGG>TGG	p.R885W	CTNND1_uc001nlh.1_Missense_Mutation_p.R885W|CTNND1_uc001nlu.3_Missense_Mutation_p.R778W|CTNND1_uc001nlt.3_Missense_Mutation_p.R778W|CTNND1_uc001nls.3_Intron|CTNND1_uc001nlw.3_Missense_Mutation_p.R778W|CTNND1_uc001nmf.3_Missense_Mutation_p.R885W|CTNND1_uc001nmd.3_Missense_Mutation_p.R831W|CTNND1_uc001nlk.3_Missense_Mutation_p.R831W|CTNND1_uc001nme.3_Missense_Mutation_p.R879W|CTNND1_uc001nll.3_Missense_Mutation_p.R825W|CTNND1_uc001nmg.3_Missense_Mutation_p.R825W|CTNND1_uc001nlj.3_Missense_Mutation_p.R825W|CTNND1_uc001nlr.3_Missense_Mutation_p.R825W|CTNND1_uc001nlp.3_Intron|CTNND1_uc001nlx.3_Missense_Mutation_p.R562W|CTNND1_uc001nlz.3_Missense_Mutation_p.R562W|CTNND1_uc009ymn.2_Missense_Mutation_p.R556W|CTNND1_uc001nlm.3_Missense_Mutation_p.R879W|CTNND1_uc001nly.3_Missense_Mutation_p.R556W|CTNND1_uc001nmb.3_Missense_Mutation_p.R556W|CTNND1_uc001nma.3_Intron|CTNND1_uc001nmi.3_Missense_Mutation_p.R784W|CTNND1_uc001nmh.3_Missense_Mutation_p.R879W|CTNND1_uc001nlq.3_Missense_Mutation_p.R784W|CTNND1_uc001nln.3_Missense_Mutation_p.R879W|CTNND1_uc001nli.3_Intron|CTNND1_uc001nlo.3_Missense_Mutation_p.R778W|CTNND1_uc001nlv.3_Missense_Mutation_p.R778W	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	885					adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				GAAACCTGATCGGGAAGAAAT	0.373													7	21					0	0	0.00198382	0	0
OR6Q1	219952	broad.mit.edu	37	11	57798742	57798742	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:57798742C>T	uc010rjz.1	+	1	318	c.318C>T	c.(316-318)TTC>TTT	p.F106F	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				CCCAGCTCTTCATCTTCACCT	0.483													14	59					0	0	0.00316338	0	0
OR1S2	219958	broad.mit.edu	37	11	57971349	57971349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:57971349C>T	uc010rkb.1	-	1	305	c.305G>A	c.(304-306)AGC>AAC	p.S102N		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	102	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GATGGATTGGCTGTTGGTTTG	0.448													12	43					0	0	0.000978159	0	0
OR1S1	219959	broad.mit.edu	37	11	57983146	57983146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:57983146G>A	uc010rkc.1	+	1	930	c.930G>A	c.(928-930)ATG>ATA	p.M310I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ATAAGGATATGAAAGGTGCCC	0.423													10	53					0	0	0.000978159	0	0
LPXN	9404	broad.mit.edu	37	11	58322362	58322362	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:58322362A>C	uc001nmw.2	-	4	415	c.270T>G	c.(268-270)GCT>GCG	p.A90A	LPXN_uc009ymp.2_5'UTR|LPXN_uc010rkj.1_Silent_p.A95A|LPXN_uc010rkk.1_Silent_p.A70A	NM_004811	NP_004802	O60711	LPXN_HUMAN	leupaxin isoform 2	90					cell adhesion|protein complex assembly|signal transduction	cytoplasm	zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				CCAACTGAGCAGCTGCTGACG	0.478													11	67					0	0	0.000978159	0	0
FAM111B	374393	broad.mit.edu	37	11	58892634	58892634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:58892634G>A	uc001nnl.2	+	4	1307	c.1064G>A	c.(1063-1065)CGA>CAA	p.R355Q	FAM111B_uc001nnm.2_Missense_Mutation_p.R325Q|FAM111B_uc010rko.1_Missense_Mutation_p.R325Q	NM_198947	NP_945185	Q6SJ93	F111B_HUMAN	hypothetical protein LOC374393 isoform a	355							catalytic activity			ovary(2)	2						AGTTTGCCCCGAAAATATAGG	0.398													15	67					0	0	0.000422831	0	0
FAM111A	63901	broad.mit.edu	37	11	58919785	58919785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:58919785C>T	uc010rkp.1	+	5	871	c.644C>T	c.(643-645)GCT>GTT	p.A215V	FAM111A_uc010rkq.1_Missense_Mutation_p.A215V|FAM111A_uc010rkr.1_Missense_Mutation_p.A215V|FAM111A_uc001nno.2_Missense_Mutation_p.A215V|FAM111A_uc001nnp.2_Missense_Mutation_p.A215V|FAM111A_uc001nnq.2_Missense_Mutation_p.A215V	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	215					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				TGTGTTTATGCTTTCAAAGGA	0.388													15	39					0	0	0.00316338	0	0
OR5A2	219981	broad.mit.edu	37	11	59189564	59189564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:59189564G>A	uc010rkt.1	-	1	863	c.863C>T	c.(862-864)CCC>CTC	p.P288L		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTAGATGATGGGATTCACCAC	0.463													4	11					0	0	0.00024832	0	0
OR5A1	219982	broad.mit.edu	37	11	59210928	59210928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:59210928C>T	uc001nnx.1	+	1	287	c.287C>T	c.(286-288)TCA>TTA	p.S96L		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						AAGACCATATCATTTGTGGGC	0.473													9	43					0	0	0.000442599	0	0
PLAC1L	219990	broad.mit.edu	37	11	59811097	59811097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:59811097C>T	uc001nol.2	+	2	405	c.220C>T	c.(220-222)CGT>TGT	p.R74C		NM_173801	NP_776162	Q86WS3	PLACL_HUMAN	placenta-specific 1-like precursor	74						extracellular region				ovary(2)|skin(1)	3						ATATCTTGTTCGTGATTGTGG	0.343													12	30					0	0	0.000978159	0	0
PLAC1L	219990	broad.mit.edu	37	11	59814475	59814475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:59814475C>T	uc001nol.2	+	4	591	c.406C>T	c.(406-408)CCT>TCT	p.P136S		NM_173801	NP_776162	Q86WS3	PLACL_HUMAN	placenta-specific 1-like precursor	136						extracellular region				ovary(2)|skin(1)	3						GGATCCTAGTCCTTTTATTGC	0.383													19	66					0	0	0.00121646	0	0
PLAC1L	219990	broad.mit.edu	37	11	59814515	59814515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:59814515G>A	uc001nol.2	+	4	631	c.446G>A	c.(445-447)GGA>GAA	p.G149E		NM_173801	NP_776162	Q86WS3	PLACL_HUMAN	placenta-specific 1-like precursor	149						extracellular region				ovary(2)|skin(1)	3						GAAGAGTTAGGATTATTATCT	0.358													12	66					0	0	0.00136819	0	0
MS4A6E	245802	broad.mit.edu	37	11	60107351	60107351	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:60107351C>T	uc001npd.2	+	3	381	c.367C>T	c.(367-369)CTG>TTG	p.L123L		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	123	Helical; (Potential).					integral to membrane	receptor activity				0						AACTCTGTCTCTGATGCTGGT	0.488													22	95					0	0	0.000720815	0	0
MS4A8B	83661	broad.mit.edu	37	11	60470892	60470892	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:60470892C>T	uc001npv.2	+	3	464	c.261C>T	c.(259-261)GGC>GGT	p.G87G	MS4A8B_uc009yne.1_Silent_p.G87G	NM_031457	NP_113645	Q9BY19	M4A8B_HUMAN	membrane-spanning 4-domains, subfamily A, member	87	Helical; (Potential).					integral to membrane	receptor activity				0						TCGGCCTCGGCTCCATCATGG	0.552													19	31					0	0	0.000958276	0	0
MS4A8B	83661	broad.mit.edu	37	11	60482806	60482806	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:60482806C>T	uc001npv.2	+	7	875	c.672C>T	c.(670-672)ATC>ATT	p.I224I		NM_031457	NP_113645	Q9BY19	M4A8B_HUMAN	membrane-spanning 4-domains, subfamily A, member	224	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						ATCCAAACATCTATGCAGCAA	0.512													5	29					0	0	0.00116845	0	0
ZP1	22917	broad.mit.edu	37	11	60642654	60642654	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:60642654C>T	uc001nqd.2	+	11	1727	c.1707C>T	c.(1705-1707)ATC>ATT	p.I569I	ZP1_uc001nqe.2_Silent_p.I276I	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	569	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						CCCAGGACATCGTGAGCTCTC	0.627													10	33					0	0	0.00136819	0	0
TMEM132A	54972	broad.mit.edu	37	11	60701052	60701052	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:60701052G>A	uc001nqj.2	+	8	1588	c.1395G>A	c.(1393-1395)AAG>AAA	p.K465K	TMEM132A_uc001nqi.2_Silent_p.K466K|TMEM132A_uc001nqk.2_Silent_p.K478K|TMEM132A_uc001nql.1_3'UTR|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	465	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						TGGCTGGCAAGGAGAGCCGGG	0.682													16	13					0	0	0.000958276	0	0
TMEM132A	54972	broad.mit.edu	37	11	60703676	60703676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:60703676C>T	uc001nqj.2	+	11	2562	c.2369C>T	c.(2368-2370)ACC>ATC	p.T790I	TMEM132A_uc001nqi.2_Missense_Mutation_p.T791I|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	790	Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						ACAGAAGCCACCATGGGTGGT	0.677													10	41					0	0	0.00136819	0	0
SLC15A3	51296	broad.mit.edu	37	11	60704703	60704703	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:60704703C>T	uc001nqn.2	-	8	1968	c.1734G>A	c.(1732-1734)AGG>AGA	p.R578R	SLC15A3_uc001nqo.2_3'UTR	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	578					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						AGCCCCTGTCCCTGCTGAAAC	0.597													6	14					0	0	0.00198382	0	0
PGA5	5222	broad.mit.edu	37	11	61017144	61017144	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:61017144C>T	uc001nqz.2	+	7	807	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_014224	NP_055039	P00790	PEPA_HUMAN	pepsinogen 5, group I precursor	259					digestion|proteolysis	extracellular region	aspartic-type endopeptidase activity			skin(1)	1						CCCTCAGCATCACCATGAACG	0.592													13	63					0	0	0.000422831	0	0
DDB1	1642	broad.mit.edu	37	11	61093105	61093105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:61093105G>A	uc001nrc.3	-	6	966	c.740C>T	c.(739-741)GCT>GTT	p.A247V	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.A247V|DDB1_uc010rlg.1_RNA|DDB1_uc001nrd.2_Missense_Mutation_p.A247V|DDB1_uc009ynl.1_Missense_Mutation_p.A134V	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	247	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						AGGGGCAATAGCCAGGTATTT	0.463								NER					8	28					0	0	0.000442599	0	0
CPSF7	79869	broad.mit.edu	37	11	61188022	61188022	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:61188022G>A	uc001nrq.2	-	4	431	c.297C>T	c.(295-297)ATC>ATT	p.I99I	CPSF7_uc001nro.2_Silent_p.I99I|CPSF7_uc001nrp.2_Silent_p.I142I|CPSF7_uc001nrr.2_Silent_p.I99I|CPSF7_uc001nrs.1_Silent_p.I9I	NM_001136040	NP_001129512	Q8N684	CPSF7_HUMAN	pre-mRNA cleavage factor I, 59 kDa subunit	99	RRM.				mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	mRNA cleavage factor complex	nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						GAATAACCTGGATCAGCTGCT	0.517													22	61					0	0	0.000720815	0	0
C11orf9	745	broad.mit.edu	37	11	61541529	61541529	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:61541529C>T	uc001nsc.1	+	8	1302	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F	C11orf9_uc001nse.1_Silent_p.F393F	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	402	NDT80.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						AGAACCACTTCCAGGTGACAG	0.612													7	22					0	0	0.000274275	0	0
FEN1	2237	broad.mit.edu	37	11	61563639	61563639	+	Missense_Mutation	SNP	C	T	T	rs138109450		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:61563639C>T	uc001nsg.2	+	2	1178	c.806C>T	c.(805-807)CCT>CTT	p.P269L		NM_004111	NP_004102	P39748	FEN1_HUMAN	flap structure-specific endonuclease 1	269					base-excision repair|DNA replication, removal of RNA primer|double-strand break repair|phosphatidylinositol-mediated signaling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|UV protection	mitochondrion|nucleolus|nucleoplasm	5'-3' exonuclease activity|5'-flap endonuclease activity|damaged DNA binding|double-stranded DNA binding|double-stranded DNA specific exodeoxyribonuclease activity|metal ion binding|protein binding|ribonuclease H activity			ovary(1)	1						AACAAGTACCCTGTGCCAGAA	0.572								Direct_reversal_of_damage|Editing_and_processing_nucleases					7	29					0	0	0.00198382	0	0
AHNAK	79026	broad.mit.edu	37	11	62285642	62285642	+	Missense_Mutation	SNP	G	A	A	rs116181632	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:62285642G>A	uc001ntl.2	-	5	16547	c.16247C>T	c.(16246-16248)CCG>CTG	p.P5416L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5416					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GTCGGACCCCGGAGTAGAGAT	0.537													10	38					0	0	0.000978159	0	0
SLC22A6	9356	broad.mit.edu	37	11	62748520	62748520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:62748520G>A	uc001nwk.2	-	6	1281	c.974C>T	c.(973-975)TCG>TTG	p.S325L	SLC22A6_uc001nwl.2_Missense_Mutation_p.S325L|SLC22A6_uc001nwj.2_Missense_Mutation_p.S325L|SLC22A6_uc001nwm.2_Missense_Mutation_p.S325L	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	325	Cytoplasmic (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						CTCCATGGCCGATGCCTGGCC	0.642													5	14					0	0	0.00198382	0	0
SLC22A6	9356	broad.mit.edu	37	11	62749455	62749455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:62749455C>T	uc001nwk.2	-	4	963	c.656G>A	c.(655-657)CGG>CAG	p.R219Q	SLC22A6_uc001nwl.2_Missense_Mutation_p.R219Q|SLC22A6_uc001nwj.2_Missense_Mutation_p.R219Q|SLC22A6_uc001nwm.2_Missense_Mutation_p.R219Q	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	219	Cytoplasmic (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						CACGCAGGCCCGTGTGTGAAT	0.607													8	8					0	0	0.00136819	0	0
SLC22A6	9356	broad.mit.edu	37	11	62752120	62752120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:62752120G>A	uc001nwk.2	-	1	350	c.43C>T	c.(43-45)CGC>TGC	p.R15C	SLC22A6_uc001nwl.2_Missense_Mutation_p.R15C|SLC22A6_uc001nwj.2_Missense_Mutation_p.R15C|SLC22A6_uc001nwm.2_Missense_Mutation_p.R15C	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	15	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						TGCTGGAAGCGGCCGACACCC	0.637													6	19					0	0	0.00307968	0	0
SLC22A10	387775	broad.mit.edu	37	11	63065041	63065041	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:63065041G>A	uc009yor.2	+	4	880	c.672G>A	c.(670-672)TGG>TGA	p.W224*	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	224	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						TTACTGAGTGGATAAGGCCCA	0.388													5	41					0	0	0.00116845	0	0
SLC22A9	114571	broad.mit.edu	37	11	63141414	63141414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:63141414G>A	uc001nww.2	+	4	978	c.710G>A	c.(709-711)GGA>GAA	p.G237E	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	237	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						ATTACATTGGGAATGTGCCCT	0.473													4	7					0	0	0.00024832	0	0
LGALS12	85329	broad.mit.edu	37	11	63277347	63277347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:63277347C>T	uc001nxa.2	+	4	877	c.536C>T	c.(535-537)GCT>GTT	p.A179V	LGALS12_uc001nxb.2_Missense_Mutation_p.A179V|LGALS12_uc001nxc.2_Missense_Mutation_p.A180V|LGALS12_uc001nxd.2_Missense_Mutation_p.A118V|LGALS12_uc001nxe.2_Missense_Mutation_p.A118V|LGALS12_uc009yot.2_Missense_Mutation_p.A139V	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	179	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						CTGGTAGAGGCTGTTGGATTC	0.552													7	42					0	0	0.00307968	0	0
CCDC88B	283234	broad.mit.edu	37	11	64109113	64109113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:64109113C>T	uc001nzy.2	+	7	618	c.574C>T	c.(574-576)CCA>TCA	p.P192S	CCDC88B_uc009ypo.1_Missense_Mutation_p.P189S|CCDC88B_uc001nzz.1_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	192					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						ACTGTCTGGGCCAGATCCTGG	0.697													5	22					0	0	0.00116845	0	0
SLC22A11	55867	broad.mit.edu	37	11	64326684	64326684	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:64326684C>T	uc001oai.2	+	2	845	c.471C>T	c.(469-471)TCC>TCT	p.S157S	SLC22A11_uc001oah.1_Intron|SLC22A11_uc001oaj.2_Silent_p.S157S|SLC22A11_uc009ypq.2_Silent_p.S157S|SLC22A11_uc001oak.1_5'Flank	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	157	Helical; (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	TGGTGGGCTCCTTTATCTGGG	0.602													4	26					0	0	0.00024832	0	0
SLC22A11	55867	broad.mit.edu	37	11	64329576	64329576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:64329576C>T	uc001oai.2	+	3	972	c.598C>T	c.(598-600)CGG>TGG	p.R200W	SLC22A11_uc001oah.1_Missense_Mutation_p.A165V|SLC22A11_uc001oaj.2_Missense_Mutation_p.R200W|SLC22A11_uc009ypq.2_Missense_Mutation_p.R200W|SLC22A11_uc001oak.1_Missense_Mutation_p.R29W	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	200	Extracellular (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	CTGCGGCCTGCGGTTCGTGGC	0.647											OREG0004030	type=REGULATORY REGION|Gene=SLC22A11|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	28					0	0	0.000442599	0	0
SLC22A12	116085	broad.mit.edu	37	11	64368231	64368231	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:64368231G>A	uc001oam.1	+	9	2166	c.1419G>A	c.(1417-1419)CAG>CAA	p.Q473Q	SLC22A12_uc001oal.1_Silent_p.Q252Q|SLC22A12_uc009yps.1_Silent_p.Q439Q|SLC22A12_uc001oan.1_Silent_p.Q365Q|SLC22A12_uc009ypt.2_Silent_p.Q291Q	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	473	Helical; (Potential).				cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GCTTGGGCCAGATGGCAGCCC	0.672													11	23					0	0	0.000978159	0	0
SF1	7536	broad.mit.edu	37	11	64535187	64535187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:64535187G>A	uc001obb.1	-	10	1575	c.1198C>T	c.(1198-1200)CCA>TCA	p.P400S	SF1_uc010rnm.1_Missense_Mutation_p.P92S|SF1_uc010rnn.1_Missense_Mutation_p.P374S|SF1_uc001oaz.1_Missense_Mutation_p.P525S|SF1_uc001oba.1_Missense_Mutation_p.P400S|SF1_uc001obc.1_Missense_Mutation_p.P400S|SF1_uc001obd.1_Missense_Mutation_p.P400S|SF1_uc001obe.1_Missense_Mutation_p.P285S|SF1_uc010rno.1_Missense_Mutation_p.P285S	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	400	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						CTGGGTAATGGGTGTGGGAAG	0.632											OREG0004010|OREG0021062	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)|type=REGULATORY REGION|Gene=LOC476031|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	6	17					0	0	0.00198382	0	0
MEN1	4221	broad.mit.edu	37	11	64573220	64573220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:64573220C>T	uc001obj.2	-	8	1160	c.1087G>A	c.(1087-1089)GAG>AAG	p.E363K	MAP4K2_uc001obh.2_5'Flank|MAP4K2_uc001obi.2_5'Flank|MAP4K2_uc010rnp.1_5'Flank|MEN1_uc001obk.2_Missense_Mutation_p.E363K|MEN1_uc001obl.2_Missense_Mutation_p.E323K|MEN1_uc001obm.2_Missense_Mutation_p.E358K|MEN1_uc001obn.2_Missense_Mutation_p.E363K|MEN1_uc001obo.2_Missense_Mutation_p.E363K|MEN1_uc001obp.2_Missense_Mutation_p.E358K|MEN1_uc001obq.2_Missense_Mutation_p.E363K|MEN1_uc001obr.2_Missense_Mutation_p.E363K	NM_130800	NP_570712	O00255	MEN1_HUMAN	menin isoform 1	363	Interaction with FANCD2.				DNA repair|histone lysine methylation|MAPKKK cascade|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of JNK cascade|negative regulation of osteoblast differentiation|negative regulation of protein phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of telomerase activity|negative regulation of transcription from RNA polymerase II promoter|osteoblast development|positive regulation of protein binding|positive regulation of transforming growth factor beta receptor signaling pathway|response to gamma radiation|response to UV|transcription, DNA-dependent	chromatin|cleavage furrow|cytosol|histone methyltransferase complex|nuclear matrix|soluble fraction	double-stranded DNA binding|four-way junction DNA binding|protein binding, bridging|protein N-terminus binding|R-SMAD binding|transcription regulatory region DNA binding|Y-form DNA binding			parathyroid(105)|pancreas(64)|gastrointestinal_tract_(site_indeterminate)(15)|small_intestine(13)|lung(9)|pituitary(7)|NS(7)|adrenal_gland(5)|soft_tissue(4)|central_nervous_system(4)|thymus(2)|stomach(1)|retroperitoneum(1)|skin(1)	238						TAGATCTCCTCGTCTTCCCGG	0.612			D|Mis|N|F|S		parathyroid tumors|Pancreatic neuroendocrine tumors	parathyroid adenoma|pituitary adenoma|pancreatic islet cell|carcinoid			Hyperparathyroidism_Familial_Isolated|Multiple_Endocrine_Neoplasia_type_1				19	54					0	0	0.00278032	0	0
ATG2A	23130	broad.mit.edu	37	11	64665342	64665342	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:64665342A>G	uc001obx.2	-	35	5078	c.4963T>C	c.(4963-4965)TCC>CCC	p.S1655P	ATG2A_uc001obw.2_Missense_Mutation_p.S420P	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1655							protein binding			ovary(1)|central_nervous_system(1)	2						TCAGGAGGGGAGGGGCTGTGT	0.682													4	15					0	0	0.00024832	0	0
ATG2A	23130	broad.mit.edu	37	11	64678105	64678105	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:64678105G>A	uc001obx.2	-	12	1805	c.1690C>T	c.(1690-1692)CTG>TTG	p.L564L		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	564							protein binding			ovary(1)|central_nervous_system(1)	2						ACACGGCGCAGGATCTGTGTG	0.682													3	5					0	0	6.4e-05	0	0
MALAT1	378938	broad.mit.edu	37	11	65272561	65272561	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:65272561C>T	uc010roh.1	+	1		c.7329C>T			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GAATAGATTTCAGCTTTATGC	0.418													11	54					0	0	0.00316338	0	0
SART1	9092	broad.mit.edu	37	11	65729299	65729299	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:65729299G>A	uc001ogl.2	+	1	140	c.48G>A	c.(46-48)ACG>ACA	p.T16T	SART1_uc009yqy.1_Silent_p.T16T|SART1_uc010rot.1_5'UTR	NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	16					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						cggccgggacgacggcggcgg	0.264													6	13					0	0	0.00198382	0	0
SART1	9092	broad.mit.edu	37	11	65732612	65732612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:65732612G>A	uc001ogl.2	+	4	569	c.477G>A	c.(475-477)ATG>ATA	p.M159I	SART1_uc010rot.1_Missense_Mutation_p.M1I	NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	159	Potential.				cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						TCAACCCTATGGCCTTGCGAC	0.662													4	33					0	0	0.00024832	0	0
SF3B2	10992	broad.mit.edu	37	11	65828151	65828151	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:65828151C>T	uc001ogy.1	+	14	1768	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	576					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						ATGCCTTCTTCAAGTGGCAGA	0.517													17	65					0	0	0.00188189	0	0
ZDHHC24	254359	broad.mit.edu	37	11	66307075	66307075	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:66307075G>A	uc001oin.1	-	3	977	c.780C>T	c.(778-780)CCC>CCT	p.P260P	ZDHHC24_uc001oim.1_Intron|ZDHHC24_uc009yrg.1_Intron	NM_207340	NP_997223	Q6UX98	ZDH24_HUMAN	zinc finger, DHHC-type containing 24	260						integral to membrane	acyltransferase activity|zinc ion binding				0						AGGCCAGGAAGGGCCAGAGCC	0.662													8	17					0	0	0.000274275	0	0
SPTBN2	6712	broad.mit.edu	37	11	66456164	66456164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:66456164G>A	uc001ojd.2	-	30	6263	c.6191C>T	c.(6190-6192)GCC>GTC	p.A2064V	SPTBN2_uc001ojc.1_5'Flank	NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	2064	Spectrin 17.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CTCCTCCCAGGCCACTGCTGA	0.632													5	15					0	0	0.000602214	0	0
SPTBN2	6712	broad.mit.edu	37	11	66473164	66473164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:66473164G>A	uc001ojd.2	-	13	1870	c.1798C>T	c.(1798-1800)CCA>TCA	p.P600S		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	600	Spectrin 3.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCTTTCCCTGGGTTGCAGAAG	0.662													4	14					0	0	0.000602214	0	0
KDM2A	22992	broad.mit.edu	37	11	67015803	67015803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:67015803C>T	uc001ojw.2	+	16	2881	c.2017C>T	c.(2017-2019)CCA>TCA	p.P673S	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Missense_Mutation_p.P367S|KDM2A_uc010rpn.1_Missense_Mutation_p.P234S|KDM2A_uc001ojz.1_Missense_Mutation_p.P131S	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	673	PHD-type.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						CTGGGAATGTCCAAAGTGCTA	0.468													6	10					0	0	0.00307968	0	0
SSH3	54961	broad.mit.edu	37	11	67075683	67075683	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:67075683C>T	uc001okj.2	+	9	1102	c.924C>T	c.(922-924)CTC>CTT	p.L308L	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Silent_p.L162L	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	308					regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GGCTCCCCCTCCAGCAGTACC	0.652													11	33					0	0	0.00136819	0	0
CORO1B	57175	broad.mit.edu	37	11	67205905	67205906	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:67205905_67205906CC>AT	uc001olj.1	-	10	1447_1448	c.1411_1412GG>AT	c.(1411-1413)GGC>ATC	p.G471I	PTPRCAP_uc001oli.1_5'Flank|CORO1B_uc009yrs.1_RNA|CORO1B_uc001olk.1_Missense_Mutation_p.G471I|CORO1B_uc009yrt.1_RNA|CORO1B_uc009yru.1_RNA|CORO1B_uc001oll.1_Missense_Mutation_p.G471I	NM_020441	NP_065174	Q9BR76	COR1B_HUMAN	coronin, actin binding protein, 1B	471	Potential.				actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin filament binding			large_intestine(1)|ovary(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			GATGCGGTCGCCCTGCTCCTTG	0.693													5	28					0	0	6.4e-05	0	0
CORO1B	57175	broad.mit.edu	37	11	67207678	67207678	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:67207678G>A	uc001olj.1	-	7	954	c.918C>T	c.(916-918)TTC>TTT	p.F306F	PTPRCAP_uc001oli.1_5'Flank|CORO1B_uc009yrs.1_RNA|CORO1B_uc001olk.1_Silent_p.F306F|CORO1B_uc009yrt.1_RNA|CORO1B_uc009yru.1_RNA|CORO1B_uc001oll.1_Silent_p.F306F	NM_020441	NP_065174	Q9BR76	COR1B_HUMAN	coronin, actin binding protein, 1B	306					actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin filament binding			large_intestine(1)|ovary(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			ACGTGTTCAGGAAGTGGATGT	0.632													10	23					0	0	0.000978159	0	0
PITPNM1	9600	broad.mit.edu	37	11	67269420	67269420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:67269420G>A	uc001olx.2	-	4	742	c.553C>T	c.(553-555)CCC>TCC	p.P185S	PITPNM1_uc001oly.2_Missense_Mutation_p.P185S|PITPNM1_uc001olz.2_Missense_Mutation_p.P185S	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	185					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						CACATAAGGGGCCCCGTCTGT	0.587													4	17					0	0	0.000602214	0	0
PITPNM1	9600	broad.mit.edu	37	11	67270061	67270061	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:67270061G>A	uc001olx.2	-	2	396	c.207C>T	c.(205-207)ATC>ATT	p.I69I	PITPNM1_uc001oly.2_Silent_p.I69I|PITPNM1_uc001olz.2_Silent_p.I69I	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	69					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						ACCAGCCTGGGATGTGGGAGC	0.657													6	31					0	0	0.00116845	0	0
C11orf24	53838	broad.mit.edu	37	11	68029160	68029160	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:68029160G>A	uc001onr.3	-	4	1745	c.1303C>T	c.(1303-1305)CAG>TAG	p.Q435*	C11orf24_uc001ons.2_Silent_p.P394P	NM_022338	NP_071733	Q96F05	CK024_HUMAN	hypothetical protein LOC53838 precursor	435	Cytoplasmic (Potential).					integral to membrane					0						TAGTCCACCTGGGTGTAGTCC	0.557													9	38					0	0	0.000673444	0	0
MTL5	9633	broad.mit.edu	37	11	68478377	68478377	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:68478377C>G	uc001ooc.2	-	9	1439	c.1299G>C	c.(1297-1299)ACG>ACC	p.T433T		NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	433					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			CTGAAAATTTCGTTGGTGGCA	0.423													7	32					0	0	0.00198382	0	0
PPFIA1	8500	broad.mit.edu	37	11	70194463	70194463	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:70194463C>T	uc001opo.2	+	16	2298	c.2100C>T	c.(2098-2100)TCC>TCT	p.S700S	PPFIA1_uc001opn.1_Silent_p.S700S|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	700					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			GTGGGCGCTCCACCCCACGAA	0.597													13	78					0	0	0.000566183	0	0
PPFIA1	8500	broad.mit.edu	37	11	70208401	70208401	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:70208401T>C	uc001opo.2	+	21	2870	c.2672T>C	c.(2671-2673)GTT>GCT	p.V891A	PPFIA1_uc001opn.1_Missense_Mutation_p.V891A|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opr.2_5'UTR	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	891	SAM 1.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			CAGCTCTGGGTTGGGATGCCA	0.562													8	27					0	0	0.000442599	0	0
SHANK2	22941	broad.mit.edu	37	11	70333413	70333413	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:70333413G>A	uc001oqc.2	-	21	3063	c.2985C>T	c.(2983-2985)ATC>ATT	p.I995I	SHANK2_uc010rqn.1_Silent_p.I407I|SHANK2_uc001opz.2_Silent_p.I400I|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	616					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CTTTGCTGGCGATCTTCCCCA	0.607													18	66					0	0	0.00121646	0	0
RNF121	55298	broad.mit.edu	37	11	71693837	71693837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:71693837C>T	uc001ora.2	+	4	614	c.274C>T	c.(274-276)CCC>TCC	p.P92S	RNF121_uc001ord.2_Missense_Mutation_p.P11S|RNF121_uc001orb.2_Missense_Mutation_p.P60S|RNF121_uc009yst.2_Missense_Mutation_p.P60S	NM_018320	NP_060790	Q9H920	RN121_HUMAN	ring finger protein 121	92	Helical; (Potential).					integral to membrane	zinc ion binding				0						GTGGGTTGTTCCCCTCTATTT	0.517													17	71					0	0	0.00121646	0	0
FCHSD2	9873	broad.mit.edu	37	11	72632879	72632880	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:72632879_72632880GG>TT	uc009ytl.2	-	9	1042_1043	c.821_822CC>AA	c.(820-822)TCC>TAA	p.S274*	FCHSD2_uc010rrg.1_Nonsense_Mutation_p.S114*|FCHSD2_uc001oth.3_Nonsense_Mutation_p.S218*|FCHSD2_uc001oti.2_Nonsense_Mutation_p.S233*	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	274							protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			TTACCTTGCTGGAGTTTTCTAA	0.371													11	320					0	0	6.4e-05	0	0
P2RY2	5029	broad.mit.edu	37	11	72945942	72945942	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:72945942C>T	uc001otj.2	+	3	1071	c.738C>T	c.(736-738)ACC>ACT	p.T246T	P2RY2_uc001otk.2_Silent_p.T246T|P2RY2_uc001otl.2_Silent_p.T246T	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	246	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	CCGTGCGCACCATCGCCGTGG	0.637													5	31					0	0	0.00307968	0	0
POLD3	10714	broad.mit.edu	37	11	74323981	74323981	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:74323981C>T	uc001ovf.1	+	5	393	c.318C>T	c.(316-318)GCC>GCT	p.A106A	POLD3_uc009yua.1_5'UTR	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	106					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					TCCAGAAAGCCATGCTAAAGG	0.448													28	35					0	0	0.00127121	0	0
MAP6	4135	broad.mit.edu	37	11	75298370	75298370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:75298370C>T	uc001owu.2	-	4	2241	c.2176G>A	c.(2176-2178)GAT>AAT	p.D726N		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	726	Pro-rich.					Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					GGGCCTTGATCCTTAACTAGT	0.498													21	94					0	0	0.00188189	0	0
C11orf30	56946	broad.mit.edu	37	11	76255614	76255615	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:76255614_76255615CC>TT	uc001oxl.2	+	19	3164_3165	c.3021_3022CC>TT	c.(3019-3024)CTCCAG>CTTTAG	p.Q1008*	C11orf30_uc001oxm.2_Nonsense_Mutation_p.Q910*|C11orf30_uc010rsb.1_Nonsense_Mutation_p.Q1023*|C11orf30_uc010rsc.1_Nonsense_Mutation_p.Q1009*|C11orf30_uc001oxn.2_Nonsense_Mutation_p.Q1009*|C11orf30_uc010rsd.1_Nonsense_Mutation_p.Q917*|C11orf30_uc001oxo.1_Nonsense_Mutation_p.Q362*|C11orf30_uc010rse.1_Nonsense_Mutation_p.Q255*|C11orf30_uc001oxp.2_Nonsense_Mutation_p.Q108*	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	1008	Gln-rich.				chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						TCACCCCTCTCCAGCAAGAACA	0.554													10	37					0	0	6.4e-05	0	0
ODZ4	26011	broad.mit.edu	37	11	78380703	78380703	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:78380703C>T	uc001ozl.3	-	32	7150	c.6687G>A	c.(6685-6687)GGG>GGA	p.G2229G	ODZ4_uc001ozk.3_Silent_p.G454G|ODZ4_uc009yvb.1_Silent_p.G813G	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2229	Extracellular (Potential).|YD 19.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTGCACTGTTCCCAGGGCTCA	0.567													31	44					0	0	0.0024448	0	0
ODZ4	26011	broad.mit.edu	37	11	78423526	78423526	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:78423526C>T	uc001ozl.3	-	26	4517	c.4054_splice	c.e26+1	p.G1352_splice		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4						signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CAAGGCCTTACCCCTGGGATT	0.443													11	34					0	0	0.000673444	0	0
ODZ4	26011	broad.mit.edu	37	11	78437243	78437243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:78437243G>A	uc001ozl.3	-	23	3894	c.3431C>T	c.(3430-3432)TCC>TTC	p.S1144F		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1144	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATCTGGGCAGGATTCATATTC	0.468													24	121					0	0	0.00106085	0	0
ODZ4	26011	broad.mit.edu	37	11	78440676	78440676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:78440676C>T	uc001ozl.3	-	22	3614	c.3151G>A	c.(3151-3153)GAA>AAA	p.E1051K		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1051	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATAGAGATTTCCTCCTGCAAA	0.582													14	40					0	0	0.000566183	0	0
SYTL2	54843	broad.mit.edu	37	11	85420375	85420375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:85420375G>A	uc010rth.1	-	12	2275	c.1999C>T	c.(1999-2001)CCA>TCA	p.P667S	SYTL2_uc010rtg.1_Missense_Mutation_p.P668S|SYTL2_uc010rti.1_Missense_Mutation_p.P643S|SYTL2_uc010rtj.1_Missense_Mutation_p.P635S|SYTL2_uc001pav.2_Missense_Mutation_p.P109S|SYTL2_uc010rte.1_Missense_Mutation_p.P69S|SYTL2_uc001pax.2_Missense_Mutation_p.P109S|SYTL2_uc001paz.2_5'UTR|SYTL2_uc001pba.2_Missense_Mutation_p.P52S|SYTL2_uc001pay.2_Missense_Mutation_p.P98S|SYTL2_uc001paw.2_Missense_Mutation_p.P69S|SYTL2_uc009yvj.2_RNA|SYTL2_uc001pbd.2_Missense_Mutation_p.P965S|SYTL2_uc001pbb.2_Missense_Mutation_p.P1005S|SYTL2_uc001pbc.2_Missense_Mutation_p.P989S|SYTL2_uc010rtf.1_Missense_Mutation_p.P485S	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	667	C2 1.				intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		TGTACTTACGGGTCTGAACGC	0.418													36	72					0	0	0.00195071	0	0
FZD4	8322	broad.mit.edu	37	11	86662310	86662310	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:86662310C>A	uc001pce.2	-	2	1794	c.1488G>T	c.(1486-1488)TGG>TGT	p.W496C	PRSS23_uc001pcc.1_RNA	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	496	Helical; Name=7; (Potential).				canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTTTGGCAGACCAAATCCACA	0.428													11	36					9.70103e-10	2.71734e-09	0.000673444	1	0
GRM5	2915	broad.mit.edu	37	11	88780834	88780834	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:88780834C>T	uc001pcq.2	-	1	407	c.207G>A	c.(205-207)GTG>GTA	p.V69V	GRM5_uc009yvm.2_Silent_p.V69V|GRM5_uc009yvn.1_Silent_p.V69V	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	69	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	GCATGGCCTCCACTCTCTGAA	0.517													6	12					0	0	0.00116845	0	0
NAALAD2	10003	broad.mit.edu	37	11	89891372	89891372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:89891372C>T	uc001pdf.3	+	7	965	c.856C>T	c.(856-858)CCC>TCC	p.P286S	NAALAD2_uc009yvx.2_Missense_Mutation_p.P286S|NAALAD2_uc009yvy.2_Intron|NAALAD2_uc001pdd.2_Missense_Mutation_p.P286S|NAALAD2_uc001pde.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	286	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				ACCTGTACATCCCATTGGATA	0.299													26	120					0	0	0.00178596	0	0
NAALAD2	10003	broad.mit.edu	37	11	89909193	89909193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:89909193G>A	uc001pdf.3	+	15	1665	c.1556G>A	c.(1555-1557)GGA>GAA	p.G519E	NAALAD2_uc009yvx.2_Missense_Mutation_p.G486E|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	519	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				CAGAGACTTGGAATTGCTTCA	0.318													13	47					0	0	0.000566183	0	0
FAT3	120114	broad.mit.edu	37	11	92085467	92085467	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:92085467C>G	uc001pdj.3	+	1	206	c.189C>G	c.(187-189)AAC>AAG	p.N63K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	63	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCTACGTCAACAGCCAGAGTA	0.493										TCGA Ovarian(4;0.039)			33	136					0	0	0.000814825	0	0
FAT3	120114	broad.mit.edu	37	11	92085901	92085901	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:92085901C>G	uc001pdj.3	+	1	640	c.623C>G	c.(622-624)CCC>CGC	p.P208R		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	208	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCAGTTCACCCCACGAGTGGT	0.398										TCGA Ovarian(4;0.039)			5	215					0	0	0.00198382	0	0
FAT3	120114	broad.mit.edu	37	11	92086197	92086197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:92086197G>A	uc001pdj.3	+	1	936	c.919G>A	c.(919-921)GAT>AAT	p.D307N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	307	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGTGGCTGGGGATCCTTTAGA	0.448										TCGA Ovarian(4;0.039)			34	155					0	0	0.00375469	0	0
FAT3	120114	broad.mit.edu	37	11	92543147	92543147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:92543147C>T	uc001pdj.3	+	12	9403	c.9386C>T	c.(9385-9387)CCT>CTT	p.P3129L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3129	Cadherin 28.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GATAACCCCCCTGTGTTTTCT	0.542										TCGA Ovarian(4;0.039)			23	136					0	0	0.000720815	0	0
FAT3	120114	broad.mit.edu	37	11	92570934	92570934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:92570934C>T	uc001pdj.3	+	16	10347	c.10330C>T	c.(10330-10332)CCG>TCG	p.P3444S	FAT3_uc001pdi.3_5'Flank	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3444	Extracellular (Potential).|Cadherin 31.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGACAACAGCCCGGTGTTTAC	0.468										TCGA Ovarian(4;0.039)			57	200					0	0	0.00361006	0	0
FAT3	120114	broad.mit.edu	37	11	92600363	92600363	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:92600363C>T	uc001pdj.3	+	21	12132	c.12115C>T	c.(12115-12117)CTG>TTG	p.L4039L	FAT3_uc001pdi.3_Silent_p.L479L	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4039	EGF-like 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CTGCACTGGCCTGCCATCGGG	0.682										TCGA Ovarian(4;0.039)			6	6					0	0	0.00307968	0	0
FAT3	120114	broad.mit.edu	37	11	92613902	92613902	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:92613902C>T	uc001pdj.3	+	22	12150	c.12133C>T	c.(12133-12135)CAG>TAG	p.Q4045*	FAT3_uc001pdi.3_Nonsense_Mutation_p.Q485*	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4045	EGF-like 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCCAGGCTATCAGTGTACCTG	0.502										TCGA Ovarian(4;0.039)			31	128					0	0	0.000814825	0	0
CCDC67	159989	broad.mit.edu	37	11	93088705	93088705	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:93088705A>T	uc001pdq.2	+	3	298	c.198A>T	c.(196-198)CAA>CAT	p.Q66H	CCDC67_uc001pdo.1_Missense_Mutation_p.Q66H|CCDC67_uc001pdp.2_Missense_Mutation_p.Q66H	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	66										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				AGAAAGGTCAAGAGGTACTGA	0.338													7	34					0	0	0.00198382	0	0
CCDC67	159989	broad.mit.edu	37	11	93127654	93127654	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:93127654G>A	uc001pdq.2	+	10	1171	c.1071G>A	c.(1069-1071)GAG>GAA	p.E357E	CCDC67_uc001pdo.1_Silent_p.E357E|CCDC67_uc001pdp.2_Silent_p.E357E	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	357	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				AGGTGGAAGAGTACCATAACT	0.383													3	13					0	0	0.00024832	0	0
HEPHL1	341208	broad.mit.edu	37	11	93796841	93796841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:93796841G>A	uc001pep.2	+	3	740	c.583G>A	c.(583-585)GAC>AAC	p.D195N		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	195	Plastocyanin-like 1.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CGCCCCAAAGGACATCTGCTC	0.527													5	18					0	0	0.00307968	0	0
AMOTL1	154810	broad.mit.edu	37	11	94533298	94533298	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:94533298C>T	uc001pfb.2	+	3	1112	c.942C>T	c.(940-942)CCC>CCT	p.P314P	AMOTL1_uc001pfc.2_Silent_p.P264P	NM_130847	NP_570899	Q8IY63	AMOL1_HUMAN	angiomotin like 1	314						cytoplasm|tight junction	identical protein binding			ovary(1)|breast(1)	2		Acute lymphoblastic leukemia(157;2.38e-05)|all_hematologic(158;0.00824)				CTGAGTACCCCTTCAAGACCA	0.597													14	36					0	0	0.00316338	0	0
CNTN5	53942	broad.mit.edu	37	11	100211308	100211308	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:100211308C>T	uc001pga.2	+	22	3183	c.2844C>T	c.(2842-2844)TTC>TTT	p.F948F	CNTN5_uc001pgb.2_Silent_p.F874F|CNTN5_uc010ruk.1_Silent_p.F219F	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	948	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TATATCACTTCACAGTGAGGG	0.438													7	14					0	0	0.00307968	0	0
KIAA1377	57562	broad.mit.edu	37	11	101834449	101834449	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:101834449A>C	uc001pgm.2	+	6	2953	c.2683A>C	c.(2683-2685)ACT>CCT	p.T895P	KIAA1377_uc001pgn.2_Missense_Mutation_p.T851P|KIAA1377_uc010run.1_Missense_Mutation_p.T696P|KIAA1377_uc009yxa.1_Missense_Mutation_p.T696P	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	895							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		TTCAAATGGCACTCAAGCAGT	0.418													16	54					0	0	0.00316338	0	0
C11orf70	85016	broad.mit.edu	37	11	101946667	101946667	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:101946667C>T	uc001pgp.2	+	5	527	c.499C>T	c.(499-501)CTG>TTG	p.L167L	C11orf70_uc001pgo.2_3'UTR|C11orf70_uc001pgq.2_Silent_p.L129L	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	167										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		AGAAGAGTTCCTGTTTTGTCT	0.358													12	82					0	0	0.00185496	0	0
MMP3	4314	broad.mit.edu	37	11	102711167	102711167	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:102711167G>A	uc001phj.1	-	5	848	c.783C>T	c.(781-783)TCC>TCT	p.S261S		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	261					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	CACCATAGAGGGACTGAATGC	0.418													12	31					0	0	0.000422831	0	0
MMP3	4314	broad.mit.edu	37	11	102712940	102712940	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:102712940C>T	uc001phj.1	-	4	635	c.570G>A	c.(568-570)GGG>GGA	p.G190G		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	190		Calcium 2; via carbonyl oxygen.			collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	CTCCATTAATCCCTGGCCCAG	0.383													8	31					0	0	0.000274275	0	0
MMP13	4322	broad.mit.edu	37	11	102822831	102822831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:102822831C>T	uc001phl.2	-	5	737	c.709G>A	c.(709-711)GGA>AGA	p.G237R		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	237					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		ATGAGTGCTCCAGGGTCCTTG	0.463													12	63					0	0	0.000978159	0	0
DDI1	414301	broad.mit.edu	37	11	103908115	103908115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:103908115G>A	uc001phr.2	+	1	808	c.565G>A	c.(565-567)GAA>AAA	p.E189K	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	189					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		GCAGCAAAGGGAAAAGGCCTT	0.557													12	34					0	0	0.00136819	0	0
DDI1	414301	broad.mit.edu	37	11	103908641	103908641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:103908641G>A	uc001phr.2	+	1	1334	c.1091G>A	c.(1090-1092)GGA>GAA	p.G364E	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	364					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		CTTCCTGAGGGAGAGTTGCCC	0.458													12	70					0	0	0.000978159	0	0
CARD17	440068	broad.mit.edu	37	11	104971442	104971442	+	Silent	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:104971442G>C	uc001pir.1	-	2	89	c.72C>G	c.(70-72)GGC>GGG	p.G24G	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron	NM_001007232	NP_001007233	Q5XLA6	CAR17_HUMAN	caspase recruitment domain family, member 17	24	CARD.				proteolysis|regulation of apoptosis	cytoplasm	cysteine-type endopeptidase activity|cysteine-type endopeptidase inhibitor activity			ovary(1)	1						CACCCAGTAAGCCATTTATTG	0.433													9	47					0	0	0.000274275	0	0
GRIA4	2893	broad.mit.edu	37	11	105775927	105775927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:105775927G>A	uc001pix.2	+	9	1504	c.1058G>A	c.(1057-1059)CGA>CAA	p.R353Q	GRIA4_uc001piu.1_Missense_Mutation_p.R353Q|GRIA4_uc001piw.2_Missense_Mutation_p.R353Q|GRIA4_uc009yxk.1_Missense_Mutation_p.R353Q	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	353	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	ACTTAGGTTCGAATTCAAGGG	0.383													13	65					0	0	0.000566183	0	0
GRIA4	2893	broad.mit.edu	37	11	105789468	105789468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:105789468C>T	uc001pix.2	+	11	1746	c.1300C>T	c.(1300-1302)CAT>TAT	p.H434Y	GRIA4_uc001piw.2_Missense_Mutation_p.H434Y	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	434	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	CAAGAAAAATCATGAAATGTT	0.299													8	6					0	0	0.000673444	0	0
GRIA4	2893	broad.mit.edu	37	11	105850360	105850360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:105850360G>A	uc001pix.2	+	17	3049	c.2603G>A	c.(2602-2604)GGA>GAA	p.G868E	GRIA4_uc001piw.2_3'UTR|GRIA4_uc009yxl.1_RNA	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	868	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	GGGAGTGTGGGAGAGAATGGC	0.498													10	43					0	0	0.000442599	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106579310	106579310	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:106579310T>A	uc001pjg.1	-	7	2309	c.1919A>T	c.(1918-1920)AAT>ATT	p.N640I	GUCY1A2_uc010rvo.1_Missense_Mutation_p.N661I|GUCY1A2_uc009yxn.1_Missense_Mutation_p.N671I	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	640	Guanylate cyclase.				intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		CAGTGTGACATTATTTCCAAA	0.498													9	28					0	0	0.000673444	0	0
CWF19L2	143884	broad.mit.edu	37	11	107263597	107263597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:107263597G>A	uc010rvp.1	-	11	1672	c.1642C>T	c.(1642-1644)CTT>TTT	p.L548F	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	548							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		GTTCTGACAAGGATTACTTCT	0.338													18	44					0	0	0.00121646	0	0
CWF19L2	143884	broad.mit.edu	37	11	107299650	107299650	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:107299650C>G	uc010rvp.1	-	8	1338	c.1308G>C	c.(1306-1308)TCG>TCC	p.S436S	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	436							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		TACTGGTTTCCGATGGCTTTT	0.408													27	108					0	0	0.001512	0	0
C11orf65	160140	broad.mit.edu	37	11	108332209	108332209	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:108332209G>A	uc001pkh.2	-	2	148	c.78C>T	c.(76-78)TTC>TTT	p.F26F	C11orf65_uc010rvx.1_Silent_p.F26F|C11orf65_uc009yxu.1_RNA	NM_152587	NP_689800	Q8NCR3	CK065_HUMAN	hypothetical protein LOC160140	26										ovary(1)	1		all_cancers(61;1.38e-11)|all_epithelial(67;3.16e-07)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;8.21e-06)|BRCA - Breast invasive adenocarcinoma(274;1.01e-05)|all cancers(92;0.000189)|Colorectal(284;0.114)|OV - Ovarian serous cystadenocarcinoma(223;0.144)		AACTCACAAGGAAACTTTTCC	0.224													50	216					0	0	0.00361006	0	0
EXPH5	23086	broad.mit.edu	37	11	108381478	108381478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:108381478C>T	uc001pkk.2	-	6	4867	c.4756G>A	c.(4756-4758)GAA>AAA	p.E1586K	EXPH5_uc010rvy.1_Missense_Mutation_p.E1398K|EXPH5_uc010rvz.1_Missense_Mutation_p.E1430K|EXPH5_uc010rwa.1_Missense_Mutation_p.E1510K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1586					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GATCTATTTTCCCCCTTTACT	0.418													18	99					0	0	0.00229938	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110457015	110457015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:110457015G>A	uc001pkz.1	-	13	1625	c.1340C>T	c.(1339-1341)TCA>TTA	p.S447L	ARHGAP20_uc001pky.1_Missense_Mutation_p.S424L|ARHGAP20_uc009yyb.1_Missense_Mutation_p.S411L|ARHGAP20_uc001pla.1_Missense_Mutation_p.S411L|ARHGAP20_uc001plb.2_5'UTR	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	447	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		GAGATCTGATGAAAAAATACT	0.299													34	113					0	0	0.00148497	0	0
POU2AF1	5450	broad.mit.edu	37	11	111228429	111228429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:111228429G>A	uc001plg.3	-	4	452	c.197C>T	c.(196-198)TCC>TTC	p.S66F		NM_006235	NP_006226	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	66					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			kidney(1)	1		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		GTCCAGGCAGGAAGGACCTGT	0.627			T	BCL6	NHL								5	7					0	0	0.000602214	0	0
PPP2R1B	5519	broad.mit.edu	37	11	111614227	111614227	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:111614227T>C	uc001plx.1	-	12	1511	c.1427A>G	c.(1426-1428)AAC>AGC	p.N476S	PPP2R1B_uc001plw.1_Missense_Mutation_p.N476S|PPP2R1B_uc010rwi.1_Missense_Mutation_p.N412S|PPP2R1B_uc010rwj.1_Missense_Mutation_p.N315S|PPP2R1B_uc010rwk.1_Missense_Mutation_p.N431S|PPP2R1B_uc010rwl.1_Missense_Mutation_p.N349S	NM_002716	NP_002707	P30154	2AAB_HUMAN	beta isoform of regulatory subunit A, protein	476	HEAT 12.						protein binding				0		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|Epithelial(105;2.36e-06)|all cancers(92;3.78e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0761)		CATGAGGTTGTTGGTGGCAGC	0.383													4	142					0	0	0.000602214	0	0
IL18	3606	broad.mit.edu	37	11	112014513	112014513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:112014513C>T	uc001pnb.1	-	6	608	c.388G>A	c.(388-390)GAT>AAT	p.D130N	IL18_uc001pna.1_Missense_Mutation_p.D104N|IL18_uc009yym.1_Missense_Mutation_p.D126N	NM_001562	NP_001553	Q14116	IL18_HUMAN	interleukin 18 proprotein	130					angiogenesis|cell-cell signaling|chemokine biosynthetic process|granulocyte macrophage colony-stimulating factor biosynthetic process|interferon-gamma biosynthetic process|interleukin-13 biosynthetic process|interleukin-2 biosynthetic process|positive regulation of activated T cell proliferation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma production|positive regulation of interleukin-17 production|positive regulation of natural killer cell proliferation|positive regulation of NK T cell proliferation|regulation of cell adhesion|sleep|T-helper 1 type immune response|type 2 immune response	cytosol|extracellular space	cytokine activity|signal transducer activity				0		all_cancers(61;5.7e-14)|all_epithelial(67;3.4e-08)|Melanoma(852;8.81e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|Epithelial(105;8.15e-07)|all cancers(92;1.43e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.055)		CTTTTTGTATCCTTGATGTTA	0.313													9	34					0	0	0.000673444	0	0
NCAM1	4684	broad.mit.edu	37	11	113105838	113105838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:113105838G>A	uc009yyq.1	+	15	2195	c.1501G>A	c.(1501-1503)GGG>AGG	p.G501R		NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	593	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		CAATGGCAAAGGGCTGGGTGA	0.597													3	7					0	0	6.4e-05	0	0
TTC12	54970	broad.mit.edu	37	11	113210175	113210175	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:113210175C>T	uc001pnu.2	+	10	910	c.805C>T	c.(805-807)CTG>TTG	p.L269L	TTC12_uc001pnv.2_Silent_p.L275L|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Silent_p.L119L	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	269							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		GATTGAGATCCTGACTGAAAT	0.502													18	52					0	0	0.00229938	0	0
ZBTB16	7704	broad.mit.edu	37	11	113935071	113935071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:113935071C>T	uc001pop.2	+	2	1313	c.1049C>T	c.(1048-1050)TCT>TTT	p.S350F	ZBTB16_uc001poo.1_Missense_Mutation_p.S350F|ZBTB16_uc001poq.2_Missense_Mutation_p.S350F	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	350					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		AGCATGCCGTCTTCCGTGACC	0.632													14	24					0	0	0.00074312	0	0
FAM55B	120406	broad.mit.edu	37	11	114568889	114568889	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:114568889G>A	uc009yyy.2	+	3	353	c.255G>A	c.(253-255)AAG>AAA	p.K85K		NM_182495	NP_872301	Q96DL1	FA55B_HUMAN	hypothetical protein LOC120406	85						integral to membrane				ovary(1)	1						TTAGAATAAAGGACATTATGG	0.448													3	13					0	0	0.00024832	0	0
BUD13	84811	broad.mit.edu	37	11	116633974	116633974	+	Missense_Mutation	SNP	C	T	T	rs141852086		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:116633974C>T	uc001ppn.2	-	4	365	c.331G>A	c.(331-333)GAA>AAA	p.E111K	BUD13_uc001ppo.2_Missense_Mutation_p.E111K|BUD13_uc009yzc.2_Missense_Mutation_p.E111K	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	111										large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		GGTAGGTCTTCGTTGTGGCCT	0.507													24	107					0	0	0.00395357	0	0
SIK3	23387	broad.mit.edu	37	11	116729253	116729253	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:116729253G>A	uc001ppy.2	-	20	2646	c.2610C>T	c.(2608-2610)TTC>TTT	p.F870F	SIK3_uc001ppz.2_Intron|SIK3_uc001pqa.2_Intron|SIK3_uc001ppw.2_Intron|SIK3_uc001ppx.2_Intron|SIK3_uc001pqb.2_Silent_p.F173F	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	870	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GGAAGGTGGGGAATTGGTCAA	0.602													44	183					0	0	0.00361006	0	0
SIDT2	51092	broad.mit.edu	37	11	117059475	117059475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:117059475C>T	uc001pqh.1	+	13	1252	c.1211C>T	c.(1210-1212)TCT>TTT	p.S404F	SIDT2_uc010rxe.1_Missense_Mutation_p.S404F|SIDT2_uc001pqg.2_Missense_Mutation_p.S425F|SIDT2_uc001pqi.1_Missense_Mutation_p.S401F	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	404	Cytoplasmic (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		TCCATGAGCTCTGTGGAGGAG	0.592													14	34					0	0	0.00244969	0	0
DSCAML1	57453	broad.mit.edu	37	11	117307868	117307868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:117307868C>T	uc001prh.1	-	26	4872	c.4870G>A	c.(4870-4872)GCC>ACC	p.A1624T		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1564	Extracellular (Potential).|Fibronectin type-III 6.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GCGAACTGGGCTGTTTCATTG	0.617													10	27					0	0	0.000673444	0	0
DSCAML1	57453	broad.mit.edu	37	11	117329626	117329626	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:117329626C>T	uc001prh.1	-	19	3595	c.3593_splice	c.e19-1	p.E1198_splice		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1						axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TCGCCCCACTCTGCCAGAGAC	0.642													7	39					0	0	0.00198382	0	0
DSCAML1	57453	broad.mit.edu	37	11	117374729	117374729	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:117374729C>T	uc001prh.1	-	11	2372	c.2370G>A	c.(2368-2370)GGG>GGA	p.G790G		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	730	Extracellular (Potential).|Ig-like C2-type 8.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GCTGGGGGTTCCCGCTCCCTG	0.632													9	35					0	0	0.000978159	0	0
DSCAML1	57453	broad.mit.edu	37	11	117391858	117391858	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:117391858G>A	uc001prh.1	-	6	1382	c.1380C>T	c.(1378-1380)ATC>ATT	p.I460I	DSCAML1_uc001pri.1_Silent_p.I264I	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	400	Extracellular (Potential).|Ig-like C2-type 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CAAGTGCAATGATGGCAAAGT	0.647													11	43					0	0	0.00136819	0	0
SCN2B	6327	broad.mit.edu	37	11	118037620	118037621	+	Missense_Mutation	DNP	CG	TT	TT	rs144248214		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:118037620_118037621CG>TT	uc001psf.2	-	4	820_821	c.629_630CG>AA	c.(628-630)CCG>CAA	p.P210Q		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	210	Cytoplasmic (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		CGCCATCATCCGGGTTGCCTTC	0.614													6	42					0	0	6.4e-05	0	0
SCN2B	6327	broad.mit.edu	37	11	118037638	118037638	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:118037638C>T	uc001psf.2	-	4	803	c.612G>A	c.(610-612)ACG>ACA	p.T204T		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	204	Cytoplasmic (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		CTTCACCGTCCGTCTTGCCCT	0.602													11	54					0	0	0.00185496	0	0
CD3D	915	broad.mit.edu	37	11	118209929	118209929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:118209929C>T	uc001pss.1	-	5	601	c.464G>A	c.(463-465)CGA>CAA	p.R155Q	CD3D_uc001pst.1_Missense_Mutation_p.R111Q	NM_000732	NP_000723	P04234	CD3D_HUMAN	CD3 antigen, delta subunit isoform A precursor	155	ITAM.|Cytoplasmic (Potential).				positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		AGCATCATCTCGATCTCGGAG	0.547													12	54					0	0	0.00185496	0	0
MLL	4297	broad.mit.edu	37	11	118353184	118353184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:118353184C>T	uc001pta.2	+	8	4083	c.4060C>T	c.(4060-4062)CCT>TCT	p.P1354S	MLL_uc001ptb.2_Missense_Mutation_p.P1354S|MLL_uc001pte.1_RNA|MLL_uc009zab.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1354					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CCCAAGTATCCCTGTAAAACA	0.403			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								27	24					0	0	0.00178596	0	0
CXCR5	643	broad.mit.edu	37	11	118764769	118764769	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:118764769C>T	uc001pue.3	+	2	626	c.516C>T	c.(514-516)ACC>ACT	p.T172T	CXCR5_uc001puf.2_Silent_p.T127T	NM_001716	NP_001707	P32302	CXCR5_HUMAN	Burkitt lymphoma receptor 1 isoform 1	172	Helical; Name=4; (Potential).				B cell activation|cellular component movement	integral to plasma membrane	C-X-C chemokine receptor activity			breast(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		CCTGTGGGACCATCTGGCTGG	0.622													7	22					0	0	0.00198382	0	0
HYOU1	10525	broad.mit.edu	37	11	118923361	118923361	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:118923361G>A	uc001puu.2	-	9	1168	c.975C>T	c.(973-975)GAC>GAT	p.D325D	HYOU1_uc001put.2_Silent_p.D290D|HYOU1_uc010ryu.1_Silent_p.D345D|HYOU1_uc010ryv.1_Silent_p.D214D|HYOU1_uc001pux.3_Silent_p.D325D|HYOU1_uc010ryw.1_RNA|HYOU1_uc001puw.1_Silent_p.D325D	NM_006389	NP_006380	Q9Y4L1	HYOU1_HUMAN	hypoxia up-regulated 1 precursor	325						endoplasmic reticulum lumen	ATP binding|protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.78e-05)		GTGCCATGTGGTCAGCGTTGG	0.607													4	22					0	0	0.000602214	0	0
CBL	867	broad.mit.edu	37	11	119142544	119142544	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:119142544T>C	uc001pwe.2	+	3	681	c.543T>C	c.(541-543)ATT>ATC	p.I181I		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	181	Cbl-PTB.|EF-hand-like.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		CATTTCGGATTACTAAAGCAG	0.403									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				46	167					0	0	0.00361006	0	0
MCAM	4162	broad.mit.edu	37	11	119185254	119185254	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:119185254G>A	uc001pwf.2	-	5	533	c.504C>T	c.(502-504)CCC>CCT	p.P168P		NM_006500	NP_006491	P43121	MUC18_HUMAN	melanoma cell adhesion molecule	168	Ig-like V-type 2.|Extracellular (Potential).				anatomical structure morphogenesis|cell adhesion	integral to membrane|plasma membrane				ovary(2)|breast(1)|central_nervous_system(1)	4		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.78e-05)		CTTGAGGAATGGGGTACCCGT	0.552													10	37					0	0	0.000978159	0	0
USP2	9099	broad.mit.edu	37	11	119243660	119243660	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:119243660C>T	uc001pwm.3	-	2	826	c.531G>A	c.(529-531)AAG>AAA	p.K177K	USP2_uc001pwn.3_Intron	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	177	Necessary for interaction with MDM4.				cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		TGCAGAGCTCCTTGCGCGTCC	0.637													12	33					0	0	0.00244969	0	0
TECTA	7007	broad.mit.edu	37	11	121032793	121032793	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:121032793C>T	uc010rzo.1	+	15	4986	c.4986C>T	c.(4984-4986)GCC>GCT	p.A1662A		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1662	VWFD 4.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GACCTCTTGCCCCCAGCTGCA	0.507													30	36					0	0	0.00375469	0	0
SORL1	6653	broad.mit.edu	37	11	121384861	121384861	+	Missense_Mutation	SNP	G	A	A	rs149041363		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:121384861G>A	uc001pxx.2	+	8	1122	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	348	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity	p.E348K(1)		ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GATTCCAAAGGAATATTACAT	0.433													11	28					0	0	0.00185496	0	0
SORL1	6653	broad.mit.edu	37	11	121491895	121491895	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:121491895C>T	uc001pxx.2	+	44	6092	c.6012C>T	c.(6010-6012)ATC>ATT	p.I2004I	SORL1_uc010rzp.1_Silent_p.I850I|SORL1_uc010rzq.1_Silent_p.I619I	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2004	Extracellular (Potential).|Fibronectin type-III 5.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AATACCACATCATTGTCCAAC	0.458													31	28					0	0	0.0024448	0	0
UBASH3B	84959	broad.mit.edu	37	11	122665459	122665459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:122665459G>A	uc001pyi.3	+	7	1390	c.1030G>A	c.(1030-1032)GAT>AAT	p.D344N		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	344						cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		CACGTTTGGGGATGGAGTATT	0.502													26	110					0	0	0.000878237	0	0
HSPA8	3312	broad.mit.edu	37	11	122928507	122928507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:122928507G>A	uc001pyo.2	-	9	1954	c.1876C>T	c.(1876-1878)CCT>TCT	p.P626S	HSPA8_uc009zbc.2_Missense_Mutation_p.P390S|HSPA8_uc001pyp.2_Missense_Mutation_p.P473S|HSPA8_uc010rzu.1_Missense_Mutation_p.P549S	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	626					cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CCACCACCAGGAAATCCCCCA	0.522													16	51					0	0	0.000422831	0	0
ASAM	79827	broad.mit.edu	37	11	122968638	122968638	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:122968638C>T	uc001pyt.2	-	2	410	c.51G>A	c.(49-51)TTG>TTA	p.L17L		NM_024769	NP_079045	Q9H6B4	CLMP_HUMAN	adipocyte-specific adhesion molecule precursor	17						integral to membrane|tight junction					0		Breast(109;0.0025)|Lung NSC(97;0.0179)|all_lung(97;0.0182)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.73e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		TGTGAGTCCCCAAGGTTCCAA	0.443													26	82					0	0	0.00127121	0	0
SCN3B	55800	broad.mit.edu	37	11	123508998	123508998	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:123508998G>A	uc001pza.1	-	5	887	c.480C>T	c.(478-480)ATC>ATT	p.I160I	SCN3B_uc001pzb.1_Silent_p.I160I	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	160	Helical; (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		TGTACATCATGATTTCTGAGA	0.463													9	36					0	0	0.000442599	0	0
TMEM225	338661	broad.mit.edu	37	11	123753896	123753896	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:123753896C>T	uc001pzi.2	-	4	835	c.627G>A	c.(625-627)GTG>GTA	p.V209V		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	209						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TTAGGGAATTCACAGTGTGTG	0.398													25	9					0	0	0.001512	0	0
OR4D5	219875	broad.mit.edu	37	11	123810615	123810615	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:123810615C>T	uc001pzk.1	+	1	292	c.292C>T	c.(292-294)CTG>TTG	p.L98L		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TGGTGGATGCCTGACTCAACT	0.493													13	52					0	0	0.00185496	0	0
OR10G8	219869	broad.mit.edu	37	11	123901121	123901121	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:123901121G>A	uc001pzp.1	+	1	792	c.792G>A	c.(790-792)AGG>AGA	p.R264R		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CAGGCTCCAGGAAAGCTGTGG	0.537													6	39					0	0	0.00307968	0	0
VWA5A	4013	broad.mit.edu	37	11	124007356	124007356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:124007356C>T	uc001pzu.2	+	14	1809	c.1600C>T	c.(1600-1602)CCT>TCT	p.P534S	VWA5A_uc001pzt.2_Missense_Mutation_p.P534S	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	534										upper_aerodigestive_tract(1)|ovary(1)	2						GGTGACATTTCCTCTACAACC	0.299													14	66					0	0	0.00316338	0	0
OR8B8	26493	broad.mit.edu	37	11	124310340	124310340	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:124310340G>A	uc010sal.1	-	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AGGAAATGAAGATGGTGACTG	0.493													5	77					0	0	0.00198382	0	0
OR8B8	26493	broad.mit.edu	37	11	124310360	124310360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:124310360C>T	uc010sal.1	-	1	622	c.622G>A	c.(622-624)GGT>AGT	p.G208S		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GTGGGCACACCAATATCAATG	0.488													9	54					0	0	0.000274275	0	0
OR8A1	390275	broad.mit.edu	37	11	124440066	124440066	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:124440066A>C	uc010san.1	+	1	102	c.102A>C	c.(100-102)TTA>TTC	p.L34F		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	34	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		TCAAGGGTTTAACGAAGAGAG	0.532													5	24					0	0	0.00116845	0	0
ROBO3	64221	broad.mit.edu	37	11	124742816	124742816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:124742816G>A	uc001qbc.2	+	9	1559	c.1367G>A	c.(1366-1368)GGA>GAA	p.G456E		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	456	Ig-like C2-type 5.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		ATCCTCCAGGGACCAGCCAAT	0.627													3	5					0	0	6.4e-05	0	0
HEPACAM	220296	broad.mit.edu	37	11	124793776	124793776	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:124793776G>A	uc001qbk.2	-	3	964	c.558C>T	c.(556-558)CCC>CCT	p.P186P	HEPACAM_uc009zbj.2_5'Flank|HEPACAM_uc001qbl.1_Silent_p.P186P	NM_152722	NP_689935	Q14CZ8	HECAM_HUMAN	hepatocyte cell adhesion molecule precursor	186	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell cycle arrest|regulation of growth	cytoplasm|integral to membrane				pancreas(1)	1	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.54e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		CATTGAGGAGGGGCTTGCCAT	0.577													11	14					0	0	0.000978159	0	0
CCDC15	80071	broad.mit.edu	37	11	124857228	124857228	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:124857228T>C	uc001qbm.3	+	8	1365	c.1106T>C	c.(1105-1107)GTT>GCT	p.V369A		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	369						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		AAGGTTCAGGTTACTGAGCCA	0.473													23	117					0	0	0.00395357	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418													3	84					0	0	6.4e-05	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709697	128709697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:128709697C>T	uc001qeo.1	-	2	550	c.499G>A	c.(499-501)GGA>AGA	p.G167R	KCNJ1_uc001qep.1_Missense_Mutation_p.G148R|KCNJ1_uc001qeq.1_Missense_Mutation_p.G148R|KCNJ1_uc001qer.1_Missense_Mutation_p.G148R|KCNJ1_uc001qes.1_Missense_Mutation_p.G148R	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	167	Helical; Name=M2; (By similarity).		G -> E (in BS2).		excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	ATTATAACTCCAAGTATAGAC	0.438													18	51					0	0	0.00121646	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128839676	128839676	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:128839676T>A	uc009zcp.2	-	22	5390	c.5390A>T	c.(5389-5391)GAT>GTT	p.D1797V	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.D756V|ARHGAP32_uc001qez.2_Missense_Mutation_p.D1448V	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1797	Interaction with FYN.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						TTTCCCAGGATCTGATTTACT	0.542													9	62					0	0	0.000673444	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128851345	128851345	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:128851345G>A	uc009zcp.2	-	16	1704	c.1704C>T	c.(1702-1704)AGC>AGT	p.S568S	ARHGAP32_uc009zcq.1_Silent_p.S528S|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Silent_p.S219S	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	568					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						TGATTCTGCCGCTGAACAGCA	0.527													13	43					0	0	0.00136819	0	0
TMEM45B	120224	broad.mit.edu	37	11	129725636	129725636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:129725636C>T	uc001qfe.1	+	4	480	c.419C>T	c.(418-420)CCT>CTT	p.P140L	TMEM45B_uc001qff.1_Missense_Mutation_p.P140L	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B	140						integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		CACAACCGGCCTCCGCTGGAC	0.552													6	62					0	0	0.00198382	0	0
PRDM10	56980	broad.mit.edu	37	11	129794919	129794919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:129794919G>A	uc001qfm.2	-	13	1980	c.1748C>T	c.(1747-1749)TCA>TTA	p.S583L	PRDM10_uc001qfj.2_Missense_Mutation_p.S497L|PRDM10_uc001qfk.2_Missense_Mutation_p.S493L|PRDM10_uc001qfl.2_Missense_Mutation_p.S497L|PRDM10_uc010sbx.1_Missense_Mutation_p.S493L|PRDM10_uc001qfn.2_Missense_Mutation_p.S579L	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	583					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		CTTCTGGTCTGAGTGGAGCTT	0.493													28	104					0	0	0.00375469	0	0
PRDM10	56980	broad.mit.edu	37	11	129814867	129814867	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:129814867C>T	uc001qfm.2	-	6	793	c.561G>A	c.(559-561)CCG>CCA	p.P187P	PRDM10_uc001qfj.2_Silent_p.P101P|PRDM10_uc001qfk.2_Silent_p.P101P|PRDM10_uc001qfl.2_Silent_p.P101P|PRDM10_uc010sbx.1_Silent_p.P101P|PRDM10_uc001qfn.2_Silent_p.P187P|PRDM10_uc009zct.1_Silent_p.P219P	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	187					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		GGCCGTGCTTCGGACACACTG	0.592													12	19					0	0	0.00244969	0	0
GLB1L2	89944	broad.mit.edu	37	11	134217228	134217228	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:134217228C>T	uc001qhp.2	+	5	647	c.459C>T	c.(457-459)CTC>CTT	p.L153L	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	153					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		GCTGGCTACTCCAAGACCCTG	0.547													28	146					0	0	0.00375469	0	0
B4GALNT3	283358	broad.mit.edu	37	12	670597	670597	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:670597C>A	uc001qii.1	+	20	2977	c.2977C>A	c.(2977-2979)CGC>AGC	p.R993S	B4GALNT3_uc001qik.1_Missense_Mutation_p.R542S	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	993	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			GTGGAGCCGTCGCCAGATGAA	0.622													5	12					3.59834e-05	0.000100346	0.00116845	1	0
WNK1	65125	broad.mit.edu	37	12	992579	992579	+	Silent	SNP	C	T	T	rs142181848	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:992579C>T	uc001qio.3	+	16	4015	c.3508C>T	c.(3508-3510)CTA>TTA	p.L1170L	WNK1_uc001qip.3_Silent_p.L923L|WNK1_uc001qir.3_Silent_p.L343L	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1170					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			TGACTTTATTCTAGCAATAGA	0.378													16	60					0	0	0.000422831	0	0
LRTM2	654429	broad.mit.edu	37	12	1940672	1940672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:1940672G>A	uc001qjt.2	+	4	1445	c.639G>A	c.(637-639)ATG>ATA	p.M213I	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.M213I|LRTM2_uc010sdx.1_Missense_Mutation_p.M213I|LRTM2_uc001qjv.2_Intron	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	213	LRRCT.|Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			AACACTGGATGGAGTGGTTCT	0.612													15	25					0	0	0.000566183	0	0
PRMT8	56341	broad.mit.edu	37	12	3701474	3701474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:3701474G>A	uc001qmf.2	+	9	1424	c.1057G>A	c.(1057-1059)GAA>AAA	p.E353K	PRMT8_uc009zed.2_Missense_Mutation_p.E344K|PRMT8_uc001qmg.2_Missense_Mutation_p.E167K|PRMT8_uc001qmh.2_RNA	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	353					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			GAGGGGGGAGGAAATCTACGG	0.552													5	28					0	0	0.00116845	0	0
C12orf4	57102	broad.mit.edu	37	12	4634441	4634441	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:4634441T>C	uc001qms.2	-	6	795	c.707A>G	c.(706-708)AAC>AGC	p.N236S	C12orf4_uc001qmt.2_Missense_Mutation_p.N236S	NM_020374	NP_065107	Q9NQ89	CL004_HUMAN	hypothetical protein LOC57102	236											0			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)	BRCA - Breast invasive adenocarcinoma(232;0.0281)		GTTGTTGGGGTTTTTTAGGTC	0.308													34	143					0	0	0.00327116	0	0
DYRK4	8798	broad.mit.edu	37	12	4700454	4700454	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:4700454G>A	uc001qmx.2	+	3	268	c.108G>A	c.(106-108)CTG>CTA	p.L36L	DYRK4_uc009zeh.1_Silent_p.L151L|DYRK4_uc001qmy.1_Silent_p.L36L	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	36						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			AGGTGACTCTGACAGCGGCAG	0.438													8	25					0	0	0.000274275	0	0
AKAP3	10566	broad.mit.edu	37	12	4737076	4737076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:4737076G>A	uc001qnb.3	-	4	1221	c.992C>T	c.(991-993)TCG>TTG	p.S331L		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	331					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						GATGAGATCCGAGACCACCTC	0.483													8	19					0	0	0.000274275	0	0
ANO2	57101	broad.mit.edu	37	12	5708775	5708775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:5708775C>T	uc001qnm.2	-	21	2180	c.2108G>A	c.(2107-2109)CGA>CAA	p.R703Q		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	708	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TTTCAGCTTTCGAAATAGTTT	0.423													9	29					0	0	0.000274275	0	0
ANO2	57101	broad.mit.edu	37	12	5744470	5744470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:5744470C>T	uc001qnm.2	-	17	1736	c.1664G>A	c.(1663-1665)CGA>CAA	p.R555Q		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	560	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						AGTTGTTATTCGATACACTAT	0.488													5	19					0	0	0.00198382	0	0
ANO2	57101	broad.mit.edu	37	12	5963267	5963268	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:5963267_5963268GG>TT	uc001qnm.2	-	4	634_635	c.562_563CC>AA	c.(562-564)CCG>AAG	p.P188K		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	192	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CACCTGCCACGGGGCGTGTATC	0.48													6	181					0	0	6.4e-05	0	0
VWF	7450	broad.mit.edu	37	12	6061640	6061640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:6061640C>T	uc001qnn.1	-	49	8282	c.8032G>A	c.(8032-8034)GTC>ATC	p.V2678I	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2678					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTCTCATTGACCTTGCAGAAG	0.512													10	19					0	0	0.000673444	0	0
VWF	7450	broad.mit.edu	37	12	6128270	6128270	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:6128270G>A	uc001qnn.1	-	28	4564	c.4314C>T	c.(4312-4314)TTC>TTT	p.F1438F	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1438	VWFA 1; binding site for platelet glycoprotein Ib.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TGCTCAGCACGAAGGCCTTGT	0.592													7	27					0	0	0.00198382	0	0
VWF	7450	broad.mit.edu	37	12	6132876	6132876	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:6132876G>A	uc001qnn.1	-	25	3550	c.3300C>T	c.(3298-3300)TTC>TTT	p.F1100F	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1100					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TGGTGTCGCAGAAGCAGGCGC	0.602													6	17					0	0	0.00116845	0	0
CHD4	1108	broad.mit.edu	37	12	6701628	6701628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:6701628G>A	uc001qpo.2	-	19	3043	c.2879C>T	c.(2878-2880)GCC>GTC	p.A960V	CHD4_uc001qpn.2_Missense_Mutation_p.A953V|CHD4_uc001qpp.2_Missense_Mutation_p.A957V	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	960					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						GAACACATCGGCTTTGAGCCG	0.507													16	69					0	0	0.000958276	0	0
C1S	716	broad.mit.edu	37	12	7172536	7172537	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:7172536_7172537CC>TT	uc001qsj.2	+	9	1369_1370	c.650_651CC>TT	c.(649-651)ACC>ATT	p.T217I	C1S_uc001qsk.2_Missense_Mutation_p.T217I|C1S_uc001qsl.2_Missense_Mutation_p.T217I|C1S_uc009zfr.2_Missense_Mutation_p.T50I|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	217	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GTGGTGGTGACCTTGCGGAGAG	0.475													21	77					0	0	6.4e-05	0	0
C1RL	51279	broad.mit.edu	37	12	7249305	7249305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:7249305C>T	uc001qsn.2	-	6	1163	c.1146G>A	c.(1144-1146)ATG>ATA	p.M382I	C1RL_uc009zft.2_3'UTR	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	382	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						TTAGCCAGCCCATCTCCATGC	0.602													16	39					0	0	0.000422831	0	0
ACSM4	341392	broad.mit.edu	37	12	7476905	7476905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:7476905G>A	uc001qsx.1	+	10	1345	c.1345G>A	c.(1345-1347)GAT>AAT	p.D449N		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	449					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GATAAGAGGAGATTTTTATGT	0.453													5	16					0	0	0.000602214	0	0
CD163	9332	broad.mit.edu	37	12	7640497	7640497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:7640497C>T	uc001qsz.3	-	7	1735	c.1607G>A	c.(1606-1608)GGA>GAA	p.G536E	CD163_uc001qta.3_Missense_Mutation_p.G536E|CD163_uc009zfw.2_Missense_Mutation_p.G536E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	536	SRCR 5.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CTGTCCATTTCCCTCTCCAAA	0.532													9	15					0	0	0.000442599	0	0
APOBEC1	339	broad.mit.edu	37	12	7805350	7805350	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:7805350G>A	uc001qtb.2	-	3	160	c.126C>T	c.(124-126)ATC>ATT	p.I42I	APOBEC1_uc001qtc.2_5'UTR|APOBEC1_uc010sgf.1_Silent_p.I42I	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	42					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						TGCCCCACTTGATTTCGTAGA	0.438													14	26					0	0	0.00316338	0	0
CLEC4C	170482	broad.mit.edu	37	12	7883484	7883484	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:7883484T>G	uc001qtg.1	-	5	580	c.406A>C	c.(406-408)AGA>CGA	p.R136R	CLEC4C_uc001qth.1_Silent_p.R136R|CLEC4C_uc001qti.1_Silent_p.R105R	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	136	Extracellular (Potential).|C-type lectin.				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		GAAGAATTTCTTTTCAGATTC	0.328													12	47					0	0	0.00244969	0	0
LOC653113	653113	broad.mit.edu	37	12	8385150	8385150	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:8385150G>A	uc010sgk.1	-	5		c.638C>T				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						TCTCCGTAGGGAAACAGTTTC	0.507													17	194					0	0	0.000958276	0	0
A2M	2	broad.mit.edu	37	12	9230416	9230416	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:9230416G>A	uc001qvk.1	-	26	3270	c.3157C>T	c.(3157-3159)CGA>TGA	p.R1053*	A2M_uc001qvj.1_Nonsense_Mutation_p.R95*|A2M_uc009zgk.1_Nonsense_Mutation_p.R903*	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	1053					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	ATGTAGGCTCGAGCTTGGGCA	0.473													9	33					0	0	0.000673444	0	0
A2M	2	broad.mit.edu	37	12	9241798	9241798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:9241798G>A	uc001qvk.1	-	22	2881	c.2768C>T	c.(2767-2769)TCA>TTA	p.S923L	A2M_uc009zgk.1_Missense_Mutation_p.S773L	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	923					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	ACTCTTACCTGATGGACAAAG	0.328													5	17					0	0	0.00198382	0	0
OLR1	4973	broad.mit.edu	37	12	10313409	10313409	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:10313409C>T	uc001qxo.1	-	4	654	c.540G>A	c.(538-540)CTG>CTA	p.L180L	OLR1_uc010sgz.1_Intron|OLR1_uc010sha.1_Intron	NM_002543	NP_002534	P78380	OLR1_HUMAN	oxidized low density lipoprotein (lectin-like)	180	Extracellular (Potential).|C-type lectin.				blood circulation|blood coagulation|inflammatory response|leukocyte migration|proteolysis	extracellular region|integral to plasma membrane|membrane fraction	sugar binding			ovary(1)	1						TATTAATTTTCAGCAACTTGG	0.418													34	142					0	0	0.00148497	0	0
STYK1	55359	broad.mit.edu	37	12	10783869	10783869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:10783869C>T	uc001qys.2	-	5	747	c.226G>A	c.(226-228)GAA>AAA	p.E76K		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	76						integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						TGTCCTGCTTCCCAGCTTAGG	0.557										HNSCC(73;0.22)			6	34					0	0	0.00116845	0	0
STYK1	55359	broad.mit.edu	37	12	10786678	10786678	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:10786678A>C	uc001qys.2	-	4	619	c.98T>G	c.(97-99)TTG>TGG	p.L33W		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	33	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						GATAGTAACCAACAAAGTTGG	0.453										HNSCC(73;0.22)			26	101					0	0	0.00106085	0	0
TAS2R31	259290	broad.mit.edu	37	12	11183701	11183701	+	Silent	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:11183701T>A	uc001qzo.1	-	1	306	c.234A>T	c.(232-234)GTA>GTT	p.V78V	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176885	NP_795366	P59538	T2R31_HUMAN	taste receptor, type 2, member 31	78	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						TTCTTACTTCTACACTATAAA	0.408													17	94					0	0	0.000422831	0	0
PRB4	5545	broad.mit.edu	37	12	11461537	11461537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:11461537C>T	uc001qzf.1	-	3	414	c.380G>A	c.(379-381)GGA>GAA	p.G127E	PRB4_uc001qzt.2_Missense_Mutation_p.G127E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	190	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|8.					extracellular region				ovary(1)	1						CTGGTTGCCTCCTTGTGGGGG	0.602										HNSCC(22;0.051)			20	47					0	0	0.00229938	0	0
PRB1	5542	broad.mit.edu	37	12	11506683	11506683	+	Silent	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:11506683T>A	uc001qzw.1	-	3	391	c.354A>T	c.(352-354)CCA>CCT	p.P118P	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	179	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GTGGTCCTTGTGGCTTTCCTG	0.607													14	126					0	0	0.000566183	0	0
PRB2	653247	broad.mit.edu	37	12	11546548	11546548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:11546548G>A	uc010shk.1	-	3	499	c.464C>T	c.(463-465)CCT>CTT	p.P155L		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTTTCCTGGAGGTGGGGGACC	0.602													17	91					0	0	0.00332997	0	0
ETV6	2120	broad.mit.edu	37	12	12022819	12022819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:12022819C>T	uc001qzz.2	+	5	1199	c.925C>T	c.(925-927)CGG>TGG	p.R309W	ETV6_uc001raa.1_Missense_Mutation_p.R102W	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	309						cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				CCTCTCTCATCGGGAAGACCT	0.577			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								8	47					0	0	0.00185496	0	0
LRP6	4040	broad.mit.edu	37	12	12277576	12277576	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:12277576G>A	uc001rah.3	-	22	4612	c.4470C>T	c.(4468-4470)TCC>TCT	p.S1490S	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Silent_p.S1445S	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1490	PPPSP motif A.|Cytoplasmic (Potential).			S->A: Greatly reduced phosphorylation of PPPSP motif A. Greatly reduced Wnt/beta- catenin signaling.|S->T: Some loss of phosphorylation of PPPSP motif A. Little reduction in Wnt/beta-catenin signaling.	cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				CTGTGGCTGGGGATGGTGGAG	0.333													132	152					0	0	0.00361006	0	0
LRP6	4040	broad.mit.edu	37	12	12339863	12339863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:12339863G>A	uc001rah.3	-	4	980	c.838C>T	c.(838-840)CCA>TCA	p.P280S	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.P280S	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	280	Extracellular (Potential).				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TTACCATTTGGCTGCCTCTGT	0.448													88	135					0	0	0.00361006	0	0
GPR19	2842	broad.mit.edu	37	12	12815265	12815265	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:12815265G>A	uc001rar.3	-	2	311	c.118C>T	c.(118-120)CTG>TTG	p.L40L	GPR19_uc001raq.2_Silent_p.L40L	NM_006143	NP_006134	Q15760	GPR19_HUMAN	G protein-coupled receptor 19	40	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		AATTCCATCAGGTATTGGCTT	0.498													23	77					0	0	0.00332997	0	0
GRIN2B	2904	broad.mit.edu	37	12	13720142	13720142	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:13720142C>T	uc001rbt.2	-	12	2594	c.2415G>A	c.(2413-2415)AAG>AAA	p.K805K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	805	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGACCTCATTCTTCTCATTGT	0.433													11	36					0	0	0.00244969	0	0
ART4	420	broad.mit.edu	37	12	14982369	14982369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:14982369G>A	uc001rcl.1	-	3	1247	c.881C>T	c.(880-882)CCT>CTT	p.P294L	ART4_uc009zid.1_RNA|ART4_uc009zie.1_RNA	NM_021071	NP_066549	Q93070	NAR4_HUMAN	ADP-ribosyltransferase 4 precursor	294					arginine metabolic process|protein ADP-ribosylation	anchored to membrane|plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity				0						AATAGCTATAGGATCAGGGAT	0.323													15	42					0	0	0.00074312	0	0
RERG	85004	broad.mit.edu	37	12	15262186	15262186	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:15262186T>G	uc001rcs.2	-	4	598	c.458A>C	c.(457-459)GAA>GCA	p.E153A	RERG_uc001rct.2_Missense_Mutation_p.E153A|RERG_uc010shu.1_Missense_Mutation_p.E134A	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	153					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						GATGTTCCCTTCTCCAGTGCA	0.552													18	59					0	0	0.00074312	0	0
RERGL	79785	broad.mit.edu	37	12	18234401	18234401	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:18234401C>T	uc001rdq.2	-	6	536	c.342G>A	c.(340-342)GTG>GTA	p.V114V	RERGL_uc001rdr.2_Silent_p.V113V	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	114	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						CTGCTGATTCCACAGCTCTGA	0.363													6	31					0	0	0.00198382	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18644479	18644479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:18644479G>A	uc001rdt.2	+	19	2773	c.2657G>A	c.(2656-2658)GGG>GAG	p.G886E	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.G927E|PIK3C2G_uc010sic.1_Missense_Mutation_p.G705E	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	886					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TGTATAAAAGGGATTGATCAC	0.338													13	71					0	0	0.00185496	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18658353	18658353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:18658353G>A	uc001rdt.2	+	23	3274	c.3158G>A	c.(3157-3159)GGA>GAA	p.G1053E	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.G1094E|PIK3C2G_uc010sic.1_Missense_Mutation_p.G872E	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1053	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ATTGACTTTGGAAAATTCTTA	0.393													7	17					0	0	0.00307968	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21011408	21011408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:21011408G>A	uc001rek.2	+	4	388	c.262G>A	c.(262-264)GGA>AGA	p.G88R	SLCO1B3_uc001rel.2_Missense_Mutation_p.G88R|SLCO1B3_uc010sil.1_Missense_Mutation_p.G88R|LST-3TM12_uc010sim.1_Missense_Mutation_p.G88R	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	88	Helical; Name=2; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					AAGTTACTTTGGATCTAAACT	0.313													9	36					0	0	0.000274275	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21015456	21015456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:21015456G>A	uc001rek.2	+	6	718	c.592G>A	c.(592-594)GAT>AAT	p.D198N	SLCO1B3_uc001rel.2_Missense_Mutation_p.D198N|SLCO1B3_uc010sil.1_Missense_Mutation_p.D198N|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.D23N	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	198	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ATACATTGATGATTTTGCAAA	0.378													11	36					0	0	0.000978159	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172303	21172303	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:21172303C>T	uc010sin.1	+	2	207	c.207C>T	c.(205-207)TTC>TTT	p.F69F	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	69						membrane	transporter activity				0						TACCACATTTCTTCATGGGAT	0.318													9	41					0	0	0.000442599	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21331521	21331521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:21331521G>A	uc001req.3	+	6	597	c.493G>A	c.(493-495)GAA>AAA	p.E165K		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	165	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TTGTTTAAAGGAATCTGGGTC	0.323													11	51					0	0	0.00244969	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21358869	21358869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:21358869G>A	uc001req.3	+	11	1503	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	467	Extracellular (Potential).|Kazal-like.				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	CAATTGTGATGAAAGTCAATG	0.358													10	58					0	0	0.000442599	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21450370	21450370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:21450370C>T	uc001rer.2	-	8	1294	c.1043G>A	c.(1042-1044)GGA>GAA	p.G348E	SLCO1A2_uc001res.2_Missense_Mutation_p.G348E|SLCO1A2_uc010siq.1_Missense_Mutation_p.G216E|SLCO1A2_uc010sio.1_Missense_Mutation_p.G216E|SLCO1A2_uc010sip.1_Missense_Mutation_p.G216E|SLCO1A2_uc001ret.2_Missense_Mutation_p.G346E|SLCO1A2_uc001reu.2_Missense_Mutation_p.G328E	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	348	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						AGATGATATTCCATATTGCTG	0.388													4	30					0	0	0.00198382	0	0
GYS2	2998	broad.mit.edu	37	12	21695464	21695464	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:21695464G>A	uc001rfb.2	-	13	1866	c.1611C>T	c.(1609-1611)TTC>TTT	p.F537F		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	537					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GCTCCTGCATGAAACAGCCAA	0.522													7	15					0	0	0.00307968	0	0
ABCC9	10060	broad.mit.edu	37	12	21995375	21995375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:21995375G>A	uc001rfi.1	-	27	3366	c.3346C>T	c.(3346-3348)CGC>TGC	p.R1116C	ABCC9_uc001rfh.2_Missense_Mutation_p.R1116C|ABCC9_uc001rfj.1_Missense_Mutation_p.R1080C	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1116	ABC transmembrane type-1 2.|Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGTGTTGAGCGAGTTAGAGAT	0.423													6	33					0	0	0.00198382	0	0
BCAT1	586	broad.mit.edu	37	12	25031487	25031487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:25031487G>A	uc001rgd.3	-	5	929	c.487C>T	c.(487-489)CGT>TGT	p.R163C	BCAT1_uc001rgc.2_Missense_Mutation_p.R162C|BCAT1_uc010six.1_Missense_Mutation_p.R175C|BCAT1_uc010siy.1_Missense_Mutation_p.R126C|BCAT1_uc001rge.3_Missense_Mutation_p.R102C	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	163					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	AATGTAGGACGAATATACAGA	0.373													10	35					0	0	0.00136819	0	0
SSPN	8082	broad.mit.edu	37	12	26377269	26377269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:26377269C>T	uc001rhe.2	+	2	423	c.323C>T	c.(322-324)TCA>TTA	p.S108L	SSPN_uc001rhd.2_Missense_Mutation_p.S5L|SSPN_uc009zjf.2_Missense_Mutation_p.S108L|SSPN_uc001rhf.3_Intron	NM_005086	NP_005077	Q14714	SSPN_HUMAN	sarcospan isoform 1	108	Cytoplasmic (Potential).				cell adhesion|muscle contraction	cell junction|dystrophin-associated glycoprotein complex|integral to plasma membrane|postsynaptic membrane|sarcolemma|transport vesicle					0	Colorectal(261;0.0847)					CTTTGTGTCTCATATCAGGTT	0.383													52	245					0	0	0.00361006	0	0
MRPS35	60488	broad.mit.edu	37	12	27908299	27908299	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:27908299T>G	uc001rih.2	+	8	936	c.888T>G	c.(886-888)GTT>GTG	p.V296V	MRPS35_uc001rii.2_3'UTR	NM_021821	NP_068593	P82673	RT35_HUMAN	mitochondrial ribosomal protein S35 precursor	296	Potential.				DNA damage response, detection of DNA damage	mitochondrial small ribosomal subunit					0	Lung SC(9;0.0873)					AAAAGTCTGTTGTTAGTCTTA	0.328													43	185					0	0	0.00285205	0	0
DDX11	1663	broad.mit.edu	37	12	31244760	31244760	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:31244760C>T	uc001rjt.1	+	10	1448	c.1197C>T	c.(1195-1197)ATC>ATT	p.I399I	DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Silent_p.I399I|DDX11_uc001rjs.1_Silent_p.I399I|DDX11_uc001rju.1_Silent_p.I77I|DDX11_uc001rjv.1_Silent_p.I399I|DDX11_uc001rjw.1_Silent_p.I373I|DDX11_uc001rjx.1_Silent_p.I77I|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	399	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					ACAACCTGATCGACACCATCA	0.667										Multiple Myeloma(12;0.14)			7	39					0	0	0.00307968	0	0
YARS2	51067	broad.mit.edu	37	12	32908768	32908768	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:32908768C>T	uc001rli.2	-	1	107	c.41G>A	c.(40-42)TGG>TAG	p.W14*		NM_001040436	NP_001035526	Q9Y2Z4	SYYM_HUMAN	tyrosyl-tRNA synthetase 2, mitochondrial	14					tyrosyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|RNA binding|tyrosine-tRNA ligase activity				0	Lung NSC(5;2.43e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)				L-Tyrosine(DB00135)	GGTACCAGACCACCGGCCCCA	0.617											OREG0021729	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	25					0	0	0.00116845	0	0
PKP2	5318	broad.mit.edu	37	12	33031083	33031083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:33031083G>A	uc001rlj.3	-	3	846	c.731C>T	c.(730-732)CCC>CTC	p.P244L	PKP2_uc001rlk.3_Missense_Mutation_p.P244L|PKP2_uc010skj.1_Missense_Mutation_p.P244L	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	244					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CCCTGGCCTGGGGTACGTGAG	0.622													4	26					0	0	0.000602214	0	0
PKP2	5318	broad.mit.edu	37	12	33031961	33031961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:33031961G>A	uc001rlj.3	-	2	344	c.229C>T	c.(229-231)CTT>TTT	p.L77F	PKP2_uc001rlk.3_Missense_Mutation_p.L77F|PKP2_uc010skj.1_Missense_Mutation_p.L77F	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	77					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GTTCGGTGAAGATTTCCTGCA	0.338													13	63					0	0	0.00244969	0	0
SYT10	341359	broad.mit.edu	37	12	33535331	33535331	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:33535331C>T	uc001rll.1	-	5	1620	c.1323G>A	c.(1321-1323)GAG>GAA	p.E441E	SYT10_uc009zju.1_Silent_p.E251E	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	441	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					GGTCCACGTTCTCTGGAGGGA	0.443													13	49					0	0	0.00185496	0	0
SLC2A13	114134	broad.mit.edu	37	12	40223908	40223908	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:40223908C>G	uc010skm.1	-	7	1493	c.1442G>C	c.(1441-1443)GGC>GCC	p.G481A	C12orf40_uc009zjv.1_Intron|SLC2A13_uc001rme.1_Missense_Mutation_p.G128A	NM_052885	NP_443117	Q96QE2	MYCT_HUMAN	solute carrier family 2 (facilitated glucose	481	Extracellular (Potential).					integral to membrane|plasma membrane	myo-inositol:hydrogen symporter activity			ovary(1)	1		Lung NSC(34;0.105)|all_lung(34;0.123)				GATATACCTGCCCCAGGCTGC	0.378										HNSCC(50;0.14)			4	14					0	0	0.000602214	0	0
LRRK2	120892	broad.mit.edu	37	12	40681237	40681237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:40681237G>A	uc001rmg.3	+	20	2706	c.2585G>A	c.(2584-2586)GGA>GAA	p.G862E	LRRK2_uc001rmh.1_Missense_Mutation_p.G484E	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	862					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GGCAGCGATGGAAATTTTTCT	0.393													5	26					0	0	0.000602214	0	0
CNTN1	1272	broad.mit.edu	37	12	41463807	41463807	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:41463807C>T	uc001rmm.1	+	24	3140	c.3027C>T	c.(3025-3027)GCC>GCT	p.A1009A	CNTN1_uc001rmn.1_Silent_p.A998A	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	1009					axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TGCTGCCTGCCTTTGGCATCC	0.473													15	49					0	0	0.00316338	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43822244	43822244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:43822244C>T	uc010skx.1	-	26	3745	c.3745G>A	c.(3745-3747)GAA>AAA	p.E1249K	ADAMTS20_uc001rno.1_Missense_Mutation_p.E367K|ADAMTS20_uc001rnp.1_Missense_Mutation_p.E403K	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1249	TSP type-1 8.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GGGCGAACTTCAGGATCACAG	0.468													5	24					0	0	0.00116845	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43858400	43858401	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:43858400_43858401GG>AA	uc010skx.1	-	10	1502_1503	c.1502_1503CC>TT	c.(1501-1503)CCC>CTT	p.P501L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	501	Disintegrin.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTACTATATGGGGACACATTTG	0.337													20	76					0	0	6.4e-05	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43945032	43945032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:43945032G>A	uc010skx.1	-	2	133	c.133C>T	c.(133-135)CCC>TCC	p.P45S		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	45						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACCCGCTCGGGGATCACTACT	0.577													8	18					0	0	0.000442599	0	0
DBX2	440097	broad.mit.edu	37	12	45410243	45410243	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:45410243G>A	uc001rok.1	-	4	1018	c.846C>T	c.(844-846)GTC>GTT	p.V282V		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	282						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		GCTGTTGGGGGACGTCCCATA	0.507													9	35					0	0	0.000978159	0	0
ANO6	196527	broad.mit.edu	37	12	45771870	45771870	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:45771870T>C	uc001roo.2	+	10	1474	c.1139T>C	c.(1138-1140)GTC>GCC	p.V380A	ANO6_uc010sld.1_Missense_Mutation_p.V380A|ANO6_uc010sle.1_Missense_Mutation_p.V380A|ANO6_uc010slf.1_Missense_Mutation_p.V401A|ANO6_uc010slg.1_Missense_Mutation_p.V362A	NM_001025356	NP_001020527	Q4KMQ2	ANO6_HUMAN	anoctamin 6 isoform a	380	Helical; (Potential).				activation of blood coagulation via clotting cascade|phosphatidylserine exposure on blood platelet	chloride channel complex|plasma membrane	chloride channel activity			ovary(1)|kidney(1)	2						GGAACCCTGGTCTTTGCAGTA	0.313													29	96					0	0	0.00283554	0	0
SLC38A4	55089	broad.mit.edu	37	12	47178909	47178909	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:47178909T>A	uc001rpi.2	-	6	777	c.378A>T	c.(376-378)TTA>TTT	p.L126F	SLC38A4_uc001rpj.2_Missense_Mutation_p.L126F|SLC38A4_uc009zkl.2_Missense_Mutation_p.L126F	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	126	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CTGTTTTTAATAAAAGGTGAA	0.343													8	26					0	0	0.000978159	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471829	47471829	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:47471829C>T	uc001rpm.2	-	3	1612	c.957G>A	c.(955-957)ACG>ACA	p.T319T	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Silent_p.T319T|AMIGO2_uc001rpl.2_Silent_p.T319T	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	319	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					AGATGAAATCCGTATTTGCAT	0.458													20	124					0	0	0.00278032	0	0
FAM113B	91523	broad.mit.edu	37	12	47628852	47628852	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:47628852C>T	uc001rpn.2	+	4	737	c.6C>T	c.(4-6)ATC>ATT	p.I2I	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Silent_p.I2I	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	2							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					GCGTCATGATCCTTCTGCGGG	0.592													5	23					0	0	0.00198382	0	0
FAM113B	91523	broad.mit.edu	37	12	47629792	47629792	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:47629792C>T	uc001rpn.2	+	4	1677	c.946C>T	c.(946-948)CTG>TTG	p.L316L	FAM113B_uc001rpq.2_Silent_p.L316L	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	316	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					gctcccgctcctgtccccaca	0.224													8	31					0	0	0.00307968	0	0
RND1	27289	broad.mit.edu	37	12	49254900	49254900	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:49254900G>A	uc001rsn.2	-	4	436	c.333C>T	c.(331-333)ATC>ATT	p.I111I		NM_014470	NP_055285	Q92730	RND1_HUMAN	GTP-binding protein RHO6 precursor	111					actin filament organization|axon guidance|negative regulation of cell adhesion|neuron remodeling|small GTPase mediated signal transduction	adherens junction|cytoskeleton|cytosol	GTP binding|GTPase activity|receptor binding			ovary(1)	1						AATAATCTAGGATTTCTGTCC	0.542													12	40					0	0	0.00136819	0	0
DDN	23109	broad.mit.edu	37	12	49390579	49390579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:49390579G>A	uc001rsv.1	-	2	2098	c.2080C>T	c.(2080-2082)CTC>TTC	p.L694F	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	694	Interaction with CD2AP and NPHS1 (By similarity).					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						ACCCCGAAGAGGACCTCCTCG	0.552											OREG0021778	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	27					0	0	0.00395357	0	0
MLL2	8085	broad.mit.edu	37	12	49434979	49434979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:49434979C>T	uc001rta.3	-	31	6574	c.6574G>A	c.(6574-6576)GCA>ACA	p.A2192T		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2192	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GTGGGCGGTGCCGTGGGGAAG	0.706			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			4	8					0	0	0.000602214	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50186494	50186494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:50186494G>A	uc009zlk.2	-	11	3818	c.3616C>T	c.(3616-3618)CCG>TCG	p.P1206S	NCKAP5L_uc001rvc.3_Missense_Mutation_p.P410S|NCKAP5L_uc001rvb.2_Missense_Mutation_p.P799S	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	1202	Pro-rich.									central_nervous_system(1)	1						CGGTGGCCCGGAGCAGCGGGT	0.682													5	8					0	0	0.00198382	0	0
BIN2	51411	broad.mit.edu	37	12	51685531	51685531	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:51685531C>T	uc001ryg.2	-	10	1411	c.1359G>A	c.(1357-1359)GGG>GGA	p.G453G	BIN2_uc009zlz.2_Silent_p.G421G|BIN2_uc001ryh.2_Silent_p.G329G|BIN2_uc010sng.1_Silent_p.G427G	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	453	Pro-rich.					cytoplasm	protein binding			ovary(1)	1						CAGTCCCAGTCCCCAAGGAGG	0.577													4	19					0	0	0.00024832	0	0
SCN8A	6334	broad.mit.edu	37	12	52162718	52162718	+	Missense_Mutation	SNP	G	A	A	rs80261247		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:52162718G>A	uc001ryw.2	+	17	3149	c.2971G>A	c.(2971-2973)GAT>AAT	p.D991N	SCN8A_uc010snl.1_Missense_Mutation_p.D856N	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	991	II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	CACAGATGACGATGGGGAAAT	0.507													6	18					0	0	0.000274275	0	0
SCN8A	6334	broad.mit.edu	37	12	52200862	52200862	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:52200862C>T	uc001ryw.2	+	27	5770	c.5592C>T	c.(5590-5592)ATC>ATT	p.I1864I	uc001rzb.1_5'Flank	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1864					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	AGTTGGACATCCTGCGGCAGC	0.557													15	43					0	0	0.00074312	0	0
KRT82	3888	broad.mit.edu	37	12	52788801	52788801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:52788801C>T	uc001sai.1	-	9	1615	c.1500G>A	c.(1498-1500)ATG>ATA	p.M500I		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	500	Tail.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		CTCCTAGCGTCATGCTGGATT	0.632													9	21					0	0	0.000274275	0	0
KRT75	9119	broad.mit.edu	37	12	52827787	52827787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:52827787C>T	uc001saj.2	-	1	324	c.302G>A	c.(301-303)GGG>GAG	p.G101E		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	101	Gly-rich.|Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		AACTCCACCCCCATAGCCAAA	0.597													6	31					0	0	0.00198382	0	0
KRT71	112802	broad.mit.edu	37	12	52944022	52944023	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:52944022_52944023CC>TT	uc001sao.2	-	2	516_517	c.446_447GG>AA	c.(445-447)CGG>CAA	p.R149Q		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	149	Coil 1A.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		GCTCCAGGAACCGCACCTGGAA	0.47													7	28					0	0	6.4e-05	0	0
KRT72	140807	broad.mit.edu	37	12	52984626	52984626	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:52984626C>T	uc001sar.2	-	6	1169	c.1083G>A	c.(1081-1083)AAG>AAA	p.K361K	KRT72_uc001saq.2_Silent_p.K361K|KRT72_uc010sns.1_Intron|KRT72_uc010snt.1_Silent_p.K173K	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	361	Coil 2.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		CCACCTGCTTCTTCACATTCC	0.483													8	41					0	0	0.00307968	0	0
KRT73	319101	broad.mit.edu	37	12	53002204	53002204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:53002204C>T	uc001sas.2	-	9	1434	c.1399G>A	c.(1399-1401)GGC>AGC	p.G467S		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	467	Tail.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCCCTGTGCCTGCCATCCCG	0.622													6	13					0	0	0.00307968	0	0
KRT2	3849	broad.mit.edu	37	12	53041994	53041994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:53041994C>T	uc001sat.2	-	5	1118	c.1085G>A	c.(1084-1086)AGG>AAG	p.R362K		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	362	Coil 2.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		TTCCTTGCTCCTCTGGGCGAT	0.582													17	57					0	0	0.00121646	0	0
KRT3	3850	broad.mit.edu	37	12	53185594	53185594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:53185594C>T	uc001say.2	-	6	1261	c.1195G>A	c.(1195-1197)GAG>AAG	p.E399K		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	399	Rod.|Coil 2.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						GTCTGCAGCTCCCCCAACTGC	0.522													7	13					0	0	0.00307968	0	0
KRT3	3850	broad.mit.edu	37	12	53189777	53189777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:53189777G>A	uc001say.2	-	1	116	c.50C>T	c.(49-51)TCC>TTC	p.S17F		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	17	Gly-rich.|Head.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						AGAGCGGCCGGAGAAACCCTG	0.617													7	24					0	0	0.00198382	0	0
KRT4	3851	broad.mit.edu	37	12	53202105	53202105	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:53202105C>T	uc001saz.2	-	6	1591	c.1320G>A	c.(1318-1320)CGG>CGA	p.R440R		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	366						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						CGATCTCTGCCCGCAGCCTCT	0.547													11	77					0	0	0.00316338	0	0
EIF4B	1975	broad.mit.edu	37	12	53421854	53421854	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:53421854G>A	uc001sbh.3	+	8	1067	c.861G>A	c.(859-861)AGG>AGA	p.R287R	EIF4B_uc010snu.1_Silent_p.R287R|EIF4B_uc010snv.1_Silent_p.R248R|EIF4B_uc001sbi.2_Silent_p.R39R	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	287	Arg-rich.|Asp-rich.				insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						GGTATCGCAGGGATGATGACT	0.502													17	46					0	0	0.000566183	0	0
NFE2	4778	broad.mit.edu	37	12	54686971	54686971	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:54686971G>A	uc009znk.2	-	2	819	c.309C>T	c.(307-309)GCC>GCT	p.A103A	NFE2_uc001sfq.2_Silent_p.A103A|NFE2_uc001sfr.3_Silent_p.A103A|NFE2_uc009znl.2_Silent_p.A103A	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	103	Transactivation domain.				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						AGACTGGTATGGCCATGTTGC	0.592													28	48					0	0	0.00178596	0	0
KIAA0748	9840	broad.mit.edu	37	12	55356625	55356625	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:55356625A>C	uc001sgn.3	-	9	1167	c.1057T>G	c.(1057-1059)TTG>GTG	p.L353V	KIAA0748_uc001sgl.3_Missense_Mutation_p.L215V|KIAA0748_uc001sgm.3_Missense_Mutation_p.L100V|KIAA0748_uc010spb.1_Missense_Mutation_p.L100V|KIAA0748_uc010spc.1_Missense_Mutation_p.L215V|KIAA0748_uc010spd.1_Missense_Mutation_p.L353V|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	353										ovary(1)|central_nervous_system(1)	2						GAAGTGGGCAACTTCTTACCC	0.507													6	15					0	0	0.00116845	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420921	55420921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:55420921G>A	uc001sgp.3	+	2	1076	c.698G>A	c.(697-699)GGA>GAA	p.G233E		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	233					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						AAGAGTTTGGGAGAATCGTCC	0.517													4	18					0	0	0.000602214	0	0
OR9K2	441639	broad.mit.edu	37	12	55523961	55523961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:55523961G>A	uc010spe.1	+	1	409	c.409G>A	c.(409-411)GGA>AGA	p.G137R		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	137	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						TGTGACTGAGGGATTTCTCCT	0.498													10	42					0	0	0.000442599	0	0
OR6C65	403282	broad.mit.edu	37	12	55795008	55795008	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:55795008G>A	uc010spl.1	+	1	696	c.696G>A	c.(694-696)AGG>AGA	p.R232R		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCCAGCAAAGGAAAAAGGCTT	0.398													27	77					0	0	0.000878237	0	0
OR6C2	341416	broad.mit.edu	37	12	55846762	55846762	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:55846762C>T	uc001sgz.1	+	1	765	c.765C>T	c.(763-765)TTC>TTT	p.F255F		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GCTGCATCTTCATCTATATCA	0.423													7	27					0	0	0.000442599	0	0
OR6C2	341416	broad.mit.edu	37	12	55846822	55846822	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:55846822T>C	uc001sgz.1	+	1	825	c.825T>C	c.(823-825)CTT>CTC	p.L275L		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TTTCAGTTCTTACTACTTCTG	0.413													5	20					0	0	0.000602214	0	0
ITGA7	3679	broad.mit.edu	37	12	56088048	56088048	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:56088048G>A	uc001shh.2	-	18	2656	c.2436C>T	c.(2434-2436)TCC>TCT	p.S812S	ITGA7_uc001shg.2_Silent_p.S808S|ITGA7_uc010sps.1_Silent_p.S715S|ITGA7_uc009znw.2_Silent_p.S55S|ITGA7_uc009znx.2_Silent_p.S689S	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	852	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						ACCCTGCAATGGACAGTGGCA	0.607													9	62					0	0	0.000673444	0	0
DNAJC14	85406	broad.mit.edu	37	12	56188601	56188601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:56188601G>A	uc001shu.1	-	11	2472	c.2416C>T	c.(2416-2418)CGG>TGG	p.R806W	SARNP_uc009zoa.2_RNA|SARNP_uc001shs.3_RNA|SARNP_uc001sht.2_Missense_Mutation_p.R123W|SARNP_uc001shv.3_Missense_Mutation_p.R123W	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	Error:Variant_position_missing_in_Q6Y2X3_after_alignment					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						CTAGCTGCCCGAGCAGCTTTC	0.423													9	32					0	0	0.000442599	0	0
DNAJC14	85406	broad.mit.edu	37	12	56188603	56188603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:56188603G>A	uc001shu.1	-	11	2470	c.2414C>T	c.(2413-2415)GCT>GTT	p.A805V	SARNP_uc009zoa.2_RNA|SARNP_uc001shs.3_RNA|SARNP_uc001sht.2_Missense_Mutation_p.A122V|SARNP_uc001shv.3_Missense_Mutation_p.A122V	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	Error:Variant_position_missing_in_Q6Y2X3_after_alignment					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						AGCTGCCCGAGCAGCTTTCTT	0.423													9	34					0	0	0.000442599	0	0
WIBG	84305	broad.mit.edu	37	12	56297237	56297237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:56297237G>A	uc001sif.1	-	2	217	c.65C>T	c.(64-66)CCT>CTT	p.P22L	WIBG_uc001sie.1_Missense_Mutation_p.P21L	NM_032345	NP_115721	Q9BRP8	WIBG_HUMAN	within bgcn homolog isoform 1	22	Required for interaction with MAGOH and RBM8A.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|exon-exon junction complex|nucleolus|nucleoplasm	protein binding|ribosome binding|RNA binding				0						GGTCCCGTCAGGTCGCTGTGT	0.443													20	70					0	0	0.00395357	0	0
ERBB3	2065	broad.mit.edu	37	12	56488219	56488219	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:56488219C>T	uc001sjh.2	+	15	1931	c.1738C>T	c.(1738-1740)CGA>TGA	p.R580*	ERBB3_uc009zoj.2_Intron|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Nonsense_Mutation_p.R521*|ERBB3_uc009zok.2_Nonsense_Mutation_p.R22*|ERBB3_uc001sjk.2_5'Flank	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	580	Extracellular (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			TGCCCATTTTCGAGATGGGCC	0.527													21	49					0	0	0.00229938	0	0
SMARCC2	6601	broad.mit.edu	37	12	56558217	56558217	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:56558217G>A	uc001skb.2	-	27	3544	c.3438C>T	c.(3436-3438)AAC>AAT	p.N1146N	SMARCC2_uc001skd.2_Intron|SMARCC2_uc001ska.2_Intron|SMARCC2_uc001skc.2_Intron|SMARCC2_uc010sqf.1_Intron	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1146	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			TCGCCGGCAGGTTAGGATGTA	0.647													11	34					0	0	0.00185496	0	0
TIMELESS	8914	broad.mit.edu	37	12	56811925	56811925	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:56811925G>A	uc001slf.2	-	27	3615	c.3447C>T	c.(3445-3447)TCC>TCT	p.S1149S		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	1149					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TACCCTCTGGGGATGCCAGGC	0.542													33	97					0	0	0.00111076	0	0
TIMELESS	8914	broad.mit.edu	37	12	56812082	56812082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:56812082G>A	uc001slf.2	-	27	3458	c.3290C>T	c.(3289-3291)TCT>TTT	p.S1097F		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	1097					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TTGACTCAAAGAAGCTGCTGC	0.547													20	88					0	0	0.00332997	0	0
BAZ2A	11176	broad.mit.edu	37	12	57000471	57000471	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57000471C>T	uc001slq.1	-	11	2339	c.2145G>A	c.(2143-2145)AAG>AAA	p.K715K	BAZ2A_uc001slp.1_Silent_p.K713K|BAZ2A_uc009zov.1_5'Flank|BAZ2A_uc009zow.1_Silent_p.K683K	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	715	Lys-rich.|Potential.				chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						GCCTCATCTTCTTCTTGCTTT	0.428													67	242					0	0	0.00361006	0	0
BAZ2A	11176	broad.mit.edu	37	12	57009263	57009263	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57009263A>C	uc001slq.1	-	3	465	c.271T>G	c.(271-273)TGT>GGT	p.C91G	BAZ2A_uc001slp.1_Missense_Mutation_p.C89G|BAZ2A_uc010sqr.1_Missense_Mutation_p.C91G|BAZ2A_uc009zow.1_Missense_Mutation_p.C89G	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	91					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						TTCCAGAGACAGTCGTAGGCC	0.542													9	35					0	0	0.000442599	0	0
ATP5B	506	broad.mit.edu	37	12	57038721	57038721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57038721G>A	uc001slr.2	-	3	434	c.329C>T	c.(328-330)ACT>ATT	p.T110I	SNORD59B_uc001sls.1_5'Flank	NM_001686	NP_001677	P06576	ATPB_HUMAN	mitochondrial ATP synthase beta subunit	110					angiogenesis|ATP hydrolysis coupled proton transport|regulation of intracellular pH|respiratory electron transport chain	cell surface|mitochondrial nucleoid|mitochondrial proton-transporting ATP synthase, catalytic core|plasma membrane	ATP binding|eukaryotic cell surface binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|hydrogen-exporting ATPase activity, phosphorylative mechanism|MHC class I protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)	1						CATAGCAATAGTCCTTACTGT	0.443													56	67					0	0	0.00361006	0	0
HSD17B6	8630	broad.mit.edu	37	12	57178711	57178711	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57178711T>C	uc001smg.1	+	4	757	c.647T>C	c.(646-648)ATG>ACG	p.M216T		NM_003725	NP_003716	O14756	H17B6_HUMAN	hydroxysteroid (17-beta) dehydrogenase 6	216					androgen biosynthetic process|androgen catabolic process	early endosome membrane|endoplasmic reticulum|microsome	binding|electron carrier activity|estradiol 17-beta-dehydrogenase activity|retinol dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			upper_aerodigestive_tract(1)|pancreas(1)	2					Succinic acid(DB00139)	ATGACAAACATGACACAGTCC	0.423													19	79					0	0	0.000958276	0	0
LRP1	4035	broad.mit.edu	37	12	57577214	57577214	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57577214C>A	uc001snd.2	+	35	6181	c.5715C>A	c.(5713-5715)CCC>CCA	p.P1905P		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1905	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GGGGAATTCCCCTGGATCCCA	0.552											OREG0021938	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	15					0.00307968	0.00853147	0.00307968	1	0
LRP1	4035	broad.mit.edu	37	12	57603862	57603862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57603862C>T	uc001snd.2	+	81	12956	c.12490C>T	c.(12490-12492)CCC>TCC	p.P4164S		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4164	EGF-like 16.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCTGCTGAGCCCCAGTGGGCC	0.617													7	24					0	0	0.00307968	0	0
R3HDM2	22864	broad.mit.edu	37	12	57648709	57648709	+	Silent	SNP	G	A	A	rs149678283		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57648709G>A	uc009zpm.1	-	22	2813	c.2778C>T	c.(2776-2778)CTC>CTT	p.L926L	R3HDM2_uc010srn.1_Intron|R3HDM2_uc001snu.2_Silent_p.L621L|R3HDM2_uc001snr.2_Silent_p.L653L|R3HDM2_uc001sns.2_Silent_p.L926L|R3HDM2_uc001snt.2_Silent_p.L940L|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	926						nucleus	nucleic acid binding			ovary(2)	2						ACAAGGCAGCGAGGTCCGAGT	0.612													8	27					0	0	0.00307968	0	0
INHBE	83729	broad.mit.edu	37	12	57849565	57849565	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57849565G>A	uc001snw.2	+	1	470	c.246G>A	c.(244-246)GGG>GGA	p.G82G		NM_031479	NP_113667	P58166	INHBE_HUMAN	activin beta E precursor	82					growth	extracellular region	growth factor activity|hormone activity			breast(2)|central_nervous_system(1)	3						TACAGCCAGGGAGTGTGGCTC	0.587											OREG0021944	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	9					0	0	0.000978159	0	0
GLI1	2735	broad.mit.edu	37	12	57865064	57865064	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57865064C>T	uc001snx.2	+	12	2619	c.2541C>T	c.(2539-2541)CTC>CTT	p.L847L	GLI1_uc009zpq.2_Silent_p.L719L	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	847					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CACAGCCTCTCTTTTCCCATT	0.612													7	21					0	0	0.000274275	0	0
KIF5A	3798	broad.mit.edu	37	12	57961391	57961391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:57961391G>A	uc001sor.1	+	8	912	c.704G>A	c.(703-705)GGG>GAG	p.G235E	KIF5A_uc010srr.1_Missense_Mutation_p.G146E	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	235	Kinesin-motor.|Microtubule-binding.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						GACCTGGCAGGGAGTGAGAAG	0.433													21	60					0	0	0.00278032	0	0
PPM1H	57460	broad.mit.edu	37	12	63042297	63042297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:63042297G>A	uc001srk.3	-	10	1666	c.1517C>T	c.(1516-1518)CCT>CTT	p.P506L		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	506	PP2C-like.						phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		ATGTATTAAAGGAATGACATA	0.527													6	39					0	0	0.00198382	0	0
AVPR1A	552	broad.mit.edu	37	12	63543679	63543679	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:63543679C>G	uc001sro.1	-	1	2912	c.938G>C	c.(937-939)TGG>TCG	p.W313S		NM_000706	NP_000697	P37288	V1AR_HUMAN	arginine vasopressin receptor 1A	313	Helical; Name=6; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|generation of precursor metabolites and energy	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity				0			BRCA - Breast invasive adenocarcinoma(9;0.193)	GBM - Glioblastoma multiforme(28;0.0569)	Conivaptan(DB00872)|Desmopressin(DB00035)|Felypressin(DB00093)|Terlipressin(DB02638)|Vasopressin(DB00067)	CCAGACAGACCACATCTGGAT	0.463													3	44					0	0	0.00024832	0	0
HELB	92797	broad.mit.edu	37	12	66718804	66718804	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:66718804C>G	uc001sti.2	+	11	2596	c.2568C>G	c.(2566-2568)ACC>ACG	p.T856T	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	856					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		GATCTTTGACCATTAATAATA	0.343													4	118					0	0	0.00024832	0	0
DYRK2	8445	broad.mit.edu	37	12	68052205	68052205	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:68052205C>T	uc001str.3	+	3	1920	c.1518C>T	c.(1516-1518)CCC>CCT	p.P506P	DYRK2_uc001sts.3_Silent_p.P433P	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	506	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		GTGATGATCCCCTTTTCCTTG	0.612													9	30					0	0	0.000442599	0	0
LYZ	4069	broad.mit.edu	37	12	69743908	69743908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:69743908G>A	uc001suw.2	+	2	212	c.157G>A	c.(157-159)GAG>AAG	p.E53K		NM_000239	NP_000230	P61626	LYSC_HUMAN	lysozyme precursor	53					cell wall macromolecule catabolic process|cytolysis|defense response to bacterium|inflammatory response	extracellular space	lysozyme activity|protein binding				0	all_epithelial(5;2.98e-35)|Lung NSC(4;9.93e-33)|all_lung(4;5.66e-31)|Breast(13;2.56e-06)|Esophageal squamous(21;0.187)		Epithelial(6;8.26e-19)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00503)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			GGCCAAATGGGAGAGTGGTTA	0.383													13	51					0	0	0.00316338	0	0
BEST3	144453	broad.mit.edu	37	12	70048977	70048977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:70048977C>T	uc001svg.2	-	10	1944	c.1717G>A	c.(1717-1719)GAA>AAA	p.E573K	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.E360K|BEST3_uc010stm.1_Missense_Mutation_p.E467K	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	573	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			AATATATTTTCCTCAGCGCTG	0.552													7	25					0	0	0.00198382	0	0
PTPRB	5787	broad.mit.edu	37	12	70928615	70928615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:70928615C>T	uc001swb.3	-	28	5578	c.5548G>A	c.(5548-5550)GGT>AGT	p.G1850S	uc001svz.2_Intron|PTPRB_uc010sto.1_Missense_Mutation_p.G1760S|PTPRB_uc010stp.1_Missense_Mutation_p.G1760S|PTPRB_uc001swc.3_Missense_Mutation_p.G2068S|PTPRB_uc001swa.3_Missense_Mutation_p.G1980S	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1850	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TAACATACACCGCATATCTTA	0.522													4	19					0	0	0.000602214	0	0
PTPRB	5787	broad.mit.edu	37	12	70954554	70954554	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:70954554C>T	uc001swb.3	-	15	3705	c.3675G>A	c.(3673-3675)ACG>ACA	p.T1225T	PTPRB_uc010sto.1_Silent_p.T1135T|PTPRB_uc010stp.1_Silent_p.T1135T|PTPRB_uc001swc.3_Silent_p.T1443T|PTPRB_uc001swa.3_Silent_p.T1355T|PTPRB_uc001swd.3_Silent_p.T1442T|PTPRB_uc009zrr.1_Silent_p.T1322T	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1225	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ACCGCCACTCCGTCAGGTCCT	0.488													5	14					0	0	0.00116845	0	0
PTPRR	5801	broad.mit.edu	37	12	71286612	71286612	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:71286612G>A	uc001swi.1	-	2	620	c.204C>T	c.(202-204)TCC>TCT	p.S68S		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	68	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		CTTCGGAAGAGGAATGGTAGC	0.458													12	58					0	0	0.00185496	0	0
LGR5	8549	broad.mit.edu	37	12	71977917	71977917	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:71977917C>T	uc001swl.2	+	18	2175	c.2127C>T	c.(2125-2127)TCC>TCT	p.S709S	LGR5_uc001swm.2_Silent_p.S685S|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	709	Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						ATGGCGCCTCCCCTCTCTGCC	0.552													28	156					0	0	0.000878237	0	0
LGR5	8549	broad.mit.edu	37	12	71978225	71978225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:71978225C>T	uc001swl.2	+	18	2483	c.2435C>T	c.(2434-2436)CCT>CTT	p.P812L	LGR5_uc001swm.2_Missense_Mutation_p.P788L|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	812	Helical; Name=7; (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GTCCCACTTCCTGCATGTCTC	0.423													59	284					0	0	0.00361006	0	0
TPH2	121278	broad.mit.edu	37	12	72335409	72335409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:72335409G>A	uc009zrw.1	+	2	292	c.151G>A	c.(151-153)GGA>AGA	p.G51R	TPH2_uc001swy.2_5'UTR	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	51					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	AGGCAACAAGGGAAGCAGCAA	0.413													7	19					0	0	0.00198382	0	0
TPH2	121278	broad.mit.edu	37	12	72338093	72338093	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:72338093T>C	uc009zrw.1	+	3	416	c.275T>C	c.(274-276)GTT>GCT	p.V92A	TPH2_uc001swy.2_Missense_Mutation_p.V2A	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	92	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	GTCAACATGGTTCATATTGAA	0.408													10	21					0	0	0.000978159	0	0
TPH2	121278	broad.mit.edu	37	12	72338444	72338444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:72338444C>T	uc009zrw.1	+	4	659	c.518C>T	c.(517-519)TCT>TTT	p.S173F	TPH2_uc001swy.2_Missense_Mutation_p.S83F	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	173					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	ATGTATGGTTCTGAGCTTGAT	0.483													8	36					0	0	0.000274275	0	0
TRHDE	29953	broad.mit.edu	37	12	73012738	73012738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:73012738C>T	uc001sxa.2	+	13	2284	c.2254C>T	c.(2254-2256)CTT>TTT	p.L752F		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	752	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GAAGGATTTTCTTCCTTGGCA	0.368													5	35					0	0	0.00307968	0	0
TRHDE	29953	broad.mit.edu	37	12	73056896	73056896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:73056896C>T	uc001sxa.2	+	19	3026	c.2996C>T	c.(2995-2997)ACT>ATT	p.T999I		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	999	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GCTGTGGAAACTGTCGAAGCC	0.388													10	20					0	0	0.000442599	0	0
KCNC2	3747	broad.mit.edu	37	12	75601362	75601362	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:75601362G>A	uc001sxg.1	-	2	946	c.402C>T	c.(400-402)TTC>TTT	p.F134F	KCNC2_uc009zry.2_Silent_p.F134F|KCNC2_uc001sxe.2_Silent_p.F134F|KCNC2_uc001sxf.2_Silent_p.F134F|KCNC2_uc010stw.1_Silent_p.F134F	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	134	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						GCTCCTCCTCGAAGAGCGGCC	0.662													12	20					0	0	0.00185496	0	0
SYT1	6857	broad.mit.edu	37	12	79679637	79679637	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:79679637C>T	uc001sys.2	+	6	908	c.237C>T	c.(235-237)ATC>ATT	p.I79I	SYT1_uc001syt.2_Silent_p.I79I|SYT1_uc001syu.2_Silent_p.I79I|SYT1_uc001syv.2_Silent_p.I79I	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	79	Helical; (Potential).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						GCTTTTGTATCTGTAAGAAAT	0.403													10	35					0	0	0.000673444	0	0
SYT1	6857	broad.mit.edu	37	12	79747310	79747310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:79747310C>T	uc001sys.2	+	10	1510	c.839C>T	c.(838-840)TCC>TTC	p.S280F	SYT1_uc001syt.2_Missense_Mutation_p.S280F|SYT1_uc001syu.2_Missense_Mutation_p.S277F|SYT1_uc001syv.2_Missense_Mutation_p.S280F	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	280	Cytoplasmic (Potential).|Phospholipid binding (Probable).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						ATCTGCTTCTCCCTTCGCTAC	0.388													16	72					0	0	0.000958276	0	0
MYF5	4617	broad.mit.edu	37	12	81111096	81111097	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:81111096_81111097GG>AA	uc001szg.2	+	1	389_390	c.254_255GG>AA	c.(253-255)CGG>CAA	p.R85Q		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	85	Basic motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						ATGGATCGGCGGAAGGCAGCCA	0.629													8	16					0	0	6.4e-05	0	0
MYF5	4617	broad.mit.edu	37	12	81112169	81112169	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:81112169G>A	uc001szg.2	+	2	669	c.534G>A	c.(532-534)AAG>AAA	p.K178K		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	178					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						GGTCCAGAAAGAGCAGTACTT	0.398													24	102					0	0	0.00178596	0	0
LIN7A	8825	broad.mit.edu	37	12	81283035	81283035	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:81283035G>A	uc001szj.1	-	2	389	c.196C>T	c.(196-198)CGA>TGA	p.R66*	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	66	L27.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						CATACCTCTCGAATAGCTGTA	0.343													14	25					0	0	0.00244969	0	0
C12orf12	196477	broad.mit.edu	37	12	91347786	91347786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:91347786C>T	uc001tbj.2	-	1	1168	c.734G>A	c.(733-735)GGA>GAA	p.G245E		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	245										central_nervous_system(1)|pancreas(1)	2						TTCCTGCAGTCCCCAGGTTTC	0.602													34	81					0	0	0.00375469	0	0
EPYC	1833	broad.mit.edu	37	12	91363844	91363844	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:91363844T>A	uc001tbk.2	-	6	868	c.775A>T	c.(775-777)AAT>TAT	p.N259Y		NM_004950	NP_004941	Q99645	EPYC_HUMAN	dermatan sulfate proteoglycan 3 precursor	259	LRR 5.				female pregnancy	proteinaceous extracellular matrix	glycosaminoglycan binding			skin(1)	1						GCTCGTAGATTTTCTGGGAGT	0.463													18	62					0	0	0.00121646	0	0
KERA	11081	broad.mit.edu	37	12	91449250	91449250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:91449250G>A	uc001tbl.2	-	2	1428	c.809C>T	c.(808-810)TCG>TTG	p.S270L		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	270	LRR 9.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						TTGATTGTGCGACAGTTGAAG	0.408													10	17					0	0	0.000978159	0	0
DCN	1634	broad.mit.edu	37	12	91546954	91546954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:91546954G>A	uc001tbs.2	-	5	759	c.665C>T	c.(664-666)TCC>TTC	p.S222F	DCN_uc001tbo.2_Missense_Mutation_p.S113F|DCN_uc001tbp.2_Missense_Mutation_p.S75F|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Missense_Mutation_p.S222F|DCN_uc001tbu.2_Missense_Mutation_p.S222F	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	222	LRR 7.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						TTCCGTAAGGGAAGGAGGAAG	0.353													15	67					0	0	0.000566183	0	0
DCN	1634	broad.mit.edu	37	12	91552258	91552258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:91552258C>T	uc001tbs.2	-	3	447	c.353G>A	c.(352-354)AGC>AAC	p.S118N	DCN_uc001tbo.2_Intron|DCN_uc001tbp.2_Intron|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Missense_Mutation_p.S118N|DCN_uc001tbu.2_Missense_Mutation_p.S118N	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	118	LRR 3.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						ACTAACTTTGCTAATTTTATT	0.363													18	90					0	0	0.00121646	0	0
PLXNC1	10154	broad.mit.edu	37	12	94575305	94575305	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:94575305C>T	uc001tdc.2	+	3	1536	c.1287C>T	c.(1285-1287)CTC>CTT	p.L429L		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	429	Extracellular (Potential).|Sema.				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TCTACAAACTCGTTCCTGATC	0.313													31	131					0	0	0.00375469	0	0
MIR492	574449	broad.mit.edu	37	12	95228213	95228213	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:95228213G>A	hsa-mir-492|MI0003131	+			c.40G>A			uc001tdk.2_RNA																	0						AGGACCTGCGGGACAAGATTC	0.532													9	21					0	0	0.000978159	0	0
FGD6	55785	broad.mit.edu	37	12	95501342	95501342	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:95501342G>A	uc001tdp.3	-	12	3554	c.3330C>T	c.(3328-3330)TTC>TTT	p.F1110F	FGD6_uc009zsx.2_Silent_p.F243F|FGD6_uc001tdq.1_Silent_p.F146F	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1110	PH 1.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CTCTTACCAGGAAAAACATTC	0.423													8	30					0	0	0.000673444	0	0
NTN4	59277	broad.mit.edu	37	12	96052866	96052866	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:96052866T>C	uc001tei.2	-	10	2332	c.1883A>G	c.(1882-1884)AAG>AGG	p.K628R	NTN4_uc009ztf.2_Missense_Mutation_p.K605R|NTN4_uc009ztg.2_Missense_Mutation_p.K591R	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	628					axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						TTAATGCTACTTGCACTCTCT	0.353													17	87					0	0	0.00121646	0	0
CCDC38	120935	broad.mit.edu	37	12	96292215	96292215	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:96292215G>A	uc001tek.1	-	7	796	c.562C>T	c.(562-564)CAA>TAA	p.Q188*		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	188	Potential.									skin(1)	1						GCTGTCATTTGGAGTTTGTTT	0.388													33	131					0	0	0.00327116	0	0
C12orf63	374467	broad.mit.edu	37	12	97078949	97078949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:97078949G>A	uc001tet.1	+	9	1300	c.1222G>A	c.(1222-1224)GAG>AAG	p.E408K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	408										skin(6)|ovary(1)	7						CTACAGTGAGGAGTTTCTGTC	0.493													8	23					0	0	0.000274275	0	0
C12orf63	374467	broad.mit.edu	37	12	97137619	97137619	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:97137619G>A	uc001tet.1	+	21	2841	c.2763G>A	c.(2761-2763)AAG>AAA	p.K921K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	921										skin(6)|ovary(1)	7						AGAAATTCAAGGAATCTCCCT	0.398													10	29					0	0	0.000442599	0	0
ANKS1B	56899	broad.mit.edu	37	12	99145163	99145163	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:99145163G>A	uc001tge.1	-	25	4059	c.3642C>T	c.(3640-3642)CCC>CCT	p.P1214P	ANKS1B_uc001tgf.1_Silent_p.P730P|ANKS1B_uc001tgk.2_Silent_p.P511P|ANKS1B_uc010svd.1_Silent_p.P220P|ANKS1B_uc001tgd.1_Silent_p.P380P|ANKS1B_uc009ztq.2_Silent_p.P116P|ANKS1B_uc010sve.1_Silent_p.P244P|ANKS1B_uc001tgh.3_Silent_p.P220P|ANKS1B_uc001tgi.2_Silent_p.P464P|ANKS1B_uc009ztr.2_Silent_p.P404P|ANKS1B_uc001tgj.2_Silent_p.P380P|ANKS1B_uc009ztp.2_Silent_p.P245P|ANKS1B_uc010svf.1_Silent_p.P244P|ANKS1B_uc001tgg.3_Silent_p.P312P|ANKS1B_uc010svg.1_Silent_p.P349P|ANKS1B_uc009zts.1_Silent_p.P440P	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	1214						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CGCGGGGCTTGGGGATGGGTT	0.493													7	24					0	0	0.00307968	0	0
DEPDC4	120863	broad.mit.edu	37	12	100660750	100660750	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:100660750G>A	uc001thi.2	-	1	108	c.105C>T	c.(103-105)AAC>AAT	p.N35N	SCYL2_uc009ztw.1_5'Flank|SCYL2_uc001thm.1_5'Flank|SCYL2_uc001thn.2_5'Flank|DEPDC4_uc001thh.1_RNA|DEPDC4_uc001thj.1_Silent_p.N35N|DEPDC4_uc009ztv.1_Silent_p.N35N|DEPDC4_uc001thk.1_Translation_Start_Site|DEPDC4_uc001thl.1_RNA	NM_152317	NP_689530	Q8N2C3	DEPD4_HUMAN	DEP domain containing 4	35					intracellular signal transduction						0						AACTTGGCCCGTTCAGCCCTG	0.587													19	53					0	0	0.00278032	0	0
ANO4	121601	broad.mit.edu	37	12	101477456	101477456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:101477456G>A	uc010svm.1	+	16	1968	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	ANO4_uc001thw.2_Missense_Mutation_p.E431K|ANO4_uc001thx.2_Missense_Mutation_p.E466K|ANO4_uc001thy.2_Intron	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	466	Extracellular (Potential).|Poly-Glu.					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TGTCCTTTAGGAAGAAATACG	0.378										HNSCC(74;0.22)			8	43					0	0	0.000274275	0	0
ANO4	121601	broad.mit.edu	37	12	101477564	101477564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:101477564C>T	uc010svm.1	+	16	2076	c.1504C>T	c.(1504-1506)CTT>TTT	p.L502F	ANO4_uc001thw.2_Missense_Mutation_p.L467F|ANO4_uc001thx.2_Missense_Mutation_p.L502F|ANO4_uc001thy.2_Intron	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	502	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATGCAGCAGACTTATCGTTTC	0.308										HNSCC(74;0.22)			8	37					0	0	0.000673444	0	0
ANO4	121601	broad.mit.edu	37	12	101480470	101480470	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:101480470C>T	uc010svm.1	+	17	2141	c.1569C>T	c.(1567-1569)ATC>ATT	p.I523I	ANO4_uc001thw.2_Silent_p.I488I|ANO4_uc001thx.2_Silent_p.I523I|ANO4_uc001thy.2_Silent_p.I43I	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	523	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TGTTCGGGATCGTCATTTACC	0.517										HNSCC(74;0.22)			15	55					0	0	0.000422831	0	0
ANO4	121601	broad.mit.edu	37	12	101505353	101505353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:101505353G>A	uc010svm.1	+	24	2887	c.2315G>A	c.(2314-2316)GGA>GAA	p.G772E	ANO4_uc001thw.2_Missense_Mutation_p.G737E|ANO4_uc001thx.2_Missense_Mutation_p.G772E|ANO4_uc001thy.2_Missense_Mutation_p.G292E	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	772	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATTTGGTATGGAATTCTTGAA	0.318										HNSCC(74;0.22)			13	40					0	0	0.00316338	0	0
ANO4	121601	broad.mit.edu	37	12	101520809	101520809	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:101520809G>A	uc010svm.1	+	27	3401	c.2829G>A	c.(2827-2829)AGG>AGA	p.R943R	ANO4_uc001thw.2_Silent_p.R908R|ANO4_uc001thx.2_Silent_p.R943R|ANO4_uc001thy.2_Silent_p.R463R	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	943	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						GAAAGGAGAGGAAGAAGAATG	0.483										HNSCC(74;0.22)			6	6					0	0	0.00116845	0	0
MYBPC1	4604	broad.mit.edu	37	12	102056135	102056135	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:102056135G>A	uc001tii.2	+	19	2060	c.1958_splice	c.e19-1	p.G653_splice	MYBPC1_uc001tig.2_Splice_Site_p.G678_splice|MYBPC1_uc010svq.1_Splice_Site_p.G640_splice|MYBPC1_uc001tih.2_Splice_Site_p.G678_splice|MYBPC1_uc001tij.2_Splice_Site_p.G653_splice|MYBPC1_uc010svr.1_Splice_Site_p.G653_splice|MYBPC1_uc010svs.1_Splice_Site_p.G653_splice|MYBPC1_uc010svt.1_Splice_Site_p.G641_splice|MYBPC1_uc010svu.1_Splice_Site_p.G634_splice|MYBPC1_uc001tik.2_Splice_Site_p.G627_splice	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3						cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						CATACCTGCAGGATATTTTAT	0.343													9	24					0	0	0.000442599	0	0
IGF1	3479	broad.mit.edu	37	12	102811671	102811671	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:102811671G>A	uc001tjp.3	-	4	732	c.513C>T	c.(511-513)ATC>ATT	p.I171I	IGF1_uc001tjn.2_Intron|IGF1_uc001tjm.2_Intron|IGF1_uc001tjo.2_Intron	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	171					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						TCTTTCCTCTGATCTGCAGAC	0.463													52	187					0	0	0.00361006	0	0
STAB2	55576	broad.mit.edu	37	12	104033936	104033936	+	Silent	SNP	C	T	T	rs144975292		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:104033936C>T	uc001tjw.2	+	9	1128	c.942C>T	c.(940-942)TTC>TTT	p.F314F		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	314	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity	p.F314F(1)		ovary(9)|skin(5)	14						ACCAGAATTTCGTACCTGGAG	0.448													27	44					0	0	0.001512	0	0
STAB2	55576	broad.mit.edu	37	12	104056728	104056728	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:104056728C>T	uc001tjw.2	+	18	2160	c.1974C>T	c.(1972-1974)GTC>GTT	p.V658V		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	658	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCTCCATTGTCCCGATTCTGC	0.448													14	65					0	0	0.00121646	0	0
STAB2	55576	broad.mit.edu	37	12	104089598	104089598	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:104089598C>T	uc001tjw.2	+	33	3744	c.3558C>T	c.(3556-3558)ATC>ATT	p.I1186I		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1186	Extracellular (Potential).|FAS1 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGAATTACATCAGGGAGAAGA	0.398													9	60					0	0	0.000978159	0	0
STAB2	55576	broad.mit.edu	37	12	104100610	104100610	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:104100610A>C	uc001tjw.2	+	38	4223	c.4037A>C	c.(4036-4038)CAG>CCG	p.Q1346P		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1346	Extracellular (Potential).|Laminin EGF-like 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCCCAATGCCAGCCCTGCCCA	0.547													9	31					0	0	0.00185496	0	0
STAB2	55576	broad.mit.edu	37	12	104126805	104126805	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:104126805A>C	uc001tjw.2	+	51	5491	c.5305A>C	c.(5305-5307)ATC>CTC	p.I1769L	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1769	Extracellular (Potential).|FAS1 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GCTGAGTGTCATCACCGATCC	0.562													8	21					0	0	0.000274275	0	0
NT5DC3	51559	broad.mit.edu	37	12	104171643	104171643	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:104171643G>A	uc010swe.1	-	14	1652	c.1611C>T	c.(1609-1611)TTC>TTT	p.F537F	NT5DC3_uc010swd.1_5'Flank	NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	537							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						GAGGGGTTCCGAAGGTGGGGG	0.587													18	26					0	0	0.00121646	0	0
CHST11	50515	broad.mit.edu	37	12	105151427	105151427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:105151427C>T	uc001tkx.1	+	4	1196	c.905C>T	c.(904-906)CCC>CTC	p.P302L	CHST11_uc001tky.2_Missense_Mutation_p.P297L|uc001tkz.2_5'Flank	NM_018413	NP_060883	Q9NPF2	CHSTB_HUMAN	carbohydrate sulfotransferase 11	302	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity				0						CTGAAGTTCCCCACCTATGCA	0.493													9	30					0	0	0.000442599	0	0
POLR3B	55703	broad.mit.edu	37	12	106890587	106890587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:106890587C>T	uc001tlp.2	+	25	3097	c.2875C>T	c.(2875-2877)CAC>TAC	p.H959Y	POLR3B_uc001tlq.2_Missense_Mutation_p.H901Y	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	959					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						CGGCAGATTCCACTACGGCAC	0.537													7	33					0	0	0.000274275	0	0
RFX4	5992	broad.mit.edu	37	12	107155102	107155102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:107155102C>T	uc001tlr.2	+	18	2129	c.2063C>T	c.(2062-2064)CCG>CTG	p.P688L	RFX4_uc001tlt.2_Missense_Mutation_p.P697L|RFX4_uc001tlv.2_Missense_Mutation_p.P594L	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	688					transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						TACACAAGCCCGTCTGTGCAT	0.532													9	33					0	0	0.000673444	0	0
RIC8B	55188	broad.mit.edu	37	12	107245347	107245347	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:107245347C>T	uc001tlx.2	+	7	1406	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	RIC8B_uc001tlw.2_Silent_p.F427F|RIC8B_uc001tly.2_Silent_p.F387F|RIC8B_uc001tlz.2_RNA|RIC8B_uc009zur.2_RNA	NM_018157	NP_060627	Q9NVN3	RIC8B_HUMAN	resistance to inhibitors of cholinesterase 8	427					regulation of G-protein coupled receptor protein signaling pathway	cell cortex|cytosol|plasma membrane	G-protein alpha-subunit binding|guanyl-nucleotide exchange factor activity			ovary(1)	1						CTGCTGAATTCCTTTTTGTCC	0.408													9	22					0	0	0.000978159	0	0
CMKLR1	1240	broad.mit.edu	37	12	108686311	108686311	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:108686311G>A	uc009zuw.2	-	3	620	c.429C>T	c.(427-429)CTC>CTT	p.L143L	CMKLR1_uc001tmw.2_Silent_p.L143L|CMKLR1_uc001tmv.2_Silent_p.L141L|CMKLR1_uc009zuv.2_Silent_p.L143L	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	143	Cytoplasmic (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						ACCAGACAGGGAGGAGCACAG	0.552													9	28					0	0	0.000442599	0	0
SELPLG	6404	broad.mit.edu	37	12	109017651	109017651	+	Missense_Mutation	SNP	G	A	A	rs63748999		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:109017651G>A	uc001tni.2	-	2	593	c.433C>T	c.(433-435)CCA>TCA	p.P145S	SELPLG_uc001tnh.2_Missense_Mutation_p.P135S|SELPLG_uc010sxe.1_Missense_Mutation_p.P161S	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	145	3.|Extracellular (Potential).|12 X 10 AA tandem repeats.				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						GCTGCCAGTGGAGTGGTCTGT	0.617													12	39					0	0	0.00185496	0	0
SSH1	54434	broad.mit.edu	37	12	109181809	109181810	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:109181809_109181810GG>AA	uc001tnm.2	-	15	3191_3192	c.3104_3105CC>TT	c.(3103-3105)CCC>CTT	p.P1035L	SSH1_uc001tnl.2_Missense_Mutation_p.P723L	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	1035	Interaction with YWHAG.				actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						TTTCTGGGGCGGGTTTCCCTGA	0.554													7	44					0	0	6.4e-05	0	0
MYO1H	283446	broad.mit.edu	37	12	109843817	109843817	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:109843817C>G	uc010sxn.1	+	7	892	c.892C>G	c.(892-894)CAT>GAT	p.H298D		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						CCCAGACACCCATGAGATCAA	0.512													3	37					0	0	6.4e-05	0	0
UBE3B	89910	broad.mit.edu	37	12	109945401	109945401	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:109945401C>T	uc001top.2	+	15	2086	c.1483C>T	c.(1483-1485)CTG>TTG	p.L495L	UBE3B_uc001toq.2_Silent_p.L495L|UBE3B_uc001tos.2_5'Flank|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Silent_p.L495L	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	495					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						GCTTCCCAAACTGTGGGCATT	0.493													12	58					0	0	0.00185496	0	0
TRPV4	59341	broad.mit.edu	37	12	110226501	110226501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:110226501G>A	uc001tpj.1	-	12	2007	c.1912C>T	c.(1912-1914)CCG>TCG	p.P638S	TRPV4_uc001tpg.1_Missense_Mutation_p.P604S|TRPV4_uc001tph.1_Missense_Mutation_p.P591S|TRPV4_uc001tpi.1_Missense_Mutation_p.P531S|TRPV4_uc001tpk.1_Missense_Mutation_p.P638S|TRPV4_uc001tpl.1_Missense_Mutation_p.P578S	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	638					actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TTGGCACACGGGTTCAGGAGG	0.502													5	32					0	0	0.00116845	0	0
C12orf76	400073	broad.mit.edu	37	12	110495058	110495059	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:110495058_110495059GG>AA	uc001tqd.1	-	4	599_600	c.234_235CC>TT	c.(232-237)CTCCCT>CTTTCT	p.P79S	C12orf76_uc001tqe.1_RNA|C12orf76_uc010sxx.1_RNA|uc001tqf.1_Intron	NM_207435	NP_997318	Q8N812	CL076_HUMAN	hypothetical protein LOC400073	79										large_intestine(1)	1						AGCTCTGCAGGGAGGATGTGCC	0.5													9	25					0	0	6.4e-05	0	0
HVCN1	84329	broad.mit.edu	37	12	111098996	111098996	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:111098996C>T	uc001trs.1	-	4	444	c.279G>A	c.(277-279)AGG>AGA	p.R93R	HVCN1_uc001trq.1_Silent_p.R93R|HVCN1_uc001trt.1_Silent_p.R93R|HVCN1_uc010syd.1_Silent_p.R73R	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	93	Cytoplasmic (Potential).				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						TGAACAGTTTCCTCAACATGC	0.657													20	24					0	0	0.00188189	0	0
CUX2	23316	broad.mit.edu	37	12	111701574	111701574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:111701574C>T	uc001tsa.1	+	4	385	c.232C>T	c.(232-234)CTT>TTT	p.L78F	CUX2_uc001tsb.1_Missense_Mutation_p.L133F	NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	78						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GGTGGTGGCCCTTAGTAAGAG	0.418													45	187					0	0	0.00361006	0	0
CUX2	23316	broad.mit.edu	37	12	111785719	111785719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:111785719C>T	uc001tsa.1	+	22	4204	c.4051C>T	c.(4051-4053)CCA>TCA	p.P1351S		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1351	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCCCCTCCTTCCAGGTGGATC	0.607													6	45					0	0	0.00307968	0	0
TRAFD1	10906	broad.mit.edu	37	12	112587634	112587634	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:112587634A>C	uc001ttp.2	+	9	1324	c.1238A>C	c.(1237-1239)GAG>GCG	p.E413A	TRAFD1_uc001tto.2_Missense_Mutation_p.E413A|TRAFD1_uc010syj.1_RNA	NM_006700	NP_006691	O14545	TRAD1_HUMAN	TRAF-type zinc finger domain containing 1	413					negative regulation of innate immune response	intracellular	protein binding|zinc ion binding				0						CAGCCTCAAGAGACCTCACCA	0.552													6	26					0	0	0.00198382	0	0
C12orf51	283450	broad.mit.edu	37	12	112600322	112600322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:112600322G>A	uc009zwc.2	-	69	11878	c.11860C>T	c.(11860-11862)CCA>TCA	p.P3954S		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CGAGAGTCTGGGGAACCTACA	0.557													7	21					0	0	0.00198382	0	0
PTPN11	5781	broad.mit.edu	37	12	112888197	112888197	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:112888197T>A	uc001ttx.2	+	3	593	c.213T>A	c.(211-213)TTT>TTA	p.F71L	PTPN11_uc001ttw.1_Missense_Mutation_p.F71L	NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	71	SH2 1.		F -> K (in acute myeloid leukemia; requires 2 nucleotide substitutions).|F -> L (in myelodysplastic syndrome).		axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding	p.F71L(5)|p.F71K(2)		haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						GGGAGAAATTTGCCACTTTGG	0.418			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				20	75					0	0	0.00152264	0	0
OAS2	4939	broad.mit.edu	37	12	113425085	113425085	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:113425085C>T	uc001tuj.2	+	2	560	c.420C>T	c.(418-420)TTC>TTT	p.F140F	OAS2_uc001tuh.2_Silent_p.F140F|OAS2_uc001tui.1_Silent_p.F140F	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	140	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						GAATCTCTTTCGAGGTGCTGG	0.493													10	35					0	0	0.00185496	0	0
DTX1	1840	broad.mit.edu	37	12	113532692	113532692	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:113532692C>T	uc001tuk.1	+	6	1662	c.1326C>T	c.(1324-1326)GGC>GGT	p.G442G		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	442	RING-type.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						GCCGCCTGGGCCGCTGTGGCC	0.642													7	36					0	0	0.000673444	0	0
RASAL1	8437	broad.mit.edu	37	12	113543681	113543681	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:113543681G>A	uc001tum.1	-	17	1958	c.1665C>T	c.(1663-1665)GTC>GTT	p.V555V	RASAL1_uc010syp.1_Silent_p.V556V|RASAL1_uc001tul.2_Silent_p.V555V|RASAL1_uc001tun.1_Silent_p.V557V|RASAL1_uc010syq.1_Silent_p.V556V|RASAL1_uc001tuo.3_Silent_p.V556V	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	555					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						CCCTGGCTGGGACACCAGCTT	0.627													14	49					0	0	0.00074312	0	0
RASAL1	8437	broad.mit.edu	37	12	113565983	113565983	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:113565983C>T	uc001tum.1	-	4	416	c.123G>A	c.(121-123)AGG>AGA	p.R41R	RASAL1_uc010syp.1_Silent_p.R41R|RASAL1_uc001tul.2_Silent_p.R41R|RASAL1_uc001tun.1_Silent_p.R41R|RASAL1_uc010syq.1_Silent_p.R41R|RASAL1_uc001tuo.3_Silent_p.R41R|RASAL1_uc010syr.1_Silent_p.R41R	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	41	C2 1.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						CAGTAGCTGTCCTGCAAAAGG	0.537													12	40					0	0	0.000978159	0	0
MED13L	23389	broad.mit.edu	37	12	116444160	116444160	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:116444160C>A	uc001tvw.2	-	12	2350	c.2295G>T	c.(2293-2295)GTG>GTT	p.V765V		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	765					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		TCCCATCAGGCACCGGCGTGG	0.413													12	53					2.61681e-11	7.33719e-11	0.00244969	1	0
RNFT2	84900	broad.mit.edu	37	12	117187937	117187937	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:117187937C>T	uc009zwn.2	+	4	608	c.375C>T	c.(373-375)TCC>TCT	p.S125S	RNFT2_uc001twb.3_Silent_p.S125S|RNFT2_uc001twa.3_Silent_p.S35S	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	125	Extracellular (Potential).|His-rich.					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		GCGGGGGCTCCCTGCTGCAGC	0.761													3	2					0	0	0.000602214	0	0
NOS1	4842	broad.mit.edu	37	12	117718614	117718614	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:117718614C>T	uc001twm.1	-	8	2126	c.1440G>A	c.(1438-1440)TGG>TGA	p.W480*		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	480					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCTGGGAGTTCCAGACTCGGA	0.622													7	22					0	0	0.00198382	0	0
KSR2	283455	broad.mit.edu	37	12	117962911	117962911	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:117962911G>A	uc001two.2	-	14	1933	c.1878C>T	c.(1876-1878)TTC>TTT	p.F626F		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	655					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACTCCTGAAGGAAGATGCTGG	0.607													7	39					0	0	0.00307968	0	0
KSR2	283455	broad.mit.edu	37	12	117962929	117962930	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:117962929_117962930GG>AA	uc001two.2	-	14	1914_1915	c.1859_1860CC>TT	c.(1858-1860)GCC>GTT	p.A620V		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	649					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGGTCTGGCTGGCCTTGCGTGG	0.584													7	38					0	0	6.4e-05	0	0
RFC5	5985	broad.mit.edu	37	12	118462717	118462717	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:118462717C>T	uc001twq.2	+	6	608	c.483C>T	c.(481-483)ATC>ATT	p.I161I	RFC5_uc010syx.1_Silent_p.I140I|RFC5_uc010syy.1_Silent_p.I140I|RFC5_uc010syz.1_Silent_p.I76I|RFC5_uc009zwr.2_Silent_p.I161I	NM_007370	NP_031396	P40937	RFC5_HUMAN	replication factor C 5 isoform 1	161					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGTCAAAGATCATCCCTGCCT	0.463													9	40					0	0	0.000274275	0	0
HSPB8	26353	broad.mit.edu	37	12	119631582	119631582	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:119631582G>A	uc001txb.2	+	3	1033	c.510G>A	c.(508-510)CAG>CAA	p.Q170Q	HSPB8_uc001txc.2_3'UTR	NM_014365	NP_055180	Q9UJY1	HSPB8_HUMAN	heat shock 22kDa protein 8	170					cell death|response to heat	cytoplasm|nucleus	identical protein binding|protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAGCTCCCCAGGTCCCTCCTT	0.522													8	38					0	0	0.00307968	0	0
CCDC60	160777	broad.mit.edu	37	12	119968742	119968742	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:119968742C>T	uc001txe.2	+	13	1890	c.1425C>T	c.(1423-1425)ATC>ATT	p.I475I	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	475										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CCAAAAAGATCCTGGTGAAAC	0.488													17	42					0	0	0.000958276	0	0
CIT	11113	broad.mit.edu	37	12	120151339	120151339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:120151339G>A	uc001txi.1	-	33	4348	c.4295C>T	c.(4294-4296)TCC>TTC	p.S1432F	CIT_uc001txh.1_Missense_Mutation_p.S951F|CIT_uc001txj.1_Missense_Mutation_p.S1474F	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1432					intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GAGACCTGGGGAGTTCATTTT	0.602													7	25					0	0	0.000442599	0	0
SPPL3	121665	broad.mit.edu	37	12	121248634	121248634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:121248634G>A	uc001tzd.2	-	2	560	c.79C>T	c.(79-81)CTT>TTT	p.L27F	SPPL3_uc009zwz.2_Missense_Mutation_p.L27F	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	27	Helical; (Potential).					integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TAGACTATAAGAAGAATGGAA	0.383													23	78					0	0	0.00178596	0	0
HNF1A	6927	broad.mit.edu	37	12	121431351	121431351	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:121431351G>A	uc001tzg.2	+	3	578	c.555G>A	c.(553-555)CTG>CTA	p.L185L	HNF1A_uc001tze.1_Silent_p.L185L|HNF1A_uc001tzf.2_Silent_p.L185L|HNF1A_uc010szn.1_Silent_p.L185L	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	185					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AGGGAGGGCTGATTGAAGAGC	0.597									Hepatic_Adenoma_Familial_Clustering_of				28	97					0	0	0.001512	0	0
OASL	8638	broad.mit.edu	37	12	121458759	121458759	+	Missense_Mutation	SNP	G	A	A	rs139160700	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:121458759G>A	uc001tzj.1	-	6	1156	c.1150C>T	c.(1150-1152)CGG>TGG	p.R384W	OASL_uc001tzk.1_3'UTR	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	384	Ubiquitin-like 1.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CTGGTCCTCCGGATTTTCTCT	0.542													38	98					0	0	0.00128727	0	0
KDM2B	84678	broad.mit.edu	37	12	121970721	121970721	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:121970721G>A	uc001uat.2	-	8	1025	c.921C>T	c.(919-921)TTC>TTT	p.F307F	KDM2B_uc001uas.2_Silent_p.F276F|KDM2B_uc001uau.2_Silent_p.F190F|KDM2B_uc001uav.3_Intron	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	307	JmjC.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						CGGAAGGGATGAAAAATGTGT	0.577													8	45					0	0	0.000274275	0	0
TMEM120B	144404	broad.mit.edu	37	12	122213562	122213562	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:122213562C>T	uc001ubc.3	+	12	1098	c.954C>T	c.(952-954)TTC>TTT	p.F318F	TMEM120B_uc009zxh.2_3'UTR|TMEM120B_uc001uba.1_5'Flank	NM_001080825	NP_001074294	A0PK00	T120B_HUMAN	transmembrane protein 120B	318	Helical; (Potential).					integral to membrane					0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;5.75e-05)|Epithelial(86;0.000128)|BRCA - Breast invasive adenocarcinoma(302;0.238)		TCGGCAACTTCCTGACCACGC	0.617											OREG0022207	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	65					0	0	0.00185496	0	0
GPR109B	8843	broad.mit.edu	37	12	123201251	123201251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:123201251C>T	uc001ucy.3	-	1	189	c.34G>A	c.(34-36)GAA>AAA	p.E12K	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	12	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	TTGTCTATTTCCAGAAAGTGA	0.527													11	101					0	0	0.00244969	0	0
DDX55	57696	broad.mit.edu	37	12	124093275	124093275	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:124093275G>A	uc001ufi.2	+	6	474	c.450G>A	c.(448-450)CGG>CGA	p.R150R	DDX55_uc001ufh.2_Silent_p.R3R|DDX55_uc001ufj.1_Silent_p.R3R|DDX55_uc001ufk.2_Silent_p.R3R	NM_020936	NP_065987	Q8NHQ9	DDX55_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	150	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000142)|Epithelial(86;0.000637)|all cancers(50;0.00772)		ACATGTTCCGGAGGAAGGCCG	0.527													26	81					0	0	0.00127121	0	0
DNAH10	196385	broad.mit.edu	37	12	124267767	124267767	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:124267767C>T	uc001uft.3	+	7	797	c.772C>T	c.(772-774)CAG>TAG	p.Q258*		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	258	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTGGCTGAATCAGATATCCAC	0.527													6	31					0	0	0.00116845	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138507	126138507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:126138507G>A	uc001uhe.1	+	9	2496	c.2488G>A	c.(2488-2490)GAA>AAA	p.E830K	TMEM132B_uc001uhf.1_Missense_Mutation_p.E342K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	830	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGCAGTCCAGGAATGGTTCCA	0.488													15	17					0	0	0.000422831	0	0
TMEM132D	121256	broad.mit.edu	37	12	129822329	129822329	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:129822329G>A	uc009zyl.1	-	4	1477	c.1149C>T	c.(1147-1149)ATC>ATT	p.I383I		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	383	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CCTCCACATCGATCTGCATGA	0.587													17	70					0	0	0.000958276	0	0
ULK1	8408	broad.mit.edu	37	12	132400954	132400954	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:132400954C>T	uc001uje.2	+	20	2158	c.1890C>T	c.(1888-1890)TCC>TCT	p.S630S		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	630					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CTGTGCCCTCCTTTGACTTCC	0.692													9	30					0	0	0.00136819	0	0
EP400	57634	broad.mit.edu	37	12	132505633	132505633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:132505633C>T	uc001ujn.2	+	22	4492	c.4457C>T	c.(4456-4458)GCC>GTC	p.A1486V	EP400_uc001ujl.2_Missense_Mutation_p.A1485V|EP400_uc001ujm.2_Intron	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1522	Poly-Ala.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GCAGCAGCAGCCCCGTTTCAG	0.488													10	66					0	0	0.00244969	0	0
POLE	5426	broad.mit.edu	37	12	133252321	133252321	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr12:133252321C>T	uc001uks.1	-	11	1150	c.1106G>A	c.(1105-1107)TGG>TAG	p.W369*	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Nonsense_Mutation_p.W342*	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	369					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		ACAGACTCACCAGTCAAAAAA	0.542								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					17	60					0	0	0.000958276	0	0
LOC284232	284232	broad.mit.edu	37	13	19412039	19412039	+	RNA	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:19412039T>C	uc010tcj.1	-	1		c.34071A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CTTGATGAAGTTGTTCATCAC	0.423													7	24					0	0	0.00307968	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19624104	19624104	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:19624104G>A	uc001umb.1	-	9		c.3379C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						CTCACCTGAGGGGATGAAGAG	0.592													8	32					0	0	0.00185496	0	0
TPTE2	93492	broad.mit.edu	37	13	20006662	20006662	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:20006662A>G	uc001umd.2	-	17	1384	c.1173T>C	c.(1171-1173)CCT>CCC	p.P391P	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Silent_p.P280P|TPTE2_uc001ume.2_Silent_p.P314P|TPTE2_uc009zzm.2_Silent_p.P62P|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Silent_p.P62P	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	391						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TCCGTCTTGGAGGGAGATTCC	0.373													4	31					0	0	0.000602214	0	0
TPTE2	93492	broad.mit.edu	37	13	20048070	20048070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:20048070G>A	uc001umd.2	-	7	587	c.376C>T	c.(376-378)CGA>TGA	p.R126*	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Nonsense_Mutation_p.R89*|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	126	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ACAAATACTCGAAGAAGAACA	0.259													13	39					0	0	0.00316338	0	0
PARP4	143	broad.mit.edu	37	13	25009128	25009128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:25009128G>A	uc001upl.2	-	31	4257	c.4151C>T	c.(4150-4152)CCC>CTC	p.P1384L		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1384					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		AGGTCCTGTGGGACAAGACGC	0.542													6	14					0	0	0.00116845	0	0
ATP12A	479	broad.mit.edu	37	13	25272817	25272817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:25272817G>A	uc001upp.2	+	12	1721	c.1534G>A	c.(1534-1536)GAC>AAC	p.D512N	ATP12A_uc010aaa.2_Missense_Mutation_p.D518N	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	512	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CGAGATGGATGACCCCCACGG	0.522													5	17					0	0	0.00307968	0	0
RNF17	56163	broad.mit.edu	37	13	25367433	25367433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:25367433G>A	uc001upr.2	+	10	1230	c.1189G>A	c.(1189-1191)GGA>AGA	p.G397R	RNF17_uc010tdd.1_Missense_Mutation_p.G256R|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.G397R|RNF17_uc001ups.2_Missense_Mutation_p.G336R|RNF17_uc001upq.1_Missense_Mutation_p.G397R	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	397					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ACCTCAGATGGGATCTAGCCC	0.378													19	54					0	0	0.00229938	0	0
ATP8A2	51761	broad.mit.edu	37	13	26153975	26153975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:26153975G>A	uc001uqk.2	+	22	2039	c.1897G>A	c.(1897-1899)GAT>AAT	p.D633N	ATP8A2_uc010tdi.1_Missense_Mutation_p.D593N|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.D143N	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	593	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		GGCTTATGCTGATCTCTCTGA	0.532													5	17					0	0	0.00116845	0	0
WASF3	10810	broad.mit.edu	37	13	27241696	27241696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:27241696C>T	uc001uqv.2	+	5	536	c.311C>T	c.(310-312)TCC>TTC	p.S104F	WASF3_uc001uqw.2_Missense_Mutation_p.S104F	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	104					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		TTCAAAAGTTCCACAGTCCAA	0.373													15	56					0	0	0.000422831	0	0
WASF3	10810	broad.mit.edu	37	13	27256818	27256818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:27256818C>T	uc001uqv.2	+	9	1283	c.1058C>T	c.(1057-1059)CCC>CTC	p.P353L	WASF3_uc001uqw.2_Missense_Mutation_p.P350L	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	353					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CCTGTGATTCCCTCAGCACAA	0.592													15	46					0	0	0.00316338	0	0
FLT1	2321	broad.mit.edu	37	13	28963985	28963985	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:28963985C>T	uc001usb.3	-	13	2202	c.1917G>A	c.(1915-1917)AGG>AGA	p.R639R	FLT1_uc010aar.1_Silent_p.R639R|FLT1_uc001usc.3_Silent_p.R639R|FLT1_uc010aas.1_RNA|FLT1_uc010aat.1_Silent_p.R122R	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	639	Ig-like C2-type 6.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TGTATACATTCCTGGCTCTGC	0.428													29	79					0	0	0.00178596	0	0
FLT1	2321	broad.mit.edu	37	13	29001422	29001422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:29001422G>A	uc001usb.3	-	10	1595	c.1310C>T	c.(1309-1311)TCG>TTG	p.S437L	FLT1_uc010aar.1_Missense_Mutation_p.S437L|FLT1_uc001usc.3_Missense_Mutation_p.S437L|FLT1_uc010tdp.1_Missense_Mutation_p.S437L	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	437	Ig-like C2-type 5.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GTCTGGAAACGATGACACGGC	0.512													6	16					0	0	0.00307968	0	0
FLT1	2321	broad.mit.edu	37	13	29005400	29005400	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:29005400G>A	uc001usb.3	-	7	1146	c.861C>T	c.(859-861)TCC>TCT	p.S287S	FLT1_uc010aar.1_Silent_p.S287S|FLT1_uc001usc.3_Silent_p.S287S|FLT1_uc010tdp.1_Silent_p.S287S	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	287	Extracellular (Potential).|Ig-like C2-type 3.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TGTTGGCATGGGAATTGCTTT	0.363													10	33					0	0	0.000673444	0	0
SLC46A3	283537	broad.mit.edu	37	13	29284912	29284912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:29284912G>A	uc001usi.2	-	3	2099	c.1129C>T	c.(1129-1131)CGT>TGT	p.R377C	SLC46A3_uc001usg.2_Missense_Mutation_p.R302C|SLC46A3_uc001usj.2_Missense_Mutation_p.R377C|SLC46A3_uc001ush.2_Missense_Mutation_p.R377C|SLC46A3_uc001usk.2_3'UTR	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	377	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		TCAGTCGAACGAACCACTTTT	0.388													16	79					0	0	0.000566183	0	0
MTUS2	23281	broad.mit.edu	37	13	29599065	29599065	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:29599065A>G	uc001usl.3	+	1	318	c.260A>G	c.(259-261)GAA>GGA	p.E87G		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	77						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TTCCATAAGGAATTTCACCAA	0.453													5	17					0	0	0.000602214	0	0
STARD13	90627	broad.mit.edu	37	13	33704318	33704318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:33704318C>T	uc001uuw.2	-	5	622	c.496G>A	c.(496-498)GGA>AGA	p.G166R	STARD13_uc001uuu.2_Missense_Mutation_p.G158R|STARD13_uc001uuv.2_Missense_Mutation_p.G48R|STARD13_uc001uux.2_Missense_Mutation_p.G131R|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.G151R	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	166					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		TTTCTGTCTCCTCGAGGGAGC	0.562													4	12					0	0	0.00024832	0	0
NBEA	26960	broad.mit.edu	37	13	36223864	36223864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:36223864C>T	uc001uvb.2	+	51	7986	c.7780C>T	c.(7780-7782)CCT>TCT	p.P2594S	NBEA_uc010abi.2_Missense_Mutation_p.P1250S|NBEA_uc010tee.1_Missense_Mutation_p.P387S|NBEA_uc010tef.1_Missense_Mutation_p.P387S|NBEA_uc001uvd.2_Missense_Mutation_p.P172S	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2594						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCTGAAGTTTCCTTCAAATTC	0.478													37	72					0	0	0.00222228	0	0
EXOSC8	11340	broad.mit.edu	37	13	37581124	37581124	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:37581124C>T	uc001uwa.2	+	8	668	c.403C>T	c.(403-405)CTA>TTA	p.L135L	EXOSC8_uc001uvz.2_RNA|EXOSC8_uc001uwb.2_Silent_p.L135L|EXOSC8_uc001uwc.2_RNA	NM_181503	NP_852480	Q96B26	EXOS8_HUMAN	exosome component 8	135					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	AU-rich element binding|identical protein binding			pancreas(1)	1		Lung NSC(96;6.57e-05)|Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.67e-07)|Epithelial(112;1.31e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00699)|BRCA - Breast invasive adenocarcinoma(63;0.0117)|GBM - Glioblastoma multiforme(144;0.0411)		TGTCTGGGTTCTATACTGTGA	0.378													20	46					0	0	0.00229938	0	0
CSNK1A1L	122011	broad.mit.edu	37	13	37678874	37678874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:37678874G>A	uc001uwm.1	-	1	928	c.520C>T	c.(520-522)CCG>TCG	p.P174S		NM_145203	NP_660204	Q8N752	KC1AL_HUMAN	casein kinase 1, alpha 1-like	174	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)	1		Lung NSC(96;7.97e-05)|Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.109)		all cancers(112;3.58e-07)|Epithelial(112;1.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00695)|BRCA - Breast invasive adenocarcinoma(63;0.0117)|GBM - Glioblastoma multiforme(144;0.0407)		TCTCTGTACGGTATGTGTTGC	0.453													13	42					0	0	0.00136819	0	0
DGKH	160851	broad.mit.edu	37	13	42774011	42774011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:42774011C>T	uc001uyl.1	+	20	2480	c.2459C>T	c.(2458-2460)TCG>TTG	p.S820L	DGKH_uc010tfh.1_Missense_Mutation_p.S820L|DGKH_uc001uym.1_Missense_Mutation_p.S820L|DGKH_uc010tfi.1_Missense_Mutation_p.S575L|DGKH_uc010tfj.1_Missense_Mutation_p.S675L|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.S675L|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	820					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		TTACAGAGATCGTACAAGAAT	0.333													10	31					0	0	0.000673444	0	0
AKAP11	11215	broad.mit.edu	37	13	42876501	42876501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:42876501C>T	uc001uys.1	+	8	3794	c.3619C>T	c.(3619-3621)CTT>TTT	p.L1207F		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1207					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TACACACATCCTTTCTCTTGC	0.418													14	50					0	0	0.00244969	0	0
TNFSF11	8600	broad.mit.edu	37	13	43148640	43148640	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:43148640C>T	uc001uyu.2	+	1	350	c.201C>T	c.(199-201)TTC>TTT	p.F67F	TNFSF11_uc001uyt.2_Intron	NM_003701	NP_003692	O14788	TNF11_HUMAN	tumor necrosis factor ligand superfamily, member	67	Helical; Signal-anchor for type II membrane protein; (Potential).				immune response|monocyte chemotaxis|osteoclast differentiation|positive regulation of bone resorption|positive regulation of corticotropin-releasing hormone secretion|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of homotypic cell-cell adhesion|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell activation	cytoplasm|extracellular space|integral to plasma membrane	cytokine activity|receptor activity|tumor necrosis factor receptor binding				0		Lung NSC(96;1.11e-05)|Breast(139;0.00868)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000249)|GBM - Glioblastoma multiforme(144;0.00119)|BRCA - Breast invasive adenocarcinoma(63;0.073)		TCGCCCTGTTCTTCTATTTCA	0.687													4	7					0	0	0.000602214	0	0
ZC3H13	23091	broad.mit.edu	37	13	46559534	46559534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:46559534G>A	uc010tfw.1	-	9	1624	c.1618C>T	c.(1618-1620)CGT>TGT	p.R540C	ZC3H13_uc001vas.1_Missense_Mutation_p.R540C|ZC3H13_uc001vat.1_Missense_Mutation_p.R540C	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	540	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		ATTTCCGTACGAGAACTTTCT	0.458													17	54					0	0	0.00152264	0	0
LPAR6	10161	broad.mit.edu	37	13	48985882	48985882	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:48985882C>T	uc010acu.2	-	1	1772	c.678G>A	c.(676-678)AAG>AAA	p.K226K	RB1_uc001vcb.2_Intron|LPAR6_uc001vcc.1_Intron|LPAR6_uc001vce.2_Silent_p.K226K|LPAR6_uc001vcf.2_Silent_p.K226K	NM_001162498	NP_001155970	P43657	LPAR6_HUMAN	G-protein coupled purinergic receptor P2Y5	226	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled	p.?(4)		ovary(4)	4						TTTTTAAAACCTTAGTTTTGT	0.249													5	20					0	0	0.000602214	0	0
SERPINE3	647174	broad.mit.edu	37	13	51915300	51915300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:51915300G>A	uc001vfh.2	+	1	133	c.73G>A	c.(73-75)GGA>AGA	p.G25R	SERPINE3_uc010tgp.1_Missense_Mutation_p.G25R	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	25					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						CCTCCGTGAAGGAATGACATT	0.532													5	25					0	0	0.000602214	0	0
THSD1	55901	broad.mit.edu	37	13	52971631	52971631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:52971631C>T	uc001vgo.2	-	3	1302	c.757G>A	c.(757-759)GAG>AAG	p.E253K	THSD1_uc001vgp.2_Missense_Mutation_p.E253K|THSD1_uc010tgz.1_Intron|THSD1_uc010aea.2_Intron	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	253	Extracellular (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		ACCCCGGACTCACATGTGAGT	0.557													6	24					0	0	0.00116845	0	0
DACH1	1602	broad.mit.edu	37	13	72063173	72063173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:72063173G>A	uc010thn.1	-	8	2101	c.1678C>T	c.(1678-1680)CCT>TCT	p.P560S	DACH1_uc010tho.1_Missense_Mutation_p.P412S|DACH1_uc010thp.1_Missense_Mutation_p.P358S	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	612					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AGTCCATCAGGAAACAGAAAA	0.463													34	76					0	0	0.00327116	0	0
DIS3	22894	broad.mit.edu	37	13	73349449	73349449	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:73349449A>G	uc001vix.3	-	6	1261	c.887T>C	c.(886-888)CTT>CCT	p.L296P	DIS3_uc001viy.3_Missense_Mutation_p.L266P|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	296					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		CTTGGGGAGAAGCTCCACAGC	0.413										Multiple Myeloma(4;0.011)			12	42					0	0	0.00244969	0	0
DZIP1	22873	broad.mit.edu	37	13	96263712	96263712	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:96263712G>A	uc001vmk.2	-	12	2202	c.1350C>T	c.(1348-1350)ATC>ATT	p.I450I	DZIP1_uc001vml.2_Silent_p.I450I	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	450					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			TGGGTTCACTGATACTGTTTA	0.438													10	37					0	0	0.000673444	0	0
NALCN	259232	broad.mit.edu	37	13	101890181	101890181	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:101890181G>A	uc001vox.1	-	12	1548	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F	NALCN_uc001voy.2_Silent_p.F168F|NALCN_uc001voz.2_Silent_p.F453F|NALCN_uc001vpa.2_Silent_p.F453F	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	453	Helical; Name=S3 of repeat II; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GTAGTAGTTCGAATTTGTGGA	0.348													38	93					0	0	0.000953801	0	0
ITGBL1	9358	broad.mit.edu	37	13	102105194	102105194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:102105194C>T	uc001vpb.2	+	1	229	c.10C>T	c.(10-12)CCA>TCA	p.P4S	ITGBL1_uc010agb.2_Missense_Mutation_p.P4S|ITGBL1_uc001vpc.3_5'UTR	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	4					cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CATGCGTCCCCCAGGCTTCAG	0.607													14	21					0	0	0.000566183	0	0
FGF14	2259	broad.mit.edu	37	13	102379087	102379087	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:102379087A>C	uc001vpe.2	-	4	482	c.482T>G	c.(481-483)TTG>TGG	p.L161W	FGF14_uc001vpf.2_Missense_Mutation_p.L166W	NM_004115	NP_004106	Q92915	FGF14_HUMAN	fibroblast growth factor 14 isoform 1A	161					cell death|cell-cell signaling|JNK cascade|nervous system development|signal transduction	nucleus	growth factor activity|heparin binding			ovary(2)|lung(1)|large_intestine(1)	4	all_neural(89;0.0239)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TTGTCTGTACAACATGGATGA	0.363													6	18					0	0	0.00307968	0	0
ERCC5	2073	broad.mit.edu	37	13	103459777	103459777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:103459777C>T	uc001vpu.1	+	1	282	c.160C>T	c.(160-162)CCA>TCA	p.P54S	BIVM_uc001vps.2_Missense_Mutation_p.P54S|BIVM_uc010agc.2_Intron|BIVM_uc001vpt.2_Missense_Mutation_p.P54S	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	Error:Variant_position_missing_in_P28715_after_alignment					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TGGTCATTATCCATGGAGTTG	0.448			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				10	28					0	0	0.00244969	0	0
ERCC5	2073	broad.mit.edu	37	13	103510651	103510651	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:103510651G>A	uc001vpw.2	+	6	998	c.555G>A	c.(553-555)GCG>GCA	p.A185A	ERCC5_uc001vpu.1_Silent_p.A639A|ERCC5_uc010tjb.1_Silent_p.A185A|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Silent_p.A17A	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	185					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ATCCTCAAGCGATAGATATTG	0.368			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				13	44					0	0	0.00316338	0	0
ERCC5	2073	broad.mit.edu	37	13	103515342	103515342	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:103515342C>T	uc001vpw.2	+	8	2286	c.1843C>T	c.(1843-1845)CTG>TTG	p.L615L	ERCC5_uc001vpu.1_Silent_p.L1069L|ERCC5_uc010tjb.1_Silent_p.L615L|ERCC5_uc010tjc.1_Intron|ERCC5_uc010tjd.1_Silent_p.L447L	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	615					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TGAGAATTTTCTGGAAACCAT	0.418			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				11	29					0	0	0.00136819	0	0
ING1	3621	broad.mit.edu	37	13	111367820	111367821	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:111367820_111367821CC>TT	uc001vri.2	+	1	462_463	c.30_31CC>TT	c.(28-33)TCCCCT>TCTTCT	p.P11S	CARS2_uc010tjm.1_5'Flank|uc001vre.2_5'Flank|ING1_uc001vrf.2_Intron|ING1_uc001vrg.2_Intron|ING1_uc001vrh.2_Intron	NM_005537	NP_005528	Q9UK53	ING1_HUMAN	inhibitor of growth family, member 1 isoform D	11					cell cycle|negative regulation of cell growth|negative regulation of cell proliferation	nucleus	zinc ion binding			ovary(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.188)			CTTATCATTCCCCTGCGGAACG	0.505													24	41					0	0	6.4e-05	0	0
ANKRD10	55608	broad.mit.edu	37	13	111558405	111558405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:111558405G>A	uc001vrn.2	-	3	565	c.430C>T	c.(430-432)CTT>TTT	p.L144F	ANKRD10_uc001vro.1_Missense_Mutation_p.L144F|ANKRD10_uc001vrp.1_Missense_Mutation_p.L144F	NM_017664	NP_060134	Q9NXR5	ANR10_HUMAN	ankyrin repeat domain 10	144	ANK 4.									central_nervous_system(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		all cancers(43;0.0882)|BRCA - Breast invasive adenocarcinoma(86;0.188)|Lung(89;0.208)			TTCGCCACAAGGGCACTGATG	0.433													5	10					0	0	0.00116845	0	0
ADPRHL1	113622	broad.mit.edu	37	13	114107681	114107681	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr13:114107681C>T	uc001vtq.1	-	1	159	c.72G>A	c.(70-72)AAG>AAA	p.K24K		NM_138430	NP_612439	Q8NDY3	ARHL1_HUMAN	ADP-ribosylhydrolase like 1 isoform 1	24					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.0195)|GBM - Glioblastoma multiforme(44;0.116)			TGCTGTTCTCCTTGCAGACAT	0.577													8	27					0	0	0.000274275	0	0
OR4N2	390429	broad.mit.edu	37	14	20295937	20295937	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:20295937G>A	uc010tkv.1	+	1	330	c.330G>A	c.(328-330)GGG>GGA	p.G110G		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTGGAGGAGGGGAGGGATTAC	0.522													16	30					0	0	0.00121646	0	0
OR4K2	390431	broad.mit.edu	37	14	20344609	20344609	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:20344609C>T	uc001vwh.1	+	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTATGTATTTCCTGCTTACCA	0.403													19	62					0	0	0.00121646	0	0
OR4K15	81127	broad.mit.edu	37	14	20444427	20444427	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:20444427G>A	uc010tkx.1	+	1	750	c.750G>A	c.(748-750)AGG>AGA	p.R250R		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	250	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTACAGTTAGGAATCGCTCCT	0.438													8	19					0	0	0.00307968	0	0
OR11G2	390439	broad.mit.edu	37	14	20665543	20665543	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:20665543C>T	uc010tlb.1	+	1	49	c.49C>T	c.(49-51)CTA>TTA	p.L17L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GATTCCCCATCTATGTTTGCA	0.343													6	10					0	0	0.000442599	0	0
OR11G2	390439	broad.mit.edu	37	14	20665672	20665672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:20665672G>A	uc010tlb.1	+	1	178	c.178G>A	c.(178-180)GAG>AAG	p.E60K		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	60	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TTGCCCCAGGGAGGGGCAGAT	0.527													4	10					0	0	0.00024832	0	0
OR11H4	390442	broad.mit.edu	37	14	20711637	20711637	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:20711637C>T	uc010tld.1	+	1	687	c.687C>T	c.(685-687)ATC>ATT	p.I229I		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		GATCCTATATCCTGTTACTAA	0.433													22	73					0	0	0.00229938	0	0
TTC5	91875	broad.mit.edu	37	14	20767022	20767022	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:20767022G>A	uc001vwt.2	-	5	630	c.573C>T	c.(571-573)TCC>TCT	p.S191S	TTC5_uc001vwu.2_Silent_p.S48S	NM_138376	NP_612385	Q8N0Z6	TTC5_HUMAN	tetratricopeptide repeat domain 5	191	TPR 3.				DNA repair	cytoplasm|nucleus	binding			ovary(1)	1	all_cancers(95;0.00092)		Epithelial(56;1.1e-06)|all cancers(55;8.07e-06)	GBM - Glioblastoma multiforme(265;0.0106)		AGAAGTAAAGGGAAAGATATG	0.413													10	38					0	0	0.00136819	0	0
TEP1	7011	broad.mit.edu	37	14	20845648	20845648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:20845648G>A	uc001vxe.2	-	41	5919	c.5879C>T	c.(5878-5880)TCC>TTC	p.S1960F	TEP1_uc010ahk.2_Missense_Mutation_p.S1303F|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.S1852F|TEP1_uc010tlh.1_Missense_Mutation_p.S298F	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1960	WD 8.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AGCCCCCTGGGAACCTAGAGA	0.582													8	24					0	0	0.00307968	0	0
RNASE11	122651	broad.mit.edu	37	14	21052493	21052493	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:21052493C>T	uc010ahv.2	-	2	326	c.141G>A	c.(139-141)CAG>CAA	p.Q47Q	RNASE11_uc010ahx.2_Silent_p.Q47Q|RNASE11_uc010ahw.2_Silent_p.Q47Q|RNASE11_uc001vxs.2_Silent_p.Q47Q	NM_145250	NP_660293	Q8TAA1	RNS11_HUMAN	ribonuclease, RNase A family, 11 (non-active)	47						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(3)	3	all_cancers(95;0.00238)	all_lung(585;0.235)	Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.0139)		TCTCAATGGTCTGTTTTTCTT	0.368													32	123					0	0	0.00375469	0	0
ANG	283	broad.mit.edu	37	14	21162135	21162135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:21162135C>T	uc001vxw.3	+	2	1012	c.412C>T	c.(412-414)CAC>TAC	p.H138Y	RNASE4_uc001vxx.3_Intron|RNASE4_uc001vxy.3_Intron|ANG_uc001vxz.2_Missense_Mutation_p.H138Y|RNASE4_uc001vya.2_Intron	NM_001145	NP_001136	P03950	ANGI_HUMAN	angiogenin, ribonuclease, RNase A family, 5	138		Proton donor.	H -> R (in ALS9).		actin filament polymerization|activation of phospholipase A2 activity|activation of phospholipase C activity|activation of protein kinase B activity|angiogenesis|cell communication|cell death|cell migration|diacylglycerol biosynthetic process|homeostatic process|negative regulation of smooth muscle cell proliferation|negative regulation of translation|oocyte maturation|ovarian follicle development|placenta development|positive regulation of endothelial cell proliferation|positive regulation of phosphorylation|positive regulation of protein secretion|response to hormone stimulus|response to hypoxia|rRNA transcription	angiogenin-PRI complex|basal lamina|extracellular space|growth cone|neuronal cell body|nucleolus	actin binding|copper ion binding|heparin binding|pancreatic ribonuclease activity|peptide binding|receptor binding|rRNA binding			ovary(1)	1	all_cancers(95;0.00387)	all_cancers(140;0.196)|all_epithelial(140;0.156)	Epithelial(56;5.13e-07)|all cancers(55;4.73e-06)	OV - Ovarian serous cystadenocarcinoma(311;3.25e-17)|GBM - Glioblastoma multiforme(265;5.56e-07)		CTTACCTGTCCACTTGGATCA	0.557													13	47					0	0	0.000422831	0	0
FLJ10357	55701	broad.mit.edu	37	14	21543585	21543585	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:21543585C>T	uc001vzp.2	+	4	1574	c.1545C>T	c.(1543-1545)GCC>GCT	p.A515A	FLJ10357_uc001vzn.1_Silent_p.A515A|FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_5'UTR	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	515					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		CAGAAGAGGCCCTTGCAGTCT	0.572													12	32					0	0	0.00136819	0	0
OR4E2	26686	broad.mit.edu	37	14	22133687	22133687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:22133687C>T	uc010tmd.1	+	1	391	c.391C>T	c.(391-393)CAC>TAC	p.H131Y		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CACTCCACTCCACTACCCCAA	0.483													21	49					0	0	0.00395357	0	0
OXA1L	5018	broad.mit.edu	37	14	23235899	23235899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:23235899C>T	uc001wgn.2	+	1	169	c.169C>T	c.(169-171)CTT>TTT	p.L57F	OXA1L_uc010tnc.1_Missense_Mutation_p.L57F|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.L57F|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		AGCAAGTCCTCTTCCGGGCAA	0.607													15	56					0	0	0.000422831	0	0
MYH7	4625	broad.mit.edu	37	14	23886167	23886167	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:23886167G>A	uc001wjx.2	-	33	4660	c.4554C>T	c.(4552-4554)TCC>TCT	p.S1518S		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1518	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCTTTCCGCTGGAACCCAACT	0.592													12	37					0	0	0.000422831	0	0
MYH7	4625	broad.mit.edu	37	14	23898176	23898176	+	Silent	SNP	G	A	A	rs45508293	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:23898176G>A	uc001wjx.2	-	14	1501	c.1395C>T	c.(1393-1395)TTC>TTT	p.F465F		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	465	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CGAAGATCTCGAAGCCAGCGA	0.448													13	13					0	0	0.00316338	0	0
LRRC16B	90668	broad.mit.edu	37	14	24523473	24523473	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:24523473T>C	uc001wlj.2	+	4	366	c.209T>C	c.(208-210)CTG>CCG	p.L70P		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	70										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		TTCAATGTCCTGGAGATCCGT	0.602													10	31					0	0	0.000673444	0	0
RABGGTA	5875	broad.mit.edu	37	14	24737609	24737609	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:24737609A>C	uc001wof.2	-	10	1446	c.1024T>G	c.(1024-1026)TGC>GGC	p.C342G	RABGGTA_uc001woe.2_RNA|RABGGTA_uc001wog.2_Missense_Mutation_p.C342G|RABGGTA_uc001woh.2_RNA|RABGGTA_uc001woi.2_RNA	NM_004581	NP_004572	Q92696	PGTA_HUMAN	Rab geranylgeranyltransferase alpha	342					visual perception		Rab geranylgeranyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(265;0.0184)		GAGTCCCGGCACCAGCCCTCC	0.617													4	17					0	0	0.00116845	0	0
RABGGTA	5875	broad.mit.edu	37	14	24739638	24739638	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:24739638G>A	uc001wof.2	-	3	563	c.141C>T	c.(139-141)TCC>TCT	p.S47S	RABGGTA_uc001woe.2_5'Flank|RABGGTA_uc001wog.2_Silent_p.S47S|RABGGTA_uc001woh.2_RNA|RABGGTA_uc001woi.2_RNA	NM_004581	NP_004572	Q92696	PGTA_HUMAN	Rab geranylgeranyltransferase alpha	47	PFTA 1.				visual perception		Rab geranylgeranyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(265;0.0184)		GTTCCAGCACGGACTCATCCA	0.502													7	19					0	0	0.00307968	0	0
HECTD1	25831	broad.mit.edu	37	14	31598272	31598272	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:31598272G>A	uc001wrc.1	-	25	4794	c.4305C>T	c.(4303-4305)GTC>GTT	p.V1435V	HECTD1_uc001wrb.1_5'UTR|HECTD1_uc001wrd.1_Silent_p.V903V	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1435	Ser-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		CTGTTTGAGGGACGTTTTCAG	0.443													21	69					0	0	0.00152264	0	0
ARHGAP5	394	broad.mit.edu	37	14	32560773	32560773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:32560773C>T	uc001wrl.2	+	2	1137	c.898C>T	c.(898-900)CAT>TAT	p.H300Y	ARHGAP5_uc001wrm.2_Missense_Mutation_p.H300Y|ARHGAP5_uc001wrn.2_Missense_Mutation_p.H300Y|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	300	FF 1.				cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		ATTAAAAAATCATCCTGATTA	0.313													34	173					0	0	0.000953801	0	0
NPAS3	64067	broad.mit.edu	37	14	33836458	33836458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:33836458G>A	uc001wru.2	+	4	516	c.452G>A	c.(451-453)GGA>GAA	p.G151E	NPAS3_uc001wrs.2_Missense_Mutation_p.G138E|NPAS3_uc001wrt.2_Missense_Mutation_p.G119E|NPAS3_uc001wrv.2_Missense_Mutation_p.G121E|NPAS3_uc001wrw.2_Missense_Mutation_p.G49E	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	151	PAS 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		GCACATTTGGGAAGCCACATT	0.313													7	13					0	0	0.000274275	0	0
BAZ1A	11177	broad.mit.edu	37	14	35253102	35253102	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:35253102A>C	uc001wsk.2	-	15	2431	c.1863T>G	c.(1861-1863)TGT>TGG	p.C621W	BAZ1A_uc001wsl.2_Missense_Mutation_p.C589W	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	621					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		GTAGCTTTCCACAGAGAGCAT	0.348													10	30					0	0	0.000442599	0	0
SDCCAG1	9147	broad.mit.edu	37	14	50295833	50295833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:50295833G>A	uc001wxc.2	-	13	1239	c.1171C>T	c.(1171-1173)CCT>TCT	p.P391S	SDCCAG1_uc010anj.1_Missense_Mutation_p.P391S|SDCCAG1_uc010tqi.1_Missense_Mutation_p.P391S|SDCCAG1_uc001wxe.2_Missense_Mutation_p.P349S|SDCCAG1_uc001wxd.1_5'UTR|SDCCAG1_uc010anq.1_Missense_Mutation_p.P162S	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	391						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		CTTGCAACAGGGTCTCCTTGA	0.398													31	102					0	0	0.00283554	0	0
SAV1	60485	broad.mit.edu	37	14	51107525	51107525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:51107525G>A	uc001wyg.1	-	5	1054	c.893C>T	c.(892-894)CCA>CTA	p.P298L	SAV1_uc001wyh.1_Missense_Mutation_p.P298L	NM_021818	NP_068590	Q9H4B6	SAV1_HUMAN	WW45 protein	298					hippo signaling cascade	cytoplasm|nucleus	identical protein binding			breast(1)	1	all_epithelial(31;0.000611)|Breast(41;0.0333)					AGTATGATATGGATTTGCAGG	0.438													13	35					0	0	0.00244969	0	0
NIN	51199	broad.mit.edu	37	14	51259445	51259445	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:51259445G>A	uc001wym.2	-	5	611	c.420C>T	c.(418-420)GCC>GCT	p.A140A	NIN_uc001wyi.2_Silent_p.A140A|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Silent_p.A140A|NIN_uc010tqp.1_Silent_p.A146A|NIN_uc001wyo.2_Silent_p.A140A|NIN_uc001wyp.1_Silent_p.A102A	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	140					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TGCAGTCACCGGCTGGGATGT	0.582			T	PDGFRB	MPD								12	28					0	0	0.00244969	0	0
TXNDC16	57544	broad.mit.edu	37	14	52955155	52955155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:52955155G>A	uc001wzs.2	-	12	1483	c.1034C>T	c.(1033-1035)TCT>TTT	p.S345F	TXNDC16_uc010tqu.1_Missense_Mutation_p.S340F|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	345					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					TTCCACATGAGATATTATTAA	0.299													6	27					0	0	0.00116845	0	0
DDHD1	80821	broad.mit.edu	37	14	53560128	53560128	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:53560128C>A	uc001xai.2	-	3	1277	c.1047G>T	c.(1045-1047)GTG>GTT	p.V349V	DDHD1_uc001xaj.2_Silent_p.V356V|DDHD1_uc001xah.2_Silent_p.V349V|DDHD1_uc001xag.2_5'UTR	NM_001160148	NP_001153620	Q8NEL9	DDHD1_HUMAN	DDHD domain containing 1 isoform c	349					lipid catabolic process	cytoplasm	hydrolase activity|metal ion binding			ovary(2)	2	Breast(41;0.037)					TGTGCCAGTCCACATGGTTTC	0.338													20	71					5.26018e-13	1.47781e-12	0.00188189	1	0
FBXO34	55030	broad.mit.edu	37	14	55818037	55818037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:55818037G>A	uc001xbu.2	+	2	1174	c.929G>A	c.(928-930)CGA>CAA	p.R310Q	FBXO34_uc001xbv.2_RNA|FBXO34_uc010aoo.2_Missense_Mutation_p.R310Q	NM_017943	NP_060413	Q9NWN3	FBX34_HUMAN	F-box only protein 34	310										ovary(2)|lung(2)|skin(1)	5						AGCTTCCGTCGAAATGTGGGC	0.537													16	55					0	0	0.000422831	0	0
KIAA0586	9786	broad.mit.edu	37	14	58953857	58953857	+	Missense_Mutation	SNP	C	T	T	rs77810875		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:58953857C>T	uc001xdv.3	+	21	3322	c.3049C>T	c.(3049-3051)CCT>TCT	p.P1017S	KIAA0586_uc010trr.1_Missense_Mutation_p.P1134S|KIAA0586_uc001xdt.3_Missense_Mutation_p.P1049S|KIAA0586_uc001xdu.3_Missense_Mutation_p.P1078S|KIAA0586_uc010trs.1_Missense_Mutation_p.P1008S|KIAA0586_uc010trt.1_Missense_Mutation_p.P953S|KIAA0586_uc010tru.1_Missense_Mutation_p.P953S	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	1017										ovary(1)	1						TATGGCTTTTCCTGTGAAAGA	0.368													12	37					0	0	0.00316338	0	0
C14orf149	112849	broad.mit.edu	37	14	59942848	59942848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:59942848C>T	uc001xee.1	-	3	802	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_144581	NP_653182	Q96EM0	PRCM_HUMAN	proline racemase-like	255							proline racemase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.14)	L-Proline(DB00172)	GTGGTTGGTTCCTTGGTATAA	0.333													21	57					0	0	0.000720815	0	0
PPM1A	5494	broad.mit.edu	37	14	60752381	60752381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:60752381C>T	uc010apn.2	+	4	1276	c.874C>T	c.(874-876)CCA>TCA	p.P292S	PPM1A_uc001xew.3_Missense_Mutation_p.P365S|PPM1A_uc001xex.3_Missense_Mutation_p.P292S|PPM1A_uc001xey.3_Missense_Mutation_p.P292S	NM_021003	NP_066283	P35813	PPM1A_HUMAN	protein phosphatase 1A isoform 1	292					cell cycle arrest|insulin receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein dephosphorylation|Wnt receptor signaling pathway	cytosol|nucleus|protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein serine/threonine phosphatase activity|signal transducer activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.046)		GATCTGTTTTCCAAATGCACC	0.383													7	32					0	0	0.000274275	0	0
KCNH5	27133	broad.mit.edu	37	14	63447701	63447701	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:63447701G>A	uc001xfx.2	-	6	882	c.831C>T	c.(829-831)GTC>GTT	p.V277V	KCNH5_uc001xfy.2_Silent_p.V277V|KCNH5_uc001xfz.1_Silent_p.V219V|KCNH5_uc001xga.2_Silent_p.V219V	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	277	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GGTCAGAAATGACCTCTCCAC	0.428													5	27					0	0	0.000602214	0	0
KCNH5	27133	broad.mit.edu	37	14	63453898	63453898	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:63453898C>T	uc001xfx.2	-	5	492	c.441G>A	c.(439-441)ACG>ACA	p.T147T	KCNH5_uc001xfy.2_Silent_p.T147T|KCNH5_uc001xfz.1_Silent_p.T89T|KCNH5_uc001xga.2_Silent_p.T89T	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	147	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GGGCAAATTTCGTCCAACCTT	0.388													16	27					0	0	0.000566183	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65210244	65210244	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:65210244G>A	uc001xho.1	+	17	3752	c.3483G>A	c.(3481-3483)GAG>GAA	p.E1161E	PLEKHG3_uc001xhn.1_Silent_p.E1105E|PLEKHG3_uc001xhp.2_Silent_p.E1282E|PLEKHG3_uc010aqh.1_Silent_p.E703E|PLEKHG3_uc001xhq.1_Silent_p.E666E	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	1161					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		GGCTGGAGGAGAGCAGTGGCC	0.637													6	13					0	0	0.00116845	0	0
FNTB	2342	broad.mit.edu	37	14	65390783	65390783	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:65390783T>C	uc010tsl.1	+	2	188	c.114T>C	c.(112-114)TTT>TTC	p.F38F	CHURC1_uc010tsj.1_Silent_p.F38F|CHURC1_uc010tsk.1_RNA|FNTB_uc010tsm.1_5'UTR|CHURC1_uc001xhv.1_Silent_p.F38F|CHURC1_uc001xhw.1_Silent_p.F38F	NM_002028	NP_002019	P49356	FNTB_HUMAN	farnesyltransferase, CAAX box, beta	Error:Variant_position_missing_in_P49356_after_alignment					protein farnesylation	microtubule associated complex	protein binding|protein farnesyltransferase activity			ovary(1)	1				all cancers(60;0.00115)|OV - Ovarian serous cystadenocarcinoma(108;0.00412)|BRCA - Breast invasive adenocarcinoma(234;0.011)		AGCGGGATTTTATGCTGATCA	0.368													15	35					0	0	0.00316338	0	0
TMEM229B	161145	broad.mit.edu	37	14	67940539	67940539	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:67940539C>T	uc001xjk.2	-	3	512	c.102G>A	c.(100-102)GTG>GTA	p.V34V	TMEM229B_uc001xjj.1_RNA	NM_182526	NP_872332	Q8NBD8	T229B_HUMAN	transmembrane protein 229B	34	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						TCAAGTTCACCACGAACTCCC	0.622													6	11					0	0	0.000274275	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68236426	68236426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:68236426G>A	uc001xka.2	-	29	5645	c.5506C>T	c.(5506-5508)CGC>TGC	p.R1836C	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.R1836C	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1836	FYVE-type.			R->A: Abolishes phosphatidylinositol 3- phosphate-binding and localization to the midbody.	cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		CCACAGCGGCGACAATGATGA	0.502													9	30					0	0	0.000442599	0	0
ACTN1	87	broad.mit.edu	37	14	69347701	69347701	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:69347701G>A	uc001xkl.2	-	17	2269	c.1959C>T	c.(1957-1959)ATC>ATT	p.I653I	ACTN1_uc001xkk.2_Silent_p.I249I|ACTN1_uc010ttb.1_Silent_p.I588I|ACTN1_uc001xkm.2_Silent_p.I653I|ACTN1_uc001xkn.2_Silent_p.I653I|ACTN1_uc010ttc.1_Silent_p.I238I	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	653	Spectrin 4.|Interaction with DDN.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		AGATCCTCCCGATCTCCTGCT	0.547													5	29					0	0	0.00198382	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72137886	72137886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:72137886C>T	uc001xms.2	+	8	2654	c.2306C>T	c.(2305-2307)CCT>CTT	p.P769L	SIPA1L1_uc001xmt.2_Missense_Mutation_p.P769L|SIPA1L1_uc001xmu.2_Missense_Mutation_p.P769L|SIPA1L1_uc001xmv.2_Missense_Mutation_p.P769L|SIPA1L1_uc010ttm.1_Missense_Mutation_p.P244L	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	769	Rap-GAP.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CCTCCCATTCCTAAAGGGGTC	0.463													41	87					0	0	0.00285205	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72138062	72138062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:72138062C>T	uc001xms.2	+	8	2830	c.2482C>T	c.(2482-2484)CCT>TCT	p.P828S	SIPA1L1_uc001xmt.2_Missense_Mutation_p.P828S|SIPA1L1_uc001xmu.2_Missense_Mutation_p.P828S|SIPA1L1_uc001xmv.2_Missense_Mutation_p.P828S|SIPA1L1_uc010ttm.1_Missense_Mutation_p.P303S	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	828	Rap-GAP.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CCCTATCGACCCTTCTGGCAA	0.512													8	26					0	0	0.00307968	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72190570	72190570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:72190570C>T	uc001xms.2	+	16	4826	c.4478C>T	c.(4477-4479)ACC>ATC	p.T1493I	SIPA1L1_uc001xmt.2_Missense_Mutation_p.T1472I|SIPA1L1_uc001xmu.2_Missense_Mutation_p.T1472I|SIPA1L1_uc001xmv.2_Missense_Mutation_p.T1493I|SIPA1L1_uc010ttm.1_Missense_Mutation_p.T947I|SIPA1L1_uc001xmw.2_Missense_Mutation_p.T258I	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1493					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CCCGAAGGAACCATAAACTCC	0.403													15	29					0	0	0.00244969	0	0
DCAF4	26094	broad.mit.edu	37	14	73409798	73409798	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:73409798C>T	uc001xng.2	+	6	748	c.528C>T	c.(526-528)CTC>CTT	p.L176L	DCAF4_uc001xnj.2_Silent_p.L176L|DCAF4_uc010ttr.1_Silent_p.L154L|DCAF4_uc001xnh.2_Silent_p.L76L|DCAF4_uc010tts.1_Intron|DCAF4_uc010ttt.1_5'UTR|DCAF4_uc001xni.2_Intron|DCAF4_uc001xnk.2_Silent_p.L176L	NM_015604	NP_056419	Q8WV16	DCAF4_HUMAN	DDB1 and CUL4 associated factor 4 isoform 1	176						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GATTTAACCTCATACTGGTGA	0.572													8	19					0	0	0.000274275	0	0
C14orf45	80127	broad.mit.edu	37	14	74500775	74500775	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:74500775C>T	uc010tup.1	+	4	519	c.396C>T	c.(394-396)TTC>TTT	p.F132F	C14orf45_uc001xpm.1_RNA	NM_025057	NP_079333	Q8ND07	CN045_HUMAN	hypothetical protein LOC80127	132	Potential.										0				BRCA - Breast invasive adenocarcinoma(234;0.00351)		AGGGACAGTTCCATCAAAAAG	0.378													9	30					0	0	0.000442599	0	0
NPC2	10577	broad.mit.edu	37	14	74947415	74947416	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:74947415_74947416GG>TT	uc001xpy.2	-	4	537_538	c.430_431CC>AA	c.(430-432)CCA>AAA	p.P144K	NPC2_uc010tus.1_Intron	NM_006432	NP_006423	P61916	NPC2_HUMAN	epididymal secretory protein E1 precursor	144					cholesterol efflux|cholesterol homeostasis|glycolipid transport|intracellular cholesterol transport|phospholipid transport|regulation of isoprenoid metabolic process|response to virus	extracellular region|lysosome	cholesterol binding|enzyme binding				0				BRCA - Breast invasive adenocarcinoma(234;0.00149)		GATCTGTACTGGGATTTCCCAG	0.421													10	214					0	0	6.4e-05	0	0
YLPM1	56252	broad.mit.edu	37	14	75276307	75276307	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:75276307C>T	uc001xqj.3	+	7	4870	c.4746C>T	c.(4744-4746)CTC>CTT	p.L1582L	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Silent_p.L65L	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1387					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		TCTATGGGCTCTGGGATACAA	0.353													9	8					0	0	0.000673444	0	0
NRXN3	9369	broad.mit.edu	37	14	79181283	79181283	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:79181283C>T	uc001xun.2	+	5	1217	c.726C>T	c.(724-726)TTC>TTT	p.F242F	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.F376F	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	615	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GCGACCTATTCATTGATGGGC	0.577													5	15					0	0	0.000602214	0	0
C14orf145	145508	broad.mit.edu	37	14	80971266	80971266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:80971266G>A	uc001xux.2	-	23	3341	c.3170C>T	c.(3169-3171)TCA>TTA	p.S1057L	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	1057						centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		GTTCACGTATGAAAATCTTGG	0.398													9	22					0	0	0.000673444	0	0
TSHR	7253	broad.mit.edu	37	14	81554364	81554364	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:81554364A>G	uc001xvd.1	+	4	540	c.384A>G	c.(382-384)CTA>CTG	p.L128L	TSHR_uc001xvb.1_Silent_p.L128L|TSHR_uc001xvc.2_Silent_p.L128L|TSHR_uc010tvs.1_Silent_p.L128L	NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	128	Extracellular (Potential).|LRR 2.				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	TCCCCCTCCTAAAGTTCCTGT	0.438			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						4	12					0	0	0.000602214	0	0
FLRT2	23768	broad.mit.edu	37	14	86089651	86089651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:86089651C>T	uc001xvr.2	+	2	2560	c.1793C>T	c.(1792-1794)TCC>TTC	p.S598F	FLRT2_uc010atd.2_Missense_Mutation_p.S598F	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	598	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		AAGGACAACTCCATCCTGGAG	0.478													15	42					0	0	0.000422831	0	0
GALC	2581	broad.mit.edu	37	14	88417021	88417021	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:88417021A>G	uc001xvt.2	-	11	1632	c.1233T>C	c.(1231-1233)TTT>TTC	p.F411F	GALC_uc010tvw.1_RNA|GALC_uc010tvx.1_Silent_p.F385F|GALC_uc010tvy.1_Silent_p.F388F|GALC_uc010tvz.1_Silent_p.F355F	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	411					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						CCTTAAGAACAAAGGTGGCAA	0.294													4	21					0	0	0.000602214	0	0
PTPN21	11099	broad.mit.edu	37	14	88945739	88945739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:88945739G>A	uc001xwv.3	-	13	2367	c.2036C>T	c.(2035-2037)ACC>ATC	p.T679I	PTPN21_uc010twc.1_Missense_Mutation_p.T475I	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	679						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						TGTCCTCTCGGTGAAAACGCT	0.682													6	15					0	0	0.00198382	0	0
EML5	161436	broad.mit.edu	37	14	89153569	89153569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:89153569C>T	uc001xxg.2	-	20	3031	c.2845G>A	c.(2845-2847)GGA>AGA	p.G949R	EML5_uc001xxh.1_Missense_Mutation_p.G88R	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	949						cytoplasm|microtubule				ovary(3)	3						CCTTTAGATCCTGGGGCCAAT	0.393													4	13					0	0	0.000602214	0	0
C14orf102	55051	broad.mit.edu	37	14	90755259	90755259	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:90755259G>A	uc001xyi.1	-	11	2491	c.2460C>T	c.(2458-2460)CTC>CTT	p.L820L	C14orf102_uc010atp.1_Silent_p.L325L|C14orf102_uc001xyj.1_Silent_p.L589L|C14orf102_uc001xyk.1_Silent_p.L12L	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	820							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		TGAGCTCACAGAGGTCAGAGT	0.522													11	24					0	0	0.000978159	0	0
CCDC88C	440193	broad.mit.edu	37	14	91791245	91791245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:91791245C>T	uc010aty.2	-	12	1319	c.1220G>A	c.(1219-1221)CGA>CAA	p.R407Q		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	407	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CTCCTCAATTCGTTTCTTATC	0.552													7	25					0	0	0.000274275	0	0
CATSPERB	79820	broad.mit.edu	37	14	92091266	92091266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:92091266C>T	uc001xzs.1	-	18	1968	c.1828G>A	c.(1828-1830)GAG>AAG	p.E610K	CATSPERB_uc010aub.1_Missense_Mutation_p.E132K	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	610					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CCAAAGGGCTCTTTCATTTCT	0.343													11	47					0	0	0.000978159	0	0
CATSPERB	79820	broad.mit.edu	37	14	92102861	92102861	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:92102861G>A	uc001xzs.1	-	17	1790	c.1650C>T	c.(1648-1650)ATC>ATT	p.I550I	CATSPERB_uc010aub.1_Silent_p.I72I	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	550					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				ATGCAAAAAAGATAATTTCAT	0.408													11	30					0	0	0.00136819	0	0
MOAP1	64112	broad.mit.edu	37	14	93649538	93649538	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:93649538G>A	uc001ybj.2	-	3	1420	c.1050C>T	c.(1048-1050)TTC>TTT	p.F350F	C14orf109_uc001ybk.3_5'Flank|C14orf109_uc010auo.2_5'Flank	NM_022151	NP_071434	Q96BY2	MOAP1_HUMAN	modulator of apoptosis 1	350					activation of caspase activity|apoptotic nuclear change	cytoplasm	protein homodimerization activity			skin(2)|ovary(1)	3		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.178)|all cancers(159;0.2)|COAD - Colon adenocarcinoma(157;0.204)		AGACTCAGGTGAAATTACCTT	0.303													8	26					0	0	0.000274275	0	0
ASB2	51676	broad.mit.edu	37	14	94413705	94413705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:94413705C>T	uc001ycc.1	-	5	1387	c.898G>A	c.(898-900)GGC>AGC	p.G300S	ASB2_uc001ycd.2_Missense_Mutation_p.G348S|ASB2_uc001yce.1_Missense_Mutation_p.G246S	NM_016150	NP_057234	Q96Q27	ASB2_HUMAN	ankyrin repeat and SOCS box-containing protein	300	ANK 8.				intracellular signal transduction					ovary(1)|pancreas(1)	2		all_cancers(154;0.13)		COAD - Colon adenocarcinoma(157;0.217)|Epithelial(152;0.232)		CTGTAGTTGCCCTTCTTGGAG	0.632													9	26					0	0	0.000673444	0	0
PPP4R4	57718	broad.mit.edu	37	14	94697620	94697620	+	Missense_Mutation	SNP	G	A	A	rs149895295		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:94697620G>A	uc001ycs.1	+	5	638	c.484G>A	c.(484-486)GAA>AAA	p.E162K		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	162						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						GTCTGTTATAGAAGTATTGCC	0.358													11	56					0	0	0.00244969	0	0
PPP4R4	57718	broad.mit.edu	37	14	94731805	94731805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:94731805C>T	uc001ycs.1	+	21	2433	c.2279C>T	c.(2278-2280)TCG>TTG	p.S760L		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	760						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						GTCACCCCATCGACAAGTAAG	0.373													11	19					0	0	0.000978159	0	0
SERPINA10	51156	broad.mit.edu	37	14	94754734	94754734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:94754734C>T	uc001yct.2	-	3	1347	c.881G>A	c.(880-882)GGA>GAA	p.G294E	SERPINA10_uc001ycu.3_Missense_Mutation_p.G294E	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	294					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GGTGGCATTTCCTTGGTAGGG	0.502													12	19					0	0	0.000978159	0	0
SERPINA11	256394	broad.mit.edu	37	14	94909110	94909110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:94909110C>T	uc001ydd.1	-	5	1162	c.1102G>A	c.(1102-1104)GGG>AGG	p.G368R		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	368					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GCCTCGGTCCCCTTCTCACTC	0.567													9	13					0	0	0.00136819	0	0
SERPINA12	145264	broad.mit.edu	37	14	94962795	94962795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:94962795G>A	uc001ydj.2	-	4	1616	c.820C>T	c.(820-822)CTT>TTT	p.L274F		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	274					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		TCATCAGGAAGGATGAAGATG	0.473													30	45					0	0	0.00283554	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030272	95030272	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:95030272C>T	uc001ydk.2	+	2	519	c.453C>T	c.(451-453)TTC>TTT	p.F151F	SERPINA4_uc010avd.2_Silent_p.F188F|SERPINA4_uc001ydl.2_Silent_p.F151F	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	151					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		ACCTGAAGTTCCTTGCAAAAT	0.542													17	43					0	0	0.000422831	0	0
DICER1	23405	broad.mit.edu	37	14	95577700	95577700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:95577700G>A	uc001ydw.2	-	15	2392	c.2210C>T	c.(2209-2211)CCA>CTA	p.P737L	DICER1_uc001ydv.2_Missense_Mutation_p.P727L|DICER1_uc001ydx.2_Missense_Mutation_p.P737L	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	737					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		TGGTCTTCCTGGAACACTGGT	0.428			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				31	84					0	0	0.000814825	0	0
TCL6	27004	broad.mit.edu	37	14	96136832	96136833	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:96136832_96136833CC>TT	uc001yeq.2	+	6	1781_1782	c.312_313CC>TT	c.(310-315)TGCCAT>TGTTAT	p.H105Y	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Missense_Mutation_p.H47Y|TCL6_uc001yeu.2_3'UTR|TCL6_uc001yev.2_Intron|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL6_uc010avk.1_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		AGAGCAGCTGCCATTGCAGATT	0.465			T	TRA@	T-ALL								5	15					0	0	6.4e-05	0	0
ATG2B	55102	broad.mit.edu	37	14	96811707	96811707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:96811707G>A	uc001yfi.2	-	3	706	c.341C>T	c.(340-342)CCT>CTT	p.P114L		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	114										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		CCAATACATAGGCTCAGAACC	0.338													8	11					0	0	0.00307968	0	0
SETD3	84193	broad.mit.edu	37	14	99927618	99927618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:99927618C>T	uc001ygc.2	-	4	426	c.256G>A	c.(256-258)GCC>ACC	p.A86T	SETD3_uc001ygd.2_Missense_Mutation_p.A86T|SETD3_uc001ygf.2_Missense_Mutation_p.A86T	NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	86	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				TTTTCAGAGGCCCATTTCATT	0.373													12	56					0	0	0.000978159	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102453932	102453932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:102453932C>T	uc001yks.2	+	9	2845	c.2681C>T	c.(2680-2682)TCC>TTC	p.S894F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	894	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CACTCCTATTCCAATTTGCCC	0.428													14	28					0	0	0.000958276	0	0
TRAF3	7187	broad.mit.edu	37	14	103336546	103336546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:103336546C>T	uc001ymc.1	+	3	361	c.8C>T	c.(7-9)TCG>TTG	p.S3L	TRAF3_uc001yme.1_Missense_Mutation_p.S3L|TRAF3_uc001ymd.1_Missense_Mutation_p.S3L|TRAF3_uc010txy.1_Missense_Mutation_p.S3L	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	3					apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		AAAATGGAGTCGAGTAAAAAG	0.493													21	63					0	0	0.00278032	0	0
ADAM6	8755	broad.mit.edu	37	14	106111114	106111114	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:106111114C>T	uc010tyt.1	-	3640		c.60647G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						GACCGATGGGCCCTTGGTGGA	0.672													6	46					0	0	0.000442599	0	0
ADAM6	8755	broad.mit.edu	37	14	106235781	106235781	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:106235781C>T	uc010tyt.1	-	3617		c.58066G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						TCTCCCACTCCACGGCGATGT	0.622													19	52					0	0	0.00152264	0	0
ADAM6	8755	broad.mit.edu	37	14	106757778	106757778	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:106757778C>T	uc010tyt.1	-	472		c.16287G>A								Parts of antibodies, mostly variable regions.												0						TAGGATTTTTCGTCATTCGAA	0.532													7	27					0	0	0.00198382	0	0
ADAM6	8755	broad.mit.edu	37	14	106815853	106815853	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:106815853C>T	uc010tyt.1	-	342		c.13306G>A								Parts of antibodies, mostly variable regions.												0						TTATTACTTCCATCATACCAT	0.517													10	54					0	0	0.00136819	0	0
ADAM6	8755	broad.mit.edu	37	14	106926339	106926339	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:106926339G>A	uc010tyt.1	-	235		c.10216C>T			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						ACTAATAAGAGAGACCCACTC	0.517													9	35					0	0	0.00136819	0	0
ADAM6	8755	broad.mit.edu	37	14	106967307	106967307	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr14:106967307C>T	uc010tyt.1	-	201		c.9134G>A								Parts of antibodies, mostly variable regions.												0						CCCCAGGCTTCTTCACCTCAG	0.557													6	17					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	15	20649654	20649654	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:20649654G>A	uc001ytg.2	-	18	2564	c.1855C>T	c.(1855-1857)CTA>TTA	p.L619L	uc010tyx.1_RNA|uc001yth.3_Silent_p.L619L|uc010tyy.1_Silent_p.L619L					RecName: Full=Putative HERC2-like protein 3;																		ACTCGGCCTAGGCCTGGAGGA	0.552													8	48					0	0	0.000274275	0	0
OR4M2	390538	broad.mit.edu	37	15	22368766	22368766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:22368766C>T	uc010tzu.1	+	1	191	c.191C>T	c.(190-192)GCT>GTT	p.A64V	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TTCCTGTTGGCTAATCTGGCC	0.403													11	151					0	0	0.000978159	0	0
OR4M2	390538	broad.mit.edu	37	15	22369418	22369419	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:22369418_22369419CC>TT	uc010tzu.1	+	1	843_844	c.843_844CC>TT	c.(841-846)TTCCCT>TTTTCT	p.P282S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTTTAATATTCCCTTTACGTAA	0.376													7	34					0	0	6.4e-05	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413716	22413716	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:22413716C>T	uc001yuf.2	+	1	15	c.15C>T	c.(13-15)TTC>TTT	p.F5F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TGGTGGACTTCCTCTCTGAGA	0.512													15	85					0	0	0.00229938	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413779	22413779	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:22413779C>T	uc001yuf.2	+	1	78	c.78C>T	c.(76-78)TTC>TTT	p.F26F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TCTTGCACTTCCTTGGAGGAG	0.493													18	78					0	0	0.00278032	0	0
Unknown	0	broad.mit.edu	37	15	22473063	22473063	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:22473063C>T	uc001yuj.1	-	2		c.208G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		TGATAGATTTCCCCAATCCAC	0.567													14	52					0	0	0.00244969	0	0
Unknown	0	broad.mit.edu	37	15	22473327	22473327	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:22473327G>A	uc001yuj.1	-	1		c.27C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		CTGCCACCAGGAGGAGAAAGA	0.507													7	28					0	0	0.00307968	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890471	23890471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:23890471G>A	uc001ywj.3	-	1	705	c.610C>T	c.(610-612)CCC>TCC	p.P204S		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GCAGCAGAGGGGCCTTTAAAG	0.577													15	61					0	0	0.00316338	0	0
C15orf2	23742	broad.mit.edu	37	15	24921861	24921861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:24921861G>A	uc001ywo.2	+	1	1321	c.847G>A	c.(847-849)GAA>AAA	p.E283K		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	283					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		AGTGCTGAATGAAGAGCCACC	0.602													22	26					0	0	0.00188189	0	0
C15orf2	23742	broad.mit.edu	37	15	24923762	24923762	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:24923762G>A	uc001ywo.2	+	1	3222	c.2748G>A	c.(2746-2748)CTG>CTA	p.L916L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	916					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTTTTATTCTGGGGAATCCAG	0.478													34	64					0	0	0.00375469	0	0
UBE3A	7337	broad.mit.edu	37	15	25585310	25585310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:25585310G>A	uc001zaq.2	-	10	2429	c.2429C>T	c.(2428-2430)ACG>ATG	p.T810M	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.T787M|UBE3A_uc001zas.2_Missense_Mutation_p.T807M|UBE3A_uc001zat.2_Missense_Mutation_p.T787M	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	810	HECT.				brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		GTCTGTGCCCGTTGTAAACTG	0.383													17	62					0	0	0.000566183	0	0
HERC2	8924	broad.mit.edu	37	15	28358367	28358367	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:28358367G>A	uc001zbj.2	-	92	14188	c.14082C>T	c.(14080-14082)ATC>ATT	p.I4694I	HERC2_uc001zbi.2_Silent_p.I383I	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4694	HECT.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CGGAAGGCTCGATGCCTTTAT	0.602													5	24					0	0	0.000602214	0	0
HERC2	8924	broad.mit.edu	37	15	28473473	28473473	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:28473473G>A	uc001zbj.2	-	35	5461	c.5355C>T	c.(5353-5355)TTC>TTT	p.F1785F		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1785					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TCACCAGGAGGAAGCGGGCTT	0.612													7	12					0	0	0.00307968	0	0
HERC2	8924	broad.mit.edu	37	15	28515964	28515964	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:28515964G>A	uc001zbj.2	-	10	1240	c.1134C>T	c.(1132-1134)ACC>ACT	p.T378T	HERC2_uc001zbl.1_Silent_p.T73T	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	378					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTTGTGGAAGGGTGAGGTACC	0.483													8	17					0	0	0.000274275	0	0
ARHGAP11A	9824	broad.mit.edu	37	15	32928677	32928677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:32928677C>T	uc001zgy.1	+	12	2425	c.1703C>T	c.(1702-1704)CCT>CTT	p.P568L	ARHGAP11A_uc010ubw.1_Missense_Mutation_p.P379L|ARHGAP11A_uc010ubx.1_Missense_Mutation_p.P379L	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	568					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		GAACTCACCCCTTCCAATTTA	0.373													50	66					0	0	0.00361006	0	0
TMEM85	51234	broad.mit.edu	37	15	34521959	34521959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:34521959G>A	uc001zhq.2	+	5	593	c.522G>A	c.(520-522)ATG>ATA	p.M174I	TMEM85_uc001zhr.2_RNA|TMEM85_uc001zhs.2_Missense_Mutation_p.G121R|TMEM85_uc010bat.2_Nonsense_Mutation_p.W31*	NM_016454	NP_057538	Q5J8M3	TMM85_HUMAN	transmembrane protein 85	174					apoptosis	integral to membrane					0		all_lung(180;1.15e-06)		all cancers(64;1.03e-17)|GBM - Glioblastoma multiforme(113;3.33e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)|Lung(196;0.217)		TTCAGAGAATGGAGTTCAGTG	0.388													14	59					0	0	0.00316338	0	0
AQR	9716	broad.mit.edu	37	15	35192911	35192911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:35192911G>A	uc001ziv.2	-	20	2336	c.2155C>T	c.(2155-2157)CTC>TTC	p.L719F		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	719						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		TCAATGGAGAGAAATGTATCA	0.413													8	53					0	0	0.000442599	0	0
BUB1B	701	broad.mit.edu	37	15	40468867	40468867	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:40468867C>T	uc001zkx.3	+	5	786	c.574C>T	c.(574-576)CAG>TAG	p.Q192*	BUB1B_uc010ucl.1_Nonsense_Mutation_p.Q55*	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	192	BUB1 N-terminal.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		ACTACAGTCCCAGCACCGGTA	0.373			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				10	29					0	0	0.000442599	0	0
BUB1B	701	broad.mit.edu	37	15	40498544	40498544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:40498544C>T	uc001zkx.3	+	15	2106	c.1894C>T	c.(1894-1896)CCT>TCT	p.P632S	BUB1B_uc010ucl.1_Missense_Mutation_p.P500S	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	632					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		GAAGGATCTCCCTTCTGATCC	0.453			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				13	42					0	0	0.00185496	0	0
BUB1B	701	broad.mit.edu	37	15	40509708	40509708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:40509708C>T	uc001zkx.3	+	21	2902	c.2690C>T	c.(2689-2691)CCC>CTC	p.P897L	PAK6_uc010bbl.2_5'UTR|PAK6_uc010bbm.2_5'UTR	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	897	Protein kinase.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		ATCCACGATCCCTATGATTGT	0.408			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				53	64					0	0	0.00361006	0	0
C15orf23	90417	broad.mit.edu	37	15	40675107	40675107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:40675107C>T	uc001zll.2	+	1	186	c.71C>T	c.(70-72)TCC>TTC	p.S24F	C15orf23_uc010ucp.1_Missense_Mutation_p.S24F|C15orf23_uc001zlo.2_Missense_Mutation_p.S24F|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	24						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GAGTGCGATTCCCACCCACTT	0.567													7	31					0	0	0.00198382	0	0
IVD	3712	broad.mit.edu	37	15	40707679	40707679	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:40707679C>T	uc001zls.3	+	9	1301	c.967C>T	c.(967-969)CAG>TAG	p.Q323*	IVD_uc001zlq.2_Nonsense_Mutation_p.Q293*|IVD_uc001zlr.2_Nonsense_Mutation_p.Q26*	NM_002225	NP_002216	P26440	IVD_HUMAN	isovaleryl Coenzyme A dehydrogenase isoform 1	320		FAD.			leucine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|isovaleryl-CoA dehydrogenase activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;1.52e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0808)		CGGCCACTTCCAGGTGAGCCG	0.532													14	10					0	0	0.00244969	0	0
CASC5	57082	broad.mit.edu	37	15	40949251	40949251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:40949251C>T	uc010bbs.1	+	24	6735	c.6574C>T	c.(6574-6576)CCT>TCT	p.P2192S	CASC5_uc010bbt.1_Missense_Mutation_p.P2166S	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2192	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		ggatcaagctcctccttcctc	0.07													9	6					0	0	0.000274275	0	0
SPINT1	6692	broad.mit.edu	37	15	41146691	41146691	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:41146691A>G	uc001zna.2	+	7	1289	c.1085A>G	c.(1084-1086)GAC>GGC	p.D362G	SPINT1_uc001znb.2_Missense_Mutation_p.D346G|SPINT1_uc001znc.2_Missense_Mutation_p.D346G|SPINT1_uc010ucs.1_Missense_Mutation_p.D353G	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	362	LDL-receptor class A.					extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		AACTGCCCCGACGCCTCCGAC	0.632													8	25					0	0	0.00307968	0	0
VPS18	57617	broad.mit.edu	37	15	41191637	41191637	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:41191637C>T	uc001zne.2	+	4	960	c.621C>T	c.(619-621)TCC>TCT	p.S207S		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	207					endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		CTGTGTGCTCCCTTGAGGCCG	0.612													11	50					0	0	0.000978159	0	0
EXD1	161829	broad.mit.edu	37	15	41482327	41482327	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:41482327C>T	uc001znk.2	-	9	882	c.691_splice	c.e9-1	p.E231_splice	EXD1_uc001znj.2_Silent_p.Q28Q|EXD1_uc010ucv.1_Splice_Site_p.E289_splice	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1						nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						CTGGATTTTCCTGGAGACAAT	0.333													37	27					0	0	0.00222228	0	0
RPAP1	26015	broad.mit.edu	37	15	41816304	41816304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:41816304C>T	uc001zod.2	-	16	2348	c.2224G>A	c.(2224-2226)GAA>AAA	p.E742K	RPAP1_uc001zoc.2_5'Flank	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	742						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CTGATGGTTTCAGCAGGGGTA	0.622													9	27					0	0	0.000442599	0	0
MGA	23269	broad.mit.edu	37	15	42028729	42028729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:42028729C>T	uc010ucy.1	+	13	4448	c.4267C>T	c.(4267-4269)CCT>TCT	p.P1423S	MGA_uc010ucz.1_Missense_Mutation_p.P1423S|MGA_uc010uda.1_Intron	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1423						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TCCATTGTCCCCTGGGAAAAT	0.463													13	6					0	0	0.00316338	0	0
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42127241	42127241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:42127241C>T	uc001zoo.3	+	3	332	c.292C>T	c.(292-294)CGC>TGC	p.R98C	JMJD7-PLA2G4B_uc001zom.2_5'UTR|JMJD7-PLA2G4B_uc001zon.2_Missense_Mutation_p.R98C|JMJD7-PLA2G4B_uc010bcn.2_Missense_Mutation_p.R98C|JMJD7-PLA2G4B_uc001zop.1_5'UTR|JMJD7-PLA2G4B_uc001zoq.3_5'Flank	NM_005090	NP_005081	P0C869	PA24B_HUMAN	JMJD7-PLA2G4B protein	Error:Variant_position_missing_in_P0C869_after_alignment					arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						GAGAGGGGATCGCTTCATGAT	0.632													15	30					0	0	0.000422831	0	0
TTBK2	146057	broad.mit.edu	37	15	43044692	43044692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:43044692G>A	uc001zqo.2	-	14	3191	c.2752C>T	c.(2752-2754)CAT>TAT	p.H918Y	TTBK2_uc010bcy.2_Missense_Mutation_p.H849Y	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	918					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		GAAACACAATGAAATAGTTCT	0.448													33	35					0	0	0.00375469	0	0
CCNDBP1	23582	broad.mit.edu	37	15	43483740	43483740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:43483740C>T	uc001zqv.2	+	8	958	c.727C>T	c.(727-729)CCA>TCA	p.P243S	CCNDBP1_uc001zqu.2_Missense_Mutation_p.P115S|CCNDBP1_uc010bdc.2_Missense_Mutation_p.P243S|CCNDBP1_uc010bdb.2_Missense_Mutation_p.P115S|CCNDBP1_uc010udl.1_Missense_Mutation_p.P82S|CCNDBP1_uc001zqw.2_RNA|CCNDBP1_uc001zqx.2_Missense_Mutation_p.P115S|CCNDBP1_uc010bdd.2_Missense_Mutation_p.P115S|CCNDBP1_uc001zqy.2_Missense_Mutation_p.P115S	NM_012142	NP_036274	O95273	CCDB1_HUMAN	cyclin D-type binding-protein 1 isoform 1	243	Interaction with TCF3.|Interaction with RPLP0.				cell cycle	cytoplasm|nucleus	protein binding			ovary(1)|kidney(1)	2		all_cancers(109;3.31e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.42e-07)		GCTCATAATCCCATGCCTTGC	0.493													19	19					0	0	0.00152264	0	0
EPB42	2038	broad.mit.edu	37	15	43500504	43500504	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:43500504C>T	uc001zra.3	-	8	1299	c.999G>A	c.(997-999)TGG>TGA	p.W333*	EPB42_uc001zqz.3_5'UTR|EPB42_uc010bde.2_Nonsense_Mutation_p.W178*|EPB42_uc001zrb.3_Nonsense_Mutation_p.W363*|EPB42_uc010udm.1_Nonsense_Mutation_p.W255*	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	333					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		GCCGCGTCATCCAGCACTCTG	0.527													4	19					0	0	0.00024832	0	0
COPS2	9318	broad.mit.edu	37	15	49436470	49436470	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:49436470C>T	uc001zxf.2	-	3	279	c.200G>A	c.(199-201)TGG>TAG	p.W67*	COPS2_uc001zxh.2_Nonsense_Mutation_p.W67*|COPS2_uc010ufa.1_Intron	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	67					cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		TTTAAATCCCCATTCTCCTTT	0.289													11	58					0	0	0.000978159	0	0
TMOD2	29767	broad.mit.edu	37	15	52060516	52060517	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:52060516_52060517GG>AA	uc002abk.2	+	3	405_406	c.184_185GG>AA	c.(184-186)GGC>AAC	p.G62N	TMOD2_uc002abl.3_Missense_Mutation_p.G62N|TMOD2_uc010bfb.2_Missense_Mutation_p.G18N	NM_014548	NP_055363	Q9NZR1	TMOD2_HUMAN	neuronal tropomodulin isoform a	62					nervous system development	cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(2)	2				all cancers(107;0.00435)		GGCAGCCACCGGCCCCTTTGAC	0.54													6	11					0	0	6.4e-05	0	0
TCF12	6938	broad.mit.edu	37	15	57384059	57384059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:57384059C>T	uc002aec.2	+	5	579	c.295C>T	c.(295-297)CCA>TCA	p.P99S	TCF12_uc010ugm.1_Missense_Mutation_p.P151S|TCF12_uc010ugn.1_Missense_Mutation_p.P95S|TCF12_uc002aea.2_Missense_Mutation_p.P99S|TCF12_uc010bfs.2_Intron|TCF12_uc002aeb.2_Missense_Mutation_p.P99S|TCF12_uc002aed.2_Missense_Mutation_p.P99S	NM_207038	NP_996921	Q99081	HTF4_HUMAN	transcription factor 12 isoform b	99					immune response|muscle organ development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(2)|lung(1)	8		Colorectal(260;0.0907)		all cancers(107;0.000313)|GBM - Glioblastoma multiforme(80;0.00878)|STAD - Stomach adenocarcinoma(283;0.239)		AGGCTTGTCCCCAACACCTTT	0.418			T	TEC	extraskeletal myxoid chondrosarcoma								11	40					0	0	0.00185496	0	0
CGNL1	84952	broad.mit.edu	37	15	57730232	57730232	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:57730232A>C	uc002aeg.2	+	2	111	c.35A>C	c.(34-36)CAG>CCG	p.Q12P	CGNL1_uc010bfw.2_Missense_Mutation_p.Q12P	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	12	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		CAACATGTGCAGCAGGAATAT	0.468													35	113					0	0	0.00128727	0	0
GCOM1	145781	broad.mit.edu	37	15	57910298	57910298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:57910298G>A	uc002aei.2	+	3	349	c.230G>A	c.(229-231)CGA>CAA	p.R77Q	GCOM1_uc002aej.2_Missense_Mutation_p.R77Q|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.R77Q|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.R77Q|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	77					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GGTGTGGTGCGAAGATCAGAT	0.408													9	23					0	0	0.000673444	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58252978	58252978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:58252978C>T	uc002aex.2	-	12	1532	c.1474G>A	c.(1474-1476)GGG>AGG	p.G492R	ALDH1A2_uc002aey.2_Missense_Mutation_p.G454R|ALDH1A2_uc010ugv.1_Missense_Mutation_p.G471R|ALDH1A2_uc010ugw.1_Missense_Mutation_p.G463R|ALDH1A2_uc002aew.2_Missense_Mutation_p.G396R	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	492					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	ATTTCTCTCCCATTTCCAGAC	0.383													6	33					0	0	0.00198382	0	0
MYO1E	4643	broad.mit.edu	37	15	59523928	59523928	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:59523928G>T	uc002aga.2	-	6	855	c.483C>A	c.(481-483)ACC>ACA	p.T161T		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	161	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TGTTCCGGACGGTCTTGGCGT	0.517													7	43					0.000274275	0.000764298	0.000274275	1	0
VPS13C	54832	broad.mit.edu	37	15	62165568	62165568	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:62165568A>G	uc002agz.2	-	78	10529	c.10455T>C	c.(10453-10455)GTT>GTC	p.V3485V	VPS13C_uc002aha.2_Silent_p.V3442V|VPS13C_uc002ahb.1_Silent_p.V3485V|VPS13C_uc002ahc.1_Silent_p.V3442V	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3485					protein localization					ovary(2)	2						AACCTTTCCCAACAGAACCGG	0.318													11	77					0	0	0.000422831	0	0
TLN2	83660	broad.mit.edu	37	15	63031708	63031708	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:63031708C>T	uc002alb.3	+	28	3849	c.3849C>T	c.(3847-3849)TTC>TTT	p.F1283F	TLN2_uc002alc.3_5'Flank	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1283					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TTGATGAATTCCTCGATGCTG	0.547													12	40					0	0	0.00185496	0	0
ZNF609	23060	broad.mit.edu	37	15	64967235	64967235	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:64967235A>G	uc002ann.2	+	4	2182	c.2182A>G	c.(2182-2184)AAA>GAA	p.K728E		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	728	Poly-Lys.					nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CAAGGACAAGAAAAAGAAAGA	0.493													13	83					0	0	0.00185496	0	0
ZNF609	23060	broad.mit.edu	37	15	64967429	64967429	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:64967429C>G	uc002ann.2	+	4	2376	c.2376C>G	c.(2374-2376)GCC>GCG	p.A792A		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	792						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AGGCTGAAGCCGACAAGATCT	0.542													22	13					0	0	0.00332997	0	0
DPP8	54878	broad.mit.edu	37	15	65773865	65773865	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:65773865G>T	uc002aov.2	-	9	2732	c.1154C>A	c.(1153-1155)CCT>CAT	p.P385H	DPP8_uc002aow.2_Missense_Mutation_p.P385H|DPP8_uc010uiv.1_RNA|DPP8_uc002aox.2_Missense_Mutation_p.P369H|DPP8_uc002aoy.2_Missense_Mutation_p.P385H|DPP8_uc002aoz.2_Missense_Mutation_p.P369H|DPP8_uc010bhj.2_Missense_Mutation_p.P385H|DPP8_uc002apa.2_Missense_Mutation_p.P282H|DPP8_uc010bhk.1_Intron	NM_130434	NP_569118	Q6V1X1	DPP8_HUMAN	dipeptidyl peptidase 8 isoform 1	385					immune response|proteolysis	cytoplasm|membrane|nucleus	aminopeptidase activity|dipeptidyl-peptidase activity|serine-type peptidase activity			ovary(1)	1						TTTTCCCTCAGGAGTCCATCC	0.333													9	196					0.00185496	0.00515509	0.00185496	1	0
LBXCOR1	390598	broad.mit.edu	37	15	68120257	68120257	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:68120257C>T	uc002aqy.1	+	3	1959	c.1959C>T	c.(1957-1959)CCC>CCT	p.P653P		NM_001031807	NP_001026977	P84550	SKOR1_HUMAN	transcriptional corepressor Corl1	697					negative regulation of BMP signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|dendrite|neuronal cell body|nucleus	nucleotide binding|SMAD binding|transcription repressor activity				0						CCACTGGACCCCCTTCCGCCA	0.617													4	4					0	0	0.000602214	0	0
SPESP1	246777	broad.mit.edu	37	15	69222999	69222999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:69222999C>T	uc002arn.1	+	1	135	c.7C>T	c.(7-9)CCC>TCC	p.P3S	NOX5_uc002arp.1_5'UTR|NOX5_uc002arq.1_5'UTR|NOX5_uc010bid.1_5'UTR|NOX5_uc002aro.2_RNA	NM_145658	NP_663633	Q6UW49	SPESP_HUMAN	sperm equatorial segment protein 1 precursor	3					multicellular organismal development	acrosomal vesicle					0						GCCTATGAAGCCCTTAGTCCT	0.622													16	74					0	0	0.000566183	0	0
UACA	55075	broad.mit.edu	37	15	70959232	70959232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:70959232G>A	uc002asr.2	-	16	3895	c.3791C>T	c.(3790-3792)GCC>GTC	p.A1264V	UACA_uc010uke.1_Missense_Mutation_p.A1155V|UACA_uc002asq.2_Missense_Mutation_p.A1251V|UACA_uc010bin.1_Missense_Mutation_p.A1239V	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	1264	Potential.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						CTTCTTTTTGGCATGCAAAAC	0.353													45	89					0	0	0.00361006	0	0
LRRC49	54839	broad.mit.edu	37	15	71211413	71211413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:71211413C>T	uc002asw.2	+	7	839	c.592C>T	c.(592-594)CAT>TAT	p.H198Y	LRRC49_uc002asu.2_Missense_Mutation_p.H188Y|LRRC49_uc002asx.2_Missense_Mutation_p.H154Y|LRRC49_uc010ukf.1_Missense_Mutation_p.H203Y|LRRC49_uc002asy.2_5'UTR|LRRC49_uc002asz.2_Missense_Mutation_p.H170Y	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	198	LRR 4.					cytoplasm|microtubule				ovary(1)	1						AAATATTAATCATTTGTGTGA	0.313													14	75					0	0	0.000422831	0	0
LRRC49	54839	broad.mit.edu	37	15	71305224	71305224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:71305224C>T	uc002asw.2	+	14	1922	c.1675C>T	c.(1675-1677)CGT>TGT	p.R559C	LRRC49_uc002asu.2_Missense_Mutation_p.R549C|LRRC49_uc002asx.2_Missense_Mutation_p.R515C|LRRC49_uc010ukf.1_Missense_Mutation_p.R564C|LRRC49_uc002asy.2_Missense_Mutation_p.R265C|LRRC49_uc002asz.2_Missense_Mutation_p.R531C	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	559						cytoplasm|microtubule				ovary(1)	1						ACCCCAGTATCGTCTGATTTC	0.363													9	60					0	0	0.000442599	0	0
GRAMD2	196996	broad.mit.edu	37	15	72455749	72455749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:72455749G>A	uc002atq.2	-	10	838	c.814C>T	c.(814-816)CCT>TCT	p.P272S	GRAMD2_uc010bis.2_Missense_Mutation_p.P272S|GRAMD2_uc010ukh.1_Missense_Mutation_p.P66S	NM_001012642	NP_001012660	Q8IUY3	GRAM2_HUMAN	GRAM domain containing 2	272						integral to membrane					0						GGGCAGGCAGGACCCCAGCCT	0.532													32	93					0	0	0.000953801	0	0
PARP6	56965	broad.mit.edu	37	15	72553027	72553027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:72553027G>A	uc002auc.2	-	9	1007	c.548C>T	c.(547-549)TCT>TTT	p.S183F	PARP6_uc002aua.2_Missense_Mutation_p.S48F|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.S183F	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	183							NAD+ ADP-ribosyltransferase activity				0						GAAACTGGGAGACCTGCAGAG	0.498													14	101					0	0	0.00244969	0	0
TMEM202	338949	broad.mit.edu	37	15	72699517	72699517	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:72699517A>G	uc002auq.2	+	4	578	c.578A>G	c.(577-579)TAT>TGT	p.Y193C	TMEM202_uc002aur.2_Intron	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	193	Helical; (Potential).					integral to membrane				central_nervous_system(1)|skin(1)	2						CTATGGACCTATTATCTTAAC	0.488													16	75					0	0	0.000422831	0	0
ADPGK	83440	broad.mit.edu	37	15	73052767	73052767	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:73052767G>A	uc002avg.3	-	4	718	c.624C>T	c.(622-624)CTC>CTT	p.L208L	ADPGK_uc010ukw.1_Silent_p.L150L|ADPGK_uc002avf.3_Silent_p.L208L|ADPGK_uc002avi.3_Silent_p.L86L|ADPGK_uc002avh.3_5'UTR	NM_031284	NP_112574	Q9BRR6	ADPGK_HUMAN	ADP-dependent glucokinase	208	ADPK.				glycolysis	extracellular region	ADP-specific glucokinase activity|metal ion binding				0						ACTCTAAAATGAGGTGGAACT	0.458													34	145					0	0	0.00128727	0	0
ISLR2	57611	broad.mit.edu	37	15	74425652	74425652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:74425652G>A	uc002axd.2	+	4	1326	c.557G>A	c.(556-558)GGC>GAC	p.G186D	ISLR2_uc002axe.2_Missense_Mutation_p.G186D|ISLR2_uc010bjg.2_Missense_Mutation_p.G186D|ISLR2_uc010bjf.2_Missense_Mutation_p.G186D	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	186	Extracellular (Potential).|LRRCT.				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						TTCCACTGCGGCTGCGGCCTT	0.662													12	73					0	0	0.00244969	0	0
ISLR	3671	broad.mit.edu	37	15	74467801	74467801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:74467801C>T	uc002axg.1	+	2	884	c.602C>T	c.(601-603)TCC>TTC	p.S201F	ISLR_uc002axh.1_Missense_Mutation_p.S201F	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	201	LRRCT.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						ACGGCCGTGTCCATCCCGGAG	0.667													10	16					0	0	0.00136819	0	0
C15orf39	56905	broad.mit.edu	37	15	75500482	75500482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:75500482C>T	uc002azp.3	+	2	2413	c.2093C>T	c.(2092-2094)CCC>CTC	p.P698L	C15orf39_uc002azq.3_Missense_Mutation_p.P698L|C15orf39_uc002azr.3_Missense_Mutation_p.P96L	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	698											0						GCTCAACAGCCCTTGTCTGTG	0.527													5	27					0	0	0.00307968	0	0
MAN2C1	4123	broad.mit.edu	37	15	75652945	75652945	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:75652945G>A	uc002baf.2	-	13	1562	c.1545C>T	c.(1543-1545)TTC>TTT	p.F515F	MAN2C1_uc002bag.2_Silent_p.F515F|MAN2C1_uc002bah.2_Silent_p.F515F|MAN2C1_uc010bkk.2_Silent_p.F416F|MAN2C1_uc010umi.1_Silent_p.F297F	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	515					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						GCAGCTCCAAGAAGAGCTCCC	0.587													6	47					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	15	76073326	76073326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:76073326G>A	uc010umm.1	+	7	519	c.442G>A	c.(442-444)GGC>AGC	p.G148S	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		GGATCTGGCTGGCCGCCTGCA	0.532													5	39					0	0	0.00307968	0	0
SCAPER	49855	broad.mit.edu	37	15	76646476	76646476	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:76646476G>A	uc002bby.2	-	29	3920	c.3861C>T	c.(3859-3861)ATC>ATT	p.I1287I	SCAPER_uc010bkr.2_Silent_p.I545I|SCAPER_uc002bbx.2_Silent_p.I1041I	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	1286						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						CGGACTGCACGATCACCTGAA	0.582													6	56					0	0	0.00198382	0	0
SCAPER	49855	broad.mit.edu	37	15	77059417	77059417	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:77059417C>A	uc002bby.2	-	10	1320	c.1261G>T	c.(1261-1263)GTC>TTC	p.V421F	SCAPER_uc002bbx.2_Missense_Mutation_p.V175F|SCAPER_uc002bbz.1_Missense_Mutation_p.V292F|SCAPER_uc002bca.1_Missense_Mutation_p.V286F|SCAPER_uc002bcb.1_Missense_Mutation_p.V427F|SCAPER_uc002bcc.1_Missense_Mutation_p.V421F	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	420	Glu-rich.					endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						TTAGCAAGGACTTCTGCCATG	0.333													11	16					3.07112e-06	8.57701e-06	0.000978159	1	0
SCAPER	49855	broad.mit.edu	37	15	77064234	77064234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:77064234C>T	uc002bby.2	-	9	1156	c.1097G>A	c.(1096-1098)CGA>CAA	p.R366Q	SCAPER_uc002bbx.2_Missense_Mutation_p.R120Q|SCAPER_uc002bbz.1_Missense_Mutation_p.R231Q|SCAPER_uc002bca.1_Missense_Mutation_p.R231Q|SCAPER_uc002bcb.1_Missense_Mutation_p.R366Q|SCAPER_uc002bcc.1_Missense_Mutation_p.R366Q	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	365						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						TTCAGAAGTTCGAACATAATT	0.353													40	86					0	0	0.00195071	0	0
RASGRF1	5923	broad.mit.edu	37	15	79339138	79339138	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:79339138G>A	uc002beq.2	-	5	1203	c.828C>T	c.(826-828)TCC>TCT	p.S276S	RASGRF1_uc002bep.2_Silent_p.S276S|RASGRF1_uc010blm.1_Silent_p.S198S|RASGRF1_uc002ber.3_Silent_p.S276S	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	276	DH.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GAGGCTTCTTGGAGCTGGCGG	0.577													30	55					0	0	0.00283554	0	0
KIAA1024	23251	broad.mit.edu	37	15	79748522	79748522	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:79748522G>C	uc002bew.1	+	2	108	c.33G>C	c.(31-33)TTG>TTC	p.L11F	KIAA1024_uc010unk.1_Missense_Mutation_p.L11F	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	11						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						CCCTCTTCTTGGTGAAGATCT	0.468													16	21					0	0	0.000566183	0	0
KIAA1024	23251	broad.mit.edu	37	15	79749389	79749389	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:79749389C>T	uc002bew.1	+	2	975	c.900C>T	c.(898-900)TTC>TTT	p.F300F	KIAA1024_uc010unk.1_Silent_p.F300F	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	300						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						CACCCTTCTTCAACCACAGCT	0.522													19	77					0	0	0.00229938	0	0
ARNT2	9915	broad.mit.edu	37	15	80743333	80743333	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:80743333C>T	uc002bfr.2	+	2	310	c.144C>T	c.(142-144)TCC>TCT	p.S48S	ARNT2_uc002bfq.2_Silent_p.S48S|ARNT2_uc010unm.1_Silent_p.S37S|ARNT2_uc002bfs.2_Silent_p.S37S	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	48					central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			AGCGGCGTTCCGGGTAAGCGA	0.547													11	44					0	0	0.00136819	0	0
KIAA1199	57214	broad.mit.edu	37	15	81172181	81172181	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:81172181C>T	uc002bfw.1	+	4	626	c.366C>T	c.(364-366)ATC>ATT	p.I122I	KIAA1199_uc010unn.1_Silent_p.I122I	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	122	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						ATTTCACCATCATTTTGTATG	0.522													13	25					0	0	0.00185496	0	0
IL16	3603	broad.mit.edu	37	15	81592017	81592017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:81592017C>T	uc002bgh.3	+	14	2726	c.2350C>T	c.(2350-2352)CCT>TCT	p.P784S	IL16_uc010blq.1_Missense_Mutation_p.P738S|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.P826S|IL16_uc002bgg.2_Missense_Mutation_p.P784S|IL16_uc002bgi.1_Missense_Mutation_p.P174S|IL16_uc002bgj.2_Missense_Mutation_p.P278S|IL16_uc002bgk.2_Missense_Mutation_p.P83S|IL16_uc002bgl.1_Missense_Mutation_p.P83S|IL16_uc010unq.1_Missense_Mutation_p.P83S	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	784					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						GAAAGGTCCTCCTGTGGCTCC	0.567													15	41					0	0	0.000566183	0	0
TMC3	342125	broad.mit.edu	37	15	81627096	81627096	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:81627096C>T	uc002bgo.1	-	21	2424	c.2424G>A	c.(2422-2424)GGG>GGA	p.G808G	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	808	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						ATTTGGGGACCCCAGGGAGAG	0.567													4	16					0	0	0.00024832	0	0
EFTUD1	79631	broad.mit.edu	37	15	82532857	82532858	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:82532857_82532858GG>AA	uc002bgt.1	-	6	586_587	c.417_418CC>TT	c.(415-420)ATCCGT>ATTTGT	p.R140C	EFTUD1_uc002bgu.1_Missense_Mutation_p.R89C	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	140					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						AAAACCGGACGGATGTTTTCAA	0.366													7	41					0	0	6.4e-05	0	0
FSD2	123722	broad.mit.edu	37	15	83447561	83447561	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:83447561G>A	uc002bjd.2	-	6	1235	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	FSD2_uc010uol.1_Silent_p.F356F|FSD2_uc010uom.1_Silent_p.F356F	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	356										central_nervous_system(1)	1						CCACATCAGAGAAATCCAAGG	0.453													12	9					0	0	0.000978159	0	0
FSD2	123722	broad.mit.edu	37	15	83456026	83456026	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:83456026C>T	uc002bjd.2	-	2	284	c.117G>A	c.(115-117)GAG>GAA	p.E39E	FSD2_uc010uol.1_Silent_p.E39E|FSD2_uc010uom.1_Silent_p.E39E	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	39										central_nervous_system(1)	1						TCCTAGTGTTCTCTTCTGGAA	0.498													15	106					0	0	0.000566183	0	0
HOMER2	9455	broad.mit.edu	37	15	83527798	83527798	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:83527798C>T	uc002bjg.2	-	5	696	c.510G>A	c.(508-510)AAG>AAA	p.K170K	HOMER2_uc002bjh.2_Silent_p.K159K|HOMER2_uc002bjj.2_Silent_p.K159K|HOMER2_uc002bji.2_Silent_p.K170K	NM_199330	NP_955362	Q9NSB8	HOME2_HUMAN	homer 2 isoform 2	170	Potential.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane					0						TCAAGGCAATCTTCAGCTTGT	0.502													17	57					0	0	0.00121646	0	0
SH3GL3	6457	broad.mit.edu	37	15	84286846	84286846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:84286846C>T	uc002bjw.2	+	9	1046	c.851C>T	c.(850-852)CCC>CTC	p.P284L	SH3GL3_uc002bjx.2_Missense_Mutation_p.P215L|SH3GL3_uc002bju.2_Missense_Mutation_p.P292L|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	284					central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						TCTAACATTCCCATGGACCAG	0.413													7	51					0	0	0.00307968	0	0
ACAN	176	broad.mit.edu	37	15	89398695	89398695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:89398695G>A	uc010upo.1	+	12	3253	c.2879G>A	c.(2878-2880)GGA>GAA	p.G960E	ACAN_uc010upp.1_Missense_Mutation_p.G960E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	960					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CTTCCTTCTGGAGAAGTTCTA	0.567													11	24					0	0	0.000978159	0	0
ACAN	176	broad.mit.edu	37	15	89400086	89400086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:89400086C>T	uc010upo.1	+	12	4644	c.4270C>T	c.(4270-4272)CCT>TCT	p.P1424S	ACAN_uc010upp.1_Missense_Mutation_p.P1424S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1424					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GACTACTGCCCCTGGAGTAGA	0.532													18	66					0	0	0.00074312	0	0
ANPEP	290	broad.mit.edu	37	15	90335429	90335429	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:90335429T>G	uc002bop.3	-	18	2782	c.2490A>C	c.(2488-2490)GCA>GCC	p.A830A		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	830	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	AGGCCAGGGCTGCCCGGAGCT	0.632													9	28					0	0	0.000673444	0	0
ANPEP	290	broad.mit.edu	37	15	90335554	90335554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:90335554G>A	uc002bop.3	-	18	2657	c.2365C>T	c.(2365-2367)CAC>TAC	p.H789Y		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	789	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	AGGTTGGGGTGGATCCTGGTG	0.642													15	35					0	0	0.00316338	0	0
IQGAP1	8826	broad.mit.edu	37	15	90992859	90992859	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:90992859C>T	uc002bpl.1	+	11	1247	c.1146C>T	c.(1144-1146)GCC>GCT	p.A382A		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	382					energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			ACAGTGCTGCCCAGCAATATC	0.453													4	12					0	0	0.000602214	0	0
IQGAP1	8826	broad.mit.edu	37	15	90999484	90999484	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:90999484C>T	uc002bpl.1	+	15	1814	c.1713C>T	c.(1711-1713)GTC>GTT	p.V571V		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	571					energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			TTGAGGGAGTCCTTGCAGAAG	0.478													7	11					0	0	0.00198382	0	0
FURIN	5045	broad.mit.edu	37	15	91419086	91419086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:91419086C>T	uc002bpu.1	+	2	332	c.116C>T	c.(115-117)CCT>CTT	p.P39L		NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	39					cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GTGCGCATCCCTGGAGGCCCA	0.622													19	72					0	0	0.00229938	0	0
VPS33B	26276	broad.mit.edu	37	15	91543792	91543792	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:91543792C>G	uc002bqp.1	-	20	1863	c.1509G>C	c.(1507-1509)CTG>CTC	p.L503L	VPS33B_uc002bqq.1_Silent_p.L412L|VPS33B_uc010uqu.1_Silent_p.L476L	NM_018668	NP_061138	Q9H267	VP33B_HUMAN	vacuolar protein sorting 33B (yeast homolog))	503					cellular membrane fusion|lysosome localization|melanosome localization|platelet alpha granule organization|protein transport|vesicle docking involved in exocytosis	late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm|platelet alpha granule	protein binding			ovary(2)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					GGGGCACTTTCAGATCATACT	0.502													30	143					0	0	0.00327116	0	0
SV2B	9899	broad.mit.edu	37	15	91809816	91809816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:91809816C>T	uc002bqv.2	+	6	1404	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F	SV2B_uc002bqt.2_Missense_Mutation_p.S338F|SV2B_uc010uqv.1_Missense_Mutation_p.S187F|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	338	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TTTCAGGTTTCCAACATCAAA	0.368													38	132					0	0	0.00148497	0	0
SV2B	9899	broad.mit.edu	37	15	91811791	91811791	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:91811791G>A	uc002bqv.2	+	8	1720	c.1329G>A	c.(1327-1329)ACG>ACA	p.T443T	SV2B_uc002bqt.2_Silent_p.T443T|SV2B_uc010uqv.1_Silent_p.T292T|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	443	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TCAACTTCACGATGGAAAATC	0.438													69	246					0	0	0.00361006	0	0
SV2B	9899	broad.mit.edu	37	15	91811827	91811827	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:91811827G>A	uc002bqv.2	+	8	1756	c.1365G>A	c.(1363-1365)GTG>GTA	p.V455V	SV2B_uc002bqt.2_Silent_p.V455V|SV2B_uc010uqv.1_Silent_p.V304V|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	455	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GGAAACTTGTGAATGATAAGT	0.453													37	155					0	0	0.000953801	0	0
MCTP2	55784	broad.mit.edu	37	15	94983425	94983425	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:94983425G>A	uc002btj.2	+	17	2171	c.2106G>A	c.(2104-2106)TGG>TGA	p.W702*	MCTP2_uc010boj.2_Nonsense_Mutation_p.W431*|MCTP2_uc010bok.2_Intron|MCTP2_uc002btl.2_Nonsense_Mutation_p.W290*	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	702	Helical; (Potential).				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding	p.W702*(1)		ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TCACTGTCTGGAATTTTGAAC	0.393													23	92					0	0	0.000720815	0	0
TTC23	64927	broad.mit.edu	37	15	99759151	99759151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:99759151G>A	uc002bur.2	-	6	938	c.407C>T	c.(406-408)TCC>TTC	p.S136F	TTC23_uc002bus.2_Missense_Mutation_p.S136F|TTC23_uc002but.2_Missense_Mutation_p.S136F|TTC23_uc002buu.2_Missense_Mutation_p.S136F|TTC23_uc002buv.2_Missense_Mutation_p.S136F|TTC23_uc002bux.2_Missense_Mutation_p.S136F|TTC23_uc002buw.2_Missense_Mutation_p.S136F|TTC23_uc010boq.2_RNA|TTC23_uc002buy.2_Missense_Mutation_p.S136F|TTC23_uc010bor.2_Missense_Mutation_p.S136F|TTC23_uc002buz.2_Missense_Mutation_p.S136F	NM_022905	NP_075056	Q5W5X9	TTC23_HUMAN	tetratricopeptide repeat domain 23	136							binding				0	all_cancers(4;1.49e-13)|Lung NSC(78;0.000545)|all_lung(78;0.00121)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		all cancers(5;8.11e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00215)			AAGCTCAATGGAAAACTTGAA	0.398													17	93					0	0	0.00074312	0	0
OR4F6	390648	broad.mit.edu	37	15	102346365	102346365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr15:102346365C>T	uc010utr.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TTAGTCATTTCCTGGATTATA	0.403													62	87					0	0	0.00361006	0	0
RAB40C	57799	broad.mit.edu	37	16	677464	677464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:677464G>A	uc002chr.2	+	6	804	c.688G>A	c.(688-690)GGC>AGC	p.G230S	RAB40C_uc002chq.2_Missense_Mutation_p.G211S|WFIKKN1_uc002chs.1_5'Flank	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	230					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				GATGGCCAACGGCATGAACGC	0.647													12	60					0	0	0.00136819	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270722	1270722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:1270722C>T	uc002cks.2	+	35	7038	c.6790C>T	c.(6790-6792)CCC>TCC	p.P2264S	CACNA1H_uc002ckt.2_Missense_Mutation_p.P2258S|CACNA1H_uc002cku.2_Missense_Mutation_p.P959S|CACNA1H_uc010brj.2_Missense_Mutation_p.P975S|CACNA1H_uc002ckv.2_Missense_Mutation_p.P953S	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2264	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CCTGACCGTCCCCAGCTTTGC	0.682													3	10					0	0	6.4e-05	0	0
IFT140	9742	broad.mit.edu	37	16	1574818	1574818	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:1574818G>A	uc002cmb.2	-	23	3326	c.2964C>T	c.(2962-2964)GTC>GTT	p.V988V	IFT140_uc002clz.2_Silent_p.V601V	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	988	TPR 4.									ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				AGTGGATGCGGACCAGGGAGA	0.672													7	28					0	0	0.00136819	0	0
IFT140	9742	broad.mit.edu	37	16	1633354	1633354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:1633354C>T	uc002cmb.2	-	12	1755	c.1393G>A	c.(1393-1395)GCG>ACG	p.A465T	IFT140_uc002clz.2_Missense_Mutation_p.A116T	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	465										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TCGAAGATCGCCACCTGCCTT	0.567													4	23					0	0	0.000602214	0	0
CRAMP1L	57585	broad.mit.edu	37	16	1703084	1703084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:1703084C>T	uc010uvh.1	+	7	964	c.964C>T	c.(964-966)CCT>TCT	p.P322S	CRAMP1L_uc002cmf.2_RNA	NM_020825	NP_065876	Q96RY5	CRML_HUMAN	Crm, cramped-like	322						nucleus	DNA binding				0						TCTGAAAGTCCCTATAGAGCT	0.572													5	13					0	0	0.00116845	0	0
NUBP2	10101	broad.mit.edu	37	16	1838626	1838626	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:1838626A>G	uc002cmw.3	+	7	816	c.727A>G	c.(727-729)ATC>GTC	p.I243V	NUBP2_uc002cmx.3_Missense_Mutation_p.I102V|NUBP2_uc010brx.2_Missense_Mutation_p.I183V	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	243						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						CCACGACTTCATCCAGGAGTT	0.677													5	10					0	0	0.000602214	0	0
ABCA3	21	broad.mit.edu	37	16	2354107	2354107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:2354107C>T	uc002cpy.1	-	12	2042	c.1330G>A	c.(1330-1332)GAC>AAC	p.D444N	ABCA3_uc010bsk.1_Missense_Mutation_p.D386N|ABCA3_uc010bsl.1_Missense_Mutation_p.D444N	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	444					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				AAGTCGTCGTCCACGTTGACG	0.632													21	45					0	0	0.000720815	0	0
PDPK1	5170	broad.mit.edu	37	16	2647217	2647217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:2647217C>T	uc002cqs.2	+	13	1639	c.1495C>T	c.(1495-1497)CCT>TCT	p.P499S	PDPK1_uc002cqt.2_Missense_Mutation_p.P372S|PDPK1_uc010bsn.2_Intron|PDPK1_uc002cqu.2_Missense_Mutation_p.P472S	NM_002613	NP_002604	O15530	PDPK1_HUMAN	3-phosphoinositide dependent protein kinase-1	499	PH.				actin cytoskeleton organization|activation of protein kinase B activity|insulin receptor signaling pathway|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|peptidyl-threonine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|synaptic transmission|T cell costimulation|T cell receptor signaling pathway	cytosol|nucleoplasm|plasma membrane	3-phosphoinositide-dependent protein kinase activity|ATP binding			central_nervous_system(2)|ovary(1)	3		Ovarian(90;0.17)			Celecoxib(DB00482)	AGGTGAAATTCCTTGGTCACA	0.448													27	65					0	0	0.001512	0	0
NLRC3	197358	broad.mit.edu	37	16	3611771	3611771	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:3611771G>A	uc010btn.2	-	6	2358	c.1947C>T	c.(1945-1947)TTC>TTT	p.F649F		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	649	LRR 2.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CGGGGTCCTGGAACTGGTTGG	0.667													8	25					0	0	0.000274275	0	0
TFAP4	7023	broad.mit.edu	37	16	4311888	4311888	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:4311888G>A	uc010uxg.1	-	4	671	c.417C>T	c.(415-417)TCC>TCT	p.S139S		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	139					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						AGATGTCCGGGGAGCCTATGC	0.667											OREG0023575	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	9					0	0	0.00116845	0	0
UBN1	29855	broad.mit.edu	37	16	4927102	4927102	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:4927102C>T	uc002cyb.2	+	16	3594	c.3255C>T	c.(3253-3255)GGC>GGT	p.G1085G	UBN1_uc010uxw.1_Silent_p.G1085G|UBN1_uc002cyc.2_Silent_p.G1085G	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	1085					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						TCCACCATGGCCTTGGCCACA	0.582													17	70					0	0	0.000958276	0	0
PPL	5493	broad.mit.edu	37	16	4935871	4935871	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:4935871G>A	uc002cyd.1	-	22	2875	c.2785C>T	c.(2785-2787)CAG>TAG	p.Q929*		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	929	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						ACCGATTCCTGAGGCCCCTGA	0.607													10	63					0	0	0.000673444	0	0
A2BP1	54715	broad.mit.edu	37	16	7568348	7568348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:7568348G>A	uc002cys.2	+	5	1215	c.227G>A	c.(226-228)AGC>AAC	p.S76N	A2BP1_uc010buf.1_Missense_Mutation_p.S76N|A2BP1_uc002cyr.1_Missense_Mutation_p.S76N|A2BP1_uc002cyt.2_Missense_Mutation_p.S76N|A2BP1_uc010uxz.1_Missense_Mutation_p.S119N|A2BP1_uc010uya.1_Missense_Mutation_p.S112N|A2BP1_uc002cyv.1_Missense_Mutation_p.S76N|A2BP1_uc010uyb.1_Missense_Mutation_p.S76N|A2BP1_uc002cyw.2_Missense_Mutation_p.S96N|A2BP1_uc002cyy.2_Missense_Mutation_p.S96N|A2BP1_uc002cyx.2_Missense_Mutation_p.S96N|A2BP1_uc010uyc.1_Missense_Mutation_p.S96N	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	76					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		TCCGAGCAGAGCCCGGCGGAC	0.667													8	62					0	0	0.000274275	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858202	9858202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:9858202G>A	uc002czo.3	-	13	3747	c.3199C>T	c.(3199-3201)CGG>TGG	p.R1067W	GRIN2A_uc010uym.1_Missense_Mutation_p.R1067W|GRIN2A_uc010uyn.1_Missense_Mutation_p.R910W|GRIN2A_uc002czr.3_Missense_Mutation_p.R1067W	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1067	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CACGTGGCCCGATTTGACGTT	0.498													21	43					0	0	0.00395357	0	0
GRIN2A	2903	broad.mit.edu	37	16	9892287	9892287	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:9892287A>T	uc002czo.3	-	11	2751	c.2203T>A	c.(2203-2205)TTG>ATG	p.L735M	GRIN2A_uc010uym.1_Missense_Mutation_p.L735M|GRIN2A_uc010uyn.1_Missense_Mutation_p.L578M|GRIN2A_uc002czr.3_Missense_Mutation_p.L735M	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	735	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTGTAATTCAAGACTGCGGCA	0.552													16	15					0	0	0.000566183	0	0
RUNDC2A	84127	broad.mit.edu	37	16	12136782	12136782	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:12136782G>A	uc002dbw.1	+	5	338	c.276G>A	c.(274-276)GAG>GAA	p.E92E		NM_032167	NP_115543	Q9HA26	RUN2A_HUMAN	RUN domain containing 2A	92	RUN.									ovary(1)	1						ACGTGAAGGAGGTCCTCAACA	0.647			T	CIITA	PMBL|Hodgkin Lymphona|								4	16					0	0	0.00024832	0	0
KIAA0430	9665	broad.mit.edu	37	16	15706616	15706616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:15706616G>A	uc002ddr.2	-	17	3465	c.3272C>T	c.(3271-3273)TCG>TTG	p.S1091L	KIAA0430_uc002ddq.2_Missense_Mutation_p.S925L|KIAA0430_uc010uzv.1_Missense_Mutation_p.S1087L|KIAA0430_uc010uzw.1_Missense_Mutation_p.S1090L	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1090						peroxisome	nucleotide binding|RNA binding				0						AGGACTCTTCGAACGCAGAAG	0.473													24	101					0	0	0.000720815	0	0
MYH11	4629	broad.mit.edu	37	16	15841936	15841937	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:15841936_15841937GG>AA	uc002ddy.2	-	17	2254_2255	c.2147_2148CC>TT	c.(2146-2148)CCC>CTT	p.P716L	MYH11_uc002ddv.2_Missense_Mutation_p.P723L|MYH11_uc002ddw.2_Missense_Mutation_p.P716L|MYH11_uc002ddx.2_Missense_Mutation_p.P723L|MYH11_uc010bvg.2_Missense_Mutation_p.P548L	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	716	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CGATCCGGTTGGGGAAGCCCTG	0.634			T	CBFB	AML								8	23					0	0	6.4e-05	0	0
MYH11	4629	broad.mit.edu	37	16	15851813	15851813	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:15851813C>T	uc002ddy.2	-	13	1553	c.1446G>A	c.(1444-1446)AAG>AAA	p.K482K	MYH11_uc002ddv.2_Silent_p.K489K|MYH11_uc002ddw.2_Silent_p.K482K|MYH11_uc002ddx.2_Silent_p.K489K|MYH11_uc010bvg.2_Silent_p.K314K|MYH11_uc002dea.1_Silent_p.K188K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	482	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCTGCTGCAGCTTCTCGTTGG	0.562			T	CBFB	AML								9	49					0	0	0.000978159	0	0
XYLT1	64131	broad.mit.edu	37	16	17221635	17221635	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:17221635G>A	uc002dfa.2	-	10	2196	c.2111C>T	c.(2110-2112)GCT>GTT	p.A704V		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	704	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CAGATTGGTAGCATGATGCTT	0.522													22	62					0	0	0.000720815	0	0
SMG1	23049	broad.mit.edu	37	16	18851080	18851080	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:18851080G>A	uc002dfm.2	-	42	7248	c.6885C>T	c.(6883-6885)CTC>CTT	p.L2295L	SMG1_uc010bwb.2_Silent_p.L2155L|SMG1_uc010bwa.2_Silent_p.L1026L|SMG1_uc002dfo.3_Silent_p.L593L	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2295	PI3K/PI4K.				DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						CTTTGGCAAGGAGATTCGGGG	0.468													15	58					0	0	0.000566183	0	0
TMC7	79905	broad.mit.edu	37	16	19032952	19032952	+	Silent	SNP	G	A	A	rs145788880		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:19032952G>A	uc002dfq.2	+	4	592	c.462G>A	c.(460-462)GGG>GGA	p.G154G	TMC7_uc010vao.1_Silent_p.G154G|TMC7_uc002dfp.2_Silent_p.G154G|TMC7_uc010vap.1_Silent_p.G44G	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	154	Extracellular (Potential).					integral to membrane		p.G154G(1)		skin(2)|ovary(1)	3						TTTTTCCAGGGAAATTTGGCA	0.418													16	66					0	0	0.00074312	0	0
TMC5	79838	broad.mit.edu	37	16	19475205	19475205	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:19475205C>T	uc002dgc.3	+	8	2093	c.1344C>T	c.(1342-1344)TCC>TCT	p.S448S	TMC5_uc010vaq.1_Silent_p.S448S|TMC5_uc002dgb.3_Silent_p.S448S|TMC5_uc010var.1_Silent_p.S448S|TMC5_uc002dgd.1_Silent_p.S202S|TMC5_uc002dge.3_Silent_p.S202S|TMC5_uc002dgf.3_Silent_p.S131S|TMC5_uc002dgg.3_Silent_p.S89S	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	448	Extracellular (Potential).					integral to membrane				skin(1)	1						GCGTCCTCTCCTATTTCAACT	0.443													7	38					0	0	0.00198382	0	0
TMC5	79838	broad.mit.edu	37	16	19477445	19477445	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:19477445C>T	uc002dgc.3	+	9	2276	c.1527C>T	c.(1525-1527)ACC>ACT	p.T509T	TMC5_uc010vaq.1_Silent_p.T509T|TMC5_uc002dgb.3_Silent_p.T509T|TMC5_uc010var.1_Silent_p.T509T|TMC5_uc002dgd.1_Silent_p.T263T|TMC5_uc002dge.3_Silent_p.T263T|TMC5_uc002dgf.3_Silent_p.T192T|TMC5_uc002dgg.3_Silent_p.T150T	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	509	Extracellular (Potential).					integral to membrane				skin(1)	1						GCTTTTACACCAATTCCACCA	0.458													4	21					0	0	0.00024832	0	0
TMC5	79838	broad.mit.edu	37	16	19501851	19501851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:19501851G>A	uc002dgc.3	+	18	3457	c.2708G>A	c.(2707-2709)GGA>GAA	p.G903E	TMC5_uc010vaq.1_Missense_Mutation_p.G851E|TMC5_uc002dgb.3_Intron|TMC5_uc010var.1_Missense_Mutation_p.G903E|TMC5_uc002dgd.1_Missense_Mutation_p.G657E|TMC5_uc002dge.3_Missense_Mutation_p.G657E|TMC5_uc002dgf.3_Missense_Mutation_p.G586E|TMC5_uc002dgg.3_Missense_Mutation_p.G544E	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	903	Helical; (Potential).					integral to membrane				skin(1)	1						AACCTCATTGGAAGTGTGCAC	0.527													31	106					0	0	0.00327116	0	0
C16orf62	57020	broad.mit.edu	37	16	19641094	19641094	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:19641094C>A	uc002dgn.1	+	18	1518	c.1506C>A	c.(1504-1506)TAC>TAA	p.Y502*	C16orf62_uc002dgo.1_Nonsense_Mutation_p.Y435*|C16orf62_uc002dgp.1_Nonsense_Mutation_p.Y251*	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	502						integral to membrane				ovary(1)	1						TGTAGGACTACATTAATTGTG	0.378													17	43					0.000958276	0.0026664	0.000958276	1	0
GPR139	124274	broad.mit.edu	37	16	20043082	20043082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:20043082C>T	uc002dgu.1	-	2	1199	c.1037G>A	c.(1036-1038)GGA>GAA	p.G346E	GPR139_uc010vaw.1_Missense_Mutation_p.G253E	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	346	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						TATAGGTTTTCCATTTTTGTC	0.458													10	58					0	0	0.00136819	0	0
GPR139	124274	broad.mit.edu	37	16	20043949	20043949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:20043949C>T	uc002dgu.1	-	2	332	c.170G>A	c.(169-171)AGA>AAA	p.R57K	GPR139_uc010vaw.1_5'UTR	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	57	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CTTCTGTCTTCTTGCCACCAG	0.463													10	39					0	0	0.00136819	0	0
PDILT	204474	broad.mit.edu	37	16	20380952	20380952	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:20380952G>A	uc002dhc.1	-	8	1201	c.978C>T	c.(976-978)TTC>TTT	p.F326F		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	326					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						CTGTGACCCGGAAGTACTTGA	0.468													14	61					0	0	0.000422831	0	0
ACSM2A	123876	broad.mit.edu	37	16	20486756	20486756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:20486756C>T	uc010bwe.2	+	8	1206	c.967C>T	c.(967-969)CTT>TTT	p.L323F	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.L244F|ACSM2A_uc002dhf.3_Missense_Mutation_p.L323F|ACSM2A_uc002dhg.3_Missense_Mutation_p.L323F|ACSM2A_uc010vay.1_Missense_Mutation_p.L244F|ACSM2A_uc002dhh.3_5'Flank	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	323					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						ACAGCAGGATCTTTCCAGGTG	0.498													9	34					0	0	0.000673444	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20871502	20871502	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:20871502G>A	uc002dhz.2	-	3	762	c.621C>T	c.(619-621)GCC>GCT	p.A207A	ERI2_uc002dht.3_Intron	NM_173475	NP_775746	Q8IWE4	DCNL3_HUMAN	DCN1, defective in cullin neddylation 1, domain	207	DCUN1.				negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of apoptosis|response to gamma radiation|response to UV-C	perinuclear region of cytoplasm				ovary(2)	2				GBM - Glioblastoma multiforme(48;0.249)		GTTTCCACAGGGCAATGGCTA	0.498													16	73					0	0	0.00074312	0	0
DNAH3	55567	broad.mit.edu	37	16	20975073	20975073	+	Missense_Mutation	SNP	G	A	A	rs150659278		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:20975073G>A	uc010vbe.1	-	53	10133	c.10133C>T	c.(10132-10134)ACC>ATC	p.T3378I	DNAH3_uc010vbd.1_Missense_Mutation_p.T813I	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3378					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GATGCCGATGGTCAGGAGGAG	0.493													17	50					0	0	0.00074312	0	0
DNAH3	55567	broad.mit.edu	37	16	20975406	20975406	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:20975406T>C	uc010vbe.1	-	53	9800	c.9800A>G	c.(9799-9801)AAA>AGA	p.K3267R	DNAH3_uc010vbd.1_Missense_Mutation_p.K702R	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3267	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGATAGCACTTTGGAGGAGGA	0.468													32	108					0	0	0.00283554	0	0
DNAH3	55567	broad.mit.edu	37	16	21078707	21078707	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:21078707G>A	uc010vbe.1	-	24	3415	c.3415C>T	c.(3415-3417)CAG>TAG	p.Q1139*		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1139	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATCCGTGGCTGGTCGGCTGCC	0.453													14	73					0	0	0.00316338	0	0
ZP2	7783	broad.mit.edu	37	16	21215354	21215354	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:21215354C>T	uc002dii.2	-	9	969	c.969G>A	c.(967-969)ACG>ACA	p.T323T	ZP2_uc010bwn.1_Silent_p.T362T|ZP2_uc010bwo.2_Silent_p.T362T	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	323	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		AACATACTTTCGTTTTGAGCA	0.433													12	36					0	0	0.00244969	0	0
USP31	57478	broad.mit.edu	37	16	23080496	23080496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:23080496G>A	uc002dll.2	-	16	2930	c.2930C>T	c.(2929-2931)CCC>CTC	p.P977L	USP31_uc002dlk.2_Missense_Mutation_p.P249L|USP31_uc010vca.1_Missense_Mutation_p.P280L|USP31_uc010bxm.2_Missense_Mutation_p.P265L	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	977	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		AGAGAGCGGGGGCAGGCGGTC	0.522													14	59					0	0	0.000422831	0	0
SCNN1G	6340	broad.mit.edu	37	16	23208639	23208639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:23208639C>T	uc002dlm.1	+	6	1107	c.968C>T	c.(967-969)TCC>TTC	p.S323F		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	323	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TTCCTCGTGTCCTCCACTGGA	0.478													14	14					0	0	0.00185496	0	0
ERN2	10595	broad.mit.edu	37	16	23718080	23718080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:23718080C>T	uc002dma.3	-	6	795	c.626G>A	c.(625-627)CGA>CAA	p.R209Q	ERN2_uc010bxp.2_Missense_Mutation_p.R209Q|ERN2_uc010bxq.1_Missense_Mutation_p.R17Q	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	161	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		CTCACGTGTTCGGCCAATGTA	0.587													10	34					0	0	0.00244969	0	0
RBBP6	5930	broad.mit.edu	37	16	24582974	24582974	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:24582974C>T	uc002dmh.2	+	18	5627	c.4587C>T	c.(4585-4587)TCC>TCT	p.S1529S	RBBP6_uc002dmi.2_Silent_p.S1495S|RBBP6_uc010bxr.2_Silent_p.S689S|RBBP6_uc002dmk.2_Silent_p.S1362S	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1529	Interaction with p53 (By similarity).				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		CAGGAGATTCCAAAAAAAGTA	0.378													14	32					0	0	0.00185496	0	0
TNRC6A	27327	broad.mit.edu	37	16	24801572	24801572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:24801572C>T	uc002dmm.2	+	6	1723	c.1609C>T	c.(1609-1611)CCT>TCT	p.P537S	TNRC6A_uc010bxs.2_Missense_Mutation_p.P284S|TNRC6A_uc010vcc.1_Missense_Mutation_p.P284S|TNRC6A_uc002dmn.2_Missense_Mutation_p.P284S|TNRC6A_uc002dmo.2_Missense_Mutation_p.P284S	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	537	Sufficient for interaction with EIF2C2.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		ATGTTCAGGCCCTAATGGCCA	0.448													20	83					0	0	0.00188189	0	0
TNRC6A	27327	broad.mit.edu	37	16	24829927	24829927	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:24829927C>T	uc002dmm.2	+	21	5100	c.4986C>T	c.(4984-4986)TCC>TCT	p.S1662S	TNRC6A_uc010bxs.2_Silent_p.S1409S|TNRC6A_uc002dmn.2_Silent_p.S1360S|TNRC6A_uc002dmo.2_Silent_p.S1301S	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	1662					negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		CATCCTCATCCTTGAACACCA	0.522													5	12					0	0	0.00116845	0	0
SLC5A11	115584	broad.mit.edu	37	16	24920276	24920276	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:24920276G>A	uc002dmu.2	+	14	1741	c.1509G>A	c.(1507-1509)CAG>CAA	p.Q503Q	SLC5A11_uc002dms.2_Silent_p.Q439Q|SLC5A11_uc010vcd.1_Silent_p.Q468Q|SLC5A11_uc002dmt.2_Silent_p.Q347Q|SLC5A11_uc010vce.1_Silent_p.Q433Q|SLC5A11_uc010bxt.2_Silent_p.Q439Q|SLC5A11_uc002dmv.2_Silent_p.Q126Q	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	503	Extracellular (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		TTTACGTGCAGCCTCGATGCG	0.557													9	28					0	0	0.000274275	0	0
GTF3C1	2975	broad.mit.edu	37	16	27504020	27504020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:27504020G>A	uc002dov.1	-	18	2931	c.2891C>T	c.(2890-2892)TCG>TTG	p.S964L	GTF3C1_uc002dou.2_Missense_Mutation_p.S964L	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	964						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CTCCACCACCGAAAAAATGTA	0.562													18	57					0	0	0.00121646	0	0
GTF3C1	2975	broad.mit.edu	37	16	27523104	27523104	+	Silent	SNP	G	A	A	rs142782053	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:27523104G>A	uc002dov.1	-	7	1132	c.1092C>T	c.(1090-1092)TTC>TTT	p.F364F	GTF3C1_uc002dou.2_Silent_p.F364F	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	364						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TATCCCGCTCGAACACAATGT	0.507													13	38					0	0	0.00244969	0	0
SBK1	388228	broad.mit.edu	37	16	28330371	28330371	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:28330371C>T	uc002dpd.2	+	3	1071	c.282C>T	c.(280-282)TTC>TTT	p.F94F		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	94	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						TGAAGAACTTCCTACGGGAGG	0.522													19	58					0	0	0.00229938	0	0
SULT1A1	6817	broad.mit.edu	37	16	28618084	28618084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:28618084C>T	uc002dqi.2	-	5	1065	c.592G>A	c.(592-594)GAG>AAG	p.E198K	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.E198K|SULT1A1_uc002dqk.2_Missense_Mutation_p.E198K|SULT1A1_uc002dql.2_Missense_Mutation_p.E198K|SULT1A1_uc002dqm.2_Missense_Mutation_p.E120K|SULT1A1_uc002dqn.2_Missense_Mutation_p.E289K|SULT1A1_uc002dqo.2_Missense_Mutation_p.E198K|SULT1A1_uc002dqp.2_Missense_Mutation_p.E198K	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	198	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						GGTCTCACCTCCTTCATGTCT	0.632													8	29					0	0	0.000274275	0	0
TUFM	7284	broad.mit.edu	37	16	28855778	28855778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:28855778G>A	uc002drh.2	-	6	918	c.779C>T	c.(778-780)CCT>CTT	p.P260L	uc010vct.1_Intron|SH2B1_uc002dri.2_5'Flank	NM_003321	NP_003312	P49411	EFTU_HUMAN	Tu translation elongation factor, mitochondrial	257						mitochondrial nucleoid	GTP binding|GTPase activity|protein binding|translation elongation factor activity			ovary(1)	1						CAGCAGGAAAGGCTTCTCCAG	0.602													6	29					0	0	0.00116845	0	0
SH2B1	25970	broad.mit.edu	37	16	28883917	28883917	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:28883917C>T	uc002dri.2	+	10	2227	c.1788C>T	c.(1786-1788)TCC>TCT	p.S596S	uc010vct.1_Intron|SH2B1_uc010vdc.1_Silent_p.S286S|SH2B1_uc002drj.2_Silent_p.S596S|SH2B1_uc002drk.2_Silent_p.S596S|SH2B1_uc002drl.2_Silent_p.S596S|SH2B1_uc010vdd.1_Silent_p.S260S|SH2B1_uc010vde.1_Silent_p.S596S|SH2B1_uc002drm.2_Silent_p.S596S	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	596	SH2.				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						GGTTCCAGTCCATTTTCGATA	0.602													15	37					0	0	0.000958276	0	0
TAOK2	9344	broad.mit.edu	37	16	29994207	29994207	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:29994207C>T	uc002dva.1	+	11	1767	c.984C>T	c.(982-984)GCC>GCT	p.A328A	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Silent_p.A328A|TAOK2_uc002dvc.1_Silent_p.A328A|TAOK2_uc010bzm.1_Silent_p.A328A|TAOK2_uc002dvd.1_Silent_p.A155A	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	328					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GTGCCGAGGCCCCAGAGGAGG	0.612													12	54					0	0	0.00136819	0	0
TAOK2	9344	broad.mit.edu	37	16	29997712	29997712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:29997712C>T	uc002dva.1	+	16	2902	c.2119C>T	c.(2119-2121)CGC>TGC	p.R707C	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Missense_Mutation_p.R707C|TAOK2_uc002dvc.1_Missense_Mutation_p.R707C|TAOK2_uc010bzm.1_Missense_Mutation_p.R714C|TAOK2_uc002dvd.1_Missense_Mutation_p.R534C	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	707	Potential.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						TGAGCTCACCCGCCTGCAGCA	0.682													8	14					0	0	0.00307968	0	0
ITGAL	3683	broad.mit.edu	37	16	30500427	30500427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:30500427C>T	uc002dyi.3	+	10	1207	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F	ITGAL_uc002dyj.3_Missense_Mutation_p.S261F|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	344	FG-GAP 3.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GACCTGACTTCCTTCAACATG	0.562													17	24					0	0	0.00121646	0	0
STX4	6810	broad.mit.edu	37	16	31049834	31049834	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:31049834C>T	uc002eal.2	+	8	792	c.568C>T	c.(568-570)CTG>TTG	p.L190L	STX4_uc002eak.2_Silent_p.L188L|STX4_uc002eam.2_Silent_p.L112L	NM_004604	NP_004595	Q12846	STX4_HUMAN	syntaxin 4	190	Cytoplasmic (Potential).|Interaction with CENPF (By similarity).				intracellular protein transport|platelet activation|post-Golgi vesicle-mediated transport	basolateral plasma membrane|cell surface|cytosol|integral to membrane|plasma membrane enriched fraction|specific granule|vacuole	SNAP receptor activity				0						CCCCCAGATCCTGAAGGACAC	0.577													7	28					0	0	0.000442599	0	0
ITGAM	3684	broad.mit.edu	37	16	31332933	31332933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:31332933G>A	uc002ebq.2	+	16	2085	c.1987G>A	c.(1987-1989)GAT>AAT	p.D663N	ITGAM_uc002ebr.2_Missense_Mutation_p.D664N|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_Missense_Mutation_p.D69N|ITGAM_uc002ebs.1_Missense_Mutation_p.D69N	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	663	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						GAGCACACGGGATCGGCTAAG	0.532													11	33					0	0	0.000673444	0	0
ITGAD	3681	broad.mit.edu	37	16	31413511	31413511	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:31413511A>C	uc002ebv.1	+	6	552	c.503A>C	c.(502-504)CAG>CCG	p.Q168P	ITGAD_uc010vfl.1_Missense_Mutation_p.Q168P|ITGAD_uc010cap.1_Missense_Mutation_p.Q168P|ITGAD_uc002ebw.1_Intron	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	168	Extracellular (Potential).|VWFA.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GACTTTAACCAGATGAAGGGC	0.562													12	65					0	0	0.00316338	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404138	34404138	+	RNA	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:34404138A>C	uc002edv.1	-	1		c.625T>G				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						CTGCTCCAACAGCTGCCGGTT	0.577													4	15					0	0	0.00024832	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404168	34404168	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:34404168G>A	uc002edv.1	-	1		c.595C>T				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						GACCTCTGCGGCCTTCTTGTT	0.552													4	15					0	0	0.00116845	0	0
NETO2	81831	broad.mit.edu	37	16	47117221	47117221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:47117221C>T	uc002eer.1	-	9	1874	c.1489G>A	c.(1489-1491)GAA>AAA	p.E497K	NETO2_uc002eeq.1_Missense_Mutation_p.E232K|NETO2_uc010vgf.1_Missense_Mutation_p.E354K	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	497	Cytoplasmic (Potential).					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				ACTCGGTCTTCCAGGGCCTGC	0.438										HNSCC(25;0.065)			17	36					0	0	0.00074312	0	0
PHKB	5257	broad.mit.edu	37	16	47627449	47627449	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:47627449C>T	uc002eev.3	+	11	1159	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	PHKB_uc002eeu.3_Silent_p.F362F	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	369					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				CCATATTTTTCCTTTATATGA	0.249													7	28					0	0	0.00307968	0	0
ABCC11	85320	broad.mit.edu	37	16	48245042	48245042	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:48245042G>A	uc002eff.1	-	10	1775	c.1425C>T	c.(1423-1425)GTC>GTT	p.V475V	ABCC11_uc002efg.1_Silent_p.V475V|ABCC11_uc002efh.1_Silent_p.V475V|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	475	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CCTCCTCAAAGACCAGAGCTT	0.522									Cerumen_Type				22	66					0	0	0.00332997	0	0
ABCC11	85320	broad.mit.edu	37	16	48261816	48261816	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:48261816C>T	uc002eff.1	-	3	646	c.296G>A	c.(295-297)TGG>TAG	p.W99*	ABCC11_uc002efg.1_Nonsense_Mutation_p.W99*|ABCC11_uc002efh.1_Nonsense_Mutation_p.W99*|ABCC11_uc010vgl.1_Nonsense_Mutation_p.W99*	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	99	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CGGGGTGAGCCATGACACGGT	0.527									Cerumen_Type				14	41					0	0	0.00244969	0	0
BRD7	29117	broad.mit.edu	37	16	50354206	50354206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:50354206G>A	uc002egf.1	-	16	1776	c.1709C>T	c.(1708-1710)CCG>CTG	p.P570L	BRD7_uc002ege.1_Missense_Mutation_p.P571L	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	570					cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				GATCATGTTCGGAGGGGGTCT	0.468													8	12					0	0	0.000442599	0	0
BRD7	29117	broad.mit.edu	37	16	50383950	50383950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:50383950G>A	uc002egf.1	-	6	642	c.575C>T	c.(574-576)TCC>TTC	p.S192F	BRD7_uc002ege.1_Missense_Mutation_p.S192F	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	192	Bromo.				cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				TTCTTCTATGGACTGATAGTC	0.343													18	57					0	0	0.00074312	0	0
CYLD	1540	broad.mit.edu	37	16	50785695	50785695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:50785695C>T	uc002egp.1	+	5	1100	c.685C>T	c.(685-687)CCT>TCT	p.P229S	CYLD_uc002egn.1_Missense_Mutation_p.P229S|CYLD_uc002ego.2_Missense_Mutation_p.P229S|CYLD_uc010cbs.1_Missense_Mutation_p.P229S|CYLD_uc002egq.1_Missense_Mutation_p.P229S|CYLD_uc002egr.1_Missense_Mutation_p.P229S|CYLD_uc002egs.1_Missense_Mutation_p.P229S	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	229	Interaction with TRIP.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				CGAACTTCCTCCTTTGGAAAT	0.413			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				6	14					0	0	0.00116845	0	0
AKTIP	64400	broad.mit.edu	37	16	53529232	53529232	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:53529232C>A	uc002ehk.2	-	4	466	c.255G>T	c.(253-255)TTG>TTT	p.L85F	AKTIP_uc002ehl.2_Missense_Mutation_p.L85F|AKTIP_uc002ehm.2_Missense_Mutation_p.L85F|AKTIP_uc010vgx.1_Missense_Mutation_p.L85F	NM_001012398	NP_001012398	Q9H8T0	AKTIP_HUMAN	AKT interacting protein	85					apoptosis|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|positive regulation of protein binding|positive regulation of protein phosphorylation|protein transport	FHF complex|plasma membrane	acid-amino acid ligase activity|protein binding				0		all_cancers(37;0.14)				GCTTCACAACCAAGGTACTAC	0.418													9	206					0.000978159	0.00272106	0.000978159	1	0
FTO	79068	broad.mit.edu	37	16	53859927	53859927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:53859927C>T	uc002ehr.2	+	3	497	c.275C>T	c.(274-276)ACT>ATT	p.T92I	FTO_uc010vha.1_Intron	NM_001080432	NP_001073901	Q9C0B1	FTO_HUMAN	fat mass and obesity associated	92	Fe2OG dioxygenase domain.				DNA dealkylation involved in DNA repair|oxidative single-stranded DNA demethylation|oxidative single-stranded RNA demethylation|RNA repair	nucleus	DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidative DNA demethylase activity|oxidative RNA demethylase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GATCTGCTCACTCCGGTATCT	0.502													6	53					0	0	0.00307968	0	0
GPR56	9289	broad.mit.edu	37	16	57685217	57685217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:57685217C>T	uc002emb.2	+	4	462	c.170C>T	c.(169-171)TCC>TTC	p.S57F	GPR56_uc002elz.1_Intron|GPR56_uc002ema.1_5'UTR|GPR56_uc002emc.2_Missense_Mutation_p.S57F|GPR56_uc002emf.2_Missense_Mutation_p.S57F|GPR56_uc010vhs.1_Missense_Mutation_p.S57F|GPR56_uc002emd.2_Missense_Mutation_p.S57F|GPR56_uc002eme.2_Missense_Mutation_p.S57F|GPR56_uc010vht.1_Missense_Mutation_p.S62F|GPR56_uc002emg.3_Missense_Mutation_p.S57F|GPR56_uc010vhu.1_5'UTR	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	57	Extracellular (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						CTGCGCATCTCCATCGAGAAC	0.622													9	37					0	0	0.000442599	0	0
CCDC113	29070	broad.mit.edu	37	16	58292312	58292312	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:58292312C>T	uc002ene.2	+	4	510	c.431C>T	c.(430-432)TCG>TTG	p.S144L	CCDC113_uc010vid.1_Missense_Mutation_p.S90L	NM_014157	NP_054876	Q9H0I3	CC113_HUMAN	coiled-coil domain containing 113 isoform 1	144	Potential.					protein complex					0						AGTGAAGTTTCGAGAGAAGTG	0.423													29	46					0	0	0.00283554	0	0
CKLF	51192	broad.mit.edu	37	16	66592128	66592128	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:66592128C>T	uc002eow.2	+	2	261	c.114C>T	c.(112-114)ATC>ATT	p.I38I	CKLF_uc002eox.1_Silent_p.I38I|CKLF_uc002eot.2_Silent_p.I38I|CKLF_uc002eou.2_Intron|CKLF_uc002eov.2_Intron	NM_016951	NP_058647	Q9UBR5	CKLF_HUMAN	chemokine-like factor isoform a	38	MARVEL.				cell proliferation|lymphocyte chemotaxis|macrophage chemotaxis|neutrophil chemotaxis|secretion by cell	extracellular space|integral to membrane	chemokine activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0689)|Epithelial(162;0.217)		TTTTTATCATCGCACAAGCCC	0.323													53	146					0	0	0.00361006	0	0
ATP6V0D1	9114	broad.mit.edu	37	16	67472455	67472455	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:67472455G>A	uc002ete.1	-	8	1132	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I	ATP6V0D1_uc010vjo.1_Silent_p.I385I|ATP6V0D1_uc010vjn.1_Silent_p.I267I	NM_004691	NP_004682	P61421	VA0D1_HUMAN	ATPase, H+ transporting, lysosomal, V0 subunit	344					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0439)|Epithelial(162;0.101)		TGTAGTTGTCGATTTTGGCGC	0.413													6	20					0	0	0.00198382	0	0
CTCF	10664	broad.mit.edu	37	16	67650748	67650748	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:67650748C>T	uc002etl.2	+	5	1343	c.1053C>T	c.(1051-1053)TTC>TTT	p.F351F	CTCF_uc010cek.2_Silent_p.F23F	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	351	C2H2-type 4.				chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		AGAAGCCATTCAAGTGTTCCA	0.463													12	151					0	0	0.00316338	0	0
RANBP10	57610	broad.mit.edu	37	16	67765479	67765479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:67765479G>A	uc002eud.2	-	7	901	c.785C>T	c.(784-786)TCA>TTA	p.S262L	RANBP10_uc010ceo.2_Missense_Mutation_p.S33L|RANBP10_uc010vju.1_Missense_Mutation_p.S206L|RANBP10_uc010vjv.1_Missense_Mutation_p.S145L|RANBP10_uc010vjw.1_5'Flank|RANBP10_uc010vjx.1_Missense_Mutation_p.S262L|RANBP10_uc010vjy.1_Missense_Mutation_p.S130L	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	262	LisH.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		GAGGTAAGATGAAACCATGCT	0.493													6	9					0	0	0.00116845	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67861275	67861275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:67861275G>A	uc002euj.2	+	14	2020	c.1626G>A	c.(1624-1626)ATG>ATA	p.M542I	TSNAXIP1_uc010vjz.1_Missense_Mutation_p.M419I|TSNAXIP1_uc002euf.3_Missense_Mutation_p.M275I|TSNAXIP1_uc010vka.1_Missense_Mutation_p.M596I|TSNAXIP1_uc010vkb.1_Missense_Mutation_p.M527I|TSNAXIP1_uc002eug.3_Missense_Mutation_p.M250I|TSNAXIP1_uc002euh.3_Missense_Mutation_p.M250I|TSNAXIP1_uc002eui.3_Missense_Mutation_p.M250I|TSNAXIP1_uc002euk.2_Missense_Mutation_p.M275I	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein	542					cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		CACTGTTTATGGAGGTGGGTG	0.622													5	23					0	0	0.00198382	0	0
THAP11	57215	broad.mit.edu	37	16	67877059	67877059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:67877059G>A	uc002euo.2	+	1	847	c.602G>A	c.(601-603)GGC>GAC	p.G201D	CENPT_uc002eun.3_Intron	NM_020457	NP_065190	Q96EK4	THA11_HUMAN	THAP domain containing 11	201	Ala-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|identical protein binding|metal ion binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00412)|Epithelial(162;0.018)|all cancers(182;0.118)		GCCGCAGAGGGCGCAGCCGCT	0.667													13	34					0	0	0.00185496	0	0
DPEP2	64174	broad.mit.edu	37	16	68024017	68024017	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:68024017G>A	uc010cey.2	-	7	1091	c.927C>T	c.(925-927)GTC>GTT	p.V309V	DPEP2_uc002evd.3_Silent_p.V309V|DPEP2_uc002eve.2_Silent_p.V309V|DPEP2_uc002evf.2_RNA	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	309					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		ACACCATCACGACGCCACCGT	0.577													7	25					0	0	0.00198382	0	0
SLC7A6	9057	broad.mit.edu	37	16	68330310	68330310	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:68330310A>C	uc002evt.1	+	10	1472	c.1163A>C	c.(1162-1164)CAG>CCG	p.Q388P	SLC7A6_uc002evu.1_Missense_Mutation_p.Q388P|SLC7A6_uc002evv.1_RNA|SLC7A6_uc010cfc.1_RNA	NM_001076785	NP_001070253	Q92536	YLAT2_HUMAN	solute carrier family 7 (cationic amino acid	388	Helical; (Potential).			Q -> R (in Ref. 3; CAH18146).	blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|antiporter activity			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.034)|Epithelial(162;0.0948)		GATGTTTTCCAGCTTATCAAC	0.587													4	54					0	0	0.000602214	0	0
NOB1	28987	broad.mit.edu	37	16	69782979	69782979	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:69782979C>A	uc002exs.2	-	6	584	c.568G>T	c.(568-570)GAA>TAA	p.E190*		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	190	Poly-Glu.					nucleus	metal ion binding|protein binding				0						CCGTTTTCTTCCTCCTCCTCC	0.517													14	37					6.94344e-10	1.9454e-09	0.00074312	1	0
WWP2	11060	broad.mit.edu	37	16	69832662	69832662	+	Missense_Mutation	SNP	C	T	T	rs150059700	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:69832662C>T	uc002exu.1	+	4	237	c.148C>T	c.(148-150)CCC>TCC	p.P50S	WWP2_uc002ext.2_Missense_Mutation_p.P50S|WWP2_uc002exv.1_Missense_Mutation_p.P50S	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	50	C2.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						GGATGGACTCCCCAGTGAGAC	0.493											OREG0023909	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	65					0	0	0.00074312	0	0
VAC14	55697	broad.mit.edu	37	16	70816996	70816996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:70816996G>A	uc002ezm.2	-	7	1009	c.751C>T	c.(751-753)CCC>TCC	p.P251S	VAC14_uc010cfw.2_Missense_Mutation_p.P17S|VAC14_uc002ezn.2_Intron	NM_018052	NP_060522	Q08AM6	VAC14_HUMAN	Vac14 homolog	251					interspecies interaction between organisms	endoplasmic reticulum|endosome membrane|microsome	protein binding|receptor activity			pancreas(1)|skin(1)	2		Ovarian(137;0.0699)				ACACTGGAGGGGTTCTTCTTA	0.517													23	97					0	0	0.00332997	0	0
HYDIN	54768	broad.mit.edu	37	16	70841527	70841528	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:70841527_70841528TC>GT	uc002ezr.2	-	86	15446_15447	c.15318_15319GA>AC	c.(15316-15321)GAGACT>GAACCT	p.T5107P	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5108										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTAACTCCAGTCTCACTCCCTT	0.47													7	42					0	0	6.4e-05	0	0
HYDIN	54768	broad.mit.edu	37	16	70841530	70841530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:70841530C>T	uc002ezr.2	-	86	15444	c.15316G>A	c.(15316-15318)GAG>AAG	p.E5106K	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5107										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ACTCCAGTCTCACTCCCTTCA	0.478													9	42					0	0	0.00136819	0	0
HYDIN	54768	broad.mit.edu	37	16	70926280	70926280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:70926280G>A	uc002ezr.2	-	56	9526	c.9398C>T	c.(9397-9399)CCT>CTT	p.P3133L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3134										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCGCAGAACAGGCTGGTGCTC	0.483													9	25					0	0	0.00136819	0	0
CALB2	794	broad.mit.edu	37	16	71423651	71423651	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:71423651G>A	uc002faa.3	+	11	770	c.700_splice	c.e11-1	p.E234_splice	CALB2_uc010vme.1_Splice_Site|CALB2_uc002fac.3_Splice_Site	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1								calcium ion binding				0		Ovarian(137;0.125)				GTATTTCCTAGGAAATGAATA	0.517													17	62					0	0	0.00074312	0	0
PMFBP1	83449	broad.mit.edu	37	16	72153954	72153954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:72153954C>T	uc002fcc.3	-	20	2990	c.2818G>A	c.(2818-2820)GAA>AAA	p.E940K	PMFBP1_uc002fcd.2_Missense_Mutation_p.E935K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.E810K	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	940	Potential.									ovary(2)	2		Ovarian(137;0.179)				TTCTTGTTTTCCTGCTGCAAG	0.537													22	71					0	0	0.00395357	0	0
PMFBP1	83449	broad.mit.edu	37	16	72160027	72160027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:72160027G>A	uc002fcc.3	-	15	2280	c.2108C>T	c.(2107-2109)GCC>GTC	p.A703V	PMFBP1_uc002fcd.2_Missense_Mutation_p.A698V|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Missense_Mutation_p.A553V|PMFBP1_uc010cgo.1_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	703	Potential.									ovary(2)	2		Ovarian(137;0.179)				CTTCTGAAGGGCTATCTTTAA	0.507													14	63					0	0	0.000422831	0	0
WDR59	79726	broad.mit.edu	37	16	74923603	74923603	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:74923603G>A	uc002fdh.1	-	21	2295	c.2193C>T	c.(2191-2193)TCC>TCT	p.S731S	WDR59_uc002fdf.1_Silent_p.S176S|WDR59_uc002fdg.1_Silent_p.S323S	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	731										ovary(1)|breast(1)	2						AAACCTACAGGGACTCCAGCA	0.478													9	23					0	0	0.000274275	0	0
VAT1L	57687	broad.mit.edu	37	16	77896678	77896678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:77896678C>T	uc002ffg.1	+	4	710	c.613C>T	c.(613-615)CCC>TCC	p.P205S		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	205							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						TTCCACTGTCCCCAACGTGAC	0.488													18	38					0	0	0.00278032	0	0
CDYL2	124359	broad.mit.edu	37	16	80646538	80646538	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:80646538G>A	uc002ffs.2	-	5	1308	c.1203C>T	c.(1201-1203)ATC>ATT	p.I401I		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	401						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CGACGCCCAGGATCTGGGGGA	0.617													12	30					0	0	0.00185496	0	0
PLCG2	5336	broad.mit.edu	37	16	81902886	81902886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:81902886C>T	uc002fgt.2	+	6	699	c.547C>T	c.(547-549)CTT>TTT	p.L183F	PLCG2_uc010chg.1_Missense_Mutation_p.L183F	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	183					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TGCCAAGTTCCTTAAAGATAA	0.468													19	82					0	0	0.00121646	0	0
PLCG2	5336	broad.mit.edu	37	16	81990323	81990323	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:81990323C>T	uc002fgt.2	+	32	3746	c.3594C>T	c.(3592-3594)TCC>TCT	p.S1198S		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	1198					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						AACTTTACTCCTCCTGTCGCC	0.418													5	18					0	0	0.00116845	0	0
CDH13	1012	broad.mit.edu	37	16	83711861	83711861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:83711861G>A	uc002fgx.2	+	10	1453	c.1333G>A	c.(1333-1335)GAA>AAA	p.E445K	CDH13_uc010vns.1_Missense_Mutation_p.E492K|CDH13_uc010vnt.1_Missense_Mutation_p.E191K|CDH13_uc010vnu.1_Missense_Mutation_p.E406K	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	445	Cadherin 3.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GATCAAAGTGGAAAATGAAGA	0.547													5	14					0	0	0.00198382	0	0
KCNG4	93107	broad.mit.edu	37	16	84270431	84270431	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:84270431T>A	uc010voc.1	-	2	782	c.661A>T	c.(661-663)AAG>TAG	p.K221*	KCNG4_uc002fhu.1_Nonsense_Mutation_p.K221*	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	221						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GCGAAGACCTTCCCGGGCAGC	0.682													5	21					0	0	0.000602214	0	0
KCNG4	93107	broad.mit.edu	37	16	84270731	84270731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:84270731C>T	uc010voc.1	-	2	482	c.361G>A	c.(361-363)GGG>AGG	p.G121R	KCNG4_uc002fhu.1_Missense_Mutation_p.G121R	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	121	Helical; Name=Segment S1; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity	p.G121G(3)		breast(3)	3						ACGATCACCCCGAAGGCGCTG	0.622													8	9					0	0	0.00307968	0	0
ATP2C2	9914	broad.mit.edu	37	16	84444324	84444324	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:84444324G>A	uc002fhx.2	+	6	557	c.468G>A	c.(466-468)GAG>GAA	p.E156E	ATP2C2_uc010chj.2_Silent_p.E156E|ATP2C2_uc002fhy.2_Silent_p.E173E|ATP2C2_uc002fhz.2_Intron	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	156	Cytoplasmic (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						ACAGGTCGGAGAAATCTCTGG	0.542													10	27					0	0	0.000978159	0	0
ATP2C2	9914	broad.mit.edu	37	16	84472843	84472844	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:84472843_84472844GG>AA	uc002fhx.2	+	12	1147_1148	c.1058_1059GG>AA	c.(1057-1059)CGG>CAA	p.R353Q	ATP2C2_uc010chj.2_Missense_Mutation_p.R353Q|ATP2C2_uc002fhy.2_Missense_Mutation_p.R370Q|ATP2C2_uc002fhz.2_Missense_Mutation_p.R202Q	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	353	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GGAGTGCTGCGGATGGCCAAGA	0.574													7	26					0	0	6.4e-05	0	0
SLC7A5	8140	broad.mit.edu	37	16	87873356	87873356	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:87873356G>A	uc002fkm.2	-	5	963	c.891C>T	c.(889-891)TTC>TTT	p.F297F		NM_003486	NP_003477	Q01650	LAT1_HUMAN	solute carrier family 7 (cationic amino acid	297					blood coagulation|cell differentiation|cellular amino acid metabolic process|ion transport|leukocyte migration|nervous system development	apical plasma membrane|cytosol|integral to membrane	neutral amino acid transmembrane transporter activity|peptide antigen binding				0				BRCA - Breast invasive adenocarcinoma(80;0.049)		ACAGGGTGGTGAAGTAGGCCA	0.637													4	11					0	0	0.000602214	0	0
ZNF778	197320	broad.mit.edu	37	16	89293787	89293788	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr16:89293787_89293788CC>TT	uc002fmv.2	+	6	1346_1347	c.1007_1008CC>TT	c.(1006-1008)CCC>CTT	p.P336L	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Missense_Mutation_p.P294L|ZNF778_uc010vpg.1_Missense_Mutation_p.P99L	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	336					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		GGACAGAAGCCCTATGAATGTA	0.475													13	53					0	0	6.4e-05	0	0
GEMIN4	50628	broad.mit.edu	37	17	650806	650806	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:650806G>A	uc002frs.1	-	2	596	c.477C>T	c.(475-477)TTC>TTT	p.F159F	GEMIN4_uc010vqa.1_Silent_p.F159F	NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	159					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		CGTCCAGGAAGAAGGCCACGT	0.582													64	38					0	0	0.00361006	0	0
PRPF8	10594	broad.mit.edu	37	17	1584244	1584244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:1584244G>A	uc002fte.2	-	7	1085	c.971C>T	c.(970-972)CCA>CTA	p.P324L		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	324						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		GACATGGTGTGGAAGATTGTT	0.453													43	159					0	0	0.00361006	0	0
MNT	4335	broad.mit.edu	37	17	2290583	2290583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:2290583G>A	uc002fur.2	-	6	1613	c.1361C>T	c.(1360-1362)ACT>ATT	p.T454I		NM_020310	NP_064706	Q99583	MNT_HUMAN	MAX binding protein	454					multicellular organismal development|negative regulation of cell proliferation|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			skin(1)	1				Colorectal(2;1.37e-05)|READ - Rectum adenocarcinoma(2;8.68e-05)		GTGGTTCACAGTCTGGATGAC	0.687													13	25					0	0	0.000422831	0	0
OR3A4	390756	broad.mit.edu	37	17	3213919	3213919	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:3213919C>T	uc002fvi.2	+	1	381	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						CCGAGCTCTTCTTCTTCCACC	0.562													9	18					0	0	0.000978159	0	0
ITGAE	3682	broad.mit.edu	37	17	3651330	3651330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:3651330G>A	uc002fwo.3	-	17	2140	c.2041C>T	c.(2041-2043)CGC>TGC	p.R681C		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	681	FG-GAP 7.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		ACCTTCAGGCGAACCACAGGC	0.522													8	31					0	0	0.000442599	0	0
P2RX1	5023	broad.mit.edu	37	17	3806518	3806518	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:3806518T>C	uc002fww.2	-	7	1166	c.725A>G	c.(724-726)AAC>AGC	p.N242S		NM_002558	NP_002549	P51575	P2RX1_HUMAN	purinergic receptor P2X1	242	Extracellular (Potential).				platelet activation	integral to plasma membrane	calcium channel activity|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity			ovary(1)|skin(1)	2				LUAD - Lung adenocarcinoma(2;1.9e-05)|Lung(3;0.0173)		GGTGCTGAAGTTCTGGCCTGA	0.582													16	25					0	0	0.000958276	0	0
ZZEF1	23140	broad.mit.edu	37	17	3975958	3975958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:3975958G>A	uc002fxe.2	-	25	3842	c.3778C>T	c.(3778-3780)CCA>TCA	p.P1260S	ZZEF1_uc002fxj.1_5'Flank	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1260							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCCAACTCTGGACAAACCTGA	0.453													21	27					0	0	0.00121646	0	0
ALOX15	246	broad.mit.edu	37	17	4540539	4540539	+	Silent	SNP	G	A	A	rs146411013		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:4540539G>A	uc002fyh.2	-	7	836	c.822C>T	c.(820-822)TTC>TTT	p.F274F	ALOX15_uc010vsd.1_Silent_p.F235F|ALOX15_uc010vse.1_Silent_p.F296F	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	274	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	AGTCAGCTTCGAACAGTGTGC	0.532													8	26					0	0	0.000274275	0	0
ARRB2	409	broad.mit.edu	37	17	4623752	4623752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:4623752C>T	uc002fyj.2	+	13	1294	c.1066C>T	c.(1066-1068)CCC>TCC	p.P356S	ARRB2_uc002fyk.2_Missense_Mutation_p.P341S|ARRB2_uc002fyl.2_Missense_Mutation_p.P356S|ARRB2_uc010vsg.1_Missense_Mutation_p.P377S|ARRB2_uc002fym.2_Missense_Mutation_p.P341S|ARRB2_uc002fyn.2_Missense_Mutation_p.P164S|ARRB2_uc010ckq.2_Missense_Mutation_p.P164S|ARRB2_uc002fyo.2_Missense_Mutation_p.P164S	NM_004313	NP_004304	P32121	ARRB2_HUMAN	arrestin, beta 2 isoform 1	356	Interaction with TRAF6.				cell chemotaxis|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|G-protein coupled receptor internalization|negative regulation of natural killer cell mediated cytotoxicity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway	coated pit|cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	angiotensin receptor binding|ubiquitin protein ligase binding				0						CATCCCCCTCCCCAGACCCCA	0.627													13	48					0	0	0.00316338	0	0
ZNF594	84622	broad.mit.edu	37	17	5086142	5086142	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:5086142G>A	uc010cla.1	-	2	1566	c.1410C>T	c.(1408-1410)AGC>AGT	p.S470S		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	470	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						GTGACCTCTGGCTAAAGGCTT	0.468													11	38					0	0	0.000978159	0	0
ZNF594	84622	broad.mit.edu	37	17	5086753	5086753	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:5086753A>C	uc010cla.1	-	2	955	c.799T>G	c.(799-801)TAT>GAT	p.Y267D		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	267	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						TAACATTCATAGGGTTTCTCT	0.408													45	17					0	0	0.00321405	0	0
PITPNM3	83394	broad.mit.edu	37	17	6376061	6376061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:6376061C>T	uc002gdd.3	-	11	1496	c.1345G>A	c.(1345-1347)GAG>AAG	p.E449K	PITPNM3_uc010cln.2_Missense_Mutation_p.E413K|PITPNM3_uc010clm.2_5'UTR|PITPNM3_uc002gdc.3_Missense_Mutation_p.E40K	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	449	DDHD.				phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		AACTTGGGCTCCAGCAGTGGC	0.652													7	18					0	0	0.000274275	0	0
PITPNM3	83394	broad.mit.edu	37	17	6387017	6387017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:6387017C>T	uc002gdd.3	-	6	558	c.407G>A	c.(406-408)GGG>GAG	p.G136E	PITPNM3_uc010cln.2_Missense_Mutation_p.G100E|PITPNM3_uc002gdc.3_5'Flank	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	136					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		GATGTTTCCCCCATGCAGGAC	0.632													12	15					0	0	0.000422831	0	0
PITPNM3	83394	broad.mit.edu	37	17	6441390	6441390	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:6441390G>C	uc002gdd.3	-	2	186	c.35C>G	c.(34-36)CCG>CGG	p.P12R	PITPNM3_uc010cln.2_Missense_Mutation_p.P12R	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	12					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		ACCGCCGCCCGGGGGAGGACC	0.562													7	11					0	0	0.000978159	0	0
FBXO39	162517	broad.mit.edu	37	17	6684060	6684060	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:6684060G>A	uc010vtg.1	+	2	993	c.873G>A	c.(871-873)CGG>CGA	p.R291R		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	291										ovary(1)|skin(1)	2						TCTTTGAACGGATCATGAAGT	0.542													12	11					0	0	0.00136819	0	0
DLG4	1742	broad.mit.edu	37	17	7095232	7095233	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7095232_7095233GG>AA	uc002get.3	-	20	3285_3286	c.2084_2085CC>TT	c.(2083-2085)CCC>CTT	p.P695L	DLG4_uc010vtm.1_Intron|DLG4_uc010vtn.1_Missense_Mutation_p.P592L|DLG4_uc010cly.2_Missense_Mutation_p.P649L|DLG4_uc010vto.1_Missense_Mutation_p.P692L	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	652	Guanylate kinase-like.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						CCAGGGAGCGGGGGCGGATGAA	0.668													11	48					0	0	6.4e-05	0	0
PHF23	79142	broad.mit.edu	37	17	7139776	7139776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7139776G>A	uc002gfa.2	-	4	697	c.470C>T	c.(469-471)ACC>ATC	p.T157I	DVL2_uc002gez.1_5'Flank|DVL2_uc010vtr.1_5'Flank|DVL2_uc010clz.1_5'Flank|PHF23_uc010vtt.1_Missense_Mutation_p.T90I|PHF23_uc010cma.2_Missense_Mutation_p.T27I	NM_024297	NP_077273	Q9BUL5	PHF23_HUMAN	PHD finger protein 23	157							zinc ion binding				0						GGGCCGGGAGGTATGTGTCAG	0.572													10	38					0	0	0.000673444	0	0
ACAP1	9744	broad.mit.edu	37	17	7240655	7240655	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7240655C>A	uc002ggd.2	+	2	284	c.78C>A	c.(76-78)GCC>GCA	p.A26A		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	26	BAR.|Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						TGGTGGAAGCCGAAGTGTCAG	0.572													6	89					0.00307968	0.00853147	0.00307968	1	0
ACAP1	9744	broad.mit.edu	37	17	7250350	7250350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7250350G>A	uc002ggd.2	+	14	1338	c.1132G>A	c.(1132-1134)GGC>AGC	p.G378S		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	378	Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						TCTCCCCCAGGGCTCAGGACA	0.672													7	2					0	0	0.00198382	0	0
ZBTB4	57659	broad.mit.edu	37	17	7367126	7367126	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7367126G>T	uc002ghc.3	-	4	1425	c.1175C>A	c.(1174-1176)CCG>CAG	p.P392Q	ZBTB4_uc002ghd.3_Missense_Mutation_p.P392Q	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	392					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		AAGGAGGCCCGGGCTAATGCC	0.577													5	66					0.00198382	0.0055105	0.00198382	1	0
AMAC1L3	643664	broad.mit.edu	37	17	7386304	7386305	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7386304_7386305GG>AA	uc010cmj.1	+	2	1116_1117	c.1001_1002GG>AA	c.(1000-1002)GGG>GAA	p.G334E	ZBTB4_uc002ghd.3_Intron|POLR2A_uc002ghe.2_5'Flank|POLR2A_uc002ghf.3_5'Flank	NM_001102614	NP_001096084	P0C7Q6	AMCL3_HUMAN	acyl-malonyl condensing enzyme 1-like 3	334						integral to membrane					0		Prostate(122;0.173)				GAGAGGGAAGGGAAGGTGGAGG	0.559													5	19					0	0	6.4e-05	0	0
TP53	7157	broad.mit.edu	37	17	7578502	7578502	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7578502A>T	uc002gim.2	-	5	622	c.428T>A	c.(427-429)GTG>GAG	p.V143E	TP53_uc002gig.1_Missense_Mutation_p.V143E|TP53_uc002gih.2_Missense_Mutation_p.V143E|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.V11E|TP53_uc010cng.1_Missense_Mutation_p.V11E|TP53_uc002gii.1_Missense_Mutation_p.V11E|TP53_uc010cnh.1_Missense_Mutation_p.V143E|TP53_uc010cni.1_Missense_Mutation_p.V143E|TP53_uc002gij.2_Missense_Mutation_p.V143E|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.V50E|TP53_uc002gio.2_Missense_Mutation_p.V11E|TP53_uc010vug.1_Missense_Mutation_p.V104E	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	143	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		V -> G (in sporadic cancers; somatic mutation).|V -> A (in sporadic cancers; somatic mutation; strong DNA binding ability at 32.5 degrees Celsius; strong reduction of transcriptional activity at 37.5 degrees Celsius).|V -> E (in sporadic cancers; somatic mutation).|V -> M (in sporadic cancers; somatic mutation).|V -> L (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.V143M(16)|p.V143A(15)|p.0?(7)|p.V143E(4)|p.V143L(4)|p.V143V(2)|p.V143fs*27(2)|p.L137_W146del10(1)|p.V143fs*29(1)|p.P142_Q144delPVQ(1)|p.K139fs*4(1)|p.V11A(1)|p.V50A(1)|p.A138_V143delAKTCPV(1)|p.V143G(1)|p.V143_S149del(1)|p.C141fs*5(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCACAGCTGCACAGGGCAGGT	0.587		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			25	10					0	0	0.000878237	0	0
WRAP53	55135	broad.mit.edu	37	17	7605007	7605007	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7605007C>T	uc010vuh.1	+	7	1010	c.855C>T	c.(853-855)TTC>TTT	p.F285F	WRAP53_uc010vui.1_Silent_p.F285F|WRAP53_uc002gip.2_Silent_p.F285F|WRAP53_uc002gir.2_Silent_p.F285F|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Silent_p.F252F|WRAP53_uc010vuj.1_Silent_p.F66F	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	285	WD 3.				positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						CGCTCTGCTTCTCCCCGGATG	0.612													8	30					0	0	0.000274275	0	0
EFNB3	1949	broad.mit.edu	37	17	7611847	7611847	+	Splice_Site	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7611847T>G	uc002gis.2	+	3	905	c.508_splice	c.e3+2	p.S170_splice		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor						cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				TGGGACAAAGTGAGTGGGGCT	0.627													3	12					0	0	6.4e-05	0	0
DNAH2	146754	broad.mit.edu	37	17	7680802	7680802	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7680802G>A	uc002giu.1	+	32	5111	c.5097G>A	c.(5095-5097)GGG>GGA	p.G1699G		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1699	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCATCAGGGGGAACTTGACCA	0.498													168	78					0	0	0.00361006	0	0
DNAH2	146754	broad.mit.edu	37	17	7691218	7691218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7691218C>T	uc002giu.1	+	42	6658	c.6644C>T	c.(6643-6645)TCT>TTT	p.S2215F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2215	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GCAATGGCCTCTCCGGCCACT	0.527													7	44					0	0	0.000442599	0	0
DNAH2	146754	broad.mit.edu	37	17	7727910	7727910	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7727910G>A	uc002giu.1	+	76	11732	c.11718G>A	c.(11716-11718)CTG>CTA	p.L3906L	DNAH2_uc010cnm.1_Silent_p.L844L	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3906	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGCCTAATCTGGACAAGCTGG	0.562													10	37					0	0	0.00244969	0	0
KDM6B	23135	broad.mit.edu	37	17	7753164	7753164	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7753164C>T	uc002giw.1	+	12	3842	c.3466C>T	c.(3466-3468)CGA>TGA	p.R1156*	KDM6B_uc002gix.2_Nonsense_Mutation_p.R458*	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	1156					inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.R1156*(1)		central_nervous_system(1)|pancreas(1)	2						AGGGAAGTTTCGAGAGTCCTA	0.547													29	34					0	0	0.00178596	0	0
CHD3	1107	broad.mit.edu	37	17	7811272	7811272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:7811272G>A	uc002gje.2	+	34	5237	c.5087G>A	c.(5086-5088)GGG>GAG	p.G1696E	CHD3_uc002gjd.2_Missense_Mutation_p.G1755E|CHD3_uc002gjf.2_Missense_Mutation_p.G1662E|CHD3_uc002gjh.2_Missense_Mutation_p.G273E|CHD3_uc002gjj.2_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1696	Required for interaction with PCNT.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CGGTCCAATGGGCGACGAGAG	0.557													7	43					0	0	0.00198382	0	0
PER1	5187	broad.mit.edu	37	17	8045721	8045721	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:8045721C>T	uc002gkd.2	-	21	3553	c.3315G>A	c.(3313-3315)GAG>GAA	p.E1105E	PER1_uc010cns.2_5'Flank|PER1_uc010vuq.1_RNA	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	1105					circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						cagcctcagcctcggAAGAGT	0.438			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					6	21					0	0	0.00116845	0	0
MYH8	4626	broad.mit.edu	37	17	10296170	10296170	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:10296170T>G	uc002gmm.2	-	37	5536	c.5441A>C	c.(5440-5442)CAG>CCG	p.Q1814P	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1814	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTTCTGGATCTGCTTCTTCCC	0.547									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				15	64					0	0	0.00152264	0	0
MYH8	4626	broad.mit.edu	37	17	10302164	10302164	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:10302164A>T	uc002gmm.2	-	29	3997	c.3902T>A	c.(3901-3903)GTC>GAC	p.V1301D	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1301	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						AAGCTGAGAGACTAAAGCATC	0.358									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				18	51					0	0	0.00121646	0	0
MYH8	4626	broad.mit.edu	37	17	10304276	10304276	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:10304276C>T	uc002gmm.2	-	26	3350	c.3255G>A	c.(3253-3255)AAG>AAA	p.K1085K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1085	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CAAATTCTTTCCTTTAGACAG	0.333									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				19	37					0	0	0.00074312	0	0
MYH8	4626	broad.mit.edu	37	17	10304634	10304634	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:10304634G>A	uc002gmm.2	-	24	3161	c.3066C>T	c.(3064-3066)ATC>ATT	p.I1022I	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1022	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CTTTGGTCAGGATGTTGACTT	0.403									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				104	67					0	0	0.00361006	0	0
MYH1	4619	broad.mit.edu	37	17	10408304	10408304	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:10408304G>A	uc002gmo.2	-	22	2608	c.2514C>T	c.(2512-2514)TTC>TTT	p.F838F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	838						muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GTTTGATCTTGAAATACAGCT	0.463													22	30					0	0	0.00188189	0	0
MYH2	4620	broad.mit.edu	37	17	10432765	10432765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:10432765G>A	uc010coi.2	-	25	3279	c.3151C>T	c.(3151-3153)CGC>TGC	p.R1051C	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.R1051C|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1051	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AGGTCCATGCGAAGTTTCTTT	0.383													26	52					0	0	0.00106085	0	0
MYH3	4621	broad.mit.edu	37	17	10555830	10555830	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:10555830G>A	uc002gmq.1	-	3	332	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	85	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CGATCCTGTCGAACTTGGGGG	0.517													59	32					0	0	0.00361006	0	0
DNAH9	1770	broad.mit.edu	37	17	11572799	11572799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:11572799C>T	uc002gne.2	+	17	3109	c.3041C>T	c.(3040-3042)TCG>TTG	p.S1014L	DNAH9_uc010coo.2_Missense_Mutation_p.S308L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1014	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGCCAGTATTCGTACCTCTAT	0.527													33	19					0	0	0.00375469	0	0
DNAH9	1770	broad.mit.edu	37	17	11583132	11583132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:11583132G>A	uc002gne.2	+	18	3480	c.3412G>A	c.(3412-3414)GAA>AAA	p.E1138K	DNAH9_uc010coo.2_Missense_Mutation_p.E432K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1138	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CAAGAAAGTTGAAAAAGGAGA	0.428													53	76					0	0	0.00361006	0	0
DNAH9	1770	broad.mit.edu	37	17	11604564	11604564	+	Silent	SNP	G	A	A	rs55888525		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:11604564G>A	uc002gne.2	+	24	5219	c.5151G>A	c.(5149-5151)CAG>CAA	p.Q1717Q	DNAH9_uc010coo.2_Silent_p.Q1011Q	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1717	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACCCAGCTCAGGTATTCTCCT	0.547													9	38					0	0	0.000274275	0	0
MYOCD	93649	broad.mit.edu	37	17	12656424	12656424	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:12656424C>T	uc002gnn.2	+	10	2118	c.1819C>T	c.(1819-1821)CAG>TAG	p.Q607*	MYOCD_uc002gno.2_Nonsense_Mutation_p.Q607*|MYOCD_uc002gnp.1_Nonsense_Mutation_p.Q511*|MYOCD_uc002gnq.2_Nonsense_Mutation_p.Q326*	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	607					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TGCTCAACTCCAGCCTCTTGG	0.512													28	52					0	0	0.00283554	0	0
MEIS3P1	4213	broad.mit.edu	37	17	15690924	15690924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:15690924C>T	uc002gpc.2	+	1	761	c.740C>T	c.(739-741)ACC>ATC	p.T247I		NR_002211				RecName: Full=Homeobox protein Meis3; AltName: Full=Meis1-related protein 2;												0						GGGGGCTATACCGAGACAGAG	0.587													6	8					0	0	0.00116845	0	0
CCDC144A	9720	broad.mit.edu	37	17	16593942	16593943	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:16593942_16593943CC>TT	uc002gqk.1	+	1	304_305	c.228_229CC>TT	c.(226-231)GTCCGC>GTTTGC	p.R77C		NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	77											0						AGCACGACGTCCGCCTGGAAGA	0.644													21	37					0	0	6.4e-05	0	0
MYO15A	51168	broad.mit.edu	37	17	18022511	18022511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:18022511G>A	uc010vxh.1	+	2	735	c.397G>A	c.(397-399)GCC>ACC	p.A133T		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	133	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AGCGTCCACGGCCATCAACTG	0.662													28	7					0	0	0.001512	0	0
MYO15A	51168	broad.mit.edu	37	17	18024939	18024939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:18024939C>T	uc010vxh.1	+	2	3163	c.2825C>T	c.(2824-2826)CCC>CTC	p.P942L		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	942	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCACCCTCCCCCTGGCCAGGA	0.701													3	2					0	0	0.00024832	0	0
MYO15A	51168	broad.mit.edu	37	17	18043974	18043974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:18043974G>A	uc010vxh.1	+	19	5693	c.5355G>A	c.(5353-5355)ATG>ATA	p.M1785I		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1785	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TGGAAAAGATGGAGAGGTGGG	0.612											OREG0024223	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	61					0	0	0.00121646	0	0
TOP3A	7156	broad.mit.edu	37	17	18186042	18186042	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:18186042T>C	uc002gsx.1	-	16	2220	c.1991A>G	c.(1990-1992)GAC>GGC	p.D664G	TOP3A_uc010cpz.1_Missense_Mutation_p.D116G|TOP3A_uc010vxr.1_Missense_Mutation_p.D194G|TOP3A_uc002gsw.1_Missense_Mutation_p.D116G|TOP3A_uc010vxs.1_Missense_Mutation_p.D562G	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	664	C4-type (Potential).				DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						AAGGACCATGTCCTTGTTGCA	0.577													22	37					0	0	0.00332997	0	0
SLC47A2	146802	broad.mit.edu	37	17	19612071	19612071	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:19612071C>T	uc002gwe.3	-	6	664	c.489G>A	c.(487-489)GTG>GTA	p.V163V	SLC47A2_uc002gwg.3_Silent_p.V163V|SLC47A2_uc002gwf.3_Silent_p.V163V|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_RNA|SLC47A2_uc010cqs.1_RNA|SLC47A2_uc010cqt.1_RNA	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	163	Helical; (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					AAAGAAAAATCACCTGTATGA	0.423													17	53					0	0	0.00152264	0	0
CCDC144C	348254	broad.mit.edu	37	17	20242915	20242915	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:20242915G>A	uc010cqy.1	+	5		c.1004G>A				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						AATTAGAGTGGAAAAACCAAT	0.373													47	50					0	0	0.00361006	0	0
KSR1	8844	broad.mit.edu	37	17	25937142	25937142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:25937142C>T	uc010crg.2	+	18	2375	c.1930C>T	c.(1930-1932)CCT>TCT	p.P644S	KSR1_uc002gzm.2_Missense_Mutation_p.P423S|KSR1_uc002gzn.2_5'UTR	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	779	Protein kinase.				Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		CTATCTGGCCCCTGAGATTGT	0.582											OREG0024262	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	38					0	0	0.00136819	0	0
VTN	7448	broad.mit.edu	37	17	26696819	26696819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:26696819C>T	uc002hbc.2	-	3	387	c.238G>A	c.(238-240)GAT>AAT	p.D80N	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	80					cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	TCCTCGCCATCGTCATAGACC	0.592													17	24					0	0	0.00188189	0	0
PIGS	94005	broad.mit.edu	37	17	26883864	26883864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:26883864G>A	uc002hbo.2	-	9	1434	c.1061C>T	c.(1060-1062)CCC>CTC	p.P354L	PIGS_uc002hbn.2_Missense_Mutation_p.P346L|PIGS_uc010wap.1_Missense_Mutation_p.P293L	NM_033198	NP_149975	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	354	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(2)|urinary_tract(1)|kidney(1)	4	Lung NSC(42;0.00431)					ACCCCAGCGGGGACTATGGAA	0.542													12	6					0	0	0.00185496	0	0
KIAA0100	9703	broad.mit.edu	37	17	26947568	26947568	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:26947568T>A	uc002hbu.2	-	29	5422	c.5323A>T	c.(5323-5325)ATT>TTT	p.I1775F	KIAA0100_uc002hbt.2_Missense_Mutation_p.I104F	NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	1775						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					TTGTTGACAATGTCCAGGATC	0.502													10	24					0	0	0.000442599	0	0
FLOT2	2319	broad.mit.edu	37	17	27207791	27207791	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:27207791G>A	uc002hdc.2	-	10	1311	c.1188C>T	c.(1186-1188)AAC>AAT	p.N396N		NM_004475	NP_004466	Q14254	FLOT2_HUMAN	flotillin 2	396					cell adhesion|epidermis development	cell surface|endocytic vesicle|endosome|membrane fraction					0	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;3.26e-06)|all cancers(11;1.76e-05)|BRCA - Breast invasive adenocarcinoma(11;0.00015)|OV - Ovarian serous cystadenocarcinoma(11;0.0602)			CCAGCAGTCGGTTCACTTCTG	0.567													10	52					0	0	0.000673444	0	0
SEZ6	124925	broad.mit.edu	37	17	27308796	27308796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:27308796G>A	uc002hdp.2	-	2	511	c.317C>T	c.(316-318)CCC>CTC	p.P106L	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.P106L|SEZ6_uc002hdq.1_5'UTR|SEZ6_uc010crz.1_Missense_Mutation_p.P106L	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	106	Pro-rich.|Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			GCGGGGAAGGGGACTTGGGGT	0.637													14	32					0	0	0.00229938	0	0
GIT1	28964	broad.mit.edu	37	17	27909803	27909803	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:27909803G>A	uc002hef.2	-	4	532	c.318C>T	c.(316-318)TTC>TTT	p.F106F	GIT1_uc002heg.2_Silent_p.F106F|GIT1_uc010wbg.1_Silent_p.F106F|GIT1_uc010csb.1_Silent_p.F106F	NM_014030	NP_054749	Q9Y2X7	GIT1_HUMAN	G protein-coupled receptor kinase interactor 1	106	Arf-GAP.				regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|focal adhesion	ARF GTPase activator activity|protein binding|zinc ion binding				0				READ - Rectum adenocarcinoma(3;0.0419)|Colorectal(3;0.069)		TGGCCCTGATGAACTCTGACT	0.612													6	20					0	0	0.00116845	0	0
CPD	1362	broad.mit.edu	37	17	28772953	28772953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:28772953C>T	uc002hfb.1	+	12	2803	c.2788C>T	c.(2788-2790)CTT>TTT	p.L930F	CPD_uc010wbo.1_Missense_Mutation_p.L683F|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	930	Extracellular (Potential).|Carboxypeptidase-like 3.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						GGCTCTGGCTCTTTATCGATA	0.383													55	24					0	0	0.00361006	0	0
NF1	4763	broad.mit.edu	37	17	29533315	29533315	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:29533315C>T	uc002hgg.2	+	12	1651	c.1318C>T	c.(1318-1320)CGA>TGA	p.R440*	NF1_uc002hge.1_Nonsense_Mutation_p.R440*|NF1_uc002hgf.1_Nonsense_Mutation_p.R440*|NF1_uc002hgh.2_Nonsense_Mutation_p.R440*|NF1_uc010csn.1_Nonsense_Mutation_p.R300*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	440					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GGTTGAACTTCGAAATATGTT	0.398			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			37	46					0	0	0.000953801	0	0
NF1	4763	broad.mit.edu	37	17	29546050	29546050	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:29546050C>T	uc002hgg.2	+	14	1888	c.1555C>T	c.(1555-1557)CAA>TAA	p.Q519*	NF1_uc002hge.1_Nonsense_Mutation_p.Q519*|NF1_uc002hgf.1_Nonsense_Mutation_p.Q519*|NF1_uc002hgh.2_Nonsense_Mutation_p.Q519*|NF1_uc010csn.1_Nonsense_Mutation_p.Q379*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	519					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)|p.N510_E547del(1)|p.Q519P(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GCCCGAAACCCAAGGCAGTAC	0.378			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			4	14					0	0	0.00024832	0	0
NF1	4763	broad.mit.edu	37	17	29684049	29684049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:29684049C>T	uc002hgg.2	+	53	8143	c.7810C>T	c.(7810-7812)CTC>TTC	p.L2604F	NF1_uc002hgh.2_Missense_Mutation_p.L2583F|NF1_uc010cso.2_Missense_Mutation_p.L792F|NF1_uc010wbt.1_Missense_Mutation_p.L82F|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2604					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATCAAATGTTCTCTTGGATGA	0.423			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			63	57					0	0	0.00361006	0	0
LRRC37B	114659	broad.mit.edu	37	17	30348289	30348289	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:30348289C>T	uc002hgu.2	+	1	135	c.124C>T	c.(124-126)CTG>TTG	p.L42L	LRRC37B_uc010wbx.1_Intron|LRRC37B_uc010csu.2_Silent_p.L42L	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	42	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				CTCTAACCCCCTGGGGCCACC	0.617													4	39					0	0	0.000602214	0	0
MYO1D	4642	broad.mit.edu	37	17	31039005	31039005	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:31039005C>T	uc002hho.1	-	16	2133	c.2121_splice	c.e16+1	p.K707_splice	MYO1D_uc002hhp.1_Splice_Site_p.K707_splice	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID							myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			tataaaattaCCTTTTGTAGA	0.274													7	54					0	0	0.00307968	0	0
CCL7	6354	broad.mit.edu	37	17	32598267	32598267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:32598267C>T	uc002hhz.2	+	2	249	c.179C>T	c.(178-180)CCC>CTC	p.P60L	CCL7_uc010ctf.2_Intron	NM_006273	NP_006264	P80098	CCL7_HUMAN	chemokine (C-C motif) ligand 7 precursor	60					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding			ovary(1)	1	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		AGCCACTGTCCCCGGGAAGCT	0.493													8	39					0	0	0.000442599	0	0
UNC45B	146862	broad.mit.edu	37	17	33495250	33495250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:33495250C>T	uc002hja.2	+	10	1419	c.1322C>T	c.(1321-1323)GCC>GTC	p.A441V	UNC45B_uc002hjb.2_Missense_Mutation_p.A441V|UNC45B_uc002hjc.2_Missense_Mutation_p.A441V|UNC45B_uc010cto.2_Missense_Mutation_p.A441V	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	441					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				CAGCTGGTGGCCGTGGAGGCC	0.582													9	37					0	0	0.000673444	0	0
AMAC1	146861	broad.mit.edu	37	17	33520657	33520657	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:33520657A>T	uc002hjd.2	-	1	756	c.670T>A	c.(670-672)TTC>ATC	p.F224I		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	224	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CCAGATAGGAAGGCCACTGTT	0.627													27	24					0	0	0.000720815	0	0
SLFN11	91607	broad.mit.edu	37	17	33679392	33679392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:33679392G>A	uc010ctp.2	-	7	3131	c.2689C>T	c.(2689-2691)CCG>TCG	p.P897S	SLFN11_uc010ctq.2_Missense_Mutation_p.P897S|SLFN11_uc002hjh.3_Missense_Mutation_p.P897S|SLFN11_uc002hjg.3_Missense_Mutation_p.P897S|SLFN11_uc010ctr.2_Missense_Mutation_p.P897S	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	897						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCACCCCACGGAAAAATATAC	0.433													49	48					0	0	0.00361006	0	0
SLFN11	91607	broad.mit.edu	37	17	33687286	33687286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:33687286C>T	uc010ctp.2	-	5	1616	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K	SLFN11_uc010ctq.2_Missense_Mutation_p.E392K|SLFN11_uc002hjh.3_Missense_Mutation_p.E392K|SLFN11_uc002hjg.3_Missense_Mutation_p.E392K|SLFN11_uc010ctr.2_Missense_Mutation_p.E392K	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	392						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TGCTGGAGTTCCTTTTTATGT	0.383													5	45					0	0	0.000602214	0	0
SLFN13	146857	broad.mit.edu	37	17	33769167	33769167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:33769167G>A	uc002hjk.1	-	3	1667	c.1337C>T	c.(1336-1338)GCT>GTT	p.A446V	SLFN13_uc010wch.1_Missense_Mutation_p.A446V|SLFN13_uc002hjl.2_Missense_Mutation_p.A446V|SLFN13_uc010ctt.2_Missense_Mutation_p.A128V|SLFN13_uc002hjm.2_Missense_Mutation_p.A115V	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	446						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CAGGTCCACAGCCCAGCTTCT	0.498													15	28					0	0	0.00316338	0	0
RASL10B	91608	broad.mit.edu	37	17	34067432	34067432	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:34067432G>A	uc002hju.2	+	3	587	c.221G>A	c.(220-222)TGG>TAG	p.W74*		NM_033315	NP_201572	Q96S79	RSLAB_HUMAN	RAS-like, family 10, member B precursor	74	Small GTPase-like.				small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			lung(2)|breast(2)	4				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TTGCAGGAGTGGGCAGACACC	0.602													5	30					0	0	0.00198382	0	0
GAS2L2	246176	broad.mit.edu	37	17	34072405	34072405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:34072405C>T	uc002hjv.1	-	6	2139	c.2111G>A	c.(2110-2112)AGG>AAG	p.R704K		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	704					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TGCCTTTGTCCTGGGCCCACT	0.637													29	73					0	0	0.000953801	0	0
GAS2L2	246176	broad.mit.edu	37	17	34073271	34073271	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:34073271C>T	uc002hjv.1	-	6	1273	c.1245G>A	c.(1243-1245)AGG>AGA	p.R415R		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	415					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ATGTGGGAATCCTTCCCCTGG	0.587													12	77					0	0	0.00185496	0	0
TAF15	8148	broad.mit.edu	37	17	34171161	34171161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:34171161C>T	uc002hkd.2	+	13	1173	c.1087C>T	c.(1087-1089)CCG>TCG	p.P363S	TAF15_uc010ctw.1_RNA|TAF15_uc002hkc.2_Missense_Mutation_p.P360S	NM_139215	NP_631961	Q92804	RBP56_HUMAN	TBP-associated factor 15 isoform 1	363	RanBP2-type.|Arg/Gly-rich.				positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		TAF15/NR4A3(33)	bone(33)|lung(1)|skin(1)	35		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		TTGCCCTAATCCGTAAGTGTC	0.527			T	TEC|CHN1|ZNF384	extraskeletal myxoid chondrosarcomas|ALL								9	58					0	0	0.000673444	0	0
DUSP14	11072	broad.mit.edu	37	17	35872649	35872649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:35872649C>T	uc002hnx.2	+	3	569	c.275C>T	c.(274-276)ACC>ATC	p.T92I	DUSP14_uc002hny.2_Missense_Mutation_p.T79I|DUSP14_uc002hnz.2_Missense_Mutation_p.T79I	NM_007026	NP_008957	O95147	DUS14_HUMAN	dual specificity phosphatase 14	92	Tyrosine-protein phosphatase.						MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Breast(25;0.00637)|Ovarian(249;0.15)				TACTTTGACACCGTGGCTGAC	0.557													15	59					0	0	0.000422831	0	0
SYNRG	11276	broad.mit.edu	37	17	35913243	35913243	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:35913243A>G	uc002hoa.2	-	14	2665	c.2582T>C	c.(2581-2583)GTT>GCT	p.V861A	SYNRG_uc010wde.1_Missense_Mutation_p.V783A|SYNRG_uc010wdf.1_Missense_Mutation_p.V783A|SYNRG_uc002hoc.2_Missense_Mutation_p.V782A|SYNRG_uc002hoe.2_Missense_Mutation_p.V783A|SYNRG_uc002hod.2_Missense_Mutation_p.V783A|SYNRG_uc010wdg.1_Missense_Mutation_p.V700A|SYNRG_uc002hob.2_Missense_Mutation_p.V861A|SYNRG_uc002hof.2_Missense_Mutation_p.V573A|SYNRG_uc010cvd.1_Missense_Mutation_p.V661A	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	861					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						CTGGCCACTAACTGTTGGTAA	0.443													9	44					0	0	0.000442599	0	0
SYNRG	11276	broad.mit.edu	37	17	35914040	35914040	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:35914040G>A	uc002hoa.2	-	14	1868	c.1785C>T	c.(1783-1785)TTC>TTT	p.F595F	SYNRG_uc010wde.1_Silent_p.F517F|SYNRG_uc010wdf.1_Silent_p.F517F|SYNRG_uc002hoc.2_Silent_p.F516F|SYNRG_uc002hoe.2_Silent_p.F517F|SYNRG_uc002hod.2_Silent_p.F517F|SYNRG_uc010wdg.1_Silent_p.F434F|SYNRG_uc002hob.2_Silent_p.F595F|SYNRG_uc002hof.2_Silent_p.F307F|SYNRG_uc010cvd.1_Silent_p.F395F	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	595	Interaction with A1P1G1 and A1P1G2.				endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						TTCCTGAGGGGAAGGATGGTG	0.418													19	90					0	0	0.00121646	0	0
SOCS7	30837	broad.mit.edu	37	17	36522283	36522283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:36522283C>T	uc002hqa.2	+	5	1297	c.1174C>T	c.(1174-1176)CTT>TTT	p.L392F	SOCS7_uc010cvl.2_Missense_Mutation_p.L358F|SOCS7_uc002hqb.2_RNA	NM_014598	NP_055413	O14512	SOCS7_HUMAN	suppressor of cytokine signaling 7	392	Mediates interaction with SORBS3.				intracellular signal transduction|negative regulation of signal transduction|regulation of growth	cytoplasm|nucleus|plasma membrane	protein binding|SH3 domain binding			skin(1)	1	Breast(7;3.47e-17)					TGCAGCCAGCCTTCGAGAGTT	0.537													12	45					0	0	0.00185496	0	0
MLLT6	4302	broad.mit.edu	37	17	36874168	36874168	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:36874168T>G	uc002hqi.3	+	12	1917	c.1904T>G	c.(1903-1905)GTT>GGT	p.V635G	MLLT6_uc002hqj.2_Missense_Mutation_p.V70G|MLLT6_uc002hqk.3_5'Flank	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	635					regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					ATGGGTGCCGTTAATCCCCTC	0.557			T	MLL	AL								21	82					0	0	0.000878237	0	0
FBXL20	84961	broad.mit.edu	37	17	37455277	37455277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:37455277G>A	uc010wed.1	-	5	516	c.295C>T	c.(295-297)CGT>TGT	p.R99C	FBXL20_uc002hrt.2_Missense_Mutation_p.R99C|FBXL20_uc010cvu.2_Missense_Mutation_p.R99C	NM_032875	NP_116264	Q96IG2	FXL20_HUMAN	F-box and leucine-rich repeat protein 20	99	LRR 1.					cytoplasm				ovary(1)	1			LUAD - Lung adenocarcinoma(14;0.146)			AGACATCCACGAAGACTTAAC	0.408													39	52					0	0	0.0025221	0	0
GRB7	2886	broad.mit.edu	37	17	37903012	37903012	+	Silent	SNP	G	A	A	rs145504893		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:37903012G>A	uc002hsr.2	+	15	1711	c.1461G>A	c.(1459-1461)GAG>GAA	p.E487E	GRB7_uc002hss.2_Silent_p.E487E|GRB7_uc010cwc.2_Silent_p.E487E|GRB7_uc002hst.2_3'UTR	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	487	SH2.				blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity	p.E487E(1)		lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			AGAGCGAGGAGGAGGGCCGCC	0.622													11	52					0	0	0.000673444	0	0
KRT24	192666	broad.mit.edu	37	17	38857395	38857395	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:38857395C>T	uc002hvd.2	-	3	909	c.852G>A	c.(850-852)GAG>GAA	p.E284E		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	284	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				TTCCTACCTCCTCGTGGTTCT	0.403													35	34					0	0	0.00170553	0	0
KRT24	192666	broad.mit.edu	37	17	38859483	38859483	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:38859483G>A	uc002hvd.2	-	1	520	c.463C>T	c.(463-465)CTA>TTA	p.L155L		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	155	Rod.|Coil 1A.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				ACCTTGTCTAGGTAATTGGCC	0.527													27	151					0	0	0.00127121	0	0
KRT40	125115	broad.mit.edu	37	17	39140423	39140423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39140423G>A	uc010cxh.1	-	3	264	c.103C>T	c.(103-105)CCC>TCC	p.P35S	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	35	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				CAGGTACCGGGGAGACAAGCT	0.582													13	10					0	0	0.00136819	0	0
KRTAP3-3	85293	broad.mit.edu	37	17	39150152	39150152	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39150152G>C	uc002hvr.1	-	1	234	c.198C>G	c.(196-198)TTC>TTG	p.F66L		NM_033185	NP_149441	Q9BYR6	KRA33_HUMAN	keratin associated protein 3-3	66						keratin filament	structural molecule activity				0		Breast(137;0.00043)				AGTTGAGCAGGAAGCAGGTGG	0.617													12	57					0	0	0.000978159	0	0
KRTAP3-2	83897	broad.mit.edu	37	17	39155897	39155897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39155897G>A	uc002hvs.2	-	1	242	c.209C>T	c.(208-210)TCC>TTC	p.S70F		NM_031959	NP_114165	Q9BYR7	KRA32_HUMAN	keratin associated protein 3.2	70						keratin filament	structural molecule activity				0		Breast(137;0.00043)				TGGCTGGCAGGAGTTGAGCAG	0.612													13	51					0	0	0.00316338	0	0
KRTAP1-3	81850	broad.mit.edu	37	17	39190932	39190932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39190932G>A	uc002hvv.2	-	1	176	c.142C>T	c.(142-144)CCT>TCT	p.P48S		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	58			Missing (in allele KAP1.9).	GFPSFSTSGTCSS -> DFLASQLVDLQL (in Ref. 1).		extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GAGAAGCTAGGAAATCCGCAG	0.622													13	64					0	0	0.00244969	0	0
KRTAP4-3	85290	broad.mit.edu	37	17	39324205	39324205	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39324205A>G	uc010cxl.2	-	1	220	c.220T>C	c.(220-222)TGC>CGC	p.C74R		NM_033187	NP_149443	Q9BYR4	KRA43_HUMAN	keratin associated protein 4-3	74	29 X 5 AA repeats of C-C-[GIKRQVH]-[SPT]- [STA].|9.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			gaaatgcagcagctggggcgg	0.114													3	9					0	0	0.000602214	0	0
KRT33A	3883	broad.mit.edu	37	17	39502485	39502485	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39502485G>A	uc002hwk.1	-	7	1138	c.1101C>T	c.(1099-1101)CTC>CTT	p.L367L		NM_004138	NP_004129	O76009	KT33A_HUMAN	keratin 33A	367	Tail.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				GGTTGGAGGGGAGCCTGTGGG	0.488													10	72					0	0	0.000673444	0	0
KRT37	8688	broad.mit.edu	37	17	39580746	39580746	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39580746G>A	uc002hwp.1	-	1	77	c.30C>T	c.(28-30)TGC>TGT	p.C10C	uc002hwo.1_RNA	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	10	Head.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				AACCCAGAGGGCATGAGGAGG	0.572													11	61					0	0	0.00316338	0	0
KRT35	3886	broad.mit.edu	37	17	39635090	39635090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39635090G>A	uc002hws.2	-	4	912	c.869C>T	c.(868-870)ACC>ATC	p.T290I		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	290	Rod.|Coil 2.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				ACCTACCTGGGTGTCCAACCA	0.537													10	50					0	0	0.00136819	0	0
KRT13	3860	broad.mit.edu	37	17	39661532	39661532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:39661532C>T	uc002hwu.1	-	1	334	c.271G>A	c.(271-273)GAC>AAC	p.D91N	KRT13_uc002hwv.1_Missense_Mutation_p.D91N|KRT13_uc002hww.2_Intron|KRT13_uc010wfr.1_Intron|KRT13_uc010cxo.2_Missense_Mutation_p.D91N|KRT13_uc002hwx.1_Missense_Mutation_p.D79N	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	91	Gly-rich.|Head.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				gcaccaaagtcaacaaagcca	0.229													8	21					0	0	0.00307968	0	0
ACLY	47	broad.mit.edu	37	17	40063723	40063724	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:40063723_40063724GG>AA	uc002hyg.2	-	7	881_882	c.718_719CC>TT	c.(718-720)CCC>TTC	p.P240F	ACLY_uc002hyh.2_Missense_Mutation_p.P240F|ACLY_uc002hyi.2_Missense_Mutation_p.P294F|ACLY_uc010wfx.1_Missense_Mutation_p.P294F|ACLY_uc010wfy.1_Intron	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	240					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				CCCGAAGGGGGGAGGGAACTCG	0.579													8	70					0	0	6.4e-05	0	0
ACLY	47	broad.mit.edu	37	17	40070107	40070107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:40070107G>A	uc002hyg.2	-	2	183	c.20C>T	c.(19-21)TCA>TTA	p.S7L	ACLY_uc002hyh.2_Missense_Mutation_p.S7L|ACLY_uc002hyi.2_Missense_Mutation_p.S61L|ACLY_uc010wfx.1_Missense_Mutation_p.S61L|ACLY_uc010wfy.1_Missense_Mutation_p.S7L	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	7					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				CGTCTGCTCTGAAATTGCCTT	0.547													41	93					0	0	0.00285205	0	0
STAT3	6774	broad.mit.edu	37	17	40485735	40485735	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:40485735C>T	uc002hzl.1	-	10	1245	c.1005G>A	c.(1003-1005)CGG>CGA	p.R335R	STAT3_uc002hzk.1_Silent_p.R335R|STAT3_uc002hzm.1_Silent_p.R335R|STAT3_uc010wgh.1_Silent_p.R237R|STAT3_uc002hzn.1_Silent_p.R335R	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	335					cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		TGACGAGGGGCCGGTCAGGAT	0.567									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				9	42					0	0	0.000673444	0	0
STAT3	6774	broad.mit.edu	37	17	40500457	40500457	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:40500457G>A	uc002hzl.1	-	2	318	c.78C>T	c.(76-78)TTC>TTT	p.F26F	STAT3_uc002hzk.1_Silent_p.F26F|STAT3_uc002hzm.1_Silent_p.F26F|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Silent_p.F26F	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	26					cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		GCTCCATTGGGAAGCTGTCAC	0.498									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				39	42					0	0	0.00148497	0	0
AOC3	8639	broad.mit.edu	37	17	41004938	41004938	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:41004938C>T	uc002ibv.2	+	1	1738	c.1578C>T	c.(1576-1578)TTC>TTT	p.F526F		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	526	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	GCGCCCACTTCAAGGTGGATC	0.517													21	22					0	0	0.00278032	0	0
RUNDC1	146923	broad.mit.edu	37	17	41143109	41143109	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:41143109C>T	uc002ici.1	+	5	1230	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I	RUNDC1_uc010whi.1_Silent_p.I176I	NM_173079	NP_775102	Q96C34	RUND1_HUMAN	RUN domain containing 1	406											0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		ACCATGTCATCACCTCTGCCA	0.587													12	21					0	0	0.00244969	0	0
ETV4	2118	broad.mit.edu	37	17	41610101	41610101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:41610101C>T	uc002idw.2	-	8	880	c.752G>A	c.(751-753)AGG>AAG	p.R251K	ETV4_uc002idv.2_5'Flank|ETV4_uc010wih.1_Missense_Mutation_p.R197K|ETV4_uc010czh.2_Missense_Mutation_p.R250K|ETV4_uc010wii.1_Missense_Mutation_p.R212K|ETV4_uc002idx.2_Missense_Mutation_p.R251K|ETV4_uc010wij.1_Missense_Mutation_p.R212K	NM_001986	NP_001977	P43268	ETV4_HUMAN	ets variant gene 4 (E1A enhancer binding	251					positive regulation of transcription, DNA-dependent	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/ETV4(6)	bone(4)|soft_tissue(2)|ovary(1)	7		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0798)		CCCTGGGTACCTGTGCCCATT	0.597			T	EWSR1|TMPRSS2|DDX5|KLK2|CANT1	Ewing sarcoma|Prostate carcinoma								6	41					0	0	0.000442599	0	0
HDAC5	10014	broad.mit.edu	37	17	42156005	42156005	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:42156005G>A	uc002ifd.1	-	26	3403	c.3192C>T	c.(3190-3192)TTC>TTT	p.F1064F	HDAC5_uc002ife.1_Silent_p.F1064F|HDAC5_uc002iff.1_Silent_p.F1065F|HDAC5_uc010czp.1_Silent_p.F979F	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	1064					B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		GACCAGCGGCGAACTTCTGCA	0.657													14	124					0	0	0.00316338	0	0
FZD2	2535	broad.mit.edu	37	17	42636534	42636534	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:42636534C>T	uc002igx.1	+	1	1610	c.1478C>T	c.(1477-1479)TCG>TTG	p.S493L		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	493	Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		TGGGAGCGCTCGTGGGTGAGC	0.632													10	20					0	0	0.000673444	0	0
C17orf104	284071	broad.mit.edu	37	17	42745168	42745168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:42745168C>T	uc010czv.2	+	5	1889	c.1889C>T	c.(1888-1890)TCA>TTA	p.S630L	C17orf104_uc002igy.1_Missense_Mutation_p.S464L|C17orf104_uc002igz.3_Missense_Mutation_p.S464L|C17orf104_uc010wja.1_RNA|C17orf104_uc002iha.2_Missense_Mutation_p.S464L	NM_001145080	NP_001138552	A2RUB1	CQ104_HUMAN	hypothetical protein LOC284071	630										central_nervous_system(1)	1						GATGGCTTATCACAAAATACA	0.413													7	41					0	0	0.00198382	0	0
DBF4B	80174	broad.mit.edu	37	17	42828219	42828219	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:42828219C>T	uc002ihf.2	+	14	1659	c.1446C>T	c.(1444-1446)TCC>TCT	p.S482S	DBF4B_uc010wjc.1_Intron	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	482					cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				AAGAAAACTCCTTTGCCCCGG	0.587													5	45					0	0	0.00198382	0	0
ADAM11	4185	broad.mit.edu	37	17	42854576	42854576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:42854576G>A	uc002ihh.2	+	21	1724	c.1724G>A	c.(1723-1725)GGG>GAG	p.G575E	ADAM11_uc010wjd.1_Missense_Mutation_p.G375E|ADAM11_uc002ihi.2_5'Flank	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	575	Cys-rich.|Extracellular (Potential).				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				AATGTGGAGGGGACGGAGCGT	0.642													7	42					0	0	0.000673444	0	0
GJC1	10052	broad.mit.edu	37	17	42882669	42882669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:42882669G>A	uc002ihj.2	-	2	1028	c.517C>T	c.(517-519)CTC>TTC	p.L173F	GJC1_uc002ihk.2_Missense_Mutation_p.L173F|GJC1_uc002ihl.2_Missense_Mutation_p.L173F|GJC1_uc010czx.2_Missense_Mutation_p.L173F|GJC1_uc010czy.1_Missense_Mutation_p.L34F	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	173	Cytoplasmic (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				ATTTTCATGAGCCCATCTTCC	0.473													23	109					0	0	0.000720815	0	0
GJC1	10052	broad.mit.edu	37	17	42883130	42883130	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:42883130A>G	uc002ihj.2	-	2	567	c.56T>C	c.(55-57)TTT>TCT	p.F19S	GJC1_uc002ihk.2_Missense_Mutation_p.F19S|GJC1_uc002ihl.2_Missense_Mutation_p.F19S|GJC1_uc010czx.2_Missense_Mutation_p.F19S|GJC1_uc010czy.1_5'Flank	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	19	Cytoplasmic (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				CTTCCCCACAAATGTGGAATG	0.443													19	17					0	0	0.00188189	0	0
EFTUD2	9343	broad.mit.edu	37	17	42937815	42937815	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:42937815G>A	uc002ihn.2	-	17	1965	c.1704C>T	c.(1702-1704)CCC>CCT	p.P568P	EFTUD2_uc010wje.1_Silent_p.P533P|EFTUD2_uc010wjf.1_Silent_p.P558P	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	568						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				CATTGCCTCGGGGTTCGGTTA	0.502													12	50					0	0	0.00185496	0	0
C17orf46	124783	broad.mit.edu	37	17	43333205	43333205	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:43333205T>C	uc002iis.1	-	4	440	c.344A>G	c.(343-345)AAC>AGC	p.N115S	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Missense_Mutation_p.N94S	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	115										large_intestine(1)|ovary(1)	2						CAGCCCCATGTTGGAGTGGAC	0.552													26	112					0	0	0.00209593	0	0
ARHGAP27	201176	broad.mit.edu	37	17	43473413	43473413	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:43473413G>A	uc002iix.2	-	15	1748	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F	ARHGAP27_uc010dak.2_Silent_p.F406F	NM_199282	NP_954976	Q6ZUM4	RHG27_HUMAN	Rho GTPase activating protein 27 isoform a	774	Rho-GAP.				positive regulation of Cdc42 GTPase activity|receptor-mediated endocytosis|signal transduction	cytoplasm|membrane	Rac GTPase activator activity|SH3 domain binding				0	Renal(3;0.0405)					GCTCCCGAAAGAAGAGCTTCA	0.647													11	16					0	0	0.000978159	0	0
PLEKHM1	9842	broad.mit.edu	37	17	43555385	43555385	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:43555385G>A	uc002ija.2	-	3	347	c.177C>T	c.(175-177)ATC>ATT	p.I59I	PLEKHM1_uc010wjm.1_Intron|PLEKHM1_uc002ijb.2_5'UTR|PLEKHM1_uc010wjn.1_Intron|hsa-mir-4315-1|MI0015844_5'Flank|PLEKHM1_uc002ijd.1_Silent_p.I59I	NM_014798	NP_055613	Q9Y4G2	PKHM1_HUMAN	pleckstrin homology domain containing, family M	59	RUN.				intracellular signal transduction	cytoplasm	metal ion binding				0	Renal(3;0.0405)					GCAGGCCATGGATAAATACGG	0.592													5	19					0	0	0.00198382	0	0
STH	246744	broad.mit.edu	37	17	44076766	44076766	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:44076766C>T	uc002ijy.2	+	1	151	c.121C>T	c.(121-123)CAG>TAG	p.Q41*	MAPT_uc010dau.2_Intron|MAPT_uc002ijr.3_Intron|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_001007532	NP_001007533	Q8IWL8	STH_HUMAN	saitohin	41						cytoplasm|nucleus					0						GTGGATGATTCAGGTTGCCAG	0.358													11	47					0	0	0.00316338	0	0
MYL4	4635	broad.mit.edu	37	17	45297383	45297383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:45297383G>A	uc002ilg.2	+	4	405	c.277G>A	c.(277-279)GAG>AAG	p.E93K	MYL4_uc002ilh.2_Missense_Mutation_p.E93K	NM_001002841	NP_001002841	P12829	MYL4_HUMAN	atrial/embryonic alkali myosin light chain	93					cardiac muscle contraction|muscle filament sliding|muscle organ development|positive regulation of ATPase activity|regulation of the force of heart contraction	A band|cytosol|muscle myosin complex	actin filament binding|actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle			ovary(2)	2						TACCAATGCCGAGGTGCTGCG	0.617													6	15					0	0	0.00307968	0	0
SKAP1	8631	broad.mit.edu	37	17	46441166	46441166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:46441166C>T	uc002ini.1	-	3	275	c.163G>A	c.(163-165)GAT>AAT	p.D55N	SKAP1_uc002inj.1_Missense_Mutation_p.D55N|SKAP1_uc010dbd.1_5'UTR|SKAP1_uc010dbe.1_Missense_Mutation_p.D55N	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	55					positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						GGCTGAAAATCCCAATAGTAC	0.393													9	55					0	0	0.000978159	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47118803	47118803	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:47118803G>A	uc002iom.2	+	8	1216	c.882G>A	c.(880-882)AAG>AAA	p.K294K	IGF2BP1_uc010dbj.2_Silent_p.K155K	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	294	Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).|KH 2.			K->E: Decreases RNA-binding affinity, decreases cytoplasmic granular formation and increases nuclear localization; when associated with E-213 and E-423.	CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						TCATTGGCAAGGAAGGACGGA	0.483													6	50					0	0	0.00116845	0	0
PPP1R9B	84687	broad.mit.edu	37	17	48221007	48221007	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:48221007G>A	uc002iqh.3	-	5	1584	c.1581C>T	c.(1579-1581)TTC>TTT	p.F527F		NM_032595	NP_115984	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	525	PDZ.				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity				0						CGGTCTTGACGAAGATACCCA	0.627													7	30					0	0	0.00307968	0	0
COL1A1	1277	broad.mit.edu	37	17	48267365	48267365	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:48267365G>A	uc002iqm.2	-	36	2682	c.2556C>T	c.(2554-2556)CCC>CCT	p.P852P		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	852	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CACTCACAATGGGGCCAGGGG	0.647			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						9	40					0	0	0.000978159	0	0
LRRC59	55379	broad.mit.edu	37	17	48462559	48462559	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:48462559C>A	uc002iqt.2	-	6	750	c.596G>T	c.(595-597)CGG>CTG	p.R199L		NM_018509	NP_060979	Q96AG4	LRC59_HUMAN	leucine rich repeat containing 59	199	Potential.|Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial nucleoid	protein binding			central_nervous_system(1)	1	Breast(11;5.62e-19)		BRCA - Breast invasive adenocarcinoma(22;2.43e-08)			CTCCTTTCTCCGGCGCTCCTT	0.552													7	107					0.00307968	0.00853147	0.00307968	1	0
CACNA1G	8913	broad.mit.edu	37	17	48655906	48655906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:48655906G>A	uc002irk.1	+	9	2654	c.2282G>A	c.(2281-2283)GGC>GAC	p.G761D	CACNA1G_uc002iri.1_Missense_Mutation_p.G761D|CACNA1G_uc002irj.1_Missense_Mutation_p.G761D|CACNA1G_uc002irl.1_Missense_Mutation_p.G761D|CACNA1G_uc002irm.1_Missense_Mutation_p.G761D|CACNA1G_uc002irn.1_Missense_Mutation_p.G761D|CACNA1G_uc002iro.1_Missense_Mutation_p.G761D|CACNA1G_uc002irp.1_Missense_Mutation_p.G761D|CACNA1G_uc002irq.1_Missense_Mutation_p.G761D|CACNA1G_uc002irr.1_Missense_Mutation_p.G761D|CACNA1G_uc002irs.1_Missense_Mutation_p.G761D|CACNA1G_uc002irt.1_Missense_Mutation_p.G761D|CACNA1G_uc002irv.1_Missense_Mutation_p.G761D|CACNA1G_uc002irw.1_Missense_Mutation_p.G761D|CACNA1G_uc002iru.1_Missense_Mutation_p.G761D|CACNA1G_uc002irx.1_Missense_Mutation_p.G674D|CACNA1G_uc002iry.1_Missense_Mutation_p.G674D|CACNA1G_uc002irz.1_Missense_Mutation_p.G674D|CACNA1G_uc002isa.1_Missense_Mutation_p.G674D|CACNA1G_uc002isb.1_Missense_Mutation_p.G674D|CACNA1G_uc002isc.1_Missense_Mutation_p.G674D|CACNA1G_uc002isd.1_Missense_Mutation_p.G674D|CACNA1G_uc002ise.1_Missense_Mutation_p.G674D|CACNA1G_uc002isf.1_Missense_Mutation_p.G674D|CACNA1G_uc002isg.1_Missense_Mutation_p.G674D|CACNA1G_uc002ish.1_Missense_Mutation_p.G674D|CACNA1G_uc002isi.1_Missense_Mutation_p.G674D	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	761	Helical; Name=S1 of repeat II; (Potential).|II.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CTCAGCATGGGCATCGAATAC	0.582													9	35					0	0	0.00136819	0	0
CACNA1G	8913	broad.mit.edu	37	17	48683300	48683300	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:48683300C>T	uc002irk.1	+	23	4710	c.4338C>T	c.(4336-4338)ACC>ACT	p.T1446T	CACNA1G_uc002iri.1_Silent_p.T1446T|CACNA1G_uc002irj.1_Silent_p.T1423T|CACNA1G_uc002irl.1_Silent_p.T1423T|CACNA1G_uc002irm.1_Silent_p.T1423T|CACNA1G_uc002irn.1_Silent_p.T1423T|CACNA1G_uc002iro.1_Silent_p.T1423T|CACNA1G_uc002irp.1_Silent_p.T1446T|CACNA1G_uc002irq.1_Silent_p.T1423T|CACNA1G_uc002irr.1_Silent_p.T1446T|CACNA1G_uc002irs.1_Silent_p.T1446T|CACNA1G_uc002irt.1_Silent_p.T1446T|CACNA1G_uc002irv.1_Silent_p.T1446T|CACNA1G_uc002irw.1_Silent_p.T1423T|CACNA1G_uc002iru.1_Silent_p.T1423T|CACNA1G_uc002irx.1_Silent_p.T1359T|CACNA1G_uc002iry.1_Silent_p.T1359T|CACNA1G_uc002irz.1_Silent_p.T1359T|CACNA1G_uc002isa.1_Silent_p.T1359T|CACNA1G_uc002isb.1_Silent_p.T1359T|CACNA1G_uc002isc.1_Silent_p.T1359T|CACNA1G_uc002isd.1_Silent_p.T1359T|CACNA1G_uc002ise.1_Silent_p.T1359T|CACNA1G_uc002isf.1_Silent_p.T1359T|CACNA1G_uc002isg.1_Silent_p.T1359T|CACNA1G_uc002ish.1_Silent_p.T1359T|CACNA1G_uc002isi.1_Silent_p.T1336T|CACNA1G_uc002isj.2_Silent_p.T170T	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1446	Extracellular (Potential).|III.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GCGAGGATACCAGGAACATCA	0.547													6	36					0	0	0.00198382	0	0
ABCC3	8714	broad.mit.edu	37	17	48741436	48741436	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:48741436C>T	uc002isl.2	+	10	1382	c.1302C>T	c.(1300-1302)CCC>CCT	p.P434P	ABCC3_uc002isk.3_Silent_p.P434P|ABCC3_uc002ism.2_Missense_Mutation_p.P147S	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	434	ABC transmembrane type-1 1.|Helical; Name=8; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GGTCAGCACCCCTGCAGATCA	0.567													11	78					0	0	0.000673444	0	0
ANKRD40	91369	broad.mit.edu	37	17	48777138	48777138	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:48777138T>C	uc002iso.2	-	3	655	c.400A>G	c.(400-402)ACA>GCA	p.T134A		NM_052855	NP_443087	Q6AI12	ANR40_HUMAN	ankyrin repeat domain 40	134											0			BRCA - Breast invasive adenocarcinoma(22;2.03e-09)			GCTGTGGGTGTATAGATAAAA	0.522													11	17					0	0	0.00136819	0	0
COIL	8161	broad.mit.edu	37	17	55027862	55027862	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:55027862G>A	uc002iuu.2	-	2	772	c.741C>T	c.(739-741)TCC>TCT	p.S247S		NM_004645	NP_004636	P38432	COIL_HUMAN	coilin	247	2 X 4 AA repeats of A-R-N-S.|Ser/Thr-rich.					Cajal body|nucleolus	protein C-terminus binding			ovary(1)	1	Breast(9;6.15e-08)					CAGACTCCGAGGAGGAACTGG	0.428													61	67					0	0	0.00361006	0	0
AKAP1	8165	broad.mit.edu	37	17	55183565	55183565	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:55183565A>T	uc002iux.2	+	2	971	c.740A>T	c.(739-741)AAG>ATG	p.K247M	AKAP1_uc010wnl.1_Missense_Mutation_p.K247M|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Missense_Mutation_p.K247M	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	247					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					GATAAGGGGAAGAGCAGCTCA	0.552													18	91					0	0	0.00152264	0	0
OR4D2	124538	broad.mit.edu	37	17	56247303	56247303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:56247303G>A	uc010wnp.1	+	1	287	c.287G>A	c.(286-288)GGC>GAC	p.G96D		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TCTTACCAGGGCTGCATGGGT	0.527													12	74					0	0	0.00136819	0	0
HSF5	124535	broad.mit.edu	37	17	56557512	56557512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:56557512G>A	uc002iwi.1	-	2	791	c.667C>T	c.(667-669)CGG>TGG	p.R223W		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	223						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ACTGGGGTCCGATCTAAACCT	0.468													15	82					0	0	0.000422831	0	0
C17orf71	55181	broad.mit.edu	37	17	57288609	57288609	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:57288609C>T	uc002ixi.2	+	1	1239	c.1197C>T	c.(1195-1197)TCC>TCT	p.S399S		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	399					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					GCAGCAGTTCCAGTTCTTCAG	0.517													18	75					0	0	0.00188189	0	0
DHX40	79665	broad.mit.edu	37	17	57650551	57650551	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:57650551C>T	uc002ixn.1	+	4	648	c.501C>T	c.(499-501)TTC>TTT	p.F167F	DHX40_uc010woe.1_Silent_p.F90F|DHX40_uc002ixo.1_Silent_p.F68F	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	167	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TTACCAAATTCAGTGTCATTA	0.328													71	142					0	0	0.00361006	0	0
DHX40P1	653645	broad.mit.edu	37	17	58075540	58075540	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:58075540G>A	uc002iyf.2	-	7	538	c.303C>T	c.(301-303)TCC>TCT	p.S101S		NR_002924				Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene, mRNA (cDNA clone IMAGE:5170263).												0						AAATATTGGTGGATATGACAC	0.343													10	41					0	0	0.000673444	0	0
BCAS3	54828	broad.mit.edu	37	17	59093262	59093262	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:59093262G>T	uc002iyv.3	+	16	1746	c.1637G>T	c.(1636-1638)GGG>GTG	p.G546V	BCAS3_uc010wow.1_Missense_Mutation_p.G333V|BCAS3_uc002iyu.3_Missense_Mutation_p.G546V|BCAS3_uc002iyw.3_Missense_Mutation_p.G542V|BCAS3_uc002iyy.3_Missense_Mutation_p.G317V|BCAS3_uc002iyz.3_Missense_Mutation_p.G100V|BCAS3_uc002iza.3_Missense_Mutation_p.G100V	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	546						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			AAACGAACCGGGTAAGGCCTT	0.413													19	70					7.41877e-09	2.07755e-08	0.00188189	1	0
TLK2	11011	broad.mit.edu	37	17	60642473	60642473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:60642473G>A	uc010ddp.2	+	11	1211	c.943G>A	c.(943-945)GGT>AGT	p.G315S	TLK2_uc002izx.3_Missense_Mutation_p.G163S|TLK2_uc002izz.3_Missense_Mutation_p.G315S|TLK2_uc002jaa.3_Missense_Mutation_p.G283S|TLK2_uc010wpd.1_Missense_Mutation_p.G283S	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	315					cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						GTGGACAGATGGTTATGCTTT	0.393													46	40					0	0	0.00361006	0	0
MRC2	9902	broad.mit.edu	37	17	60741938	60741938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:60741938G>A	uc002jad.2	+	2	550	c.148G>A	c.(148-150)GGA>AGA	p.G50R	MRC2_uc002jac.2_Missense_Mutation_p.G50R	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	50	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTTCAGCCATGGACTGCAGGG	0.627													8	55					0	0	0.000274275	0	0
MRC2	9902	broad.mit.edu	37	17	60741973	60741973	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:60741973G>A	uc002jad.2	+	2	585	c.183G>A	c.(181-183)CAG>CAA	p.Q61Q	MRC2_uc002jac.2_Silent_p.Q61Q	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	61	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						AGGGCGGGCAGGTCAGAGTCA	0.622													5	36					0	0	0.000602214	0	0
MARCH10	162333	broad.mit.edu	37	17	60813389	60813389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:60813389C>T	uc010ddr.2	-	6	2078	c.1840G>A	c.(1840-1842)GAT>AAT	p.D614N	MARCH10_uc002jag.3_Missense_Mutation_p.D614N|MARCH10_uc010dds.2_Missense_Mutation_p.D652N|MARCH10_uc002jah.2_Missense_Mutation_p.D613N|uc002jaj.1_RNA|uc002jak.2_Intron	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	614							ligase activity|zinc ion binding				0						CTCCCATTATCATTTTGATTT	0.413													23	82					0	0	0.00229938	0	0
ACE	1636	broad.mit.edu	37	17	61571732	61571732	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:61571732G>A	uc002jau.1	+	22	3304	c.3282_splice	c.e22-1	p.R1094_splice	ACE_uc002jav.1_Splice_Site_p.R520_splice|ACE_uc010ddv.1_Splice_Site_p.R321_splice|ACE_uc010wpj.1_Splice_Site_p.R520_splice|ACE_uc002jaw.1_Splice_Site|ACE_uc010wpk.1_Splice_Site_p.R340_splice	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1						arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CCACTCGACAGGCTGAAGTAC	0.557													8	24					0	0	0.000442599	0	0
KCNH6	81033	broad.mit.edu	37	17	61611489	61611489	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:61611489C>T	uc002jay.2	+	5	998	c.918C>T	c.(916-918)ATC>ATT	p.I306I	KCNH6_uc002jax.1_Silent_p.I306I|KCNH6_uc010wpl.1_Silent_p.I183I|KCNH6_uc010wpm.1_Silent_p.I306I|KCNH6_uc002jaz.1_Silent_p.I306I	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	306	Helical; Name=Segment S2; (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TGGATCTCATCGTGGACATCA	0.597													18	116					0	0	0.00188189	0	0
STRADA	92335	broad.mit.edu	37	17	61790790	61790790	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:61790790G>T	uc002jbm.2	-	6	483	c.324C>A	c.(322-324)TCC>TCA	p.S108S	STRADA_uc002jbn.2_Silent_p.S50S|STRADA_uc002jbo.2_Silent_p.S71S|STRADA_uc002jbp.2_Silent_p.S71S|STRADA_uc002jbq.2_Silent_p.S50S|STRADA_uc010wpq.1_Silent_p.S64S|STRADA_uc010wpr.1_Silent_p.S79S|STRADA_uc010ddw.2_Silent_p.S79S|STRADA_uc002jbr.2_Silent_p.S50S	NM_001003787	NP_001003787	Q7RTN6	STRAA_HUMAN	STE20-related kinase adaptor alpha isoform 1	108	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|kinase binding|protein kinase activity			ovary(1)	1						CCATCTCATTGGAACAAGCTT	0.443													8	190					0.00307968	0.00853147	0.00307968	1	0
SCN4A	6329	broad.mit.edu	37	17	62036630	62036630	+	Missense_Mutation	SNP	G	A	A	rs80338785		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:62036630G>A	uc002jds.1	-	12	2091	c.2014C>T	c.(2014-2016)CGT>TGT	p.R672C		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	672	Helical; Voltage-sensor; Name=S4 of repeat II; (Potential).|II.		R -> G (in HOKPP2).|R -> S (in HOKPP2).|R -> C (in HOKPP2).|R -> H (in HOKPP2).		muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TGTACCAGACGGAAGGAGCGT	0.607													8	24					0	0	0.000673444	0	0
SMURF2	64750	broad.mit.edu	37	17	62579637	62579637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:62579637C>T	uc002jep.1	-	7	899	c.511G>A	c.(511-513)GGA>AGA	p.G171R	SMURF2_uc002jeq.1_5'UTR|SMURF2_uc002jer.1_5'UTR	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	171	WW 1.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			TGGATTCTTCCAGAGGCGGTT	0.408													5	52					0	0	0.000602214	0	0
PRKCA	5578	broad.mit.edu	37	17	64734924	64734924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:64734924C>T	uc002jfp.1	+	11	1317	c.1273C>T	c.(1273-1275)CTC>TTC	p.L425F	PRKCA_uc002jfo.1_Missense_Mutation_p.L296F	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	425	Protein kinase.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	CGGTGGGGACCTCATGTACCA	0.453													11	48					0	0	0.000673444	0	0
BPTF	2186	broad.mit.edu	37	17	65909118	65909118	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:65909118A>G	uc002jgf.2	+	11	5179	c.5118A>G	c.(5116-5118)CCA>CCG	p.P1706P	BPTF_uc002jge.2_Silent_p.P1832P	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1832					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CAGCTCTGCCATCCTATAGAA	0.398													11	61					0	0	0.00185496	0	0
ARSG	22901	broad.mit.edu	37	17	66339817	66339817	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:66339817C>T	uc002jhc.2	+	3	1087	c.291C>T	c.(289-291)GGC>GGT	p.G97G	ARSG_uc002jhb.1_5'UTR	NM_014960	NP_055775	Q96EG1	ARSG_HUMAN	Arylsulfatase G precursor	97					sulfur compound metabolic process	endoplasmic reticulum|extracellular space|lysosome	arylsulfatase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;5.34e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			GCCGGCTTGGCCTTCGCAATG	0.612													10	29					0	0	0.000442599	0	0
ABCA8	10351	broad.mit.edu	37	17	66936911	66936911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:66936911G>A	uc002jhp.2	-	3	468	c.289C>T	c.(289-291)CCC>TCC	p.P97S	ABCA8_uc002jhq.2_Missense_Mutation_p.P97S|ABCA8_uc010wqq.1_Missense_Mutation_p.P97S|ABCA8_uc010wqr.1_Missense_Mutation_p.P36S|ABCA8_uc002jhr.2_Missense_Mutation_p.P97S|ABCA8_uc002jhs.2_Missense_Mutation_p.P97S|ABCA8_uc002jht.2_Missense_Mutation_p.P97S	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	97						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GCCAGGAAGGGAGTAGAGGCT	0.373													13	39					0	0	0.00316338	0	0
ABCA8	10351	broad.mit.edu	37	17	66938079	66938079	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:66938079C>T	uc002jhp.2	-	2	275	c.96_splice	c.e2+1	p.M32_splice	ABCA8_uc002jhq.2_Splice_Site_p.M32_splice|ABCA8_uc010wqq.1_Splice_Site_p.M32_splice|ABCA8_uc010wqr.1_Intron|ABCA8_uc002jhr.2_Splice_Site_p.M32_splice|ABCA8_uc002jhs.2_Splice_Site_p.M32_splice|ABCA8_uc002jht.2_Splice_Site_p.M32_splice	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8							integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TTGAGTCATACCATTAAGGAC	0.383													12	71					0	0	0.00185496	0	0
ABCA6	23460	broad.mit.edu	37	17	67101675	67101675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:67101675C>T	uc002jhw.1	-	20	2843	c.2668G>A	c.(2668-2670)GAA>AAA	p.E890K	ABCA6_uc002jhx.1_3'UTR	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	890					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					AAATACAATTCGTTTTTAAAT	0.328													8	25					0	0	0.000274275	0	0
KCNJ2	3759	broad.mit.edu	37	17	68171507	68171507	+	Silent	SNP	C	T	T	rs140274795		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:68171507C>T	uc010dfg.2	+	2	728	c.327C>T	c.(325-327)CTC>CTT	p.L109L	KCNJ2_uc002jir.2_Silent_p.L109L	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	109	Extracellular (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					TAGCTCTGCTCCATGGGGACC	0.532													22	52					0	0	0.00332997	0	0
KIF19	124602	broad.mit.edu	37	17	72350305	72350305	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:72350305G>A	uc002jkm.3	+	18	2451	c.2313G>A	c.(2311-2313)AGG>AGA	p.R771R		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	771					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CTGCAGAGAGGAAGGAGATCC	0.607													14	64					0	0	0.000958276	0	0
GPR142	350383	broad.mit.edu	37	17	72366722	72366722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:72366722G>A	uc010wqy.1	+	3	421	c.421G>A	c.(421-423)GAA>AAA	p.E141K	GPR142_uc010wqx.1_Missense_Mutation_p.E53K	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	141	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CCAGGAGTTTGAAAGCCACTG	0.637													5	20					0	0	0.00116845	0	0
GPRC5C	55890	broad.mit.edu	37	17	72436806	72436807	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:72436806_72436807CC>TT	uc002jks.2	+	1	930_931	c.891_892CC>TT	c.(889-894)ATCCCC>ATTTCC	p.P298S	GPRC5C_uc002jkp.2_Missense_Mutation_p.P343S|GPRC5C_uc002jkq.2_Intron|GPRC5C_uc002jkr.2_Missense_Mutation_p.P310S|GPRC5C_uc002jkt.2_Missense_Mutation_p.P298S|GPRC5C_uc002jku.2_5'Flank	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	298	Helical; Name=7; (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						TCTACGTCATCCCCGAGGTCTC	0.624													12	11					0	0	6.4e-05	0	0
GRIN2C	2905	broad.mit.edu	37	17	72842259	72842259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:72842259C>T	uc002jlt.1	-	11	2452	c.2296G>A	c.(2296-2298)GAC>AAC	p.D766N	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Missense_Mutation_p.D766N	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	766	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	CAGTGGGAGTCCTTCTGCATG	0.622													17	60					0	0	0.00121646	0	0
ITGB4	3691	broad.mit.edu	37	17	73725388	73725388	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:73725388C>T	uc002jpg.2	+	7	796	c.609C>T	c.(607-609)TTC>TTT	p.F203F	ITGB4_uc002jph.2_Silent_p.F203F|ITGB4_uc010dgo.2_Silent_p.F203F|ITGB4_uc002jpi.3_Silent_p.F203F|ITGB4_uc010dgp.1_Silent_p.F203F|ITGB4_uc002jpj.2_Silent_p.F203F|ITGB4_uc010wsh.1_5'Flank	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	203	VWFA.|Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCTTCTCCTTCAAGAACGTCA	0.607													23	19					0	0	0.00127121	0	0
UNK	85451	broad.mit.edu	37	17	73808213	73808213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:73808213C>T	uc002jpm.2	+	4	563	c.563C>T	c.(562-564)ACC>ATC	p.T188I		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	112	C3H1-type 1.						nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTGCACAGAACCACAGGGGAC	0.567													5	27					0	0	0.000602214	0	0
EVPL	2125	broad.mit.edu	37	17	74005104	74005104	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:74005104G>A	uc002jqi.2	-	22	4410	c.4182C>T	c.(4180-4182)AGC>AGT	p.S1394S	EVPL_uc010wss.1_Silent_p.S1416S|EVPL_uc010wst.1_Silent_p.S864S	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1394	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCTCATCCAGGCTCCCGCTCA	0.692													30	33					0	0	0.00178596	0	0
EXOC7	23265	broad.mit.edu	37	17	74084899	74084900	+	Silent	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:74084899_74084900GG>AA	uc002jqs.2	-	10	1400_1401	c.1305_1306CC>TT	c.(1303-1308)ATCCTG>ATTTTG	p.435_436IL>IL	EXOC7_uc010dgv.1_Silent_p.331_332IL>IL|EXOC7_uc002jqq.2_Silent_p.384_385IL>IL|EXOC7_uc010wsw.1_Silent_p.407_408IL>IL|EXOC7_uc010wsx.1_Silent_p.376_377IL>IL|EXOC7_uc002jqr.2_Silent_p.353_354IL>IL|EXOC7_uc010wsv.1_Silent_p.343_344IL>IL	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	435_436					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			AGGTGTCGCAGGATGGGGAAGA	0.609													11	35					0	0	6.4e-05	0	0
QRICH2	84074	broad.mit.edu	37	17	74276755	74276755	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:74276755G>A	uc002jrd.1	-	10	4123	c.3943C>T	c.(3943-3945)CTG>TTG	p.L1315L	QRICH2_uc010wsz.1_Silent_p.L1241L|QRICH2_uc010dgw.1_Silent_p.L159L	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1315	Potential.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						TCCATCTCCAGGTGCTCCCTG	0.587													9	48					0	0	0.000442599	0	0
SEC14L1	6397	broad.mit.edu	37	17	75196570	75196570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:75196570C>T	uc002jto.2	+	9	1091	c.824C>T	c.(823-825)CCA>CTA	p.P275L	SEC14L1_uc010dhc.2_Missense_Mutation_p.P275L|SEC14L1_uc010wth.1_Missense_Mutation_p.P275L|SEC14L1_uc002jtm.2_Missense_Mutation_p.P275L|SEC14L1_uc010wti.1_Missense_Mutation_p.P241L	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	275					transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						TAATAGATTCCAAAAGATGAG	0.299													11	118					0	0	0.00185496	0	0
TNRC6C	57690	broad.mit.edu	37	17	76046630	76046630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:76046630C>T	uc002jud.2	+	4	2087	c.1487C>T	c.(1486-1488)TCC>TTC	p.S496F	TNRC6C_uc002juf.2_Missense_Mutation_p.S496F|TNRC6C_uc002jue.2_Missense_Mutation_p.S496F	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	496	Sufficient for interaction with argonaute family proteins.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			AACGATGGGTCCATCATGAAC	0.522													8	47					0	0	0.000274275	0	0
CANT1	124583	broad.mit.edu	37	17	76993341	76993341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:76993341C>T	uc002jwn.2	-	4	803	c.364G>A	c.(364-366)GAA>AAA	p.E122K	CANT1_uc002jwk.2_Missense_Mutation_p.E122K|CANT1_uc002jwj.2_Missense_Mutation_p.E122K|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	122	Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			CAGGTGTTTTCCTCTTGGGCC	0.562			T	ETV4	prostate								59	119					0	0	0.00361006	0	0
CCDC40	55036	broad.mit.edu	37	17	78058726	78058726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:78058726G>A	uc010dht.2	+	13	2201	c.2174G>A	c.(2173-2175)AGG>AAG	p.R725K	CCDC40_uc002jxm.3_Missense_Mutation_p.R508K|CCDC40_uc002jxn.3_Missense_Mutation_p.R121K	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	725	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CTGATCGAGAGGAAGCAAGGG	0.607													12	21					0	0	0.00244969	0	0
CCDC40	55036	broad.mit.edu	37	17	78069143	78069143	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:78069143A>C	uc010dht.2	+	18	2941	c.2914A>C	c.(2914-2916)ACC>CCC	p.T972P	CCDC40_uc002jxm.3_Missense_Mutation_p.T755P|CCDC40_uc002jxn.3_Missense_Mutation_p.T368P	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	972					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			AGAGACCGTCACCACCCAGGC	0.637													12	34					0	0	0.00244969	0	0
Unknown	0	broad.mit.edu	37	17	78247198	78247198	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:78247198C>T	uc002jye.1	+	3	399	c.256C>T	c.(256-258)CAA>TAA	p.Q86*	uc002jyf.2_Nonsense_Mutation_p.Q86*					Homo sapiens mRNA for KIAA1618 protein, partial cds.																		CTGGACCGTCCAAGAAGTGAG	0.632													14	16					0	0	0.00244969	0	0
BAIAP2	10458	broad.mit.edu	37	17	79058642	79058642	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:79058642C>T	uc002jzg.2	+	4	336	c.228C>T	c.(226-228)CTC>CTT	p.L76L	BAIAP2_uc002jyz.3_Silent_p.L76L|BAIAP2_uc002jza.2_Silent_p.L76L|BAIAP2_uc002jzc.2_Silent_p.L76L|BAIAP2_uc002jzb.2_5'UTR|BAIAP2_uc002jzd.2_Silent_p.L76L|BAIAP2_uc002jzf.2_Silent_p.L76L|BAIAP2_uc002jze.2_Silent_p.L109L|BAIAP2_uc010wuh.1_5'UTR|BAIAP2_uc002jzh.2_5'Flank	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2	76	IMD.				axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GAGACGTTCTCTTCCAGATGG	0.622													20	102					0	0	0.00278032	0	0
BAHCC1	57597	broad.mit.edu	37	17	79409825	79409825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:79409825C>T	uc002kaf.2	+	3	1450	c.1450C>T	c.(1450-1452)CCT>TCT	p.P484S	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	484							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CCCCGGACTCCCTAAAAGCGG	0.682													7	8					0	0	0.000442599	0	0
ACTG1	71	broad.mit.edu	37	17	79479287	79479287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:79479287G>A	uc002kaj.1	-	1	119	c.94C>T	c.(94-96)CCT>TCT	p.P32S	ACTG1_uc002kah.1_5'Flank|ACTG1_uc002kai.1_5'Flank|ACTG1_uc002kak.1_Missense_Mutation_p.P32S|ACTG1_uc010wun.1_Missense_Mutation_p.P32S|ACTG1_uc002kal.1_Missense_Mutation_p.P32S|ACTG1_uc002kag.2_RNA	NM_001614	NP_001605	P63261	ACTG_HUMAN	actin, gamma 1 propeptide	32					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			ACGATGGAAGGAAACACGGCT	0.657													21	24					0	0	0.00229938	0	0
FASN	2194	broad.mit.edu	37	17	80047516	80047517	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:80047516_80047517CC>TT	uc002kdu.2	-	12	2073_2074	c.1956_1957GG>AA	c.(1954-1959)TCGGGA>TCAAGA	p.G653R	FASN_uc002kdw.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	653	Acyl and malonyl transferases (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	ACCTGAGGTCCCGAGATGGTGA	0.678													4	5					0	0	6.4e-05	0	0
FOXK2	3607	broad.mit.edu	37	17	80540674	80540674	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr17:80540674C>T	uc002kfn.2	+	5	1138	c.967C>T	c.(967-969)CAG>TAG	p.Q323*	FOXK2_uc002kfm.1_Nonsense_Mutation_p.Q323*|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	323	Fork-head.				embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			GCCGCGTTCCCAGGAAGAACC	0.423													23	32					0	0	0.00395357	0	0
CETN1	1068	broad.mit.edu	37	18	580874	580874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:580874G>A	uc002kko.1	+	1	508	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	156	2 (Probable).|EF-hand 4.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGGGGACGGCGAAGTGAACGA	0.537													9	34					0	0	0.000442599	0	0
ADCYAP1	116	broad.mit.edu	37	18	905484	905484	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:905484T>C	uc010dkg.2	+	2	216	c.97T>C	c.(97-99)TTC>CTC	p.F33L	ADCYAP1_uc010dkh.2_Missense_Mutation_p.F33L	NM_001099733	NP_001093203	P18509	PACA_HUMAN	adenylate cyclase activating polypeptide	33					activation of adenylate cyclase activity|cell-cell signaling|female pregnancy|nerve growth factor receptor signaling pathway|regulation of G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|peptide hormone receptor binding				0						CGGACTCCGGTTCCCCGGGAT	0.632													5	15					0	0	0.000602214	0	0
EMILIN2	84034	broad.mit.edu	37	18	2885025	2885025	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:2885025G>A	uc002kln.2	+	3	480	c.321G>A	c.(319-321)TGG>TGA	p.W107*		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	107	EMI.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		AGTTGGAATGGAGGTGCTGTC	0.537													16	56					0	0	0.00074312	0	0
EPB41L3	23136	broad.mit.edu	37	18	5423386	5423386	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:5423386A>G	uc002kmt.1	-	11	1416	c.1330T>C	c.(1330-1332)TTG>CTG	p.L444L	EPB41L3_uc010wzh.1_Silent_p.L444L|EPB41L3_uc002kmu.1_Silent_p.L444L|EPB41L3_uc010dkq.1_Silent_p.L335L|EPB41L3_uc010dkr.2_Silent_p.L5L	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	444	Hydrophilic.				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						CCTCCATCCAAGCTGCGAGAC	0.468													7	27					0	0	0.000274275	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6213171	6213171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:6213171C>T	uc002kmz.3	-	12	1118	c.958G>A	c.(958-960)GAT>AAT	p.D320N	L3MBTL4_uc010dkt.2_Missense_Mutation_p.D320N|L3MBTL4_uc002kmy.3_Missense_Mutation_p.D158N	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	320	MBT 3.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				TCATCAACATCTACAATCGTA	0.323													6	55					0	0	0.00198382	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6912135	6912135	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:6912135A>G	uc010wzi.1	+	17	1879	c.1641A>G	c.(1639-1641)AAA>AAG	p.K547K	ARHGAP28_uc002kne.2_Silent_p.K565K			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	547					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				GGGTGATTAAACCCCAACAAA	0.358													3	31					0	0	0.000602214	0	0
LAMA1	284217	broad.mit.edu	37	18	6999489	6999489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:6999489C>T	uc002knm.2	-	32	4712	c.4618G>A	c.(4618-4620)GAT>AAT	p.D1540N	LAMA1_uc010wzj.1_Missense_Mutation_p.D1016N	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1540	Laminin EGF-like 17.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCACACTCATCGCACCGGAGC	0.542													9	28					0	0	0.000673444	0	0
LRRC30	339291	broad.mit.edu	37	18	7231711	7231711	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:7231711A>C	uc010wzk.1	+	1	575	c.575A>C	c.(574-576)CAC>CCC	p.H192P		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	192	LRR 6.									ovary(1)|liver(1)	2						ATTTTCTTGCACGTGGGCTCG	0.542													21	63					0	0	0.00188189	0	0
RALBP1	10928	broad.mit.edu	37	18	9533713	9533713	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:9533713C>T	uc002kob.2	+	9	1813	c.1590C>T	c.(1588-1590)CAC>CAT	p.H530H	RALBP1_uc002koc.2_Silent_p.H530H	NM_006788	NP_006779	Q15311	RBP1_HUMAN	ralA binding protein 1	530					chemotaxis|positive regulation of Cdc42 GTPase activity|small GTPase mediated signal transduction|transport	cytosol|membrane	ATPase activity, coupled to movement of substances|Rac GTPase activator activity|Rac GTPase binding|Ral GTPase binding			central_nervous_system(1)	1						GCCAGCAGCACGGCCGAAGTG	0.512													30	36					0	0	0.00209593	0	0
RNMT	8731	broad.mit.edu	37	18	13752422	13752422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:13752422C>T	uc002ksk.1	+	9	1422	c.1355C>T	c.(1354-1356)CCT>CTT	p.P452L	RNMT_uc002ksl.1_Missense_Mutation_p.P452L|RNMT_uc002ksm.1_Missense_Mutation_p.P452L|RNMT_uc010dlk.2_Missense_Mutation_p.P452L|RNMT_uc010xae.1_RNA	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	452					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						GTAAGGTTACCTTTGGTAAGT	0.328													5	39					0	0	0.00116845	0	0
MC2R	4158	broad.mit.edu	37	18	13884913	13884913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:13884913G>A	uc002ksp.1	-	2	782	c.605C>T	c.(604-606)TCC>TTC	p.S202F		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	202	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	CCTGGTGTGGGATCGAGCCAG	0.572													16	13					0	0	0.000566183	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478132	14478132	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:14478132G>A	uc010xai.1	-	3		c.1432C>T				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						AAAAGGAAAGGAACACGGAAA	0.393													14	7					0	0	0.00244969	0	0
POTEC	388468	broad.mit.edu	37	18	14537808	14537808	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:14537808T>C	uc010dln.2	-	3	1256	c.802A>G	c.(802-804)AAA>GAA	p.K268E	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	268										skin(3)	3						ACCTTGTTTTTTGATTCAATA	0.363													5	52					0	0	0.00198382	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14851614	14851614	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:14851614A>C	uc010dlo.2	+	36	3494	c.3314A>C	c.(3313-3315)CAC>CCC	p.H1105P	ANKRD30B_uc010xal.1_Missense_Mutation_p.H247P	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	1190	Potential.									ovary(1)|skin(1)	2						AAACATCAACACCAGGTGAAG	0.338													9	25					0	0	0.000274275	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995711	19995711	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:19995711G>A	uc002ktv.1	-	1	2168	c.2064C>T	c.(2062-2064)TTC>TTT	p.F688F		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	688	Pro-rich.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GAGGTGGGGGGAAAGGAGGTC	0.507													16	85					0	0	0.00074312	0	0
CTAGE1	64693	broad.mit.edu	37	18	19996547	19996547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:19996547C>T	uc002ktv.1	-	1	1332	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	410	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TTCTCAAATTCTTTAAGATCT	0.388													31	213					0	0	0.0024448	0	0
RIOK3	8780	broad.mit.edu	37	18	21044193	21044193	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:21044193C>T	uc002kui.3	+	4	966	c.349C>T	c.(349-351)CGA>TGA	p.R117*	RIOK3_uc010dls.2_Nonsense_Mutation_p.R117*|RIOK3_uc010xas.1_Nonsense_Mutation_p.R101*|RIOK3_uc010xat.1_5'Flank	NM_003831	NP_003822	O14730	RIOK3_HUMAN	sudD suppressor of bimD6 homolog	117					chromosome segregation		ATP binding|protein binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(21;0.000106)|all_epithelial(16;6.74e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TGAAAATTATCGAAAAGTGCA	0.383													10	60					0	0	0.000978159	0	0
LAMA3	3909	broad.mit.edu	37	18	21357535	21357535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:21357535C>T	uc002kuq.2	+	11	1506	c.1420C>T	c.(1420-1422)CCT>TCT	p.P474S	LAMA3_uc010dlv.1_Missense_Mutation_p.P474S|LAMA3_uc002kur.2_Missense_Mutation_p.P474S	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	474	Domain V.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCCATTTTTCCTGTTTCTAC	0.279													69	36					0	0	0.00361006	0	0
LAMA3	3909	broad.mit.edu	37	18	21396436	21396436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:21396436G>A	uc002kuq.2	+	18	2218	c.2132G>A	c.(2131-2133)GGA>GAA	p.G711E	LAMA3_uc002kur.2_Missense_Mutation_p.G711E	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	711	Domain V.|Laminin EGF-like 8.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CATGTCGTGGGAAAGGTGTGC	0.567													5	23					0	0	0.00307968	0	0
LAMA3	3909	broad.mit.edu	37	18	21495344	21495344	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:21495344A>T	uc002kuq.2	+	59	7822	c.7736A>T	c.(7735-7737)AAA>ATA	p.K2579I	LAMA3_uc002kur.2_Missense_Mutation_p.K2523I|LAMA3_uc002kus.3_Missense_Mutation_p.K970I|LAMA3_uc002kut.3_Missense_Mutation_p.K914I	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2579	Laminin G-like 1.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AACTTCAAAAAAACATTCAAT	0.368													13	90					0	0	0.00244969	0	0
LAMA3	3909	broad.mit.edu	37	18	21526172	21526172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:21526172G>A	uc002kuq.2	+	70	9361	c.9275G>A	c.(9274-9276)GGA>GAA	p.G3092E	LAMA3_uc002kur.2_Missense_Mutation_p.G3036E|LAMA3_uc002kus.3_Missense_Mutation_p.G1483E|LAMA3_uc002kut.3_Missense_Mutation_p.G1427E	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3092	Laminin G-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCCCGGGAGGGAAGTTTGCCT	0.493													9	77					0	0	0.000673444	0	0
TTC39C	125488	broad.mit.edu	37	18	21649137	21649137	+	Missense_Mutation	SNP	C	T	T	rs146129310		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:21649137C>T	uc002kuw.2	+	4	814	c.362C>T	c.(361-363)TCC>TTC	p.S121F	TTC39C_uc002kuu.2_Missense_Mutation_p.S60F	NM_001135993	NP_001129465	Q8N584	TT39C_HUMAN	tetratricopeptide repeat domain 39C isoform 1	121							binding			ovary(1)	1						GTCCGAAAATCCGCCCCCTCT	0.438													12	76					0	0	0.00244969	0	0
PSMA8	143471	broad.mit.edu	37	18	23713987	23713987	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:23713987C>T	uc002kvq.2	+	1	172	c.58C>T	c.(58-60)CAA>TAA	p.Q20*	PSMA8_uc002kvo.2_Nonsense_Mutation_p.Q20*|PSMA8_uc002kvp.2_Nonsense_Mutation_p.Q20*|PSMA8_uc002kvr.2_5'UTR	NM_144662	NP_653263	Q8TAA3	PSA7L_HUMAN	proteasome alpha 8 subunit isoform 1	20					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	threonine-type endopeptidase activity			skin(1)	1	all_cancers(21;0.000585)|Lung NSC(5;0.00148)|all_lung(6;0.0038)|Ovarian(20;0.124)		OV - Ovarian serous cystadenocarcinoma(3;0.000324)|all cancers(3;0.000954)|LUSC - Lung squamous cell carcinoma(2;0.181)			ACACCTTTTTCAAGTTGAATA	0.557													28	40					0	0	0.000814825	0	0
CDH2	1000	broad.mit.edu	37	18	25585831	25585831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:25585831G>A	uc002kwg.2	-	6	1288	c.829C>T	c.(829-831)CCT>TCT	p.P277S	CDH2_uc010xbn.1_Missense_Mutation_p.P246S	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	277	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						GATCCCTCAGGAACTGTCCCA	0.398													60	31					0	0	0.00361006	0	0
DSC3	1825	broad.mit.edu	37	18	28609486	28609486	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:28609486A>T	uc002kwj.3	-	4	618	c.463T>A	c.(463-465)TTT>ATT	p.F155I	DSC3_uc002kwi.3_Missense_Mutation_p.F155I	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	155	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TGTTGAAGAAACAATGGGAAA	0.398													11	64					0	0	0.000673444	0	0
DSC1	1823	broad.mit.edu	37	18	28739459	28739460	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:28739459_28739460CT>TA	uc002kwn.2	-	2	358_359	c.96_97AG>TA	c.(94-99)AAAGTT>AATATT	p.32_33KV>NI	DSC1_uc002kwm.2_Missense_Mutation_p.32_33KV>NI	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	32_33					homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CGAAGATAAACTTTCTGACAAG	0.317													73	53					0	0	6.4e-05	0	0
DSG1	1828	broad.mit.edu	37	18	28918397	28918397	+	Missense_Mutation	SNP	G	A	A	rs148956893		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:28918397G>A	uc002kwp.2	+	10	1597	c.1385G>A	c.(1384-1386)GGA>GAA	p.G462E		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	462	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding	p.G462E(1)		skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AAATACCAAGGAACGATTCTC	0.328													10	76					0	0	0.00244969	0	0
DSG1	1828	broad.mit.edu	37	18	28926100	28926100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:28926100C>T	uc002kwp.2	+	14	2251	c.2039C>T	c.(2038-2040)TCT>TTT	p.S680F	DSG1_uc010xbp.1_Missense_Mutation_p.S39F	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	680	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AGAAGAAATTCTATGAGGGAA	0.418													22	42					0	0	0.000720815	0	0
DSG3	1830	broad.mit.edu	37	18	29049253	29049253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:29049253C>T	uc002kws.2	+	12	1947	c.1838C>T	c.(1837-1839)TCA>TTA	p.S613L		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	613	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGGCCGCACTCAGGGAGGCTG	0.592													13	53					0	0	0.00136819	0	0
DSG3	1830	broad.mit.edu	37	18	29054139	29054139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:29054139G>A	uc002kws.2	+	15	2266	c.2157G>A	c.(2155-2157)ATG>ATA	p.M719I	DSG3_uc002kwt.2_Missense_Mutation_p.M1I	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	719	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CTTCAGGAATGGAAATGACCA	0.478													16	46					0	0	0.00121646	0	0
MCART2	147407	broad.mit.edu	37	18	29339985	29339985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:29339985C>T	uc002kxa.2	-	1	859	c.640G>A	c.(640-642)GAT>AAT	p.D214N		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	214	Solcar 3.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			CCGATAAAATCATTGACCAAA	0.453													23	100					0	0	0.00332997	0	0
C18orf34	374864	broad.mit.edu	37	18	30936296	30936296	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:30936296A>T	uc002kxn.2	-	6	505	c.363T>A	c.(361-363)TTT>TTA	p.F121L	C18orf34_uc010xbr.1_Missense_Mutation_p.F121L|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.F121L|C18orf34_uc002kxp.2_Missense_Mutation_p.F121L	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	121										ovary(1)	1						ACCATTCTTCAAAAGAAGTTT	0.234													5	8					0	0	0.00116845	0	0
NOL4	8715	broad.mit.edu	37	18	31537309	31537309	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:31537309T>G	uc010dmi.2	-	8	1638	c.1409A>C	c.(1408-1410)AAA>ACA	p.K470T	NOL4_uc010xbs.1_Missense_Mutation_p.K185T|NOL4_uc002kxr.3_Intron|NOL4_uc010xbt.1_Missense_Mutation_p.K396T|NOL4_uc010dmh.2_Intron|NOL4_uc010xbu.1_Intron|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Intron	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	470						nucleolus	RNA binding			ovary(3)	3						ACCACTTCTTTTCATCCGCCT	0.418													16	58					0	0	0.000958276	0	0
INO80C	125476	broad.mit.edu	37	18	33060428	33060428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:33060428G>A	uc002kyy.3	-	2	373	c.256C>T	c.(256-258)CCC>TCC	p.P86S	INO80C_uc002kyw.1_Missense_Mutation_p.P86S|INO80C_uc002kyx.3_Missense_Mutation_p.P31S|INO80C_uc010dmt.2_Missense_Mutation_p.P122S	NM_194281	NP_919257	Q6PI98	IN80C_HUMAN	Ies6-similar protein isoform 2	86					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex|MLL1 complex					0						ACAAAGTTGGGATCCTTAAAT	0.488													19	58					0	0	0.00152264	0	0
RPRD1A	55197	broad.mit.edu	37	18	33606972	33606972	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:33606972T>A	uc002kzf.1	-	6	686	c.680A>T	c.(679-681)AAT>ATT	p.N227I	RPRD1A_uc002kze.1_Missense_Mutation_p.N191I|RPRD1A_uc002kzg.2_Missense_Mutation_p.N227I|RPRD1A_uc010dmw.2_Missense_Mutation_p.N191I|RPRD1A_uc010dmx.2_Missense_Mutation_p.N227I	NM_018170	NP_060640	Q96P16	RPR1A_HUMAN	regulation of nuclear pre-mRNA domain containing	227										ovary(1)|breast(1)	2						CAATCTGCCATTGTAATCTGC	0.393													22	71					0	0	0.00188189	0	0
SLC39A6	25800	broad.mit.edu	37	18	33706700	33706700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:33706700G>A	uc010dmy.2	-	2	561	c.271C>T	c.(271-273)CAT>TAT	p.H91Y	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	91	His-rich.|Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						tggtgTATATGGATTCTTTTA	0.159													9	32					0	0	0.000274275	0	0
FHOD3	80206	broad.mit.edu	37	18	34335185	34335185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:34335185C>T	uc002kzt.1	+	21	3857	c.3760C>T	c.(3760-3762)CGC>TGC	p.R1254C	FHOD3_uc002kzs.1_Missense_Mutation_p.R1271C|FHOD3_uc010dmz.1_Missense_Mutation_p.R986C|FHOD3_uc010dnb.1_Missense_Mutation_p.R250C	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	1254	FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				ACTAGAGTATCGCACAACCAG	0.433													9	26					0	0	0.000274275	0	0
CELF4	56853	broad.mit.edu	37	18	35145400	35145400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:35145400C>T	uc002lae.2	-	1	601	c.205G>A	c.(205-207)GAC>AAC	p.D69N	CELF4_uc010dnd.1_Missense_Mutation_p.D69N|CELF4_uc002lag.2_Missense_Mutation_p.D69N|CELF4_uc002laf.2_Missense_Mutation_p.D65N|CELF4_uc002lai.2_Missense_Mutation_p.D65N	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	69	RRM 1.|Sufficient for RNA-binding and MSE- dependent splicing activity.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						GGCTTGAGGTCCTTCTCATCC	0.542													6	31					0	0	0.00116845	0	0
RIT2	6014	broad.mit.edu	37	18	40323638	40323638	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:40323638A>C	uc002lav.2	-	5	647	c.474T>G	c.(472-474)GGT>GGG	p.G158G	RIT2_uc010dnf.2_3'UTR	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	158					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						TCTCAAAAAAACCACAATTAT	0.383													3	23					0	0	0.00024832	0	0
SLC14A2	8170	broad.mit.edu	37	18	43204771	43204771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:43204771G>A	uc010dnj.2	+	3	463	c.142G>A	c.(142-144)GAA>AAA	p.E48K	SLC14A2_uc002lbb.2_Missense_Mutation_p.E48K|SLC14A2_uc002lbe.2_Missense_Mutation_p.E48K	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	48						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GGAAATGCCTGAAGAAAAGGT	0.562													8	39					0	0	0.000274275	0	0
SLC14A2	8170	broad.mit.edu	37	18	43249278	43249278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:43249278C>T	uc010dnj.2	+	17	2365	c.2044C>T	c.(2044-2046)CTC>TTC	p.L682F	SLC14A2_uc002lbe.2_Missense_Mutation_p.L682F	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	682	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CAGCCCCATCCTCTCCAGTGC	0.572													7	66					0	0	0.00307968	0	0
TCEB3C	162699	broad.mit.edu	37	18	44554652	44554652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:44554652C>T	uc010xdb.1	-	1	1798	c.1562G>A	c.(1561-1563)CGA>CAA	p.R521Q	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	521					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						AGCCTGTTTTCGGGTTTTGTc	0.353													12	177					0	0	0.00121646	0	0
LIPG	9388	broad.mit.edu	37	18	47108779	47108779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:47108779G>A	uc002ldv.2	+	7	1336	c.1084G>A	c.(1084-1086)GGA>AGA	p.G362R	LIPG_uc010xdh.1_Missense_Mutation_p.G288R	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	362	PLAT.				cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						CAAGAACATGGGAGAAATTGA	0.443													11	38					0	0	0.000978159	0	0
MYO5B	4645	broad.mit.edu	37	18	47488716	47488716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:47488716C>T	uc002leb.2	-	12	1753	c.1465G>A	c.(1465-1467)GAT>AAT	p.D489N	MYO5B_uc002lec.1_Missense_Mutation_p.D488N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	489	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCATAAAAATCAATCAGGGTC	0.418													10	50					0	0	0.000673444	0	0
CCDC11	220136	broad.mit.edu	37	18	47777208	47777208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:47777208C>T	uc002lee.2	-	5	1007	c.916G>A	c.(916-918)GAA>AAA	p.E306K		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	306	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		AAGTCCTGTTCGTCTCTGTAT	0.408													46	247					0	0	0.00361006	0	0
MRO	83876	broad.mit.edu	37	18	48327874	48327874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:48327874C>T	uc002lew.3	-	6	724	c.430G>A	c.(430-432)GAG>AAG	p.E144K	MRO_uc010xdn.1_Intron|MRO_uc010dpa.2_Missense_Mutation_p.E158K|MRO_uc010dpb.2_Intron|MRO_uc010dpc.2_Intron|MRO_uc002lex.3_Missense_Mutation_p.E144K	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	144	HEAT.					nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		CTGTCGTTCTCCTGCGGTCCC	0.463													20	142					0	0	0.00332997	0	0
DCC	1630	broad.mit.edu	37	18	50936960	50936960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:50936960G>A	uc002lfe.1	+	20	3661	c.3074G>A	c.(3073-3075)CGA>CAA	p.R1025Q	DCC_uc010xdr.1_Missense_Mutation_p.R853Q|DCC_uc010dpf.1_Missense_Mutation_p.R660Q	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1025	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ATTCAAGCACGAAATTCAAAA	0.383													8	40					0	0	0.000978159	0	0
DCC	1630	broad.mit.edu	37	18	50985602	50985602	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:50985602G>A	uc002lfe.1	+	24	3980	c.3393G>A	c.(3391-3393)AAG>AAA	p.K1131K	DCC_uc010dpf.1_Silent_p.K766K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1131	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGTTCCATAGGAAACGGGCCA	0.443													24	14					0	0	0.000878237	0	0
STARD6	147323	broad.mit.edu	37	18	51858172	51858172	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:51858172G>A	uc010xdt.1	-	4	325	c.325C>T	c.(325-327)CGA>TGA	p.R109*		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	109	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		ATAAAGTCTCGAGGGGAAATG	0.378													19	66					0	0	0.00121646	0	0
STARD6	147323	broad.mit.edu	37	18	51863622	51863622	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:51863622C>T	uc010xdt.1	-	3	141	c.141_splice	c.e3-1	p.L47_splice		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6						lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		AACACGATATCTACAGTTAAC	0.318													5	61					0	0	0.000602214	0	0
NARS	4677	broad.mit.edu	37	18	55269716	55269716	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:55269716G>A	uc002lgs.2	-	13	1614	c.1386C>T	c.(1384-1386)GTC>GTT	p.V462V	NARS_uc002lgt.2_Silent_p.V461V|NARS_uc010xea.1_Silent_p.V213V	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	462					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	TCAACACGTCGACCTTTAAAT	0.398													20	11					0	0	0.00152264	0	0
ATP8B1	5205	broad.mit.edu	37	18	55328481	55328481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:55328481C>T	uc002lgw.2	-	21	2632	c.2632G>A	c.(2632-2634)GAC>AAC	p.D878N	uc002lgu.1_Intron|uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	878	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				TTCACCAGGTCCACCACCATG	0.567									Byler_disease				6	32					0	0	0.00198382	0	0
ATP8B1	5205	broad.mit.edu	37	18	55352331	55352331	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:55352331G>A	uc002lgw.2	-	13	1446	c.1446C>T	c.(1444-1446)GCC>GCT	p.A482A	uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	482	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity	p.A482V(1)		breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				TGTGTTGAGAGGCATCCCGAT	0.388									Byler_disease				12	60					0	0	0.00316338	0	0
ALPK2	115701	broad.mit.edu	37	18	56203325	56203325	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:56203325C>G	uc002lhj.3	-	5	4308	c.4094G>C	c.(4093-4095)GGG>GCG	p.G1365A	ALPK2_uc002lhk.1_Missense_Mutation_p.G696A	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1365							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						ATTTTCCTTCCCTCCAGTTTC	0.453													16	59					0	0	0.000566183	0	0
ALPK2	115701	broad.mit.edu	37	18	56205126	56205126	+	Missense_Mutation	SNP	G	A	A	rs115584025	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:56205126G>A	uc002lhj.3	-	5	2507	c.2293C>T	c.(2293-2295)CGT>TGT	p.R765C	ALPK2_uc002lhk.1_Missense_Mutation_p.R96C	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	765							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						AAGTCAGCACGAGCATCCTTG	0.517													42	13					0	0	0.00222228	0	0
ALPK2	115701	broad.mit.edu	37	18	56246441	56246441	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:56246441T>C	uc002lhj.3	-	4	1781	c.1567A>G	c.(1567-1569)AAG>GAG	p.K523E		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	523							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CATAAGTCCTTTCCCCCCACT	0.522											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	216					0	0	0.00116845	0	0
MALT1	10892	broad.mit.edu	37	18	56401549	56401549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:56401549G>A	uc002lhm.1	+	12	1669	c.1411G>A	c.(1411-1413)GAT>AAT	p.D471N	MALT1_uc002lhn.1_Missense_Mutation_p.D460N	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma	471	Caspase-like.				activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						AAATGACTACGATGATACCAT	0.358			T	BIRC3	MALT								48	22					0	0	0.00361006	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60237405	60237405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:60237405C>T	uc002lip.3	+	12	1916	c.1916C>T	c.(1915-1917)CCA>CTA	p.P639L	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.P109L	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	639					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						TACAGTTCTCCATCTAGTCCC	0.398													23	12					0	0	0.00395357	0	0
SERPINB12	89777	broad.mit.edu	37	18	61233861	61233861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:61233861G>A	uc010xen.1	+	7	835	c.835G>A	c.(835-837)GAA>AAA	p.E279K	SERPINB12_uc010xeo.1_Missense_Mutation_p.E299K	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	279					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						AATCACCTATGAAAAAATGGT	0.448													108	53					0	0	0.00361006	0	0
SERPINB4	6318	broad.mit.edu	37	18	61306990	61306990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:61306990G>A	uc002ljf.2	-	6	576	c.490C>T	c.(490-492)CCT>TCT	p.P164S	SERPINB4_uc002lje.2_Missense_Mutation_p.P164S|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	164					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						GTCCCATCAGGAAATAGGTTT	0.358													10	35					0	0	0.000978159	0	0
SERPINB11	89778	broad.mit.edu	37	18	61383355	61383355	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:61383355G>A	uc002ljk.3	+	6	506	c.444G>A	c.(442-444)ACG>ACA	p.T148T	SERPINB11_uc010xes.1_Intron|SERPINB11_uc010dqd.2_Silent_p.T34T|SERPINB11_uc002ljj.3_Silent_p.T34T|SERPINB11_uc010dqe.2_Intron|SERPINB11_uc010dqf.2_Intron	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	148					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				CGAGGAAAACGATTAATGCTT	0.368													8	27					0	0	0.000978159	0	0
DSEL	92126	broad.mit.edu	37	18	65178404	65178404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:65178404G>A	uc002lke.1	-	2	4696	c.3472C>T	c.(3472-3474)CCT>TCT	p.P1158S		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	1148						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				GGAGACAAAGGAATTCCAAGA	0.373													5	43					0	0	0.00116845	0	0
DSEL	92126	broad.mit.edu	37	18	65179113	65179113	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:65179113G>A	uc002lke.1	-	2	3987	c.2763C>T	c.(2761-2763)ATC>ATT	p.I921I		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	911						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				GCCCACTGCGGATATCTGACA	0.433													53	30					0	0	0.00361006	0	0
CCDC102B	79839	broad.mit.edu	37	18	66504355	66504355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:66504355G>A	uc002lkk.2	+	4	578	c.355G>A	c.(355-357)GAA>AAA	p.E119K	CCDC102B_uc002lki.2_Missense_Mutation_p.E119K|CCDC102B_uc002lkj.1_Missense_Mutation_p.E119K	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	119	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				TGCCAGGGAGGAAGGAAGACA	0.463													13	31					0	0	0.00185496	0	0
CCDC102B	79839	broad.mit.edu	37	18	66564615	66564615	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:66564615C>T	uc002lkk.2	+	8	1436	c.1213C>T	c.(1213-1215)CAA>TAA	p.Q405*	CCDC102B_uc002lki.2_Nonsense_Mutation_p.Q405*|CCDC102B_uc002lkj.1_Nonsense_Mutation_p.Q405*	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	405	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				TGCAAACTCTCAAAGTCCTGA	0.393													23	118					0	0	0.000720815	0	0
CD226	10666	broad.mit.edu	37	18	67563141	67563141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:67563141G>A	uc010dqo.2	-	3	970	c.523C>T	c.(523-525)CTC>TTC	p.L175F	CD226_uc002lkm.3_Missense_Mutation_p.L175F	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	175	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				TAAGTTAAGAGGTCGATCTGA	0.517													11	46					0	0	0.00185496	0	0
FBXO15	201456	broad.mit.edu	37	18	71740773	71740773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:71740773C>T	uc002lle.2	-	10	1564	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K	FBXO15_uc002lld.2_RNA|FBXO15_uc002llf.2_Missense_Mutation_p.E486K	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	410										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		AGGTATTCTTCGGTCTCTCTG	0.453													30	140					0	0	0.000953801	0	0
ZNF407	55628	broad.mit.edu	37	18	72589276	72589276	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:72589276C>T	uc002llw.2	+	4	5058	c.5001C>T	c.(4999-5001)TTC>TTT	p.F1667F	ZNF407_uc010dqu.1_Silent_p.F1667F	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1667	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		ATTACTCATTCCTCACAGCCT	0.547													10	54					0	0	0.00244969	0	0
ZNF407	55628	broad.mit.edu	37	18	72632573	72632573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:72632573C>T	uc002llw.2	+	7	5410	c.5353C>T	c.(5353-5355)CCG>TCG	p.P1785S	ZNF407_uc010dqu.1_Missense_Mutation_p.P1785S	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1785	C2H2-type 22.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GACCAACGTCCCGGTGGAGTT	0.483													8	15					0	0	0.00307968	0	0
ATP9B	374868	broad.mit.edu	37	18	77013536	77013536	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:77013536C>A	uc002lmx.2	+	12	1277	c.1263C>A	c.(1261-1263)CCC>CCA	p.P421P	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Silent_p.P421P|ATP9B_uc002lmy.1_RNA|ATP9B_uc002lmz.1_Silent_p.P115P	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	421	Helical; (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		ACATCATTCCCATAAGGTAAG	0.328													8	126					1.12685e-05	3.14474e-05	0.000274275	1	0
NFATC1	4772	broad.mit.edu	37	18	77170516	77170517	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:77170516_77170517CC>TT	uc010xfg.1	+	2	694_695	c.241_242CC>TT	c.(241-243)CCG>TTG	p.P81L	NFATC1_uc002lnc.1_Missense_Mutation_p.P81L|NFATC1_uc010xff.1_Missense_Mutation_p.P81L|NFATC1_uc002lnd.2_Missense_Mutation_p.P81L|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.P81L|NFATC1_uc010xfi.1_Missense_Mutation_p.P68L|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.P68L|NFATC1_uc002lng.2_Missense_Mutation_p.P68L|NFATC1_uc010xfk.1_Missense_Mutation_p.P68L	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	81					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GGGCATCATCCCGCCGGCGGAT	0.718													8	31					0	0	6.4e-05	0	0
C19orf21	126353	broad.mit.edu	37	19	763503	763503	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:763503C>T	uc002lpo.2	+	5	2036	c.1953C>T	c.(1951-1953)GTC>GTT	p.V651V		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	651										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTTTGCAGGTCCTGGAAGCCA	0.572													7	4					0	0	0.00198382	0	0
WDR18	57418	broad.mit.edu	37	19	989777	989777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:989777C>T	uc002lqm.1	+	3	363	c.337C>T	c.(337-339)CTT>TTT	p.L113F	WDR18_uc002lqn.1_RNA|WDR18_uc010drx.1_Missense_Mutation_p.L76F|WDR18_uc010dry.1_Missense_Mutation_p.L113F	NM_024100	NP_077005	Q9BV38	WDR18_HUMAN	WD repeat domain 18	113	WD 2.									skin(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACCGGGAACCTTCTGGTCAT	0.627													12	35					0	0	0.00316338	0	0
SBNO2	22904	broad.mit.edu	37	19	1127726	1127726	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:1127726G>A	uc002lrk.3	-	5	556	c.318C>T	c.(316-318)ATC>ATT	p.I106I	SBNO2_uc002lrj.3_Silent_p.I49I|SBNO2_uc010dse.2_Silent_p.I99I|SBNO2_uc010xgj.1_Silent_p.I49I|SBNO2_uc010dsf.2_Silent_p.I49I	NM_014963	NP_055778	Q9Y2G9	SBNO2_HUMAN	strawberry notch homolog 2 isoform 1	106					macrophage activation involved in immune response|negative regulation of transcription, DNA-dependent|regulation of inflammatory response|transcription, DNA-dependent						0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGAGGAGAAGATGGAGATGT	0.607													9	25					0	0	0.000442599	0	0
NDUFS7	374291	broad.mit.edu	37	19	1390905	1390905	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:1390905C>G	uc002lse.3	+	5	307	c.264C>G	c.(262-264)TGC>TGG	p.C88W	NDUFS7_uc002lsf.2_Missense_Mutation_p.C152W|NDUFS7_uc002lsh.2_Missense_Mutation_p.C152W|NDUFS7_uc002lsg.2_Missense_Mutation_p.C95W	NM_024407	NP_077718	O75251	NDUS7_HUMAN	NADH-ubiquinone oxidoreductase Fe-S protein 7	88		Iron-sulfur (4Fe-4S) (Potential).			mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|metal ion binding|NADH dehydrogenase (ubiquinone) activity|protein binding|quinone binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)|Breast(49;0.00186)|Lung NSC(49;0.00292)|all_lung(49;0.00419)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	NADH(DB00157)	GCCTGGCCTGCTGCGCCGTGG	0.697													3	19					0	0	0.00024832	0	0
AP3D1	8943	broad.mit.edu	37	19	2115325	2115325	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:2115325C>G	uc002luz.2	-	20	2465	c.2242G>C	c.(2242-2244)GAG>CAG	p.E748Q	AP3D1_uc002luy.2_Missense_Mutation_p.E657Q|AP3D1_uc002lva.2_Missense_Mutation_p.E748Q	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	748	Potential.				eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ttctccttctccttcctcttt	0.517													11	27					0	0	0.000978159	0	0
DOT1L	84444	broad.mit.edu	37	19	2185856	2185857	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:2185856_2185857GG>TT	uc002lvb.3	+	3	164_165	c.128_129GG>TT	c.(127-129)TGG>TTT	p.W43F		NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	43						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGTTTCAGATGGGTCTGTGAAG	0.342													11	423					0	0	6.4e-05	0	0
JSRP1	126306	broad.mit.edu	37	19	2255218	2255218	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:2255218C>T	uc002lvi.1	-	1	131	c.96G>A	c.(94-96)GAG>GAA	p.E32E	JSRP1_uc002lvj.1_Silent_p.E32E	NM_144616	NP_653217	Q96MG2	JSPR1_HUMAN	junctional sarcoplasmic reticulum protein 1	32	Mediates interaction with CACNA1S (By similarity).					sarcoplasmic reticulum membrane				pancreas(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGCCCTGTCCTCCTGGGTCT	0.642													11	28					0	0	0.000978159	0	0
ZNF556	80032	broad.mit.edu	37	19	2876090	2876090	+	Splice_Site	SNP	G	A	A	rs144545156	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:2876090G>A	uc002lwp.1	+	3	218	c.131_splice	c.e3-1	p.D44_splice	ZNF556_uc002lwq.2_Splice_Site_p.D44_splice	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTTTGTTTCAGATAATGAGGC	0.338													40	209					0	0	0.00361006	0	0
ZNF556	80032	broad.mit.edu	37	19	2877835	2877835	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:2877835G>A	uc002lwp.1	+	4	966	c.879G>A	c.(877-879)GGG>GGA	p.G293G	ZNF556_uc002lwq.2_Silent_p.G292G	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	293	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCAGTGTGGGAAAGCCTACT	0.512													11	19					0	0	0.000673444	0	0
ZNF556	80032	broad.mit.edu	37	19	2878022	2878022	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:2878022C>G	uc002lwp.1	+	4	1153	c.1066C>G	c.(1066-1068)CGC>GGC	p.R356G	ZNF556_uc002lwq.2_Missense_Mutation_p.R355G	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	356					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCGAGGCCTCGCCCCTCCAC	0.483													12	13					0	0	0.00136819	0	0
ZNF57	126295	broad.mit.edu	37	19	2916093	2916093	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:2916093A>C	uc002lwr.2	+	3	296	c.148A>C	c.(148-150)AAA>CAA	p.K50Q	ZNF57_uc010xha.1_Missense_Mutation_p.K18Q	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	50	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		GACTCAATTTAAAGCCAATGG	0.378													8	54					0	0	0.000978159	0	0
TLE6	79816	broad.mit.edu	37	19	2987234	2987234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:2987234G>A	uc002lwu.2	+	6	570	c.170G>A	c.(169-171)AGA>AAA	p.R57K	TLE6_uc002lwt.2_Missense_Mutation_p.R180K|TLE6_uc010dtg.2_Missense_Mutation_p.R180K|TLE6_uc002lwv.2_5'Flank	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	57					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCAGAGACAGACGTGAGTGT	0.607													12	36					0	0	0.00136819	0	0
GIPC3	126326	broad.mit.edu	37	19	3586562	3586562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:3586562G>A	uc002lyd.3	+	2	322	c.295G>A	c.(295-297)GAG>AAG	p.E99K		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	99										breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		GATAGGCCTGGAGGACTTCAT	0.577											OREG0025154	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	49					0	0	0.00244969	0	0
TJP3	27134	broad.mit.edu	37	19	3735609	3735609	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:3735609C>T	uc010xhv.1	+	8	1131	c.1131C>T	c.(1129-1131)ACC>ACT	p.T377T	TJP3_uc010xhs.1_Silent_p.T344T|TJP3_uc010xht.1_Silent_p.T308T|TJP3_uc010xhu.1_Silent_p.T353T|TJP3_uc010xhw.1_Silent_p.T363T	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	358						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		ATTCCAGAACCATCTCGGAAC	0.567													33	38					0	0	0.000814825	0	0
PLIN5	440503	broad.mit.edu	37	19	4523637	4523637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:4523637C>T	uc002mas.2	-	8	1348	c.1295G>A	c.(1294-1296)GGG>GAG	p.G432E		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	432						lipid particle					0						CATCCTGTCCCCATCCCCATT	0.692											OREG0025168	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	52					0	0	0.00316338	0	0
C3	718	broad.mit.edu	37	19	6682022	6682022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:6682022C>T	uc002mfm.2	-	35	4342	c.4280G>A	c.(4279-4281)AGA>AAA	p.R1427K	C3_uc002mfl.2_Missense_Mutation_p.R163K	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1427	Properdin-binding.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GGAGATGTATCTGTCAACACC	0.552													17	55					0	0	0.00152264	0	0
TRIP10	9322	broad.mit.edu	37	19	6750016	6750016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:6750016C>T	uc002mfs.2	+	12	1400	c.1334C>T	c.(1333-1335)CCC>CTC	p.P445L	TRIP10_uc010dux.1_Missense_Mutation_p.P389L|TRIP10_uc002mfr.2_Missense_Mutation_p.P389L|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_Missense_Mutation_p.P208L	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	445	Interaction with CDC42.|Interaction with PDE6G (By similarity).|REM.				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						AGCTTGGAGCCCCAGATCGCT	0.552													12	49					0	0	0.00244969	0	0
SH2D3A	10045	broad.mit.edu	37	19	6754925	6754926	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:6754925_6754926GG>AA	uc002mft.2	-	5	1091_1092	c.897_898CC>TT	c.(895-900)CCCCAA>CCTTAA	p.Q300*	SH2D3A_uc010xjg.1_Nonsense_Mutation_p.Q178*	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	300					JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						TGCAGGACTTGGGGTTCCAGGG	0.599													16	57					0	0	6.4e-05	0	0
INSR	3643	broad.mit.edu	37	19	7141739	7141739	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:7141739G>T	uc002mgd.1	-	13	2740	c.2631C>A	c.(2629-2631)CCC>CCA	p.P877P	INSR_uc002mge.1_Silent_p.P865P	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	877	Fibronectin type-III 3.|Extracellular (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCAGACCATTGGGCTCCTTCG	0.493													13	273					0.00121646	0.00338231	0.00121646	1	0
INSR	3643	broad.mit.edu	37	19	7267804	7267804	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:7267804C>T	uc002mgd.1	-	2	313	c.204G>A	c.(202-204)ACG>ACA	p.T68T	INSR_uc002mge.1_Silent_p.T68T|INSR_uc002mgf.2_Silent_p.T68T	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	68					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTTCGGGCCTCGTTTTGAACA	0.507													53	232					0	0	0.00361006	0	0
PNPLA6	10908	broad.mit.edu	37	19	7601355	7601355	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:7601355C>G	uc010xjq.1	+	5	558	c.363C>G	c.(361-363)TCC>TCG	p.S121S	PNPLA6_uc002mgq.1_Silent_p.S73S|PNPLA6_uc010xjp.1_Silent_p.S73S|PNPLA6_uc002mgr.1_Silent_p.S73S|PNPLA6_uc002mgs.2_Silent_p.S112S	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	112	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CCACCTCCTCCCTCGTGGATA	0.552													5	33					0	0	0.00116845	0	0
XAB2	56949	broad.mit.edu	37	19	7689244	7689244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:7689244C>T	uc002mgx.2	-	7	936	c.910G>A	c.(910-912)GAG>AAG	p.E304K		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	304	HAT 8.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						ATCATGCTCTCCTCGAACTGG	0.652								Direct_reversal_of_damage|NER					7	39					0	0	0.00307968	0	0
STXBP2	6813	broad.mit.edu	37	19	7706927	7706927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:7706927G>A	uc002mha.3	+	8	631	c.586G>A	c.(586-588)GAG>AAG	p.E196K	STXBP2_uc002mhb.3_Missense_Mutation_p.E193K|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Missense_Mutation_p.E207K|STXBP2_uc010dvk.2_Missense_Mutation_p.E164K|STXBP2_uc002mhc.3_5'UTR|STXBP2_uc002mhe.1_5'Flank	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	196					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						CAGGGGCCCAGAGGACACAGC	0.667													16	61					0	0	0.00229938	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830542	7830542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:7830542C>T	uc002mih.2	+	4	351	c.233C>T	c.(232-234)TCC>TTC	p.S78F	CLEC4M_uc010xjv.1_Missense_Mutation_p.S50F|CLEC4M_uc002mhy.2_Missense_Mutation_p.S22F|CLEC4M_uc010xjw.1_Missense_Mutation_p.S57F|CLEC4M_uc010dvt.2_Missense_Mutation_p.S78F|CLEC4M_uc010dvs.2_Missense_Mutation_p.S77F|CLEC4M_uc010xjx.1_Missense_Mutation_p.S50F|CLEC4M_uc002mhz.2_Missense_Mutation_p.S78F|CLEC4M_uc002mic.2_Missense_Mutation_p.S50F|CLEC4M_uc002mia.2_Missense_Mutation_p.S57F	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	78	Extracellular (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						GTCCCCAGCTCCCTAAGTCAG	0.363													15	54					0	0	0.00074312	0	0
FBN3	84467	broad.mit.edu	37	19	8174176	8174176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:8174176G>A	uc002mjf.2	-	35	4574	c.4553C>T	c.(4552-4554)TCC>TTC	p.S1518F		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1518	TB 6.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCAACAGCAGGAAGCTCGGGT	0.622													13	13					0	0	0.00244969	0	0
FBN3	84467	broad.mit.edu	37	19	8175830	8175831	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:8175830_8175831CC>TT	uc002mjf.2	-	33	4252_4253	c.4231_4232GG>AA	c.(4231-4233)GGG>AAG	p.G1411K		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1411	EGF-like 22; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACAGAGGTTCCCTTGCGCACAC	0.634													12	37					0	0	6.4e-05	0	0
FBN3	84467	broad.mit.edu	37	19	8183802	8183802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:8183802C>T	uc002mjf.2	-	25	3337	c.3316G>A	c.(3316-3318)GCC>ACC	p.A1106T		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1106	EGF-like 14; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GTGCCCTTGGCCGTCAGCTCA	0.597													4	28					0	0	0.00024832	0	0
MYO1F	4542	broad.mit.edu	37	19	8609209	8609209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:8609209C>T	uc002mkg.2	-	14	1610	c.1496G>A	c.(1495-1497)GGC>GAC	p.G499D		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	499	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GATGACGAAGCCGGCGCTCCA	0.687													11	36					0	0	0.00185496	0	0
MYO1F	4542	broad.mit.edu	37	19	8616642	8616642	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:8616642G>A	uc002mkg.2	-	8	867	c.753C>T	c.(751-753)AGC>AGT	p.S251S	MYO1F_uc002mkh.2_Silent_p.S251S|MYO1F_uc010xkf.1_3'UTR	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	251	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CACCAAAGTCGCTTCTGTCGT	0.577													7	31					0	0	0.00198382	0	0
ACTL9	284382	broad.mit.edu	37	19	8807960	8807960	+	Silent	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:8807960G>C	uc002mkl.2	-	1	1213	c.1092C>G	c.(1090-1092)GCC>GCG	p.A364A		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	364						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CGTGGGTCTCGGCTGGCAGAG	0.677													5	27					0	0	0.000602214	0	0
MUC16	94025	broad.mit.edu	37	19	8994501	8994501	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:8994501G>A	uc002mkp.2	-	64	41595	c.41391C>T	c.(41389-41391)TTC>TTT	p.F13797F	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.F614F|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13799	Extracellular (Potential).|SEA 12.|ANK 1.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGTGATGGTGAAGTTGAGGG	0.483													7	48					0	0	0.00198382	0	0
MUC16	94025	broad.mit.edu	37	19	9011397	9011397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9011397C>T	uc002mkp.2	-	36	39040	c.38836G>A	c.(38836-38838)GAG>AAG	p.E12946K	MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12948	SEA 6.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGCTCAGCTCCCAGTACAGC	0.562													7	57					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9020785	9020785	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9020785G>A	uc002mkp.2	-	20	37521	c.37317C>T	c.(37315-37317)GGC>GGT	p.G12439G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12441	Extracellular (Potential).|SEA 3.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAGTCTGCAGCCAGAGTACA	0.542													7	24					0	0	0.00307968	0	0
MUC16	94025	broad.mit.edu	37	19	9046028	9046028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9046028G>A	uc002mkp.2	-	5	35807	c.35603C>T	c.(35602-35604)TCC>TTC	p.S11868F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11870	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAAACCAAGGGAAAGAGTTGA	0.502													8	65					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9049298	9049298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9049298G>A	uc002mkp.2	-	5	32537	c.32333C>T	c.(32332-32334)TCG>TTG	p.S10778L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10780	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAATGGCCGAACTTGTCTG	0.473													8	45					0	0	0.000442599	0	0
MUC16	94025	broad.mit.edu	37	19	9049400	9049400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9049400G>A	uc002mkp.2	-	5	32435	c.32231C>T	c.(32230-32232)TCT>TTT	p.S10744F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10746	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTGTCCCAGAACTAGTGAC	0.468													5	76					0	0	0.000602214	0	0
MUC16	94025	broad.mit.edu	37	19	9049903	9049903	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9049903C>T	uc002mkp.2	-	5	31932	c.31728G>A	c.(31726-31728)GGG>GGA	p.G10576G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10578	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTCTCTGCCCCAGAACGAG	0.502													6	34					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	9059043	9059043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9059043G>A	uc002mkp.2	-	3	28607	c.28403C>T	c.(28402-28404)ACC>ATC	p.T9468I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9470	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATGATAGAGGTGAAAAGAGA	0.483													11	44					0	0	0.00136819	0	0
MUC16	94025	broad.mit.edu	37	19	9062188	9062188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9062188C>T	uc002mkp.2	-	3	25462	c.25258G>A	c.(25258-25260)GAG>AAG	p.E8420K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8422	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGCTGGTCTCCCTCAATCCA	0.517													14	14					0	0	0.00185496	0	0
MUC16	94025	broad.mit.edu	37	19	9063016	9063016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9063016C>T	uc002mkp.2	-	3	24634	c.24430G>A	c.(24430-24432)GGA>AGA	p.G8144R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8146	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGGCACTCCAGAAAGGACA	0.537													11	25					0	0	0.000978159	0	0
MUC16	94025	broad.mit.edu	37	19	9063714	9063714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9063714G>A	uc002mkp.2	-	3	23936	c.23732C>T	c.(23731-23733)CCT>CTT	p.P7911L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7913	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCCCCTAAAGGACTTGTATG	0.448													4	53					0	0	0.000602214	0	0
MUC16	94025	broad.mit.edu	37	19	9066494	9066494	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9066494G>A	uc002mkp.2	-	3	21156	c.20952C>T	c.(20950-20952)TCC>TCT	p.S6984S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6986	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTCTGTCCTGGAGACCTCAG	0.483													6	45					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	9070251	9070251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9070251G>A	uc002mkp.2	-	3	17399	c.17195C>T	c.(17194-17196)TCA>TTA	p.S5732L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5734	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAAGATTGTGATTCATGTCC	0.488													6	14					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9072091	9072091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9072091G>A	uc002mkp.2	-	3	15559	c.15355C>T	c.(15355-15357)CCT>TCT	p.P5119S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5121	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTATAGAAGGAAAAATTTCC	0.453													10	40					0	0	0.000673444	0	0
MUC16	94025	broad.mit.edu	37	19	9075747	9075747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9075747G>A	uc002mkp.2	-	3	11903	c.11699C>T	c.(11698-11700)TCC>TTC	p.S3900F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3901	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TACACTGGAGGAGCTGGTAAC	0.458													7	18					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9085838	9085838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9085838C>T	uc002mkp.2	-	1	6181	c.5977G>A	c.(5977-5979)GAA>AAA	p.E1993K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1993	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAACTTTTTCTGAAGAAACT	0.473													10	38					0	0	0.000442599	0	0
MUC16	94025	broad.mit.edu	37	19	9085999	9085999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9085999G>A	uc002mkp.2	-	1	6020	c.5816C>T	c.(5815-5817)TCA>TTA	p.S1939L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1939	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAATGGATGAAAAAGGCAA	0.488													4	15					0	0	0.000602214	0	0
MUC16	94025	broad.mit.edu	37	19	9088160	9088160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9088160G>A	uc002mkp.2	-	1	3859	c.3655C>T	c.(3655-3657)CCC>TCC	p.P1219S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1219	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTCCAAGGGAACCAGGGTG	0.502													23	115					0	0	0.00332997	0	0
MUC16	94025	broad.mit.edu	37	19	9091122	9091122	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9091122C>T	uc002mkp.2	-	1	897	c.693G>A	c.(691-693)GGG>GGA	p.G231G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	231	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATAAAGTGTCCCAAATGATG	0.458													28	31					0	0	0.00127121	0	0
OR7G3	390883	broad.mit.edu	37	19	9237048	9237048	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9237048G>A	uc010xkl.1	-	1	579	c.579C>T	c.(577-579)CTC>CTT	p.L193L		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTTATTGATGAGGACATCAG	0.453													31	35					0	0	0.0024448	0	0
OR7D2	162998	broad.mit.edu	37	19	9296777	9296777	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9296777T>A	uc002mkz.1	+	1	508	c.320T>A	c.(319-321)TTT>TAT	p.F107Y		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	107	Helical; Name=3; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TCCATGTTTTTTCCTATTCTG	0.512													20	69					0	0	0.00152264	0	0
OR7E24	26648	broad.mit.edu	37	19	9362185	9362185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:9362185C>T	uc002mlb.1	+	1	466	c.466C>T	c.(466-468)CCA>TCA	p.P156S		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	156	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CATCATGAACCCACGCCTCTG	0.453													5	35					0	0	0.00198382	0	0
COL5A3	50509	broad.mit.edu	37	19	10077065	10077065	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:10077065C>T	uc002mmq.1	-	64	4793	c.4707G>A	c.(4705-4707)CGG>CGA	p.R1569R		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1569	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TGAACGAGTCCCGCGCGCAGC	0.617													5	15					0	0	0.00198382	0	0
C3P1	388503	broad.mit.edu	37	19	10157492	10157492	+	RNA	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:10157492T>C	uc010dwx.1	+	9		c.1326T>C				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						CTGGAGGAAGTTCACTCTGCC	0.532													9	38					0	0	0.000274275	0	0
C3P1	388503	broad.mit.edu	37	19	10169621	10169621	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:10169621G>A	uc010dwx.1	+	18		c.2256G>A				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						CGACTGCCTGGACAGCTTTGC	0.522													11	47					0	0	0.00136819	0	0
EIF3G	8666	broad.mit.edu	37	19	10229351	10229351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:10229351C>T	uc002mnd.2	-	5	357	c.293G>A	c.(292-294)AGG>AAG	p.R98K	EIF3G_uc010dxa.2_Missense_Mutation_p.R98K	NM_003755	NP_003746	O75821	EIF3G_HUMAN	eukaryotic translation initiation factor 3,	98						cytosol|eukaryotic translation initiation factor 3 complex|nucleus|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0			OV - Ovarian serous cystadenocarcinoma(20;3.53e-09)|Epithelial(33;4.91e-06)|all cancers(31;1.1e-05)			CACCTTCCTCCTTGCGACAGC	0.527													15	52					0	0	0.000566183	0	0
SMARCA4	6597	broad.mit.edu	37	19	11152195	11152195	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:11152195G>C	uc002mqf.3	+	30	4667	c.4383G>C	c.(4381-4383)AAG>AAC	p.K1461N	SMARCA4_uc010dxp.2_Missense_Mutation_p.K1461N|SMARCA4_uc010dxo.2_Missense_Mutation_p.K1493N|SMARCA4_uc010dxq.2_Missense_Mutation_p.K1428N|SMARCA4_uc010dxr.2_Missense_Mutation_p.K1428N|SMARCA4_uc002mqj.3_Missense_Mutation_p.K1431N|SMARCA4_uc010dxs.2_Missense_Mutation_p.K1431N|SMARCA4_uc002mqh.3_Missense_Mutation_p.K551N	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1461					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				TCACCAAGAAGATGAAGAAGA	0.637			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				8	11					0	0	0.000442599	0	0
DOCK6	57572	broad.mit.edu	37	19	11348916	11348916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:11348916G>A	uc002mqs.3	-	15	1749	c.1708C>T	c.(1708-1710)CTT>TTT	p.L570F	DOCK6_uc010xlq.1_5'Flank|LOC55908_uc010dxw.2_Intron|LOC55908_uc010dxx.2_Missense_Mutation_p.R33K	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	570	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CGCACAGCAAGGTTGCGCACG	0.667													6	17					0	0	0.00116845	0	0
ZNF823	55552	broad.mit.edu	37	19	11833312	11833312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:11833312G>A	uc002msm.2	-	4	1163	c.1037C>T	c.(1036-1038)TCA>TTA	p.S346L	ZNF823_uc010xmd.1_Missense_Mutation_p.S164L|ZNF823_uc010dyi.1_Missense_Mutation_p.S302L	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	346	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATTTCGAACTGAACTAGGACA	0.413										HNSCC(68;0.2)			18	48					0	0	0.000566183	0	0
ZNF625	90589	broad.mit.edu	37	19	12256823	12256823	+	Silent	SNP	T	C	C	rs34016739		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:12256823T>C	uc002mth.2	-	4	560	c.210A>G	c.(208-210)AAA>AAG	p.K70K	ZNF20_uc002mtg.1_Intron|ZNF625_uc010dyn.1_RNA|ZNF625_uc010dyo.1_Silent_p.K104K	NM_145233	NP_660276	Q96I27	ZN625_HUMAN	zinc finger protein 625	70	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTATGTACATTTATATGGCT	0.458													10	47					0	0	0.000442599	0	0
ZNF563	147837	broad.mit.edu	37	19	12433461	12433461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:12433461G>A	uc002mtp.2	-	2	306	c.68C>T	c.(67-69)CCA>CTA	p.P23L	ZNF563_uc002mtq.2_Missense_Mutation_p.P23L	NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	23	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTCTGTGATGGACCCAGCAA	0.438													36	42					0	0	0.00111076	0	0
ZNF442	79973	broad.mit.edu	37	19	12461221	12461221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:12461221C>T	uc002mtr.1	-	6	1789	c.1178G>A	c.(1177-1179)CGA>CAA	p.R393Q	ZNF442_uc010xmk.1_Missense_Mutation_p.R324Q	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	393	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						CATATGACTTCGAAAGCTTGA	0.428													16	111					0	0	0.00074312	0	0
ZNF709	163051	broad.mit.edu	37	19	12574931	12574931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:12574931G>A	uc002mtv.3	-	4	1966	c.1805C>T	c.(1804-1806)TCC>TTC	p.S602F	ZNF709_uc002mtw.3_Missense_Mutation_p.S570F|ZNF709_uc002mtx.3_Missense_Mutation_p.S602F	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	602	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATTCGAAAGGAACGTGAGCA	0.423													26	87					0	0	0.00106085	0	0
CACNA1A	773	broad.mit.edu	37	19	13566004	13566004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:13566004C>T	uc010dze.2	-	2	552	c.316G>A	c.(316-318)GCC>ACC	p.A106T	CACNA1A_uc002mwy.3_Missense_Mutation_p.A106T	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	106	Helical; Name=S1 of repeat I; (Potential).|I.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	ATGATGGTGGCTAAAATCATA	0.478													19	88					0	0	0.00152264	0	0
MRI1	84245	broad.mit.edu	37	19	13883066	13883066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:13883066G>A	uc002mxe.2	+	6	1147	c.1081G>A	c.(1081-1083)GAT>AAT	p.D361N	MRI1_uc002mxf.2_Missense_Mutation_p.D314N|C19orf53_uc002mxg.2_5'Flank	NM_001031727	NP_001026897	Q9BV20	MTNA_HUMAN	translation initiation factor eIF-2B subunit	361					L-methionine salvage from methylthioadenosine	cell projection|cytoplasm|nucleus	identical protein binding|S-methyl-5-thioribose-1-phosphate isomerase activity			ovary(1)	1						CTCTTCCAGGGATGGAACCCT	0.542													6	12					0	0	0.00307968	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13915869	13915869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:13915869C>T	uc002mxh.1	+	3	808	c.619C>T	c.(619-621)CTC>TTC	p.L207F	ZSWIM4_uc010xng.1_Missense_Mutation_p.L13F	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	207							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			CGTGCAGTACCTCATCAGCGC	0.612											OREG0025298	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	19					0	0	0.000602214	0	0
EMR3	84658	broad.mit.edu	37	19	14749089	14749089	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:14749089G>A	uc002mzi.3	-	11	1460	c.1312C>T	c.(1312-1314)CTG>TTG	p.L438L	EMR3_uc010dzp.2_Silent_p.L386L|EMR3_uc010xnv.1_Silent_p.L312L	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	438	Cytoplasmic (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						CCCTCCAGCAGCATCCAGGTG	0.557													5	20					0	0	0.000602214	0	0
EMR2	30817	broad.mit.edu	37	19	14877890	14877890	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:14877890G>A	uc002mzp.1	-	6	843	c.387C>T	c.(385-387)CTC>CTT	p.L129L	EMR2_uc010dzs.1_5'Flank|EMR2_uc010xnw.1_Silent_p.L129L|EMR2_uc002mzo.1_Silent_p.L129L|EMR2_uc002mzq.1_Silent_p.L129L|EMR2_uc002mzr.1_Silent_p.L129L|EMR2_uc002mzs.1_Intron|EMR2_uc002mzt.1_Intron|EMR2_uc002mzu.1_Intron|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	129	Extracellular (Potential).|EGF-like 3; calcium-binding.				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						AGCTTTTACAGAGCCTTGGGT	0.587													9	62					0	0	0.000442599	0	0
OR7A17	26333	broad.mit.edu	37	19	14991789	14991789	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:14991789A>C	uc010xob.1	-	1	379	c.379T>G	c.(379-381)TGT>GGT	p.C127G		NM_030901	NP_112163	O14581	OR7AH_HUMAN	olfactory receptor, family 7, subfamily A,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					AGAGGATGACAGATGGCCACA	0.502													8	31					0	0	0.00307968	0	0
WIZ	58525	broad.mit.edu	37	19	15547765	15547765	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:15547765G>A	uc002nbb.3	-	3	595	c.381C>T	c.(379-381)ACC>ACT	p.T127T		NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nucleus	zinc ion binding				0						CAGCAGCAGAGGTGGCCAGCA	0.682													9	44					0	0	0.00136819	0	0
OR10H3	26532	broad.mit.edu	37	19	15852289	15852289	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:15852289C>T	uc010xoq.1	+	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTCTTGTTCCTGCTGTACC	0.493													19	103					0	0	0.00188189	0	0
CYP4F11	57834	broad.mit.edu	37	19	16038278	16038278	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:16038278T>C	uc002nbu.2	-	4	395	c.359A>G	c.(358-360)AAG>AGG	p.K120R	CYP4F11_uc010eab.1_Missense_Mutation_p.K120R|CYP4F11_uc002nbt.2_Missense_Mutation_p.K120R	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	120					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AATCATATCCTTGGGTGCGAC	0.542													14	83					0	0	0.000566183	0	0
OR10H4	126541	broad.mit.edu	37	19	16059904	16059904	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:16059904C>T	uc010xov.1	+	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCATCTTGTTCCTGCTGTACC	0.483													17	74					0	0	0.000958276	0	0
NWD1	284434	broad.mit.edu	37	19	16918718	16918718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:16918718G>A	uc002neu.3	+	18	4480	c.4058G>A	c.(4057-4059)AGC>AAC	p.S1353N	NWD1_uc002net.3_Missense_Mutation_p.S1218N|NWD1_uc002nev.3_Missense_Mutation_p.S1147N			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1353							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						ACCCTCTCCAGCGTGGCCATT	0.572													13	61					0	0	0.000566183	0	0
CPAMD8	27151	broad.mit.edu	37	19	17104366	17104366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:17104366C>T	uc002nfb.2	-	12	1299	c.1267G>A	c.(1267-1269)GCT>ACT	p.A423T		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	376						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						ACCCCCTCAGCTGGGCTGCCA	0.393													4	20					0	0	0.00116845	0	0
MYO9B	4650	broad.mit.edu	37	19	17213280	17213280	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:17213280C>T	uc010eak.2	+	2	905	c.753C>T	c.(751-753)TTC>TTT	p.F251F	MYO9B_uc002nfi.2_Silent_p.F251F|MYO9B_uc002nfj.1_Silent_p.F251F	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	251	Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						GCACCAACTTCCTCATCCACT	0.647													6	11					0	0	0.00198382	0	0
GTPBP3	84705	broad.mit.edu	37	19	17450299	17450299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:17450299G>A	uc010eas.2	+	7	930	c.865G>A	c.(865-867)GAG>AAG	p.E289K	GTPBP3_uc010xpo.1_Missense_Mutation_p.E311K|GTPBP3_uc010ear.1_RNA|GTPBP3_uc002ngh.3_Missense_Mutation_p.E289K|GTPBP3_uc002ngg.3_Missense_Mutation_p.E321K|GTPBP3_uc002ngi.3_5'UTR	NM_032620	NP_116009	Q969Y2	GTPB3_HUMAN	GTP binding protein 3 (mitochondrial) isoform V	289					tRNA modification	mitochondrion	GTP binding|GTPase activity			skin(1)	1						TGACGTGCTGGAGACCCCAGT	0.692													5	22					0	0	0.00198382	0	0
FCHO1	23149	broad.mit.edu	37	19	17889664	17889664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:17889664C>T	uc010ebb.2	+	19	1787	c.1598C>T	c.(1597-1599)CCC>CTC	p.P533L	FCHO1_uc002nhg.3_Missense_Mutation_p.P533L|FCHO1_uc002nhh.2_Missense_Mutation_p.P533L|FCHO1_uc010xpw.1_Missense_Mutation_p.P483L|FCHO1_uc002nhi.2_5'UTR|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	533	Pro-rich.									breast(1)	1						TCTCCAGGCCCCTGGGGGCTG	0.667													5	10					0	0	0.00198382	0	0
CRLF1	9244	broad.mit.edu	37	19	18709599	18709599	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:18709599G>A	uc010ebt.1	-	3	704	c.510C>T	c.(508-510)TCC>TCT	p.S170S		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	170	Fibronectin type-III 1.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						TGTACTTGAGGGAGTAGTTGG	0.607													7	24					0	0	0.00307968	0	0
DDX49	54555	broad.mit.edu	37	19	19032556	19032557	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:19032556_19032557GG>AA	uc002nkq.1	+	3	381_382	c.324_325GG>AA	c.(322-327)ATGGAC>ATAAAC	p.108_109MD>IN	COPE_uc002nkk.2_5'Flank|COPE_uc002nkl.2_5'Flank|COPE_uc002nkm.2_5'Flank|COPE_uc002nkn.2_5'Flank|HOMER3_uc002nko.1_Intron|HOMER3_uc002nkp.1_Intron|DDX49_uc002nkr.1_RNA|DDX49_uc002nks.1_Missense_Mutation_p.1_2MD>IN|DDX49_uc002nkt.1_5'UTR	NM_019070	NP_061943	Q9Y6V7	DDX49_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	108_109	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			Epithelial(12;0.0289)			TCGGTGGCATGGGTACGGGAGC	0.644													7	22					0	0	6.4e-05	0	0
CILP2	148113	broad.mit.edu	37	19	19655346	19655346	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:19655346G>A	uc002nmv.3	+	8	2077	c.1992G>A	c.(1990-1992)CGG>CGA	p.R664R	CILP2_uc002nmw.3_Silent_p.R670R	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	664						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TGGCCGTGCGGGTGGCCGCCA	0.711													4	12					0	0	0.00024832	0	0
CILP2	148113	broad.mit.edu	37	19	19655943	19655943	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:19655943C>T	uc002nmv.3	+	8	2674	c.2589C>T	c.(2587-2589)CTC>CTT	p.L863L	CILP2_uc002nmw.3_Silent_p.L869L	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	863						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GCATCAACCTCGCCAAGCCCA	0.697													4	10					0	0	0.000602214	0	0
GMIP	51291	broad.mit.edu	37	19	19745506	19745506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:19745506C>T	uc002nnd.2	-	18	2011	c.1894G>A	c.(1894-1896)GAG>AAG	p.E632K	GMIP_uc010xrb.1_Missense_Mutation_p.E606K|GMIP_uc010xrc.1_Missense_Mutation_p.E603K	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	632	Rho-GAP.				negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						ATCACGGGCTCGGTGAGCTGG	0.672													13	70					0	0	0.00244969	0	0
GMIP	51291	broad.mit.edu	37	19	19746466	19746466	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:19746466C>T	uc002nnd.2	-	14	1509	c.1392G>A	c.(1390-1392)GAG>GAA	p.E464E	GMIP_uc010xrb.1_Intron|GMIP_uc010xrc.1_Intron	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	464					negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						GGTCTCGCTCCTCAAAGTCAT	0.512													16	67					0	0	0.00074312	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766382	19766382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:19766382G>A	uc002nnh.3	-	10	1379	c.1351C>T	c.(1351-1353)CTC>TTC	p.L451F	ATP13A1_uc002nnf.3_5'Flank|ATP13A1_uc002nng.2_Missense_Mutation_p.L333F	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	451	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						AACACCAGGAGGAAGAGGATG	0.592													6	14					0	0	0.00116845	0	0
ZNF253	56242	broad.mit.edu	37	19	20002943	20002943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:20002943C>T	uc002noj.2	+	4	979	c.887C>T	c.(886-888)CCC>CTC	p.P296L	ZNF253_uc002nok.2_Missense_Mutation_p.P220L|ZNF253_uc002nol.2_RNA	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	296	C2H2-type 5.			Missing (in Ref. 1; AAC26844).|Missing (in Ref. 2; BAC11185).	negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTAAGCACCCCTCACACGTT	0.408													4	17					0	0	0.00024832	0	0
LOC284441	284441	broad.mit.edu	37	19	20369753	20369753	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:20369753C>T	uc002nov.2	+	1	1297	c.546C>T	c.(544-546)ACC>ACT	p.T182T		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						CCTTAGAAACCACAGTATTAG	0.398													5	44					0	0	0.00116845	0	0
ZNF493	284443	broad.mit.edu	37	19	21605951	21605951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:21605951C>T	uc002npx.2	+	2	386	c.106C>T	c.(106-108)CAT>TAT	p.H36Y	ZNF493_uc002npw.2_Missense_Mutation_p.H164Y|ZNF493_uc002npy.2_Missense_Mutation_p.H36Y	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	36	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAAAGTCTTTCATAAACTTTT	0.294													28	47					0	0	0.000878237	0	0
ZNF208	7757	broad.mit.edu	37	19	22156927	22156927	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:22156927A>G	uc002nqp.2	-	4	1058	c.909T>C	c.(907-909)CAT>CAC	p.H303H	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GAATTGCCTTATGTGTAGTAA	0.393													7	35					0	0	0.00198382	0	0
ZNF208	7757	broad.mit.edu	37	19	22156932	22156932	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:22156932T>G	uc002nqp.2	-	4	1053	c.904A>C	c.(904-906)ACA>CCA	p.T302P	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GCCTTATGTGTAGTAAGAGTC	0.388													7	32					0	0	0.00198382	0	0
ZNF676	163223	broad.mit.edu	37	19	22363787	22363787	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:22363787C>T	uc002nqs.1	-	3	1050	c.732G>A	c.(730-732)AAG>AAA	p.K244K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	244	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TATGAATTATCTTATGTTTAG	0.363													8	31					0	0	0.00307968	0	0
ZNF98	148198	broad.mit.edu	37	19	22574407	22574407	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:22574407T>C	uc002nqt.2	-	4	1752	c.1630A>G	c.(1630-1632)AAA>GAA	p.K544E		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	544					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TTGTAGAGTTTCTCTCCAGTA	0.348													5	14					0	0	0.00307968	0	0
ZNF99	7652	broad.mit.edu	37	19	22940941	22940941	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:22940941C>T	uc010xrh.1	-	5	1497	c.1497G>A	c.(1495-1497)GAG>GAA	p.E499E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGTAGGGTTTCTCCCCAGTAT	0.363													7	24					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	19	23159413	23159413	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:23159413G>A	uc002nqy.1	-	3		c.737C>T			uc002nqz.1_Silent_p.I178I					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		GCTTAGTAAGGATTGAGAACT	0.398													4	11					0	0	0.00024832	0	0
ZNF536	9745	broad.mit.edu	37	19	30935412	30935412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:30935412C>T	uc002nsu.1	+	2	1081	c.943C>T	c.(943-945)CTC>TTC	p.L315F	ZNF536_uc010edd.1_Missense_Mutation_p.L315F	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	315	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGAGGAGGAGCTCATCAGCCA	0.647													17	61					0	0	0.00121646	0	0
ZNF536	9745	broad.mit.edu	37	19	31040258	31040258	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:31040258C>T	uc002nsu.1	+	4	3870	c.3732C>T	c.(3730-3732)CCC>CCT	p.P1244P	ZNF536_uc010edd.1_Silent_p.P1244P	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1244					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCCAGGACCCCTTGGCGGGCC	0.642													4	19					0	0	0.00024832	0	0
LSM14A	26065	broad.mit.edu	37	19	34685389	34685389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:34685389C>T	uc002nvb.3	+	2	324	c.128C>T	c.(127-129)TCC>TTC	p.S43F	LSM14A_uc002nva.3_Missense_Mutation_p.S43F|LSM14A_uc010xru.1_Missense_Mutation_p.S43F	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	43					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					CCAGTTCGATCCTTTGGTACA	0.403													40	37					0	0	0.00361006	0	0
LSM14A	26065	broad.mit.edu	37	19	34712526	34712526	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:34712526C>T	uc002nvb.3	+	9	1447	c.1251C>T	c.(1249-1251)TTC>TTT	p.F417F	LSM14A_uc002nva.3_Silent_p.F417F|LSM14A_uc010xru.1_Silent_p.F376F|LSM14A_uc002nvc.3_Silent_p.F223F	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	417					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					GTCTTGGTTTCCGTGGTGGCA	0.577													7	26					0	0	0.00198382	0	0
CD22	933	broad.mit.edu	37	19	35832700	35832701	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:35832700_35832701CC>AG	uc010edt.2	+	9	1944_1945	c.1867_1868CC>AG	c.(1867-1869)CCC>AGC	p.P623S	CD22_uc010xst.1_Missense_Mutation_p.P451S|CD22_uc010edu.2_Missense_Mutation_p.P535S|CD22_uc010edv.2_Missense_Mutation_p.P623S|CD22_uc002nzb.3_Missense_Mutation_p.P446S|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	623	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CGCCAACCCTCCCGTCTCCCAC	0.609													5	12					0	0	6.4e-05	0	0
CD22	933	broad.mit.edu	37	19	35832865	35832865	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:35832865T>C	uc010edt.2	+	9	2109	c.2032T>C	c.(2032-2034)TAC>CAC	p.Y678H	CD22_uc010xst.1_Missense_Mutation_p.Y506H|CD22_uc010edu.2_Missense_Mutation_p.Y590H|CD22_uc010edv.2_Missense_Mutation_p.Y678H|CD22_uc002nzb.3_Missense_Mutation_p.Y501H|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	678	Extracellular (Potential).				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CCTCACCGTCTACTGTAAGGC	0.438													4	32					0	0	0.000602214	0	0
U2AF1L4	199746	broad.mit.edu	37	19	36234992	36234992	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:36234992A>G	uc002obg.2	-	5	418	c.109T>C	c.(109-111)TTC>CTC	p.F37L	TMEM149_uc002obb.2_5'Flank|TMEM149_uc002obc.2_5'Flank|TMEM149_uc002obd.3_5'Flank|TMEM149_uc010xsy.1_5'Flank|TMEM149_uc010eej.2_5'UTR|U2AF1L4_uc002obh.1_Silent_p.G13G|U2AF1L4_uc002obe.2_Missense_Mutation_p.F96L|U2AF1L4_uc002obf.2_Missense_Mutation_p.F96L|PSENEN_uc002obi.1_5'Flank|PSENEN_uc002obj.1_5'Flank|PSENEN_uc002obk.1_5'Flank			Q8WU68	U2AF4_HUMAN	Homo sapiens cDNA FLJ35525 fis, clone SPLEN2001650.	135	RRM.				mRNA processing|RNA splicing	nuclear speck|spliceosomal complex	nucleotide binding|RNA binding|zinc ion binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCCCGTTGAACCAGCGGTTA	0.577													6	20					0	0	0.00116845	0	0
PRODH2	58510	broad.mit.edu	37	19	36297455	36297455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:36297455C>T	uc002obx.1	-	8	1124	c.1106G>A	c.(1105-1107)AGG>AAG	p.R369K		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	369					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGGCCGGCCCTGTGCGCAGC	0.637													12	57					0	0	0.00185496	0	0
NPHS1	4868	broad.mit.edu	37	19	36339028	36339028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:36339028C>T	uc002oby.2	-	11	1355	c.1355G>A	c.(1354-1356)GGC>GAC	p.G452D		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	452	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GAGCTTCTGGCCCTCTGGGGG	0.627													14	32					0	0	0.000566183	0	0
WDR62	284403	broad.mit.edu	37	19	36557193	36557193	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:36557193T>G	uc002odc.2	+	5	516	c.425T>G	c.(424-426)GTG>GGG	p.V142G	WDR62_uc002odd.2_Missense_Mutation_p.V142G|WDR62_uc002odb.2_Missense_Mutation_p.V142G	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	142	WD 1.				cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			ATCTGGGATGTGGAGGAGAAG	0.572													4	19					0	0	0.000602214	0	0
ZFP14	57677	broad.mit.edu	37	19	36832073	36832073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:36832073G>A	uc002odx.1	-	4	748	c.655C>T	c.(655-657)CAC>TAC	p.H219Y	ZFP14_uc010xtd.1_Missense_Mutation_p.H220Y|ZFP14_uc010eex.1_Missense_Mutation_p.H219Y	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	219	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					TGAAGTTTGTGATGTCGAATA	0.443													13	53					0	0	0.00244969	0	0
ZNF260	339324	broad.mit.edu	37	19	37005502	37005502	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:37005502G>A	uc002oee.1	-	4	1483	c.639C>T	c.(637-639)ATC>ATT	p.I213I	ZNF260_uc002oed.1_Silent_p.I210I|ZNF260_uc010eey.1_Silent_p.I210I|ZNF260_uc002oef.1_Silent_p.I210I	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	213	C2H2-type 6.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					CTCCAGTATGGATTCTCTGAT	0.398													24	72					0	0	0.00229938	0	0
ZNF461	92283	broad.mit.edu	37	19	37130728	37130729	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:37130728_37130729GG>TT	uc002oem.2	-	6	746_747	c.518_519CC>AA	c.(517-519)CCC>CAA	p.P173Q	ZNF461_uc002oen.2_Missense_Mutation_p.P142Q|ZNF461_uc010xtj.1_Missense_Mutation_p.P150Q	NM_153257	NP_694989	Q8TAF7	ZN461_HUMAN	gonadotropin inducible transcription repressor	173					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			GGCTAAAAATGGGCATGTTTTC	0.337													13	183					0	0	6.4e-05	0	0
ZNF461	92283	broad.mit.edu	37	19	37155642	37155642	+	Translation_Start_Site	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:37155642C>A	uc002oem.2	-	2	195	c.-33G>T	c.(-35--31)GAGGA>GATGA		ZNF461_uc002oen.2_Translation_Start_Site|ZNF461_uc010xtj.1_Translation_Start_Site	NM_153257	NP_694989	Q8TAF7	ZN461_HUMAN	gonadotropin inducible transcription repressor						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TTATTTAATCCTCTTCTTCGT	0.358													8	147					0.00307968	0.00853147	0.00307968	1	0
ZNF568	374900	broad.mit.edu	37	19	37441016	37441016	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:37441016C>G	uc002ofc.2	+	7	1476	c.961C>G	c.(961-963)CTC>GTC	p.L321V	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Missense_Mutation_p.L245V|ZNF568_uc010efe.2_Missense_Mutation_p.L245V|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	321	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAAATCAAATCTCATTGAACA	0.398													10	18					0	0	0.000442599	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677573	37677573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:37677573C>T	uc002ofq.2	-	5	1120	c.866G>A	c.(865-867)CGA>CAA	p.R289Q	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.R103Q	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	289	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATGAATTCTTCGGTGTGCAAT	0.408													28	108					0	0	0.00106085	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677885	37677885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:37677885G>A	uc002ofq.2	-	5	808	c.554C>T	c.(553-555)CCC>CTC	p.P185L	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Intron	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	185					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCACTTATAGGGCTTCTCTCT	0.378													19	57					0	0	0.000958276	0	0
ZNF573	126231	broad.mit.edu	37	19	38229581	38229581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:38229581G>A	uc002ohe.2	-	4	1832	c.1810C>T	c.(1810-1812)CAT>TAT	p.H604Y	ZNF573_uc010efs.2_Missense_Mutation_p.H517Y|ZNF573_uc002ohd.2_Missense_Mutation_p.H602Y|ZNF573_uc002ohf.2_Missense_Mutation_p.H546Y|ZNF573_uc002ohg.2_Missense_Mutation_p.H516Y	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	584	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			CCACCAGTATGAATTTTCTGA	0.388													14	60					0	0	0.00244969	0	0
ZNF573	126231	broad.mit.edu	37	19	38230877	38230877	+	Missense_Mutation	SNP	G	A	A	rs149253687	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:38230877G>A	uc002ohe.2	-	4	536	c.514C>T	c.(514-516)CGT>TGT	p.R172C	ZNF573_uc010efs.2_Missense_Mutation_p.R85C|ZNF573_uc002ohd.2_Missense_Mutation_p.R170C|ZNF573_uc002ohf.2_Missense_Mutation_p.R114C|ZNF573_uc002ohg.2_Missense_Mutation_p.R84C	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	152	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			TAGCCACTACGAAAGTTCTTC	0.373													18	81					0	0	0.00074312	0	0
RYR1	6261	broad.mit.edu	37	19	38976641	38976641	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:38976641C>T	uc002oit.2	+	34	5476	c.5346C>T	c.(5344-5346)TTC>TTT	p.F1782F	RYR1_uc002oiu.2_Silent_p.F1782F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1782	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCCCCTGTTTCGTGGCCGCTC	0.682													5	25					0	0	0.00116845	0	0
MAP4K1	11184	broad.mit.edu	37	19	39087756	39087756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:39087756C>T	uc002oix.1	-	25	1967	c.1859G>A	c.(1858-1860)GGC>GAC	p.G620D	MAP4K1_uc002oiw.1_Missense_Mutation_p.G207D|MAP4K1_uc002oiy.1_Missense_Mutation_p.G620D	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	620	CNH.				activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CAGGAACGGGCCCCCAGAGCT	0.597													4	11					0	0	0.00024832	0	0
HNRNPL	3191	broad.mit.edu	37	19	39336546	39336546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:39336546C>T	uc010xul.1	-	3	582	c.571G>A	c.(571-573)GTG>ATG	p.V191M	HNRNPL_uc010xum.1_Missense_Mutation_p.V58M|HNRNPL_uc010xun.1_5'Flank	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	191					nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			ACACTGTTCACGCTCCGGGAG	0.522													22	69					0	0	0.00278032	0	0
FCGBP	8857	broad.mit.edu	37	19	40420093	40420093	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:40420093C>T	uc002omp.3	-	6	2909	c.2901G>A	c.(2899-2901)AGG>AGA	p.R967R		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	967	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CGACGGCATCCCTGCCCTGTC	0.602													13	17					0	0	0.00244969	0	0
FCGBP	8857	broad.mit.edu	37	19	40424009	40424009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:40424009C>T	uc002omp.3	-	4	2202	c.2194G>A	c.(2194-2196)GTT>ATT	p.V732I		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	732						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CAGTCCCCAACCGAGATGCCA	0.617													5	31					0	0	0.00307968	0	0
ZNF780A	284323	broad.mit.edu	37	19	40581652	40581652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:40581652G>A	uc002omy.2	-	6	922	c.697C>T	c.(697-699)CTT>TTT	p.L233F	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.L233F|ZNF780A_uc010xvh.1_Missense_Mutation_p.L234F	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	233	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					AGCAGGGTAAGAAGACTAAAG	0.388													19	48					0	0	0.000958276	0	0
MAP3K10	4294	broad.mit.edu	37	19	40719522	40719522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:40719522C>T	uc002ona.2	+	9	2224	c.1936C>T	c.(1936-1938)CCG>TCG	p.P646S	MAP3K10_uc002onb.2_Missense_Mutation_p.P35S	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	646					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						CGAGCCCTccccgggggcgcg	0.542													3	2					0	0	6.4e-05	0	0
PRX	57716	broad.mit.edu	37	19	40900064	40900064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:40900064G>A	uc002onr.2	-	7	4464	c.4195C>T	c.(4195-4197)CCC>TCC	p.P1399S	PRX_uc002onq.2_Missense_Mutation_p.P1260S|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1399					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGGGACTTGGGGGCTGCATCG	0.701													9	20					0	0	0.000673444	0	0
SPTBN4	57731	broad.mit.edu	37	19	41071430	41071430	+	Missense_Mutation	SNP	G	A	A	rs139699793	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:41071430G>A	uc002ony.2	+	28	6103	c.6017G>A	c.(6016-6018)CGA>CAA	p.R2006Q	SPTBN4_uc002onz.2_Missense_Mutation_p.R2006Q|SPTBN4_uc010egx.2_Missense_Mutation_p.R749Q	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2006	Spectrin 17.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GAGCTGGGGCGATCTCTGCTG	0.632													6	11					0	0	0.00307968	0	0
CEACAM6	4680	broad.mit.edu	37	19	42260663	42260663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:42260663G>A	uc002orm.2	+	2	369	c.220G>A	c.(220-222)GAT>AAT	p.D74N		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	74	Ig-like V-type.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CGAAAGAGTGGATGGCAACAG	0.507													14	66					0	0	0.00316338	0	0
ZNF574	64763	broad.mit.edu	37	19	42584034	42584034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:42584034C>T	uc002osm.3	+	2	1445	c.1276C>T	c.(1276-1278)CCA>TCA	p.P426S	ZNF574_uc002osk.3_Missense_Mutation_p.P516S	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	426	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				AACACCAGTCCCACCAGAGGA	0.582													5	32					0	0	0.00116845	0	0
CIC	23152	broad.mit.edu	37	19	42796853	42796853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:42796853C>T	uc002otf.1	+	14	3351	c.3311C>T	c.(3310-3312)TCC>TTC	p.S1104F		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1104	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GCACCCACCTCCTCAGCACCC	0.667			T	DUX4	soft tissue sarcoma								15	37					0	0	0.000566183	0	0
CEACAM1	634	broad.mit.edu	37	19	43023216	43023216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:43023216C>T	uc002otv.2	-	5	1243	c.1130G>A	c.(1129-1131)GGC>GAC	p.G377D	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_Intron|CEACAM1_uc002otw.2_Missense_Mutation_p.G377D|CEACAM1_uc010eij.2_Missense_Mutation_p.G377D|CEACAM1_uc002otx.2_Intron|CEACAM1_uc002oty.2_Intron|CEACAM1_uc002otz.2_Intron|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Missense_Mutation_p.G377D|CEACAM1_uc002oub.2_Silent_p.G332G	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	377	Ig-like C2-type 3.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	GGTGGTGTTGCCCTGGGACAG	0.527													11	44					0	0	0.000978159	0	0
PSG3	5671	broad.mit.edu	37	19	43242876	43242876	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:43242876G>C	uc002oue.2	-	2	562	c.430C>G	c.(430-432)CTG>GTG	p.L144V	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.L166V	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	144	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGTCACTCACGGTATAAGGTG	0.522													42	48					0	0	0.00361006	0	0
PSG1	5669	broad.mit.edu	37	19	43383729	43383729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:43383729C>T	uc002ovb.2	-	1	143	c.5G>A	c.(4-6)GGA>GAA	p.G2E	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.G2E|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.G2E|PSG1_uc010eio.1_Missense_Mutation_p.G2E|PSG1_uc002oux.1_5'Flank|PSG1_uc002ouy.1_Missense_Mutation_p.G2E|PSG1_uc002ouz.1_Missense_Mutation_p.G2E|PSG1_uc002ova.1_Missense_Mutation_p.G2E|PSG1_uc002ovc.2_Missense_Mutation_p.G2E|PSG1_uc002ovd.1_Missense_Mutation_p.G2E	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	2					female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TGAGAGGGTTCCCATGGTCTC	0.567													22	29					0	0	0.000720815	0	0
PSG6	5675	broad.mit.edu	37	19	43420350	43420350	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:43420350G>A	uc002ovj.1	-	2	406	c.354C>T	c.(352-354)TCC>TCT	p.S118S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ovf.1_Silent_p.S118S|PSG6_uc002ovg.1_Silent_p.S118S	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	118	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GTAAGGTGTAGGATCCTGCAT	0.473													69	80					0	0	0.00361006	0	0
ZNF283	284349	broad.mit.edu	37	19	44351947	44351947	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44351947T>C	uc002oxr.3	+	7	1462	c.1194T>C	c.(1192-1194)ACT>ACC	p.T398T	ZNF283_uc002oxp.3_Silent_p.T259T	NM_181845	NP_862828	Q8N7M2	ZN283_HUMAN	zinc finger protein 283	398					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TATTTCATACTGGTGAGAAAC	0.363													22	124					0	0	0.00332997	0	0
ZNF230	7773	broad.mit.edu	37	19	44514591	44514591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44514591C>T	uc002oyb.1	+	5	651	c.400C>T	c.(400-402)CAT>TAT	p.H134Y		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	134	KRNB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				ATCTATAATTCATACAGGACA	0.438													8	46					0	0	0.000442599	0	0
ZNF230	7773	broad.mit.edu	37	19	44515568	44515568	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44515568G>C	uc002oyb.1	+	5	1628	c.1377G>C	c.(1375-1377)AGG>AGC	p.R459S		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	459					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				GCTACAAGAGGCGCTTGAATC	0.279													7	17					0	0	0.00307968	0	0
ZNF222	7673	broad.mit.edu	37	19	44536174	44536174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44536174C>T	uc002oyc.2	+	4	530	c.347C>T	c.(346-348)CCT>CTT	p.P116L	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Missense_Mutation_p.P156L|ZNF222_uc002oyd.2_Missense_Mutation_p.P62L	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				AGAGAAAAACCTTTCCAGGGT	0.388													6	49					0	0	0.00116845	0	0
ZNF223	7766	broad.mit.edu	37	19	44570592	44570592	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44570592T>G	uc002oyf.1	+	5	864	c.611T>G	c.(610-612)TTT>TGT	p.F204C	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	204	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				GAGAAACTCTTTAAGTGTGAC	0.423													5	90					0	0	0.000602214	0	0
ZNF223	7766	broad.mit.edu	37	19	44570825	44570825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44570825C>T	uc002oyf.1	+	5	1097	c.844C>T	c.(844-846)CAC>TAC	p.H282Y	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	282	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				TCAGAGAATTCACACAGGGGA	0.423													12	68					0	0	0.00136819	0	0
ZNF235	9310	broad.mit.edu	37	19	44792819	44792819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44792819G>A	uc002oza.3	-	5	872	c.769C>T	c.(769-771)CAC>TAC	p.H257Y	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.H253Y|ZNF235_uc010xwx.1_Missense_Mutation_p.H171Y	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	257					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				TGTCCTGTGTGAATACTACGC	0.393													7	22					0	0	0.000274275	0	0
ZNF285	26974	broad.mit.edu	37	19	44890982	44890982	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44890982C>T	uc002ozd.3	-	4	1512	c.1425G>A	c.(1423-1425)CAG>CAA	p.Q475Q	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Silent_p.Q482Q	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	475	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						TGTGAACTCTCTGATGAGTGT	0.403													9	23					0	0	0.000673444	0	0
ZNF180	7733	broad.mit.edu	37	19	44980699	44980699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:44980699C>T	uc002ozf.3	-	5	2281	c.1999G>A	c.(1999-2001)GGA>AGA	p.G667R	ZNF180_uc002ozh.3_Missense_Mutation_p.G324R|ZNF180_uc002ozi.3_Missense_Mutation_p.G640R|ZNF180_uc002ozg.3_Missense_Mutation_p.G666R|ZNF180_uc010ejm.2_Missense_Mutation_p.G642R	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	667	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				AAAGCTTTTCCACACTGAATA	0.353													30	105					0	0	0.00106085	0	0
CEACAM20	125931	broad.mit.edu	37	19	45024608	45024608	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:45024608G>A	uc010ejn.1	-	5	946	c.930C>T	c.(928-930)ATC>ATT	p.I310I	CEACAM20_uc010ejo.1_Silent_p.I310I|CEACAM20_uc010ejp.1_Silent_p.I310I|CEACAM20_uc010ejq.1_Silent_p.I310I	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	310	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GGCCATGGATGATTAGGGTCC	0.597													20	117					0	0	0.00121646	0	0
CEACAM20	125931	broad.mit.edu	37	19	45028250	45028250	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:45028250C>G	uc010ejn.1	-	3	257	c.241G>C	c.(241-243)GAG>CAG	p.E81Q	CEACAM20_uc010ejo.1_Missense_Mutation_p.E81Q|CEACAM20_uc010ejp.1_Missense_Mutation_p.E81Q|CEACAM20_uc010ejq.1_Missense_Mutation_p.E81Q	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	81	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TCCTTCTGCTCTATGGCAGTG	0.522													43	178					0	0	0.00361006	0	0
CEACAM20	125931	broad.mit.edu	37	19	45033495	45033495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:45033495C>T	uc010ejn.1	-	1	54	c.38G>A	c.(37-39)GGA>GAA	p.G13E	CEACAM20_uc010ejo.1_Missense_Mutation_p.G13E|CEACAM20_uc010ejp.1_Missense_Mutation_p.G13E|CEACAM20_uc010ejq.1_Missense_Mutation_p.G13E	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	13						integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				AAGCAGGATTCCCATCCAGTG	0.522													13	95					0	0	0.00074312	0	0
CEACAM19	56971	broad.mit.edu	37	19	45186758	45186758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:45186758C>T	uc002ozo.3	+	8	1379	c.899C>T	c.(898-900)TCC>TTC	p.S300F	CEACAM19_uc002ozp.3_Missense_Mutation_p.S299F	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	300	Cytoplasmic (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				GTGCCAACTTCCTGATGGGTC	0.632													11	35					0	0	0.00185496	0	0
FOSB	2354	broad.mit.edu	37	19	45976161	45976161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:45976161C>T	uc002pbx.3	+	4	1500	c.908C>T	c.(907-909)TCG>TTG	p.S303L	ERCC1_uc002pbu.1_Intron|FOSB_uc010eke.2_Missense_Mutation_p.S228L|FOSB_uc002pby.3_Missense_Mutation_p.S267L|FOSB_uc010eka.1_3'UTR|FOSB_uc010ekb.1_3'UTR|FOSB_uc010ekc.1_3'UTR|FOSB_uc010ekf.2_Missense_Mutation_p.S264L|FOSB_uc010ekd.1_3'UTR|FOSB_uc010ekg.2_Missense_Mutation_p.S160L|FOSB_uc002pca.3_Missense_Mutation_p.S254L	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	303					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		TACACTTCTTCGTTTGTCCTC	0.617													9	45					0	0	0.000978159	0	0
GPR4	2828	broad.mit.edu	37	19	46094750	46094750	+	Silent	SNP	G	A	A	rs144692714		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:46094750G>A	uc002pcm.2	-	2	1320	c.375C>T	c.(373-375)TTC>TTT	p.F125F	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	125	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		GCAGGCGGGCGAAGCGGAGTG	0.642													5	15					0	0	0.000602214	0	0
FBXO46	23403	broad.mit.edu	37	19	46215700	46215701	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:46215700_46215701GG>AA	uc002pcy.2	-	2	1178_1179	c.1053_1054CC>TT	c.(1051-1056)CCCCCT>CCTTCT	p.P352S	FBXO46_uc002pcz.2_Missense_Mutation_p.P352S	NM_001080469	NP_001073938	Q6PJ61	FBX46_HUMAN	F-box protein 46	352							protein binding			ovary(1)|lung(1)|breast(1)	3		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00568)|GBM - Glioblastoma multiforme(486;0.0844)|Epithelial(262;0.201)		GGGGGCGGAGGGGGCGCCGGGG	0.698													4	8					0	0	6.4e-05	0	0
SYMPK	8189	broad.mit.edu	37	19	46345590	46345590	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:46345590G>A	uc002pdn.2	-	9	1250	c.1005C>T	c.(1003-1005)ATC>ATT	p.I335I	SYMPK_uc002pdo.1_Silent_p.I335I|SYMPK_uc002pdp.1_Silent_p.I335I|SYMPK_uc002pdq.1_Silent_p.I335I	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	335					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		TGTTGCGGGCGATCTCGGCCT	0.637													7	30					0	0	0.000274275	0	0
MYPOP	339344	broad.mit.edu	37	19	46393958	46393958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:46393958G>A	uc002pdt.2	-	3	1210	c.1123C>T	c.(1123-1125)CCG>TCG	p.P375S		NM_001012643	NP_001012661	Q86VE0	MYPOP_HUMAN	Myb protein P42POP	375	Pro-rich.					nucleus	DNA binding				0						GAGTCGTGCGGAGGGAGCGGG	0.647													4	7					0	0	0.000602214	0	0
PNMAL1	55228	broad.mit.edu	37	19	46974208	46974208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:46974208C>T	uc002peq.3	-	2	391	c.85G>A	c.(85-87)GGC>AGC	p.G29S	PNMAL1_uc002per.3_Missense_Mutation_p.G29S	NM_018215	NP_060685	Q86V59	PNML1_HUMAN	PNMA-like 1 isoform a	29											0		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000166)|all cancers(93;0.0014)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		tctgggatgcctgtgaccaac	0													10	39					0	0	0.000978159	0	0
GNG8	94235	broad.mit.edu	37	19	47137369	47137370	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:47137369_47137370GG>AA	uc010xyd.1	-	2	176_177	c.176_177CC>TT	c.(175-177)CCC>CTT	p.P59L		NM_033258	NP_150283	Q9UK08	GBG8_HUMAN	guanine nucleotide binding protein (G protein),	59					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	extracellular region|heterotrimeric G-protein complex	GTPase activity|signal transducer activity				0		Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.000621)|Epithelial(262;0.0171)|GBM - Glioblastoma multiforme(486;0.0325)		TGTCGCGGAAGGGGTTCTCCGC	0.594													5	22					0	0	6.4e-05	0	0
NAPA	8775	broad.mit.edu	37	19	47996236	47996236	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:47996236G>A	uc002pha.1	-	7	843	c.543C>T	c.(541-543)GCC>GCT	p.A181A	uc002pgz.1_Intron|NAPA_uc002phb.1_Silent_p.A142A|NAPA_uc002phc.1_Silent_p.A68A|NAPA_uc002phd.1_Silent_p.A181A|NAPA_uc010elf.1_Silent_p.A75A	NM_003827	NP_003818	P54920	SNAA_HUMAN	N-ethylmaleimide-sensitive factor attachment	181					cellular membrane fusion|intra-Golgi vesicle-mediated transport|post-Golgi vesicle-mediated transport	cytosol					0		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000466)|all cancers(93;0.000739)|Epithelial(262;0.0168)|GBM - Glioblastoma multiforme(486;0.049)		AGATGTCAATGGCCTTCTGAT	0.612													8	35					0	0	0.00244969	0	0
CRX	1406	broad.mit.edu	37	19	48343113	48343113	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:48343113C>T	uc002phq.3	+	4	993	c.789C>T	c.(787-789)CCC>CCT	p.P263P		NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	263					organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		CCTACAGCCCCGTGGATAGCT	0.617													10	50					0	0	0.000673444	0	0
LIG1	3978	broad.mit.edu	37	19	48619177	48619177	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:48619177G>A	uc002pia.1	-	27	2749	c.2629C>T	c.(2629-2631)CGA>TGA	p.R877*	LIG1_uc010xze.1_Nonsense_Mutation_p.R570*|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Nonsense_Mutation_p.R809*|LIG1_uc010xzg.1_Nonsense_Mutation_p.R846*	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	877					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	TCACGGACTCGAATAAACCGA	0.647								NER					9	16					0	0	0.000442599	0	0
LIG1	3978	broad.mit.edu	37	19	48631178	48631178	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:48631178G>C	uc002pia.1	-	20	2041	c.1921C>G	c.(1921-1923)CGC>GGC	p.R641G	LIG1_uc010xze.1_Missense_Mutation_p.R334G|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.R573G|LIG1_uc010xzg.1_Missense_Mutation_p.R610G	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	641					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	TTGCGTTTGCGGGTGGTGAGC	0.592								NER					4	108					0	0	0.000602214	0	0
RASIP1	54922	broad.mit.edu	37	19	49243457	49243457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:49243457G>A	uc002pki.2	-	2	280	c.83C>T	c.(82-84)CCC>CTC	p.P28L		NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	28					signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		CTGCTTCCTGGGGGAATTGAT	0.657													8	18					0	0	0.000274275	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49362909	49362909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:49362909G>A	uc002pkx.2	-	7	1060	c.509C>T	c.(508-510)CCC>CTC	p.P170L	PLEKHA4_uc002pkw.1_5'Flank|PLEKHA4_uc010eml.2_Missense_Mutation_p.P170L	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	170	Pro-rich.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GCCCTCCCCGGGCTGGGGTCG	0.612													6	25					0	0	0.00198382	0	0
HRC	3270	broad.mit.edu	37	19	49657866	49657866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:49657866C>T	uc002pmv.2	-	1	816	c.629G>A	c.(628-630)GGA>GAA	p.G210E		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	210	4 X tandem repeats, acidic.|1-1.|6 X approximate tandem repeats.				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		GGCCTGGTGTCCATACTCAGT	0.473													6	9					0	0	0.00116845	0	0
SLC6A16	28968	broad.mit.edu	37	19	49793384	49793384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:49793384G>A	uc002pmz.2	-	12	2441	c.2207C>T	c.(2206-2208)TCC>TTC	p.S736F	SLC6A16_uc002pna.2_3'UTR	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	736	Cytoplasmic (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		ATGAAGTTAGGAAGTCACATT	0.388													14	53					0	0	0.00244969	0	0
NOSIP	51070	broad.mit.edu	37	19	50060140	50060140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:50060140C>T	uc002pok.2	-	7	681	c.529G>A	c.(529-531)GAG>AAG	p.E177K	NOSIP_uc002pol.2_Missense_Mutation_p.E177K|NOSIP_uc010yay.1_RNA	NM_015953	NP_057037	Q9Y314	NOSIP_HUMAN	nitric oxide synthase interacting protein	177					negative regulation of nitric-oxide synthase activity|nitric oxide metabolic process	cytosol|nucleus	protein binding			skin(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00321)|GBM - Glioblastoma multiforme(134;0.0133)		ACCGGCTTCTCCAGCTTGGTG	0.682													6	17					0	0	0.00307968	0	0
PRR12	57479	broad.mit.edu	37	19	50098347	50098347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:50098347C>T	uc002poo.3	+	4	755	c.755C>T	c.(754-756)TCC>TTC	p.S252F		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GCTTCCTCTTCCGCTGCCGCC	0.711													5	12					0	0	0.00198382	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169110	50169110	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:50169110C>T	uc002ppa.2	+	1	712	c.30C>T	c.(28-30)CCC>CCT	p.P10P	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'UTR|IRF3_uc002pox.1_5'UTR|IRF3_uc002poy.1_5'UTR|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'UTR|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.P10P	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	10					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TGTTCCCGCCCCTATGCCCTT	0.537													8	52					0	0	0.00185496	0	0
MYBPC2	4606	broad.mit.edu	37	19	50962496	50962496	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:50962496G>A	uc002psf.2	+	23	2775	c.2724G>A	c.(2722-2724)GGG>GGA	p.G908G		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	908	Ig-like C2-type 6.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CCGACTCCGGGGAGTACGAGC	0.711													7	5					0	0	0.000673444	0	0
KLK1	3816	broad.mit.edu	37	19	51323257	51323257	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51323257G>A	uc002ptk.1	-	4	570	c.531C>T	c.(529-531)CTC>CTT	p.L177L	KLK1_uc010ycg.1_RNA	NM_002257	NP_002248	P06870	KLK1_HUMAN	kallikrein 1 preproprotein	177	Peptidase S1.				proteolysis	nucleus	serine-type endopeptidase activity				0		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00399)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCAGGATTTTGAGGTCCACAC	0.537													7	22					0	0	0.00198382	0	0
KLK4	9622	broad.mit.edu	37	19	51411946	51411946	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51411946A>G	uc002pua.1	-	3	364	c.364T>C	c.(364-366)TTG>CTG	p.L122L	KLK4_uc002pty.1_Silent_p.L73L|KLK4_uc002ptz.1_RNA|KLK4_uc002pub.1_Silent_p.L27L|KLK4_uc002puc.1_RNA|KLK4_uc010eoi.1_Silent_p.L27L|KLK4_uc002pud.1_Silent_p.L27L	NM_004917	NP_004908	Q9Y5K2	KLK4_HUMAN	kallikrein-related peptidase 4 preproprotein	122	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00624)|GBM - Glioblastoma multiforme(134;0.00878)		GATTCGTCCAACTTGATGAGC	0.597													6	37					0	0	0.00198382	0	0
KLK4	9622	broad.mit.edu	37	19	51412047	51412047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51412047G>A	uc002pua.1	-	3	263	c.263C>T	c.(262-264)GCC>GTC	p.A88V	KLK4_uc002pty.1_Missense_Mutation_p.A39V|KLK4_uc002ptz.1_RNA|KLK4_uc002pub.1_5'UTR|KLK4_uc002puc.1_RNA|KLK4_uc010eoi.1_5'UTR|KLK4_uc002pud.1_5'UTR	NM_004917	NP_004908	Q9Y5K2	KLK4_HUMAN	kallikrein-related peptidase 4 preproprotein	88	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00624)|GBM - Glioblastoma multiforme(134;0.00878)		CTCTTGGTCGGCCTCAAGACT	0.537													13	22					0	0	0.00316338	0	0
KLK5	25818	broad.mit.edu	37	19	51452217	51452217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51452217G>A	uc002pue.2	-	5	708	c.490C>T	c.(490-492)CGT>TGT	p.R164C	KLK5_uc002puf.2_Missense_Mutation_p.R164C|KLK5_uc002pug.2_Missense_Mutation_p.R164C	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	164	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		TTAGTGGGACGAATTCTTCTG	0.547													7	35					0	0	0.00307968	0	0
KLK13	26085	broad.mit.edu	37	19	51559975	51559975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51559975C>T	uc002pvn.2	-	5	746	c.703G>A	c.(703-705)GGA>AGA	p.G235R	KLK13_uc002pvl.2_RNA|KLK13_uc002pvm.2_RNA|KLK13_uc002pvo.2_RNA|KLK13_uc002pvp.2_RNA|KLK13_uc010eon.2_Missense_Mutation_p.G162R|KLK13_uc002pvq.2_RNA|KLK13_uc010eoo.2_Missense_Mutation_p.G83R	NM_015596	NP_056411	Q9UKR3	KLK13_HUMAN	kallikrein 13 precursor	235	Peptidase S1.				proteolysis		protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00432)		GGGAAGTCTCCCCAGGAGACG	0.547													6	42					0	0	0.00116845	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51631298	51631298	+	Splice_Site	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51631298T>C	uc002pvu.2	+	5	1173	c.1106_splice	c.e5+2	p.V369_splice	SIGLEC9_uc010yct.1_Splice_Site_p.V369_splice	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor						cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		CTTCGTTGTGTAAGCATGGAC	0.612													17	67					0	0	0.00074312	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51633162	51633162	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51633162A>G	uc002pvu.2	+	7	1285	c.1218A>G	c.(1216-1218)GAA>GAG	p.E406E	SIGLEC9_uc010yct.1_Intron	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	406	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		CCCTGACTGAACCTTGGGCAG	0.483													5	31					0	0	0.00198382	0	0
CD33	945	broad.mit.edu	37	19	51729580	51729580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51729580C>T	uc002pwa.2	+	4	753	c.713C>T	c.(712-714)CCA>CTA	p.P238L	CD33_uc010eos.1_Missense_Mutation_p.P238L|CD33_uc010eot.1_Missense_Mutation_p.P111L|CD33_uc010eou.1_Intron	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	238	Extracellular (Potential).				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CCACAGAACCCAACAACTGGT	0.512													5	43					0	0	0.00116845	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51914431	51914431	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:51914431G>A	uc002pwo.2	-	11	2632	c.2016C>T	c.(2014-2016)TTC>TTT	p.F672F	SIGLEC10_uc002pwp.2_Silent_p.F614F|SIGLEC10_uc002pwq.2_Silent_p.F519F|SIGLEC10_uc002pwr.2_Silent_p.F577F|SIGLEC10_uc010ycy.1_Silent_p.F487F|SIGLEC10_uc010ycz.1_Silent_p.F529F|SIGLEC10_uc010eow.2_Silent_p.F389F	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	672	Cytoplasmic (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		TGACGCCTGGGAAGTTGAGCG	0.557													15	63					0	0	0.00244969	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52000216	52000216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:52000216C>T	uc002pwx.1	-	7	1573	c.1517G>A	c.(1516-1518)AGG>AAG	p.R506K	SIGLEC12_uc002pww.1_Missense_Mutation_p.R388K|SIGLEC12_uc010eoy.1_Missense_Mutation_p.R233K	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	506	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CGATTTCTTCCTGCAGGACCT	0.577													9	35					0	0	0.00136819	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52002912	52002912	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:52002912C>T	uc002pwx.1	-	3	923	c.867G>A	c.(865-867)AGG>AGA	p.R289R	SIGLEC12_uc002pww.1_Silent_p.R171R|SIGLEC12_uc010eoy.1_Silent_p.R16R	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	289	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		AGGTCAGGTTCCTGGGGTGGC	0.637													8	17					0	0	0.000442599	0	0
ZNF350	59348	broad.mit.edu	37	19	52469189	52469189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:52469189G>A	uc002pyd.2	-	5	745	c.517C>T	c.(517-519)CAT>TAT	p.H173Y	uc002pyb.2_Intron|uc002pyc.2_Intron	NM_021632	NP_067645	Q9GZX5	ZN350_HUMAN	zinc finger protein 350	173					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix|transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			breast(1)	1		all_neural(266;0.0505)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0179)		ATTGCAGTATGAAGTCGTTCA	0.378													32	92					0	0	0.00111076	0	0
ZNF528	84436	broad.mit.edu	37	19	52918991	52918992	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:52918991_52918992CC>TT	uc002pzh.2	+	7	1312_1313	c.886_887CC>TT	c.(886-888)CCT>TTT	p.P296F	ZNF528_uc002pzi.2_Missense_Mutation_p.P63F	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	296					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		TGGAGAGAAGCCTTACAAATGT	0.371													17	92					0	0	6.4e-05	0	0
ZNF534	147658	broad.mit.edu	37	19	52941692	52941692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:52941692G>A	uc002pzk.2	+	4	1079	c.1018G>A	c.(1018-1020)GAT>AAT	p.D340N	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Missense_Mutation_p.D327N	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	340	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAACCTTATGATTGTAAGGA	0.413													6	10					0	0	0.00198382	0	0
ZNF808	388558	broad.mit.edu	37	19	53057737	53057737	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:53057737G>T	uc010epq.1	+	5	1745	c.1568G>T	c.(1567-1569)CGG>CTG	p.R523L	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	523	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TTCCGTCACCGGGCATCCCTT	0.443													6	118					0.00198382	0.0055105	0.00198382	1	0
ZNF701	55762	broad.mit.edu	37	19	53085577	53085577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:53085577G>A	uc002pzs.1	+	4	392	c.265G>A	c.(265-267)GAA>AAA	p.E89K	ZNF701_uc010ydn.1_Missense_Mutation_p.E155K	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	89					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		TTGCTTCCAGGAAATTGAGAA	0.393													12	77					0	0	0.00136819	0	0
ZNF701	55762	broad.mit.edu	37	19	53085911	53085911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:53085911C>T	uc002pzs.1	+	4	726	c.599C>T	c.(598-600)TCA>TTA	p.S200L	ZNF701_uc010ydn.1_Missense_Mutation_p.S266L	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	200					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		CTCCAGTCTTCATTACTCACA	0.373													11	59					0	0	0.00136819	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473687	53473687	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:53473687G>A	uc002qan.3	-	4		c.814C>T				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						ATGGGTTTTAGGAATACAAGA	0.363													7	23					0	0	0.00198382	0	0
ZNF665	79788	broad.mit.edu	37	19	53669145	53669145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:53669145G>A	uc010eqm.1	-	4	698	c.598C>T	c.(598-600)CAT>TAT	p.H200Y		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	135	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TCTCCAGTATGAATTCTCTTA	0.393													38	126					0	0	0.00128727	0	0
VN1R2	317701	broad.mit.edu	37	19	53761937	53761937	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:53761937G>A	uc002qbi.2	+	1	393	c.309G>A	c.(307-309)GGG>GGA	p.G103G		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	103	Helical; Name=2; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		GAATCCTGGGGAATTTTTCAC	0.259													10	15					0	0	0.000673444	0	0
ZNF761	388561	broad.mit.edu	37	19	53958609	53958609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:53958609C>T	uc010eqp.2	+	7	1306	c.848C>T	c.(847-849)TCA>TTA	p.S283L	ZNF761_uc010ydy.1_Missense_Mutation_p.S229L|ZNF761_uc002qbt.1_Missense_Mutation_p.S229L	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	283	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		AGTCAGACGTCATCCCTTACA	0.408													13	83					0	0	0.00244969	0	0
ZNF331	55422	broad.mit.edu	37	19	54080038	54080038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54080038G>A	uc002qbx.1	+	7	1658	c.224G>A	c.(223-225)AGA>AAA	p.R75K	ZNF331_uc002qby.1_Missense_Mutation_p.R75K|ZNF331_uc002qbz.1_Missense_Mutation_p.R75K|ZNF331_uc002qca.1_Missense_Mutation_p.R75K|ZNF331_uc010eqr.1_Missense_Mutation_p.R75K|ZNF331_uc002qcb.1_Missense_Mutation_p.R75K|ZNF331_uc002qcc.1_Missense_Mutation_p.R75K|ZNF331_uc002qcd.1_Missense_Mutation_p.R75K	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	75	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		TCAGATAGAAGAAGTAAATCC	0.388			T	?	follicular thyroid adenoma								14	36					0	0	0.00185496	0	0
DPRX	503834	broad.mit.edu	37	19	54140039	54140039	+	Nonsense_Mutation	SNP	C	T	T	rs150237904		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54140039C>T	uc002qcf.1	+	3	424	c.373C>T	c.(373-375)CGA>TGA	p.R125*		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	125						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		CACGGGTCATCGAGTCCCCTC	0.567													13	40					0	0	0.00244969	0	0
MIR525	574470	broad.mit.edu	37	19	54200848	54200848	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54200848C>T	hsa-mir-525|MI0003152	+			c.62C>T			MIR523_hsa-mir-523|MI0003153_5'Flank|MIR518F_hsa-mir-518f|MI0003154_5'Flank																	0						GAAGGCGCTTCCCTTTAGAGC	0.423													19	15					0	0	0.00229938	0	0
MIR523	574471	broad.mit.edu	37	19	54201686	54201686	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54201686G>A	hsa-mir-523|MI0003153	+			c.48G>A			MIR518F_hsa-mir-518f|MI0003154_5'Flank|MIR520B_hsa-mir-520b|MI0003155_5'Flank																	0						TTGTCTGAAAGAAAAGAACGC	0.443													17	23					0	0	0.000566183	0	0
MIR518A1	574488	broad.mit.edu	37	19	54234313	54234313	+	RNA	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54234313A>T	hsa-mir-518a-1|MI0003170	+			c.54A>T																				0						AAGAAGAGAAAGCGCTTCCCT	0.453													12	64					0	0	0.000978159	0	0
NLRP12	91662	broad.mit.edu	37	19	54313084	54313084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54313084G>A	uc002qch.3	-	3	2049	c.1829C>T	c.(1828-1830)TCC>TTC	p.S610F	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.S610F|NLRP12_uc002qcj.3_Missense_Mutation_p.S610F|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.S610F	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	610					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GAACTCCAAGGAGCCCTGCTG	0.567													7	43					0	0	0.00307968	0	0
PRKCG	5582	broad.mit.edu	37	19	54394986	54394986	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54394986G>A	uc002qcq.1	+	6	870	c.588G>A	c.(586-588)GTG>GTA	p.V196V	PRKCG_uc010eqz.1_Silent_p.V196V|PRKCG_uc010yef.1_Silent_p.V196V|PRKCG_uc010yeg.1_Silent_p.V196V|PRKCG_uc010yeh.1_Silent_p.V83V	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	196	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		ATCCCTATGTGAAACTGAAGC	0.517													13	56					0	0	0.00136819	0	0
PRKCG	5582	broad.mit.edu	37	19	54406348	54406348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54406348G>A	uc002qcq.1	+	15	1879	c.1597G>A	c.(1597-1599)GGG>AGG	p.G533R	PRKCG_uc010yeg.1_Missense_Mutation_p.G533R|PRKCG_uc010yeh.1_Missense_Mutation_p.G420R	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	533	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CCAGCCCTATGGGAAGTCTGT	0.552													41	148					0	0	0.00361006	0	0
LILRA3	11026	broad.mit.edu	37	19	54803129	54803129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54803129G>A	uc002qfd.2	-	4	613	c.548C>T	c.(547-549)TCC>TTC	p.S183F	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	183	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGGGCCCACGGAGAAGATGGC	0.572													12	28					0	0	0.00185496	0	0
LAIR1	3903	broad.mit.edu	37	19	54868146	54868146	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:54868146G>A	uc002qfk.1	-	6	847	c.537C>T	c.(535-537)CTC>CTT	p.L179L	LAIR1_uc002qfl.1_Silent_p.L162L|LAIR1_uc002qfm.1_Silent_p.L178L|LAIR1_uc002qfn.1_Silent_p.L161L|LAIR1_uc010yex.1_Silent_p.L172L|LAIR1_uc002qfo.2_Silent_p.L161L	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	179	Helical; (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		GGACCAGGAGGAGGAGACAGA	0.542													10	47					0	0	0.000673444	0	0
LAIR2	3904	broad.mit.edu	37	19	55019221	55019221	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55019221G>A	uc002qgc.2	+	3	308	c.186G>A	c.(184-186)AGG>AGA	p.R62R	LAIR2_uc002qga.1_RNA|LAIR2_uc002qgb.1_RNA|LAIR2_uc002qgd.2_Silent_p.R62R|LAIR2_uc010erl.2_Silent_p.R62R	NM_002288	NP_002279	Q6ISS4	LAIR2_HUMAN	leukocyte-associated immunoglobulin-like	62	Ig-like C2-type.					extracellular region	receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0967)		GCCTGGAGAGGGAGGATAGAG	0.527													9	44					0	0	0.000442599	0	0
LILRB1	10859	broad.mit.edu	37	19	55142956	55142956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55142956C>T	uc002qgj.2	+	5	416	c.76C>T	c.(76-78)CTC>TTC	p.L26F	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.L26F|LILRB1_uc002qgk.2_Missense_Mutation_p.L26F|LILRB1_uc002qgm.2_Missense_Mutation_p.L26F|LILRB1_uc010erq.2_Missense_Mutation_p.L26F|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	26	Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCCAGGGCACCTCCCCAAGCC	0.622										HNSCC(37;0.09)			9	42					0	0	0.000978159	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55285018	55285018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55285018G>A	uc002qhb.1	+	3	342	c.304G>A	c.(304-306)GGT>AGT	p.G102S	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.G102S	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	102	Extracellular (Potential).|Ig-like C2-type 1.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CAGATGCTACGGTTCTGTTAC	0.522													25	108					0	0	0.00106085	0	0
KIR2DL4	3805	broad.mit.edu	37	19	55324663	55324663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55324663C>T	uc010yfm.1	+	6	830	c.790C>T	c.(790-792)CGC>TGC	p.R264C	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Missense_Mutation_p.R259C|KIR2DL4_uc002qhg.2_Intron|KIR2DL4_uc002qhi.2_Missense_Mutation_p.R247C|KIR2DL4_uc002qhh.2_Intron|KIR2DL4_uc002qhj.2_Intron|KIR2DL4_uc002qhf.2_Intron|KIR2DL4_uc010esd.2_Intron|KIR2DL4_uc010ese.2_RNA	NM_002255	NP_002246	Q99706	KI2L4_HUMAN	killer cell immunoglobulin-like receptor, two	264	Cytoplasmic (Potential).				cellular defense response|regulation of immune response	integral to plasma membrane	protein binding|transmembrane receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0192)		TCTCCTTCATCGCTGGTGCTC	0.532													10	29					0	0	0.000673444	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55329824	55329824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55329824G>A	uc002qhk.3	+	3	188	c.125G>A	c.(124-126)GGA>GAA	p.G42E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_5'UTR|KIR3DL1_uc010esf.2_Intron|KIR3DL1_uc010yfo.1_5'UTR|KIR3DL1_uc002qhl.3_Missense_Mutation_p.G42E	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	42	Extracellular (Potential).|Ig-like C2-type 1.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		GTGCCTCGAGGAGGACACGTG	0.527													13	52					0	0	0.000422831	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55351125	55351125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55351125C>T	uc002qhm.1	+	5	681	c.635C>T	c.(634-636)TCG>TTG	p.S212L	KIR2DS4_uc010yfj.1_Nonsense_Mutation_p.R198*|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Nonsense_Mutation_p.R205*|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	212	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TGGTCAAACTCGAGTGATCCA	0.557													24	90					0	0	0.00209593	0	0
NLRP7	199713	broad.mit.edu	37	19	55441892	55441892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55441892G>A	uc002qih.3	-	9	2861	c.2785C>T	c.(2785-2787)CCA>TCA	p.P929S	NLRP7_uc002qig.3_Missense_Mutation_p.P901S|NLRP7_uc002qii.3_Missense_Mutation_p.P929S|NLRP7_uc010esk.2_Missense_Mutation_p.P929S|NLRP7_uc010esl.2_Missense_Mutation_p.P957S	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	929							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TTACAGTTTGGATTCTCTAAT	0.328													5	85					0	0	0.00198382	0	0
NLRP2	55655	broad.mit.edu	37	19	55495044	55495044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55495044G>A	uc002qij.2	+	6	2064	c.1978G>A	c.(1978-1980)GAG>AAG	p.E660K	NLRP2_uc010yfp.1_Missense_Mutation_p.E637K|NLRP2_uc010esn.2_Missense_Mutation_p.E636K|NLRP2_uc010eso.2_Missense_Mutation_p.E657K|NLRP2_uc010esp.2_Missense_Mutation_p.E638K	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	660					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GGTAATAAAGGAGAATCTCCC	0.478													9	43					0	0	0.000442599	0	0
NLRP2	55655	broad.mit.edu	37	19	55508692	55508692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55508692G>A	uc002qij.2	+	12	2973	c.2887G>A	c.(2887-2889)GGA>AGA	p.G963R	NLRP2_uc010yfp.1_Missense_Mutation_p.G940R|NLRP2_uc010esn.2_Missense_Mutation_p.G939R|NLRP2_uc010eso.2_Missense_Mutation_p.G960R|NLRP2_uc010esp.2_Missense_Mutation_p.G941R	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	963	LRR 6.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CAGGTTGTGGGGATGTTCCAT	0.577													7	51					0	0	0.000274275	0	0
RDH13	112724	broad.mit.edu	37	19	55559837	55559837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:55559837G>A	uc002qio.3	-	5	703	c.518C>T	c.(517-519)TCG>TTG	p.S173L	RDH13_uc002qip.2_Missense_Mutation_p.S102L|RDH13_uc010esr.1_RNA	NM_001145971	NP_001139443	Q8NBN7	RDH13_HUMAN	retinol dehydrogenase 13 isoform 1	173							binding|oxidoreductase activity			large_intestine(1)|ovary(1)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(297;0.199)	GBM - Glioblastoma multiforme(193;0.0504)	Vitamin A(DB00162)	GGCCAGGGACGAGAGGTTGAT	0.522													7	56					0	0	0.00198382	0	0
FIZ1	84922	broad.mit.edu	37	19	56104030	56104030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56104030G>A	uc002qli.3	-	3	1367	c.1277C>T	c.(1276-1278)CCG>CTG	p.P426L	FIZ1_uc002qlj.3_Missense_Mutation_p.P426L	NM_032836	NP_116225	Q96SL8	FIZ1_HUMAN	FLT3-interacting zinc finger 1	426	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|protein kinase binding|receptor binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		CAGGTCTCGCGGTGAGCGGAA	0.677													5	21					0	0	0.00198382	0	0
NLRP9	338321	broad.mit.edu	37	19	56244618	56244618	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56244618G>A	uc002qly.2	-	2	607	c.579C>T	c.(577-579)ATC>ATT	p.I193I		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	193	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TGGTCTCTGCGATACCGTTCA	0.458													5	35					0	0	0.00198382	0	0
NLRP4	147945	broad.mit.edu	37	19	56369540	56369540	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56369540C>T	uc002qmd.3	+	3	1203	c.781C>T	c.(781-783)CTG>TTG	p.L261L	NLRP4_uc002qmf.2_Silent_p.L186L|NLRP4_uc010etf.2_Silent_p.L92L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	261	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GCAGGTGCTTCTGAGCAGTTT	0.582													12	52					0	0	0.000422831	0	0
NLRP4	147945	broad.mit.edu	37	19	56369627	56369627	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56369627C>T	uc002qmd.3	+	3	1290	c.868C>T	c.(868-870)CAG>TAG	p.Q290*	NLRP4_uc002qmf.2_Nonsense_Mutation_p.Q215*|NLRP4_uc010etf.2_Nonsense_Mutation_p.Q121*	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	290	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GCTCCGGGATCAGGTGACGAT	0.537													5	32					0	0	0.00198382	0	0
NLRP5	126206	broad.mit.edu	37	19	56515282	56515282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56515282C>T	uc002qmj.2	+	2	263	c.263C>T	c.(262-264)TCT>TTT	p.S88F	NLRP5_uc002qmi.2_Missense_Mutation_p.S88F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	88	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AAGAAGAAATCTTCAGAATCG	0.438													17	60					0	0	0.000422831	0	0
NLRP5	126206	broad.mit.edu	37	19	56549468	56549468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56549468C>T	uc002qmj.2	+	10	2693	c.2693C>T	c.(2692-2694)TCT>TTT	p.S898F	NLRP5_uc002qmi.2_Missense_Mutation_p.S879F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	898	LRR 7.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AGCCTGAAATCTCTGAGCCTG	0.547													9	35					0	0	0.000442599	0	0
NLRP5	126206	broad.mit.edu	37	19	56561926	56561926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56561926G>A	uc002qmj.2	+	12	3100	c.3100G>A	c.(3100-3102)GAA>AAA	p.E1034K	NLRP5_uc002qmi.2_Missense_Mutation_p.E1015K	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1034	LRR 10.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GGTCATGAGAGAACCATCTTG	0.517													9	31					0	0	0.00136819	0	0
GALP	85569	broad.mit.edu	37	19	56694574	56694574	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56694574G>A	uc002qmo.1	+	5	370	c.288G>A	c.(286-288)GAG>GAA	p.E96E	GALP_uc010eti.2_3'UTR	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	96					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		CCAAACCAGAGATTGGAGGTA	0.468													11	37					0	0	0.00185496	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701677	56701677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56701677C>T	uc010ygh.1	-	4	1007	c.1007G>A	c.(1006-1008)GGC>GAC	p.G336D		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	336					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GCCCGCAGGGCCTGGGGAATG	0.547													16	60					0	0	0.00074312	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734019	56734020	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56734019_56734020TC>AT	uc002qmq.2	-	4	845_846	c.679_680GA>AT	c.(679-681)GAA>ATA	p.E227I	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.E110I|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.E227I|ZSCAN5A_uc002qms.1_Missense_Mutation_p.E227I	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	227					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TTCCCTGTTTTCCTTCAGATCC	0.51													19	59					0	0	6.4e-05	0	0
ZNF582	147948	broad.mit.edu	37	19	56896043	56896043	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:56896043A>G	uc002qmz.1	-	5	902	c.743T>C	c.(742-744)GTT>GCT	p.V248A	ZNF582_uc002qmy.2_Missense_Mutation_p.V279A	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	248	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		ACCAGTATGAACTCTCTGATG	0.378													9	42					0	0	0.000274275	0	0
USP29	57663	broad.mit.edu	37	19	57640177	57640177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:57640177G>A	uc002qny.2	+	4	490	c.134G>A	c.(133-135)GGA>GAA	p.G45E		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	45					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTCAAATCTGGAAAATTTATA	0.358													6	42					0	0	0.00198382	0	0
USP29	57663	broad.mit.edu	37	19	57640373	57640373	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:57640373C>T	uc002qny.2	+	4	686	c.330C>T	c.(328-330)CCC>CCT	p.P110P		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	110					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CTCAGCAACCCATGAAATCTG	0.348													18	24					0	0	0.00074312	0	0
USP29	57663	broad.mit.edu	37	19	57642776	57642776	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:57642776G>A	uc002qny.2	+	4	3089	c.2733G>A	c.(2731-2733)GGG>GGA	p.G911G		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	911					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCCCTCAGGGGGAATACGAAG	0.468													5	77					0	0	0.00198382	0	0
ZNF549	256051	broad.mit.edu	37	19	58050249	58050249	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:58050249A>G	uc002qpb.1	+	4	2126	c.1877A>G	c.(1876-1878)TAT>TGT	p.Y626C	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Intron|ZNF549_uc002qpa.1_Missense_Mutation_p.Y613C	NM_153263	NP_694995	Q6P9A3	ZN549_HUMAN	zinc finger protein 549	626	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AACAAAAGATATTCCCTTGTC	0.418													19	34					0	0	0.00152264	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189533	58189533	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:58189533G>A	uc002qpu.2	+	5	1260	c.563_splice	c.e5-1	p.G188_splice		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4						telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TATTTTCACAGGATATGAAGA	0.373													5	46					0	0	0.00116845	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58190018	58190018	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:58190018C>T	uc002qpu.2	+	5	1744	c.1047C>T	c.(1045-1047)TTC>TTT	p.F349F		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	349	C2H2-type 2.				telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AAAAAGGCTTCTTCCAGATAT	0.443													20	46					0	0	0.000958276	0	0
ZNF586	54807	broad.mit.edu	37	19	58291138	58291138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:58291138C>T	uc002qqd.2	+	3	1369	c.1183C>T	c.(1183-1185)CAT>TAT	p.H395Y	ZNF587_uc002qqb.2_Intron|ZNF586_uc002qqe.2_3'UTR|ZNF586_uc010euh.2_Missense_Mutation_p.H352Y|ZNF586_uc002qqf.1_Intron	NM_017652	NP_060122	Q9NXT0	ZN586_HUMAN	zinc finger protein 586	395	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCAGAGAGTTCATACTGGAAT	0.438													8	57					0	0	0.000442599	0	0
ZNF606	80095	broad.mit.edu	37	19	58490297	58490297	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:58490297A>T	uc002qqw.2	-	7	2369	c.1751T>A	c.(1750-1752)ATT>AAT	p.I584N	ZNF606_uc010yhp.1_Missense_Mutation_p.I494N	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	584	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		CTGATGGGCAATAAGATGGGA	0.423													10	43					0	0	0.000442599	0	0
ZNF606	80095	broad.mit.edu	37	19	58490541	58490541	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:58490541G>A	uc002qqw.2	-	7	2125	c.1507C>T	c.(1507-1509)CAG>TAG	p.Q503*	ZNF606_uc010yhp.1_Nonsense_Mutation_p.Q413*	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	503	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		TGAGTCCTCTGATGTCCAATA	0.383													9	25					0	0	0.000274275	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565251	58565251	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:58565251G>A	uc002qrc.1	+	6	1306	c.1059G>A	c.(1057-1059)CGG>CGA	p.R353R		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	353					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		AAGCCCCCCGGAGCAAGGGCC	0.662													13	7					0	0	0.00244969	0	0
ZNF135	7694	broad.mit.edu	37	19	58578102	58578102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:58578102C>T	uc010yhq.1	+	5	382	c.286C>T	c.(286-288)CTT>TTT	p.L96F	ZNF135_uc002qre.2_Intron|ZNF135_uc002qrd.1_Intron|ZNF135_uc002qrf.2_Intron|ZNF135_uc002qrg.2_Missense_Mutation_p.L54F|ZNF135_uc010yhr.1_5'UTR	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	96					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		GTTTTTGCTTCTTTCAGACTT	0.388													6	48					0	0	0.00116845	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028308	59028308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr19:59028308G>A	uc002qtd.2	-	2	1025	c.733C>T	c.(733-735)CTC>TTC	p.L245F	ZBTB45_uc002qte.2_Missense_Mutation_p.L245F|ZBTB45_uc002qtf.2_Missense_Mutation_p.L245F	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	245					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		GCAGCAGTGAGGAAGCCAGCA	0.652											OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	112					0	0	0.000953801	0	0
TMEM18	129787	broad.mit.edu	37	2	669842	669842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:669842G>A	uc002qwl.2	-	4	336	c.242C>T	c.(241-243)TCG>TTG	p.S81L	TMEM18_uc002qwk.2_RNA	NM_152834	NP_690047	Q96B42	TMM18_HUMAN	transmembrane protein 18	81					cell migration	integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;5.27e-05)|all_epithelial(98;2.11e-06)|Ovarian(717;0.0253)		all cancers(51;1.95e-21)|Epithelial(75;9.47e-21)|OV - Ovarian serous cystadenocarcinoma(76;8.15e-18)|GBM - Glioblastoma multiforme(21;0.0285)		CTGGTATTTCGAAAATAATCT	0.368													17	15					0	0	0.000422831	0	0
PXDN	7837	broad.mit.edu	37	2	1651988	1651988	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:1651988C>T	uc002qxa.2	-	17	3628	c.3564G>A	c.(3562-3564)CTG>CTA	p.L1188L		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1188					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TCTCATTTTTCAGGTCCTCGA	0.562													22	89					0	0	0.00395357	0	0
MYT1L	23040	broad.mit.edu	37	2	1926476	1926476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:1926476C>T	uc002qxe.2	-	10	1892	c.1065G>A	c.(1063-1065)ATG>ATA	p.M355I	MYT1L_uc002qxd.2_Missense_Mutation_p.M355I|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	355					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GACGGATGTTCATGTTCTGCT	0.572													7	15					0	0	0.000274275	0	0
MYT1L	23040	broad.mit.edu	37	2	1983546	1983546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:1983546C>T	uc002qxe.2	-	6	831	c.4G>A	c.(4-6)GAG>AAG	p.E2K	MYT1L_uc002qxd.2_Missense_Mutation_p.E2K|MYT1L_uc002qxf.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	2					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GTGTCCACCTCCATCTGGGGA	0.607													4	7					0	0	0.00116845	0	0
CMPK2	129607	broad.mit.edu	37	2	7001333	7001333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:7001333G>A	uc002qyo.2	-	3	1083	c.974C>T	c.(973-975)TCT>TTT	p.S325F	CMPK2_uc010yis.1_Missense_Mutation_p.S325F|CMPK2_uc010ewv.2_Missense_Mutation_p.S325F	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	325					dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AATCACAGGAGATTTGGCAGA	0.299													18	50					0	0	0.00188189	0	0
PDIA6	10130	broad.mit.edu	37	2	10930854	10930854	+	Silent	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:10930854G>C	uc002rau.2	-	7	828	c.690C>G	c.(688-690)TCC>TCG	p.S230S	PDIA6_uc010yjg.1_Silent_p.S227S|PDIA6_uc002rav.2_Silent_p.S282S|PDIA6_uc010yjh.1_Silent_p.S235S|PDIA6_uc002raw.2_Silent_p.S278S	NM_005742	NP_005733	Q15084	PDIA6_HUMAN	protein disulfide isomerase A6 precursor	230	Thioredoxin 2.				cell redox homeostasis|glycerol ether metabolic process|protein folding	endoplasmic reticulum lumen|ER-Golgi intermediate compartment|melanosome|plasma membrane	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.149)|OV - Ovarian serous cystadenocarcinoma(76;0.15)		CCCCGTATCGGGAGGCCAGAA	0.468													3	56					0	0	6.4e-05	0	0
MSGN1	343930	broad.mit.edu	37	2	17997936	17997936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:17997936C>T	uc010yjt.1	+	1	151	c.151C>T	c.(151-153)CCA>TCA	p.P51S		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	51					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTCCCCGGCTCCATCGCTGGA	0.642													23	30					0	0	0.00278032	0	0
NT5C1B	93034	broad.mit.edu	37	2	18764140	18764140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:18764140G>A	uc002rcz.2	-	7	1299	c.1195C>T	c.(1195-1197)CAC>TAC	p.H399Y	NT5C1B_uc002rcy.2_Missense_Mutation_p.H399Y|NT5C1B_uc010exr.2_Missense_Mutation_p.H341Y|NT5C1B_uc010yju.1_Missense_Mutation_p.H339Y|NT5C1B_uc002rda.2_Missense_Mutation_p.H339Y|NT5C1B_uc010yjv.1_Missense_Mutation_p.H416Y|NT5C1B_uc010yjw.1_Missense_Mutation_p.H382Y|NT5C1B_uc010exs.2_Missense_Mutation_p.H401Y	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	399					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TTACCGTAGTGATTGACGCTG	0.413													26	40					0	0	0.00178596	0	0
APOB	338	broad.mit.edu	37	2	21225802	21225802	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:21225802G>A	uc002red.2	-	29	12620	c.12492C>T	c.(12490-12492)TTC>TTT	p.F4164F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4164					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGAGTCCCTGGAAACTGGCTT	0.473													88	90					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21228765	21228765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:21228765G>A	uc002red.2	-	26	11103	c.10975C>T	c.(10975-10977)CTT>TTT	p.L3659F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3659					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCAATGTCAAGGTGTGCCTTT	0.438													73	126					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21233705	21233705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:21233705C>T	uc002red.2	-	26	6163	c.6035G>A	c.(6034-6036)CGA>CAA	p.R2012Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2012					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGCCAGAGTTCGTCCAGTAAG	0.433													110	137					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21235262	21235262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:21235262G>A	uc002red.2	-	26	4606	c.4478C>T	c.(4477-4479)TCT>TTT	p.S1493F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1493					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATAGAACGAAGAGACTCTGAA	0.468													39	172					0	0	0.00195071	0	0
ITSN2	50618	broad.mit.edu	37	2	24507641	24507641	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:24507641G>A	uc002rfe.2	-	17	2193	c.1935C>T	c.(1933-1935)CTC>CTT	p.L645L	ITSN2_uc002rff.2_Intron|ITSN2_uc002rfg.2_Silent_p.L645L	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	645	Potential.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTTAAGTAAGAGGAAGAGGT	0.338													27	116					0	0	0.00209593	0	0
NCOA1	8648	broad.mit.edu	37	2	24916135	24916135	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:24916135C>T	uc002rfk.2	+	8	985	c.727C>T	c.(727-729)CTG>TTG	p.L243L	NCOA1_uc010eye.2_Silent_p.L243L|NCOA1_uc002rfi.2_Silent_p.L92L|NCOA1_uc002rfj.2_Silent_p.L243L|NCOA1_uc002rfl.2_Silent_p.L243L	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	243									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCAGTCATGTCTGATTTGTAT	0.393			T	PAX3	alveolar rhadomyosarcoma								14	73					0	0	0.00074312	0	0
NCOA1	8648	broad.mit.edu	37	2	24964782	24964782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:24964782C>T	uc002rfk.2	+	17	3691	c.3433C>T	c.(3433-3435)CCT>TCT	p.P1145S	NCOA1_uc010eye.2_Missense_Mutation_p.P1145S|NCOA1_uc002rfi.2_Missense_Mutation_p.P994S|NCOA1_uc002rfj.2_Missense_Mutation_p.P1145S|NCOA1_uc002rfl.2_Missense_Mutation_p.P1145S|NCOA1_uc010eyf.2_Missense_Mutation_p.P38S	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	1145									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAACAACCTCCCTCCCTCATC	0.527			T	PAX3	alveolar rhadomyosarcoma								9	32					0	0	0.000673444	0	0
POMC	5443	broad.mit.edu	37	2	25384096	25384096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:25384096G>A	uc002rfy.1	-	4	921	c.658C>T	c.(658-660)CCC>TCC	p.P220S	POMC_uc002rfz.1_Missense_Mutation_p.P220S|POMC_uc002rga.1_Missense_Mutation_p.P220S	NM_001035256	NP_001030333	P01189	COLI_HUMAN	proopiomelanocortin preproprotein	220					cell-cell signaling|cellular nitrogen compound metabolic process|cellular pigmentation|generation of precursor metabolites and energy|hormone biosynthetic process|negative regulation of tumor necrosis factor production|neuropeptide signaling pathway|peptide hormone processing|positive regulation of transcription from RNA polymerase II promoter|regulation of appetite|regulation of blood pressure	extracellular space|stored secretory granule	hormone activity|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Hydrocortisone(DB00741)|Loperamide(DB00836)|Trilostane(DB01108)	ATCCTGTAGGGGCCCTCGTCC	0.697													15	16					0	0	0.000958276	0	0
ASXL2	55252	broad.mit.edu	37	2	26029195	26029195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:26029195G>A	uc002rgs.2	-	3	376	c.155C>T	c.(154-156)CCT>CTT	p.P52L		NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	52					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCATGCAAGAGGAGAAGTCCC	0.373													10	13					0	0	0.00136819	0	0
AGBL5	60509	broad.mit.edu	37	2	27280199	27280199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:27280199G>A	uc002rie.2	+	9	1781	c.1564G>A	c.(1564-1566)GGA>AGA	p.G522R	AGBL5_uc002rid.2_Missense_Mutation_p.G522R|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	522					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTACAACACTGGACGCTCAGT	0.522													25	23					0	0	0.00278032	0	0
IFT172	26160	broad.mit.edu	37	2	27676352	27676352	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:27676352G>A	uc002rku.2	-	35	3901	c.3850C>T	c.(3850-3852)CGA>TGA	p.R1284*	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1284	TPR 10.				cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TCCCAGTGTCGAGCTTGTTCC	0.582													12	13					0	0	0.000978159	0	0
IFT172	26160	broad.mit.edu	37	2	27680767	27680767	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:27680767G>C	uc002rku.2	-	28	3103	c.3052C>G	c.(3052-3054)CGC>GGC	p.R1018G		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1018					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					CCTACCAGGCGGATCATGTCA	0.507													9	36					0	0	0.000274275	0	0
FNDC4	64838	broad.mit.edu	37	2	27715583	27715584	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:27715583_27715584CC>TT	uc002rkx.2	-	6	1024_1025	c.618_619GG>AA	c.(616-621)AAGGGA>AAAAGA	p.G207R		NM_022823	NP_073734	Q9H6D8	FNDC4_HUMAN	fibronectin type III domain containing 4	207	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(172;0.155)					GGCCCCTTTCCCTTCTCCTTGG	0.55													24	48					0	0	6.4e-05	0	0
PLB1	151056	broad.mit.edu	37	2	28752259	28752259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:28752259C>T	uc002rmb.1	+	7	401	c.401C>T	c.(400-402)CCC>CTC	p.P134L	PLB1_uc010ezj.1_Missense_Mutation_p.P134L	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	134	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					AGAGTCATACCCCACGATGGT	0.478													15	34					0	0	0.00074312	0	0
EHD3	30845	broad.mit.edu	37	2	31484508	31484508	+	Missense_Mutation	SNP	G	A	A	rs138474287		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:31484508G>A	uc002rnu.2	+	5	1617	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	EHD3_uc010ymt.1_Intron	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	337					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					CAACCTGGCCGAGATCTATGG	0.562													15	45					0	0	0.000566183	0	0
NLRC4	58484	broad.mit.edu	37	2	32477592	32477592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:32477592C>T	uc002roi.2	-	3	404	c.158G>A	c.(157-159)GGG>GAG	p.G53E	NLRC4_uc002roj.1_Missense_Mutation_p.G53E|NLRC4_uc010ezt.1_Missense_Mutation_p.G53E	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	53	CARD.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GTGAATGATCCCTCTAGCAGC	0.403													13	123					0	0	0.00244969	0	0
HEATR5B	54497	broad.mit.edu	37	2	37276944	37276944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:37276944G>A	uc002rpp.1	-	18	2644	c.2548C>T	c.(2548-2550)CGT>TGT	p.R850C		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	850	HEAT 1.						binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GCAGATTTACGAACTTCCTCA	0.398													8	19					0	0	0.000274275	0	0
EIF2AK2	5610	broad.mit.edu	37	2	37334419	37334419	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:37334419A>G	uc010ynh.1	-	17	2210	c.1653T>C	c.(1651-1653)TGT>TGC	p.C551C	EIF2AK2_uc010fab.1_Silent_p.C510C|EIF2AK2_uc010yng.1_Silent_p.C508C|EIF2AK2_uc010fac.2_Silent_p.C551C	NM_002759	NP_002750	P19525	E2AK2_HUMAN	eukaryotic translation initiation factor 2-alpha	551					evasion by virus of host immune response|modulation by virus of host cellular process|negative regulation of osteoblast proliferation|protein autophosphorylation|response to virus|viral infectious cycle	cytosol	ATP binding|double-stranded RNA binding|eukaryotic translation initiation factor 2alpha kinase activity|protein binding|protein phosphatase type 2A regulator activity			ovary(2)|lung(2)|pancreas(1)	5		all_hematologic(82;0.248)				AAGGGCTCTAACATGTGTGTC	0.358													24	33					0	0	0.000720815	0	0
Unknown	0	broad.mit.edu	37	2	38709244	38709244	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:38709244G>A	uc002rqu.1	+	1	319	c.252G>A	c.(250-252)GGG>GGA	p.G84G						SubName: Full=RPLP0 protein;																		ATATCTGGGGGAATGTGGGCT	0.572													11	15					0	0	0.00185496	0	0
Unknown	0	broad.mit.edu	37	2	38709350	38709350	+	Missense_Mutation	SNP	G	A	A	rs11548363		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:38709350G>A	uc002rqu.1	+	1	425	c.358G>A	c.(358-360)GAA>AAA	p.E120K						SubName: Full=RPLP0 protein;																		TGCCCCATGTGAAGTCACTGT	0.557													6	8					0	0	0.00116845	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656528	40656528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:40656528G>A	uc002rrx.2	-	1	917	c.893C>T	c.(892-894)TCT>TTT	p.S298F	SLC8A1_uc002rry.2_Missense_Mutation_p.S298F|SLC8A1_uc002rrz.2_Missense_Mutation_p.S298F|SLC8A1_uc002rsa.2_Missense_Mutation_p.S298F|SLC8A1_uc002rsd.3_Missense_Mutation_p.S298F|SLC8A1_uc002rsb.1_Missense_Mutation_p.S298F|SLC8A1_uc010fan.1_Missense_Mutation_p.S298F|SLC8A1_uc002rsc.1_Missense_Mutation_p.S298F	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	298	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TTCAACATGAGAATTGACCAC	0.453													8	57					0	0	0.00307968	0	0
EML4	27436	broad.mit.edu	37	2	42488356	42488356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:42488356C>T	uc002rsi.2	+	4	696	c.434C>T	c.(433-435)CCT>CTT	p.P145L	EML4_uc002rsh.3_Missense_Mutation_p.P145L|EML4_uc010fap.2_Intron	NM_019063	NP_061936	Q9HC35	EMAL4_HUMAN	echinoderm microtubule associated protein like 4	145					microtubule-based process|mitosis	cytoplasm|microtubule	protein binding		EML4/ALK(246)	lung(246)|ovary(2)|central_nervous_system(1)|skin(1)	250						CGAGCATCACCTTCTCCCCAG	0.333			T	ALK	NSCLC								12	45					0	0	0.00136819	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43973083	43973083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:43973083C>T	uc010yny.1	+	24	3717	c.3634C>T	c.(3634-3636)CGT>TGT	p.R1212C		NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	1212	FERM.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AAGGACTGTTCGTCTGACATA	0.378													112	136					0	0	0.00361006	0	0
ATP6V1E2	90423	broad.mit.edu	37	2	46739428	46739428	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:46739428G>A	uc002ruy.2	-	2	1537	c.423C>T	c.(421-423)CTC>CTT	p.L141L	ATP6V1E2_uc002ruz.2_Silent_p.L141L	NM_080653	NP_542384	Q96A05	VATE2_HUMAN	ATPase, H+ transporting, lysosomal 31kDa, V1	141					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain	proton-transporting ATPase activity, rotational mechanism			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.151)			CCACCAGGAGGAGGTCTTGTG	0.547													8	50					0	0	0.00307968	0	0
TTC7A	57217	broad.mit.edu	37	2	47288062	47288062	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:47288062G>A	uc002rvo.2	+	19	2675	c.2307G>A	c.(2305-2307)AAG>AAA	p.K769K	TTC7A_uc002rvm.2_Silent_p.K735K|TTC7A_uc010fbb.2_Silent_p.K793K|TTC7A_uc010fbc.2_Silent_p.K415K|TTC7A_uc002rvp.2_Silent_p.K650K|TTC7A_uc002rvq.2_Silent_p.K509K|TTC7A_uc002rvr.2_Silent_p.K218K	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	769	TPR 7.						binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			AGCTGTACAAGGAGGCGCTCA	0.652													7	11					0	0	0.00307968	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48896967	48896967	+	Missense_Mutation	SNP	G	A	A	rs148943401	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:48896967G>A	uc010yol.1	+	6	3103	c.3056G>A	c.(3055-3057)GGA>GAA	p.G1019E	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.G1066E|GTF2A1L_uc002rws.1_Missense_Mutation_p.G362E|GTF2A1L_uc010yom.1_Missense_Mutation_p.G328E|GTF2A1L_uc002rwt.2_Missense_Mutation_p.G362E	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	1019					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			GAAGAAATAGGAAGTACAAGA	0.383													38	61					0	0	0.00375469	0	0
NRXN1	9378	broad.mit.edu	37	2	50850507	50850507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:50850507C>T	uc010fbq.2	-	6	2655	c.1178G>A	c.(1177-1179)GGA>GAA	p.G393E	NRXN1_uc002rxb.3_Missense_Mutation_p.G40E|NRXN1_uc002rxe.3_Missense_Mutation_p.G360E|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ATTAAACTTTCCATTCACAGG	0.458													10	21					0	0	0.000673444	0	0
TSPYL6	388951	broad.mit.edu	37	2	54482763	54482763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:54482763C>T	uc002rxr.2	-	1	647	c.526G>A	c.(526-528)GAA>AAA	p.E176K	ACYP2_uc002rxq.3_Intron	NM_001003937	NP_001003937	Q8N831	TSYL6_HUMAN	TSPY-like 6	176					nucleosome assembly	nucleus					0						GCTCTGTTTTCTTCCGCCACG	0.617													18	31					0	0	0.00188189	0	0
C2orf63	130162	broad.mit.edu	37	2	55449462	55449462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:55449462C>T	uc002ryi.2	-	3	432	c.86G>A	c.(85-87)AGA>AAA	p.R29K	C2orf63_uc002ryh.2_5'UTR|C2orf63_uc002ryj.2_Intron	NM_152385	NP_689598	Q8NHS4	CB063_HUMAN	hypothetical protein LOC130162 isoform 1	29							binding			ovary(2)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(58;0.179)|Lung(47;0.189)			AATTATGTATCTTTGCACACT	0.348													31	110					0	0	0.00327116	0	0
PUS10	150962	broad.mit.edu	37	2	61194636	61194636	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:61194636C>T	uc010fci.2	-	6	675	c.615_splice	c.e6+1	p.K205_splice	PUS10_uc002sao.2_Splice_Site_p.K205_splice|PUS10_uc010ypk.1_Splice_Site_p.R3_splice	NM_144709	NP_653310	Q3MIT2	PUS10_HUMAN	pseudouridylate synthase 10						pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(2)|large_intestine(1)|kidney(1)	4			LUSC - Lung squamous cell carcinoma(5;1.56e-06)|Lung(5;2.48e-05)|Epithelial(17;0.113)			TGACCCAATACCTTTCCATCA	0.363													63	71					0	0	0.00361006	0	0
COMMD1	150684	broad.mit.edu	37	2	62132934	62132934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:62132934C>T	uc002sbp.2	+	1	132	c.121C>T	c.(121-123)CCA>TCA	p.P41S		NM_152516	NP_689729	Q8N668	COMD1_HUMAN	MURR1	41					copper ion homeostasis|negative regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|regulation of proteasomal ubiquitin-dependent protein catabolic process	cell junction|Cul2-RING ubiquitin ligase complex|cytoplasm|nucleolus	copper ion binding|protein homodimerization activity			ovary(1)	1	Lung NSC(7;0.035)|all_lung(7;0.0691)		LUSC - Lung squamous cell carcinoma(7;4.73e-07)|Epithelial(17;0.0216)|all cancers(80;0.0934)			CCAGCTATATCCAGAGGTGCC	0.597													6	42					0	0	0.00198382	0	0
SLC1A4	6509	broad.mit.edu	37	2	65216839	65216839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:65216839G>A	uc010yqa.1	+	1	384	c.62G>A	c.(61-63)GGG>GAG	p.G21E	SLC1A4_uc010ypy.1_Intron|SLC1A4_uc010ypz.1_Intron|SLC1A4_uc010fcv.2_Missense_Mutation_p.G21E	NM_003038	NP_003029	P43007	SATT_HUMAN	solute carrier family 1, member 4 isoform 1	21	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cognition|synaptic transmission, glutamatergic	intermediate filament|melanosome	chloride channel activity|L-alanine transmembrane transporter activity|L-cystine transmembrane transporter activity|L-hydroxyproline transmembrane transporter activity|L-proline transmembrane transporter activity|L-serine transmembrane transporter activity|L-threonine transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(1)	1					L-Alanine(DB00160)	CCTGCGGCCGGGCCCGGAGCT	0.736													4	6					0	0	0.000602214	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69014995	69014995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:69014995G>A	uc002seu.2	+	4	737	c.373G>A	c.(373-375)GGA>AGA	p.G125R	ARHGAP25_uc010yqk.1_Missense_Mutation_p.G99R|ARHGAP25_uc010fdg.2_Missense_Mutation_p.G125R|ARHGAP25_uc010yql.1_Intron|ARHGAP25_uc002sev.2_Missense_Mutation_p.G118R|ARHGAP25_uc002sew.2_Missense_Mutation_p.G118R|ARHGAP25_uc002sex.2_Missense_Mutation_p.G118R|ARHGAP25_uc010fdh.1_RNA	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	125	PH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						GAATCGCATGGGACAGGACTC	0.522													16	56					0	0	0.00121646	0	0
AAK1	22848	broad.mit.edu	37	2	69736437	69736437	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:69736437G>A	uc002sfp.2	-	14	2437	c.1932C>T	c.(1930-1932)GTC>GTT	p.V644V	AAK1_uc010fdk.2_Silent_p.V644V|AAK1_uc010yqm.1_Silent_p.V645V	NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	644						coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						GGACCCCAAAGACTGCACTGT	0.547													10	34					0	0	0.00136819	0	0
DYSF	8291	broad.mit.edu	37	2	71708023	71708023	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:71708023G>A	uc002sie.2	+	2	475	c.99G>A	c.(97-99)AAG>AAA	p.K33K	DYSF_uc010feg.2_Silent_p.K33K|DYSF_uc010feh.2_Silent_p.K33K|DYSF_uc002sig.3_Silent_p.K33K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.K33K|DYSF_uc010fef.2_Silent_p.K33K|DYSF_uc010fei.2_Silent_p.K33K|DYSF_uc010fek.2_Silent_p.K34K|DYSF_uc010fej.2_Silent_p.K34K|DYSF_uc010fel.2_Silent_p.K34K|DYSF_uc010feo.2_Silent_p.K34K|DYSF_uc010fem.2_Silent_p.K34K|DYSF_uc010fen.2_Silent_p.K34K|DYSF_uc002sif.2_Silent_p.K34K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	33	Cytoplasmic (Potential).|C2 1.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGGTGAAGAAGAGAACCAAAG	0.483													4	17					0	0	0.000274275	0	0
DYSF	8291	broad.mit.edu	37	2	71783145	71783145	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:71783145G>A	uc002sie.2	+	22	2482	c.2106G>A	c.(2104-2106)ACG>ACA	p.T702T	DYSF_uc010feg.2_Silent_p.T733T|DYSF_uc010feh.2_Silent_p.T688T|DYSF_uc002sig.3_Silent_p.T688T|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.T702T|DYSF_uc010fef.2_Silent_p.T719T|DYSF_uc010fei.2_Silent_p.T719T|DYSF_uc010fek.2_Silent_p.T720T|DYSF_uc010fej.2_Silent_p.T689T|DYSF_uc010fel.2_Silent_p.T689T|DYSF_uc010feo.2_Silent_p.T734T|DYSF_uc010fem.2_Silent_p.T703T|DYSF_uc010fen.2_Silent_p.T720T|DYSF_uc002sif.2_Silent_p.T703T	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	702	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AGTGCTCCACGGAGGACGTGG	0.667													6	5					0	0	0.00198382	0	0
DYSF	8291	broad.mit.edu	37	2	71871175	71871175	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:71871175G>A	uc002sie.2	+	41	4867	c.4491G>A	c.(4489-4491)AAG>AAA	p.K1497K	DYSF_uc010feg.2_Silent_p.K1528K|DYSF_uc010feh.2_Silent_p.K1504K|DYSF_uc002sig.3_Silent_p.K1483K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.K1518K|DYSF_uc010fef.2_Silent_p.K1535K|DYSF_uc010fei.2_Silent_p.K1514K|DYSF_uc010fek.2_Silent_p.K1515K|DYSF_uc010fej.2_Silent_p.K1505K|DYSF_uc010fel.2_Silent_p.K1484K|DYSF_uc010feo.2_Silent_p.K1529K|DYSF_uc010fem.2_Silent_p.K1519K|DYSF_uc010fen.2_Silent_p.K1536K|DYSF_uc002sif.2_Silent_p.K1498K|DYSF_uc010yqy.1_Silent_p.K378K|DYSF_uc010yqz.1_Silent_p.K258K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1497	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACCTGGAGAAGGATTTTGACA	0.512													7	5					0	0	0.000442599	0	0
EMX1	2016	broad.mit.edu	37	2	73145330	73145330	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:73145330C>G	uc002sin.1	+	1	727	c.349C>G	c.(349-351)CTC>GTC	p.L117V	EMX1_uc002sim.1_Intron	NM_004097	NP_004088	Q04741	EMX1_HUMAN	empty spiracles homolog 1	84						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGGGCCCGAGCTCGTGTTCCC	0.622													4	5					0	0	0.00116845	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73303160	73303160	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:73303160G>A	uc002siu.3	-	4	1960	c.1719C>T	c.(1717-1719)GCC>GCT	p.A573A	RAB11FIP5_uc002sis.3_5'UTR|RAB11FIP5_uc002sit.3_Silent_p.A495A	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	573					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						CAGCCTGGGGGGCCTGGGTCA	0.597													14	77					0	0	0.00185496	0	0
ALMS1	7840	broad.mit.edu	37	2	73651805	73651805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:73651805C>T	uc002sje.1	+	6	1126	c.1015C>T	c.(1015-1017)CGT>TGT	p.R339C	ALMS1_uc002sjf.1_Missense_Mutation_p.R296C	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	338					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AGACTGTGATCGTTATGATGA	0.378													6	28					0	0	0.000274275	0	0
ALMS1	7840	broad.mit.edu	37	2	73677009	73677009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:73677009G>A	uc002sje.1	+	10	3469	c.3358G>A	c.(3358-3360)GAG>AAG	p.E1120K	ALMS1_uc002sjf.1_Missense_Mutation_p.E1076K|ALMS1_uc002sjg.2_Missense_Mutation_p.E506K|ALMS1_uc002sjh.1_Missense_Mutation_p.E506K	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1118	34 X 47 AA approximate tandem repeat.|13.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TCTGCCTAAAGAGGCTCTGAA	0.468													10	49					0	0	0.000978159	0	0
TPRKB	51002	broad.mit.edu	37	2	73957738	73957738	+	Silent	SNP	C	T	T	rs144417465	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:73957738C>T	uc002sjn.2	-	4	501	c.390G>A	c.(388-390)CAG>CAA	p.Q130Q	TPRKB_uc002sjm.2_Silent_p.Q169Q|TPRKB_uc002sjl.2_Silent_p.Q97Q|TPRKB_uc002sjo.2_Silent_p.Q130Q|TPRKB_uc010yrm.1_Silent_p.Q97Q	NM_016058	NP_057142	Q9Y3C4	TPRKB_HUMAN	TP53RK binding protein	130					protein catabolic process	cytosol|nucleus	protein kinase binding			ovary(1)|skin(1)	2						TCAGAGAAACCTGATGACCTT	0.313													33	49					0	0	0.00283554	0	0
C2orf78	388960	broad.mit.edu	37	2	74041042	74041042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:74041042C>T	uc002sjr.1	+	2	657	c.536C>T	c.(535-537)CCA>CTA	p.P179L		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	179										ovary(2)	2						CCTCTGTATCCATCACTATCT	0.453													8	12					0	0	0.00307968	0	0
TET3	200424	broad.mit.edu	37	2	74274192	74274192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:74274192C>T	uc002skb.3	+	1	743	c.743C>T	c.(742-744)CCC>CTC	p.P248L	TET3_uc010fez.1_Missense_Mutation_p.P248L	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	248							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCTTCTTGCCCCCTTCCTGAG	0.592													5	25					0	0	0.000274275	0	0
TET3	200424	broad.mit.edu	37	2	74274685	74274685	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:74274685C>T	uc002skb.3	+	1	1236	c.1236C>T	c.(1234-1236)TCC>TCT	p.S412S	TET3_uc010fez.1_Silent_p.S412S	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	412							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						ACGACACCTCCTTCCCTGCTC	0.622													6	12					0	0	0.00307968	0	0
TET3	200424	broad.mit.edu	37	2	74275145	74275145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:74275145C>T	uc002skb.3	+	1	1696	c.1696C>T	c.(1696-1698)CCC>TCC	p.P566S	TET3_uc010fez.1_Missense_Mutation_p.P566S	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	566							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TGGCCCTCTTCCCCCTGCCGA	0.612													8	23					0	0	0.000442599	0	0
SLC4A5	57835	broad.mit.edu	37	2	74462304	74462304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:74462304G>A	uc002sko.1	-	17	2359	c.2357C>T	c.(2356-2358)TCC>TTC	p.S786F	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.S786F|SLC4A5_uc010ffc.1_Missense_Mutation_p.S786F|SLC4A5_uc002skp.1_Intron|SLC4A5_uc002sks.1_Intron	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	786	Helical; (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						CATCAGGATGGAGAAAACAAT	0.537													8	12					0	0	0.000274275	0	0
CCDC142	84865	broad.mit.edu	37	2	74708478	74708478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:74708478G>A	uc002slr.2	-	3	1523	c.1130C>T	c.(1129-1131)TCA>TTA	p.S377L	TTC31_uc002sls.2_5'Flank|TTC31_uc010yrv.1_5'Flank|TTC31_uc002slt.2_5'Flank|TTC31_uc002slu.2_5'Flank|CCDC142_uc002slo.2_RNA|CCDC142_uc002slq.2_Missense_Mutation_p.S377L|CCDC142_uc002slp.2_Missense_Mutation_p.S377L	NM_032779	NP_116168	Q17RM4	CC142_HUMAN	coiled-coil domain containing 142	377										central_nervous_system(1)	1						CCCAAGAGCTGATCCCAAGGC	0.572													13	32					0	0	0.00316338	0	0
HK2	3099	broad.mit.edu	37	2	75108954	75108954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:75108954C>T	uc002snd.2	+	11	3613	c.1687C>T	c.(1687-1689)CCG>TCG	p.P563S		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	563	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						CTACGCCATCCCGCAGGAGGT	0.632													4	18					0	0	0.000602214	0	0
REG1B	5968	broad.mit.edu	37	2	79314026	79314026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:79314026G>A	uc002sny.2	-	3	207	c.95C>T	c.(94-96)CCC>CTC	p.P32L	REG1B_uc010ffv.1_Missense_Mutation_p.P32L|REG1B_uc010ffw.2_Missense_Mutation_p.P32L	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	32					cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						GCTGATTCGGGGATTAGGCAG	0.493													9	37					0	0	0.00244969	0	0
LRRTM1	347730	broad.mit.edu	37	2	80529539	80529539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:80529539C>T	uc002sok.1	-	2	1676	c.1406G>A	c.(1405-1407)AGG>AAG	p.R469K	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	469	Cytoplasmic (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						CTTTTGCTTCCTGCGCTGCGT	0.537										HNSCC(69;0.2)			5	28					0	0	0.000602214	0	0
LRRTM1	347730	broad.mit.edu	37	2	80529998	80529998	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:80529998C>T	uc002sok.1	-	2	1217	c.947G>A	c.(946-948)TGG>TAG	p.W316*	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	316	LRRCT.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						CCCGCAATCCCACAGGTTCCC	0.627										HNSCC(69;0.2)			7	10					0	0	0.00198382	0	0
CTNNA2	1496	broad.mit.edu	37	2	80835355	80835355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:80835355G>A	uc010ysh.1	+	16	2347	c.2342G>A	c.(2341-2343)CGA>CAA	p.R781Q	CTNNA2_uc010yse.1_Missense_Mutation_p.R781Q|CTNNA2_uc010ysf.1_Missense_Mutation_p.R781Q|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysi.1_Missense_Mutation_p.R413Q|CTNNA2_uc010ysj.1_Missense_Mutation_p.R110Q	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	781					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TACCTTCAACGAATTGCCTTG	0.413													8	20					0	0	0.00307968	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518146	84518146	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:84518146G>A	uc010ffz.1	+	1	341	c.204G>A	c.(202-204)AAG>AAA	p.K68K		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						AGGTTGGAAAGTTGGCTGCAA	0.478													7	55					0	0	0.000442599	0	0
IMMT	10989	broad.mit.edu	37	2	86372002	86372002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:86372002G>A	uc002sqz.3	-	15	2054	c.1666C>T	c.(1666-1668)CAT>TAT	p.H556Y	IMMT_uc002sqy.3_Missense_Mutation_p.H297Y|IMMT_uc002srb.3_Missense_Mutation_p.H545Y|IMMT_uc002sra.3_Missense_Mutation_p.H555Y|IMMT_uc010ytd.1_Missense_Mutation_p.H544Y|IMMT_uc010yte.1_Missense_Mutation_p.H509Y	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	556	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						GCAACTGCATGGCCTACAAAG	0.438													4	42					0	0	0.000602214	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95515041	95515041	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:95515041G>A	uc010fhp.2	-	4		c.410C>T				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATAAAAGTGGGGTATTACTGT	0.333													27	106					0	0	0.001512	0	0
ANKRD36B	57730	broad.mit.edu	37	2	98195377	98195377	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:98195377C>T	uc010yvc.1	-	5	967	c.687G>A	c.(685-687)GAG>GAA	p.E229E	ANKRD36B_uc010yve.1_RNA|ANKRD36B_uc010fif.2_Intron	NM_025190	NP_079466	Q8N2N9	AN36B_HUMAN	ankyrin repeat domain 36B	229											0						ACACTCTATTCTCAGCCTCAC	0.333													30	62					0	0	0.00327116	0	0
VWA3B	200403	broad.mit.edu	37	2	98852918	98852918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:98852918G>A	uc002syo.2	+	18	2758	c.2494G>A	c.(2494-2496)GGA>AGA	p.G832R	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.G351R|VWA3B_uc002sym.2_Missense_Mutation_p.G832R|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.G489R|VWA3B_uc002syp.1_Missense_Mutation_p.G224R|VWA3B_uc002syq.1_Missense_Mutation_p.G108R|VWA3B_uc002syr.1_Missense_Mutation_p.G149R|VWA3B_uc010fih.1_5'Flank	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	832										ovary(3)|large_intestine(2)|skin(1)	6						GACGCGAGAAGGAAGCCAGGT	0.423													27	31					0	0	0.000720815	0	0
VWA3B	200403	broad.mit.edu	37	2	98853107	98853107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:98853107G>A	uc002syo.2	+	19	2851	c.2587G>A	c.(2587-2589)GAT>AAT	p.D863N	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.D382N|VWA3B_uc002sym.2_Missense_Mutation_p.D863N|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.D520N|VWA3B_uc002syp.1_Missense_Mutation_p.D255N|VWA3B_uc002syq.1_Missense_Mutation_p.D139N|VWA3B_uc002syr.1_Missense_Mutation_p.D180N|VWA3B_uc010fih.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	863										ovary(3)|large_intestine(2)|skin(1)	6						CACCCTCATGGATGCCTTGTC	0.483													26	68					0	0	0.000720815	0	0
INPP4A	3631	broad.mit.edu	37	2	99169312	99169312	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:99169312C>T	uc002syy.2	+	15	1635	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I	INPP4A_uc010yvj.1_Silent_p.I414I|INPP4A_uc010yvk.1_Silent_p.I414I|INPP4A_uc002syx.2_Silent_p.I409I|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	414					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						CCAAGGAGATCATCGCCCAGA	0.512													6	13					0	0	0.00307968	0	0
C2orf55	343990	broad.mit.edu	37	2	99412621	99412621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:99412621C>T	uc002szf.1	-	9	3005	c.2711G>A	c.(2710-2712)GGG>GAG	p.G904E		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	904											0						TCTTTGCAGCCCCTCCTTGAA	0.488													54	68					0	0	0.00361006	0	0
C2orf15	150590	broad.mit.edu	37	2	99767217	99767217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:99767217G>A	uc002szk.2	+	4	697	c.298G>A	c.(298-300)GGA>AGA	p.G100R	TSGA10_uc002szi.3_Intron|MRPL30_uc002szl.1_Intron	NM_144706	NP_653307	Q8WU43	CB015_HUMAN	hypothetical protein LOC150590	100											0						GACTGGCACAGGATCTCTTTC	0.393													26	48					0	0	0.001512	0	0
AFF3	3899	broad.mit.edu	37	2	100625353	100625353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:100625353C>T	uc002tag.2	-	4	331	c.95G>A	c.(94-96)CGA>CAA	p.R32Q	AFF3_uc002taf.2_Missense_Mutation_p.R57Q|AFF3_uc010fiq.1_Missense_Mutation_p.R32Q|AFF3_uc010yvr.1_Missense_Mutation_p.R186Q|AFF3_uc002tah.1_Missense_Mutation_p.R57Q|AFF3_uc010fir.1_Missense_Mutation_p.R109Q|AFF3_uc002tai.2_5'Flank	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	32					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TCTTCTTTCTCGTTCTTTCCT	0.393													8	17					0	0	0.000274275	0	0
NMS	129521	broad.mit.edu	37	2	101089982	101089982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:101089982C>T	uc002tan.1	+	3	171	c.164C>T	c.(163-165)CCT>CTT	p.P55L		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	55					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						CAGTGGGCACCTCTTTCTCGC	0.239													11	52					0	0	0.00244969	0	0
IL1RL2	8808	broad.mit.edu	37	2	102805703	102805703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:102805703G>A	uc002tbs.2	+	3	352	c.226G>A	c.(226-228)GAC>AAC	p.D76N	IL1RL2_uc002tbt.2_Intron	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	76	Extracellular (Potential).|Ig-like C2-type 1.				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						AATTCACCAGGACGAGACTTG	0.393													12	18					0	0	0.00185496	0	0
IL18RAP	8807	broad.mit.edu	37	2	103040388	103040388	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:103040388C>G	uc002tbx.2	+	4	672	c.188C>G	c.(187-189)TCA>TGA	p.S63*	IL18RAP_uc010fiz.2_Intron	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	63	Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						AATCGACTCTCACCAAAACAA	0.438													10	14					0	0	0.000442599	0	0
SLC9A2	6549	broad.mit.edu	37	2	103318920	103318920	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:103318920C>T	uc002tca.2	+	9	1946	c.1804C>T	c.(1804-1806)CGA>TGA	p.R602*		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	602	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TGATGAAATTCGAGAACTCTT	0.328													30	105					0	0	0.000953801	0	0
MFSD9	84804	broad.mit.edu	37	2	103340299	103340300	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:103340299_103340300GG>AA	uc002tcb.2	-	5	564_565	c.496_497CC>TT	c.(496-498)CCG>TTG	p.P166L	MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	166					transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						GATTACAAGCGGCCGTTCCTTC	0.495													13	45					0	0	6.4e-05	0	0
GPR45	11250	broad.mit.edu	37	2	105859087	105859087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:105859087G>A	uc002tco.1	+	1	888	c.772G>A	c.(772-774)GAC>AAC	p.D258N		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	258	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						GGTCAGCGTGGACTTGAGCTT	0.652													33	51					0	0	0.000953801	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459876	107459876	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:107459876C>T	uc002tdq.2	-	2	677	c.558G>A	c.(556-558)TTG>TTA	p.L186L	ST6GAL2_uc002tdr.2_Silent_p.L186L|ST6GAL2_uc002tds.3_Silent_p.L186L	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	186	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CGCCCTCCTCCAACACGTGGC	0.652													13	24					0	0	0.00185496	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459924	107459924	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:107459924C>T	uc002tdq.2	-	2	629	c.510G>A	c.(508-510)AGG>AGA	p.R170R	ST6GAL2_uc002tdr.2_Silent_p.R170R|ST6GAL2_uc002tds.3_Silent_p.R170R	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	170	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TCACCCGCCTCCTCTGGACCT	0.667													6	51					0	0	0.00198382	0	0
RGPD4	285190	broad.mit.edu	37	2	108477238	108477238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:108477238C>T	uc010ywk.1	+	13	1857	c.1775C>T	c.(1774-1776)TCT>TTT	p.S592F	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	592	TPR 2.				intracellular transport		binding			skin(2)	2						GGTCTTAATTCTTTTTATGAT	0.323													34	141					0	0	0.00148497	0	0
RGPD4	285190	broad.mit.edu	37	2	108487579	108487579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:108487579C>T	uc010ywk.1	+	20	3201	c.3119C>T	c.(3118-3120)CCA>CTA	p.P1040L	RGPD4_uc002tdu.2_Missense_Mutation_p.P227L|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1040	RanBD1 1.				intracellular transport		binding			skin(2)	2						CATTTTGAACCAGTAGTTCAA	0.388													40	158					0	0	0.00361006	0	0
SLC5A7	60482	broad.mit.edu	37	2	108614293	108614294	+	Splice_Site	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:108614293_108614294GG>TT	uc002tdv.2	+	5	725	c.449_splice	c.e5-1	p.G150_splice	SLC5A7_uc010ywm.1_Splice_Site|SLC5A7_uc010fjj.2_Splice_Site_p.G150_splice|SLC5A7_uc010ywn.1_Splice_Site_p.G37_splice	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),						acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	GTTTGTTTCAGGAGCCACCATC	0.436													11	264					0	0	6.4e-05	0	0
SULT1C3	442038	broad.mit.edu	37	2	108863729	108863729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:108863729C>T	uc010ywo.1	+	1	79	c.79C>T	c.(79-81)CCT>TCT	p.P27S		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	27						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						AGATGGAGTCCCTACGTTGAT	0.418													11	43					0	0	0.00136819	0	0
CCDC138	165055	broad.mit.edu	37	2	109463278	109463278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:109463278C>T	uc002ten.1	+	12	1468	c.1408C>T	c.(1408-1410)CCA>TCA	p.P470S	CCDC138_uc002teo.1_Missense_Mutation_p.P470S|CCDC138_uc002tep.1_Missense_Mutation_p.P154S|CCDC138_uc010fjm.1_Missense_Mutation_p.P154S	NM_144978	NP_659415	Q96M89	CC138_HUMAN	coiled-coil domain containing 138	470											0						GGATAATTCTCCACAGCATTC	0.353													25	44					0	0	0.00395357	0	0
ACOXL	55289	broad.mit.edu	37	2	111551231	111551231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:111551231G>A	uc002tgr.3	+	4	388	c.164G>A	c.(163-165)GGA>GAA	p.G55E	ACOXL_uc010fkc.2_Missense_Mutation_p.G55E|ACOXL_uc010yxk.1_Missense_Mutation_p.G55E	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	55					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						TTCCAGTGCGGAATAATTTAT	0.423													16	82					0	0	0.00121646	0	0
ACOXL	55289	broad.mit.edu	37	2	111666426	111666426	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:111666426G>A	uc002tgr.3	+	11	1073	c.849G>A	c.(847-849)CAG>CAA	p.Q283Q	ACOXL_uc010fkc.2_Silent_p.Q283Q|ACOXL_uc010yxk.1_Silent_p.Q283Q	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	283					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						ACCAAACACAGACCCTGCGGC	0.532													28	35					0	0	0.00283554	0	0
IL1B	3553	broad.mit.edu	37	2	113588049	113588049	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:113588049G>A	uc002tii.1	-	7	786	c.699C>T	c.(697-699)TTC>TTT	p.F233F	IL1B_uc002tih.1_Silent_p.F202F	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	233					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	ACCAGTTGGGGAACTGGGCAG	0.448													25	43					0	0	0.00395357	0	0
CCDC93	54520	broad.mit.edu	37	2	118696639	118696639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:118696639G>A	uc002tlj.2	-	20	1697	c.1571C>T	c.(1570-1572)ACC>ATC	p.T524I	CCDC93_uc010fld.1_Missense_Mutation_p.T524I	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	524										large_intestine(1)|ovary(1)	2						ATCATCCAGGGTATTATATAA	0.358													11	22					0	0	0.00244969	0	0
CCDC93	54520	broad.mit.edu	37	2	118766198	118766198	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:118766198A>G	uc002tlj.2	-	2	205	c.79T>C	c.(79-81)TTG>CTG	p.L27L	CCDC93_uc010fld.1_Silent_p.L27L	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	27										large_intestine(1)|ovary(1)	2						ATTTCAGTCAACTTGACATTT	0.378											OREG0003819	type=REGULATORY REGION|Gene=AK025611|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	41	82					0	0	0.00361006	0	0
MARCO	8685	broad.mit.edu	37	2	119727718	119727718	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:119727718C>T	uc002tln.1	+	3	360	c.228C>T	c.(226-228)GTC>GTT	p.V76V	MARCO_uc010yyf.1_5'UTR	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	76	Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGCTCCGGGTCCTGGAGATGT	0.567													10	32					0	0	0.000978159	0	0
MARCO	8685	broad.mit.edu	37	2	119739064	119739064	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:119739064C>T	uc002tln.1	+	9	978	c.846C>T	c.(844-846)TTC>TTT	p.F282F	MARCO_uc010yyf.1_Silent_p.F204F	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	282	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AAGGTGACTTCGGGAGGCCAG	0.527													6	12					0	0	0.00198382	0	0
MARCO	8685	broad.mit.edu	37	2	119750850	119750850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:119750850G>A	uc002tln.1	+	16	1535	c.1403G>A	c.(1402-1404)GGA>GAA	p.G468E	MARCO_uc010yyf.1_Missense_Mutation_p.G390E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	468	SRCR.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TACTCCAAAGGAAGGGCCCTG	0.547													19	35					0	0	0.00188189	0	0
PCDP1	200373	broad.mit.edu	37	2	120409610	120409610	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:120409610C>T	uc002tmb.2	+	24	2613	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F		NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	793						cilium	calmodulin binding				0	Colorectal(110;0.196)					AAGTGGAATTCCCTATGTTGA	0.373													4	24					0	0	0.000602214	0	0
RALB	5899	broad.mit.edu	37	2	121036296	121036296	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:121036296T>A	uc002tmk.2	+	2	246	c.56T>A	c.(55-57)ATG>AAG	p.M19K	RALB_uc010yys.1_Missense_Mutation_p.M41K|RALB_uc002tml.2_Missense_Mutation_p.M19K|RALB_uc002tmm.2_Intron|RALB_uc010yyt.1_RNA	NM_002881	NP_002872	P11234	RALB_HUMAN	v-ral simian leukemia viral oncogene homolog B	19					apoptosis|cell cycle|cytokinesis|nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of exocyst assembly|regulation of exocyst localization	cytosol|midbody|plasma membrane	GTP binding|GTPase activity|protein binding			lung(3)	3		Prostate(154;0.122)				AAGGTGATCATGGTTGGCAGC	0.567													17	19					0	0	0.00229938	0	0
GLI2	2736	broad.mit.edu	37	2	121712857	121712857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:121712857G>A	uc010flp.2	+	4	524	c.494G>A	c.(493-495)GGC>GAC	p.G165D	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Intron|GLI2_uc010flo.1_Missense_Mutation_p.G40D|GLI2_uc002tmw.1_Missense_Mutation_p.G165D	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	165					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GGACTGTTTGGCCTTCCTGCT	0.637													10	12					0	0	0.000978159	0	0
MYO7B	4648	broad.mit.edu	37	2	128346114	128346114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:128346114G>A	uc002top.2	+	15	1891	c.1838G>A	c.(1837-1839)GGA>GAA	p.G613E		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	613	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GCAAAGGCAGGAAACCATCTC	0.527													14	38					0	0	0.00074312	0	0
WDR33	55339	broad.mit.edu	37	2	128467156	128467156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:128467156C>T	uc002tpg.1	-	20	3656	c.3473G>A	c.(3472-3474)GGA>GAA	p.G1158E		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	1158					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CTTCCTTCCTCCTACACAACA	0.502													11	38					0	0	0.000673444	0	0
WDR33	55339	broad.mit.edu	37	2	128467267	128467267	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:128467267C>A	uc002tpg.1	-	19	3655	c.3472G>T	c.(3472-3474)GGA>TGA	p.G1158*		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	1158					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		ACTCGCTCACCTCGTGGGGTA	0.527													22	63					3.08376e-08	8.62722e-08	0.00332997	1	0
WDR33	55339	broad.mit.edu	37	2	128479482	128479482	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:128479482C>G	uc002tpg.1	-	15	1782	c.1599G>C	c.(1597-1599)GAG>GAC	p.E533D		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	533					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		TTTTTTTCTTCTCTTCCAATT	0.388													19	84					0	0	0.00074312	0	0
RAB6C	84084	broad.mit.edu	37	2	130738117	130738117	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:130738117G>A	uc002tpx.1	+	1	883	c.429G>A	c.(427-429)AGG>AGA	p.R143R	uc002tpw.1_5'Flank	NM_032144	NP_115520	Q9H0N0	RAB6C_HUMAN	RAB6C, member RAS oncogene family	143					protein transport|response to drug|small GTPase mediated signal transduction		GTP binding|GTPase activity			lung(1)	1	Colorectal(110;0.1)					AGGGAGAGAGGAAAGCCAAAG	0.448													26	193					0	0	0.000878237	0	0
FAM123C	205147	broad.mit.edu	37	2	131520273	131520273	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:131520273C>T	uc002trw.2	+	2	818	c.628C>T	c.(628-630)CTG>TTG	p.L210L	FAM123C_uc010fmv.2_Silent_p.L210L|FAM123C_uc010fms.1_Silent_p.L210L|FAM123C_uc010fmt.1_Silent_p.L210L|FAM123C_uc010fmu.1_Silent_p.L210L	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	210										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGGGCCGGGGCTGGACGGCCT	0.701													10	13					0	0	0.000673444	0	0
FAM123C	205147	broad.mit.edu	37	2	131520728	131520728	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:131520728C>T	uc002trw.2	+	2	1273	c.1083C>T	c.(1081-1083)GGC>GGT	p.G361G	FAM123C_uc010fmv.2_Silent_p.G361G|FAM123C_uc010fms.1_Silent_p.G361G|FAM123C_uc010fmt.1_Silent_p.G361G|FAM123C_uc010fmu.1_Silent_p.G361G	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	361										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CTCGCAGCGGCTCCAAAGCCA	0.652													9	13					0	0	0.000673444	0	0
LOC401010	401010	broad.mit.edu	37	2	132200288	132200288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:132200288G>A	uc002tst.2	-	1	2180	c.1714C>T	c.(1714-1716)CCT>TCT	p.P572S		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						AGCTCCCCAGGGGCCAGCCCC	0.527													3	6					0	0	0.00024832	0	0
CCDC74A	90557	broad.mit.edu	37	2	132290261	132290261	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:132290261C>T	uc002tta.2	+	5	835	c.783C>T	c.(781-783)ATC>ATT	p.I261I	CCDC74A_uc002ttb.2_Silent_p.I195I	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	261										skin(1)	1						CCCCAATGATCCTGCCCCTTC	0.617													6	37					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	2	133066873	133066873	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:133066873G>A	uc002ttk.1	+	2		c.72G>A								Homo sapiens cDNA FLJ37280 fis, clone BRAMY2012881.																		TTTCCAAAAGGAAGACGGTAT	0.378													8	117					0	0	0.00136819	0	0
LYPD1	116372	broad.mit.edu	37	2	133403776	133403776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:133403776G>A	uc002ttn.2	-	3	1244	c.268C>T	c.(268-270)CCA>TCA	p.P90S	GPR39_uc002ttl.2_3'UTR|LYPD1_uc002ttm.3_Missense_Mutation_p.P106S|LYPD1_uc002tto.2_Missense_Mutation_p.P38S	NM_144586	NP_653187	Q8N2G4	LYPD1_HUMAN	LY6/PLAUR domain containing 1 isoform a	90	UPAR/Ly6.					anchored to membrane|plasma membrane					0						AGTTTCCCTGGGGAGCAGAAG	0.577													8	21					0	0	0.00307968	0	0
YSK4	80122	broad.mit.edu	37	2	135745582	135745582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:135745582C>T	uc002tue.1	-	7	891	c.860G>A	c.(859-861)AGA>AAA	p.R287K	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.R174K|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.R15K|YSK4_uc002tui.3_Missense_Mutation_p.R304K	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	287							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GCACATGTTTCTTGACCAAAT	0.448													10	71					0	0	0.00136819	0	0
RAB3GAP1	22930	broad.mit.edu	37	2	135888228	135888228	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:135888228C>T	uc002tuj.2	+	13	1198	c.1173C>T	c.(1171-1173)ATC>ATT	p.I391I	RAB3GAP1_uc010fnf.2_Silent_p.I391I|RAB3GAP1_uc010fng.2_Silent_p.I216I|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	391						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		AGAAGAAAATCCGAAAACACA	0.358													35	50					0	0	0.00111076	0	0
THSD7B	80731	broad.mit.edu	37	2	137814319	137814319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:137814319G>A	uc002tva.1	+	2	376	c.376G>A	c.(376-378)GAA>AAA	p.E126K	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.E16K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGTTGCAAATGAAATATGCGA	0.522													14	35					0	0	0.00244969	0	0
LRP1B	53353	broad.mit.edu	37	2	141130628	141130628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:141130628C>T	uc002tvj.1	-	69	11689	c.10717G>A	c.(10717-10719)GAT>AAT	p.D3573N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3573	Extracellular (Potential).|LDL-receptor class A 27.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCATGGCCATCACATTTCCAT	0.363										TSP Lung(27;0.18)			13	43					0	0	0.00185496	0	0
LRP1B	53353	broad.mit.edu	37	2	141130635	141130635	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:141130635C>T	uc002tvj.1	-	69	11682	c.10710G>A	c.(10708-10710)TGG>TGA	p.W3570*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3570	Extracellular (Potential).|LDL-receptor class A 27.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CATCACATTTCCATTTTGCTG	0.358										TSP Lung(27;0.18)			23	31					0	0	0.00332997	0	0
LRP1B	53353	broad.mit.edu	37	2	141242937	141242937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:141242937C>T	uc002tvj.1	-	59	10372	c.9400G>A	c.(9400-9402)GAC>AAC	p.D3134N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3134	Extracellular (Potential).|LDL-receptor class B 29.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAAGACAAGTCTCTGGGAAAC	0.348										TSP Lung(27;0.18)			18	37					0	0	0.00121646	0	0
LRP1B	53353	broad.mit.edu	37	2	141459397	141459397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:141459397G>A	uc002tvj.1	-	40	7292	c.6320C>T	c.(6319-6321)TCT>TTT	p.S2107F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2107	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding	p.S2107F(1)|p.S2107T(1)		lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTTCTGACAGACCCGTTTGC	0.418										TSP Lung(27;0.18)			6	25					0	0	0.00307968	0	0
LRP1B	53353	broad.mit.edu	37	2	141641546	141641546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:141641546G>A	uc002tvj.1	-	25	4981	c.4009C>T	c.(4009-4011)CCA>TCA	p.P1337S	LRP1B_uc010fnl.1_Missense_Mutation_p.P519S	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1337	Extracellular (Potential).|LDL-receptor class B 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding	p.P1337S(1)		lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGGCCTTCTGGAGTAGCCAGG	0.473										TSP Lung(27;0.18)			13	46					0	0	0.00316338	0	0
LRP1B	53353	broad.mit.edu	37	2	141771293	141771293	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:141771293A>G	uc002tvj.1	-	14	3184	c.2212T>C	c.(2212-2214)TTG>CTG	p.L738L	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	738	Extracellular (Potential).|LDL-receptor class B 8.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGGTGGTTCAACTCTCTCCCA	0.338										TSP Lung(27;0.18)			7	30					0	0	0.000274275	0	0
LRP1B	53353	broad.mit.edu	37	2	141986896	141986896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:141986896G>A	uc002tvj.1	-	6	1678	c.706C>T	c.(706-708)CAT>TAT	p.H236Y	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	236	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCCAGAGTATGAATTTCATTT	0.303										TSP Lung(27;0.18)			12	80					0	0	0.00185496	0	0
NEB	4703	broad.mit.edu	37	2	152512872	152512872	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:152512872T>C	uc010fnx.2	-	49	6481	c.6290A>G	c.(6289-6291)CAA>CGA	p.Q2097R		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2097	Nebulin 55.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCGATCAGATTGCATCTTAGC	0.473													13	39					0	0	0.00136819	0	0
NEB	4703	broad.mit.edu	37	2	152548448	152548448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:152548448C>T	uc010fnx.2	-	23	2332	c.2141G>A	c.(2140-2142)GGA>GAA	p.G714E	NEB_uc010fny.1_Missense_Mutation_p.G268E	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	714					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATAGCATTTTCCTTTATCTTC	0.338													10	12					0	0	0.00136819	0	0
KCNJ3	3760	broad.mit.edu	37	2	155566249	155566249	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:155566249C>T	uc002tyv.1	+	2	1032	c.837C>T	c.(835-837)CCC>CCT	p.P279P	KCNJ3_uc010zce.1_Intron	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	279	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	CCAAAAGCCCCTTTTATGACC	0.443													13	35					0	0	0.00185496	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711304	155711304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:155711304C>T	uc002tyv.1	+	3	1180	c.985C>T	c.(985-987)CCT>TCT	p.P329S	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	329	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TCGTTTTTTTCCTGTAATTTC	0.388													14	30					0	0	0.00316338	0	0
ERMN	57471	broad.mit.edu	37	2	158178150	158178150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:158178150C>T	uc002tzh.2	-	3	750	c.488G>A	c.(487-489)CGA>CAA	p.R163Q	ERMN_uc010zcj.1_Missense_Mutation_p.R57Q|ERMN_uc010zck.1_Missense_Mutation_p.R143Q|ERMN_uc002tzi.2_Missense_Mutation_p.R176Q	NM_020711	NP_065762	Q8TAM6	ERMIN_HUMAN	ermin, ERM-like protein isoform b	163						cytoplasm|cytoskeleton				ovary(1)|skin(1)	2						GCTAGGTTTTCGAAATCCCAG	0.378													39	81					0	0	0.00195071	0	0
MARCH7	64844	broad.mit.edu	37	2	160604951	160604951	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:160604951C>A	uc002uax.2	+	5	1272	c.1150C>A	c.(1150-1152)CCA>ACA	p.P384T	MARCH7_uc010foq.2_Missense_Mutation_p.P384T|MARCH7_uc010zcn.1_Missense_Mutation_p.P328T|MARCH7_uc010for.2_Missense_Mutation_p.P346T|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	384	Ser-rich.						ligase activity|zinc ion binding				0						AAATACAGGACCATGGTTATC	0.413													12	94					0.000151284	0.000421779	0.00185496	1	0
LY75	4065	broad.mit.edu	37	2	160673493	160673493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:160673493C>T	uc002ubc.3	-	30	4273	c.4204G>A	c.(4204-4206)GAA>AAA	p.E1402K	LY75_uc002ubb.3_Missense_Mutation_p.E1402K|LY75_uc010fos.2_Missense_Mutation_p.E1402K	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1402	Extracellular (Potential).|C-type lectin 9.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		ATACCATCTTCATATGGCATA	0.313													31	53					0	0	0.00375469	0	0
ITGB6	3694	broad.mit.edu	37	2	160982960	160982960	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:160982960T>G	uc002ubh.2	-	11	1829	c.1813A>C	c.(1813-1815)ACA>CCA	p.T605P	ITGB6_uc010fou.2_Missense_Mutation_p.T605P|ITGB6_uc010zcq.1_Missense_Mutation_p.T563P|ITGB6_uc010fov.1_Missense_Mutation_p.T605P	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	605	Extracellular (Potential).|IV.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						CCAGGGTTTGTGCAAACACAC	0.542													9	24					0	0	0.000978159	0	0
SLC4A10	57282	broad.mit.edu	37	2	162820767	162820767	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:162820767C>T	uc002ubx.3	+	22	3169	c.2985C>T	c.(2983-2985)GGC>GGT	p.G995G	SLC4A10_uc002uby.3_Silent_p.G965G|SLC4A10_uc010zcs.1_Silent_p.G976G	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	995	Extracellular (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						GTTGCCTTGGCCTTTTGTGGA	0.393													9	37					0	0	0.000673444	0	0
FAP	2191	broad.mit.edu	37	2	163044724	163044724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:163044724C>T	uc002ucd.2	-	20	1977	c.1769G>A	c.(1768-1770)CGA>CAA	p.R590Q	FAP_uc010fpc.2_Missense_Mutation_p.R139Q|FAP_uc010zct.1_Missense_Mutation_p.R565Q|FAP_uc010fpd.2_Missense_Mutation_p.R69Q	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	590	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						ACCCAGCTTTCGATACACTGC	0.443													8	41					0	0	0.000442599	0	0
FIGN	55137	broad.mit.edu	37	2	164466983	164466983	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:164466983G>A	uc002uck.1	-	3	1670	c.1359C>T	c.(1357-1359)TCC>TCT	p.S453S		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	453						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						CAGAGTGGTTGGATGAGGTAG	0.542													18	21					0	0	0.000566183	0	0
GRB14	2888	broad.mit.edu	37	2	165365284	165365284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:165365284C>T	uc002ucl.2	-	7	1436	c.895G>A	c.(895-897)GGA>AGA	p.G299R	GRB14_uc010zcv.1_Missense_Mutation_p.G212R|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	299	PH.			G->N: No effect on PI(3,4,5)P3-binding.	blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						GTCGGTGCTCCATGTTTTTTT	0.373													22	49					0	0	0.00395357	0	0
GRB14	2888	broad.mit.edu	37	2	165381533	165381533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:165381533G>A	uc002ucl.2	-	5	1200	c.659C>T	c.(658-660)TCC>TTC	p.S220F	GRB14_uc010zcv.1_Missense_Mutation_p.S133F|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	220					blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						CTGTGTGGGGGATATTTCACC	0.284													11	60					0	0	0.000978159	0	0
COBLL1	22837	broad.mit.edu	37	2	165551016	165551016	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:165551016C>T	uc010zcw.1	-	15	3325	c.3201G>A	c.(3199-3201)CAG>CAA	p.Q1067Q	COBLL1_uc002ucp.2_Silent_p.Q1000Q|COBLL1_uc002ucq.2_Silent_p.Q962Q|COBLL1_uc010zcx.1_Silent_p.Q1008Q|COBLL1_uc002ucn.2_Silent_p.Q428Q|COBLL1_uc002uco.2_Silent_p.Q731Q	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	1038										ovary(2)|pancreas(1)	3						GTGTGGATACCTGACTAGCAG	0.473													11	40					0	0	0.000422831	0	0
SCN3A	6328	broad.mit.edu	37	2	166011076	166011076	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:166011076C>T	uc002ucx.2	-	11	1758	c.1266G>A	c.(1264-1266)GTG>GTA	p.V422V	SCN3A_uc002ucy.2_Silent_p.V422V|SCN3A_uc002ucz.2_Silent_p.V422V|SCN3A_uc002uda.1_Silent_p.V291V|SCN3A_uc002udb.1_Silent_p.V291V	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	422	Helical; Name=S6 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CCATGGCCACCACAGCCAGGA	0.448													14	48					0	0	0.00185496	0	0
SCN3A	6328	broad.mit.edu	37	2	166012313	166012313	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:166012313G>A	uc002ucx.2	-	10	1624	c.1132C>T	c.(1132-1134)CGA>TGA	p.R378*	SCN3A_uc002ucy.2_Nonsense_Mutation_p.R378*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.R378*|SCN3A_uc002uda.1_Nonsense_Mutation_p.R247*|SCN3A_uc002udb.1_Nonsense_Mutation_p.R247*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	378						voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.R378*(1)		ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GTCATGAGTCGAAATAGAGAC	0.413													15	72					0	0	0.000422831	0	0
SCN3A	6328	broad.mit.edu	37	2	166020975	166020975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:166020975C>T	uc002ucx.2	-	6	1021	c.529G>A	c.(529-531)GGG>AGG	p.G177R	SCN3A_uc002ucy.2_Missense_Mutation_p.G177R|SCN3A_uc002ucz.2_Missense_Mutation_p.G177R|SCN3A_uc002uda.1_Missense_Mutation_p.G46R|SCN3A_uc002udb.1_Missense_Mutation_p.G46R	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	177						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AAGCAAAACCCTCTTGCCAAG	0.368													20	30					0	0	0.00188189	0	0
GALNT3	2591	broad.mit.edu	37	2	166615345	166615345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:166615345G>A	uc010fph.1	-	6	1490	c.1103C>T	c.(1102-1104)TCC>TTC	p.S368F	GALNT3_uc010fpi.1_Missense_Mutation_p.S368F	NM_004482	NP_004473	Q14435	GALT3_HUMAN	polypeptide N-acetylgalactosaminyltransferase 3	368	Catalytic subdomain B.|Lumenal (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	Golgi cisterna membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	calcium ion binding|manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(2)|ovary(1)	3						TTTTGATATGGAAAAAAGTCC	0.299													22	119					0	0	0.00332997	0	0
SCN9A	6335	broad.mit.edu	37	2	167055571	167055571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:167055571G>A	uc010fpl.2	-	27	5886	c.5545C>T	c.(5545-5547)CGT>TGT	p.R1849C	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1860						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ATCTGTGAACGAAGAGAATCC	0.453													39	87					0	0	0.00195071	0	0
SCN9A	6335	broad.mit.edu	37	2	167143021	167143021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:167143021C>T	uc010fpl.2	-	11	1768	c.1427G>A	c.(1426-1428)AGA>AAA	p.R476K	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.R347K|SCN9A_uc002uds.1_Missense_Mutation_p.R347K|SCN9A_uc002udt.1_Missense_Mutation_p.R347K	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	476						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCTGTTTCTTCTTTCTTTAGC	0.408													12	19					0	0	0.000978159	0	0
SCN7A	6332	broad.mit.edu	37	2	167284355	167284355	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:167284355C>T	uc002udu.1	-	17	2923	c.2796G>A	c.(2794-2796)GAG>GAA	p.E932E	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	932	Helical; Name=S1 of repeat III; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACCAATTGTTCTCTACAATCT	0.463													4	11					0	0	0.00024832	0	0
SCN7A	6332	broad.mit.edu	37	2	167284437	167284437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:167284437G>A	uc002udu.1	-	17	2841	c.2714C>T	c.(2713-2715)TCT>TTT	p.S905F	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	905					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACCAAGTGAAGATCCGCGTCT	0.393													6	21					0	0	0.00307968	0	0
XIRP2	129446	broad.mit.edu	37	2	168099166	168099166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:168099166G>A	uc002udx.2	+	8	1282	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E247K|XIRP2_uc010fpq.2_Missense_Mutation_p.E200K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	247					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCAGAGGAAGGAAACATCAAC	0.423													18	31					0	0	0.000566183	0	0
XIRP2	129446	broad.mit.edu	37	2	168105040	168105040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:168105040C>T	uc002udx.2	+	8	7156	c.7138C>T	c.(7138-7140)CTT>TTT	p.L2380F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.L2205F|XIRP2_uc010fpq.2_Missense_Mutation_p.L2158F|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2205					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGCACATCTCCTTTCCTCCTC	0.463													7	34					0	0	0.00198382	0	0
XIRP2	129446	broad.mit.edu	37	2	168105475	168105475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:168105475C>T	uc002udx.2	+	8	7591	c.7573C>T	c.(7573-7575)CCA>TCA	p.P2525S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P2350S|XIRP2_uc010fpq.2_Missense_Mutation_p.P2303S|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2350					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCATTCATTTCCAGAGAGTTC	0.343													13	74					0	0	0.00185496	0	0
XIRP2	129446	broad.mit.edu	37	2	168107021	168107021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:168107021G>A	uc002udx.2	+	8	9137	c.9119G>A	c.(9118-9120)GGA>GAA	p.G3040E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.G2865E|XIRP2_uc010fpq.2_Missense_Mutation_p.G2818E|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2865					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCCAAAACAGGAAAACCGGGA	0.318													9	67					0	0	0.000442599	0	0
ABCB11	8647	broad.mit.edu	37	2	169792783	169792783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:169792783C>T	uc002ueo.1	-	22	2897	c.2771G>A	c.(2770-2772)GGA>GAA	p.G924E	ABCB11_uc010zda.1_Missense_Mutation_p.G366E|ABCB11_uc010zdb.1_Missense_Mutation_p.G400E	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	924	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	AGAGGCAAATCCTGTCAACAT	0.493													11	19					0	0	0.00136819	0	0
ABCB11	8647	broad.mit.edu	37	2	169874614	169874614	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:169874614G>A	uc002ueo.1	-	2	148	c.22C>T	c.(22-24)CGA>TGA	p.R8*		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	8	Cytoplasmic (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	TTTATACTTCGAAGAATTACT	0.358													25	44					0	0	0.000720815	0	0
LRP2	4036	broad.mit.edu	37	2	170009333	170009333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:170009333C>T	uc002ues.2	-	67	12650	c.12437G>A	c.(12436-12438)GGA>GAA	p.G4146E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4146	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CACTGCTATTCCATCTGGCTG	0.473													20	74					0	0	0.00188189	0	0
LRP2	4036	broad.mit.edu	37	2	170058349	170058349	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:170058349G>A	uc002ues.2	-	44	8454	c.8241C>T	c.(8239-8241)ACC>ACT	p.T2747T		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2747	Extracellular (Potential).|LDL-receptor class A 17.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CATTGGCACAGGTGAAGGCTG	0.448													13	26					0	0	0.00316338	0	0
LRP2	4036	broad.mit.edu	37	2	170093615	170093615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:170093615C>T	uc002ues.2	-	28	4902	c.4689G>A	c.(4687-4689)ATG>ATA	p.M1563I		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1563	LDL-receptor class B 11.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGTCTTACTTCATTCTGGGAT	0.368													24	75					0	0	0.00395357	0	0
C2orf77	129881	broad.mit.edu	37	2	170506900	170506900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:170506900C>T	uc002ufe.2	-	7	1185	c.1091G>A	c.(1090-1092)AGA>AAA	p.R364K		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	364	Potential.										0						ATCTTTTTCTCTTTCTCTTTT	0.313													12	53					0	0	0.000978159	0	0
MYO3B	140469	broad.mit.edu	37	2	171264304	171264304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:171264304C>T	uc002ufy.2	+	22	2743	c.2600C>T	c.(2599-2601)TCA>TTA	p.S867L	MYO3B_uc002ufv.2_Missense_Mutation_p.S854L|MYO3B_uc010fqb.1_Missense_Mutation_p.S854L|MYO3B_uc002ufz.2_Missense_Mutation_p.S867L|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	867	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity	p.S867*(1)		lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CTGAGAACGTCAGAAAACAAG	0.453													9	80					0	0	0.000673444	0	0
ZAK	51776	broad.mit.edu	37	2	174094427	174094427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:174094427C>T	uc002uhz.2	+	12	1198	c.998C>T	c.(997-999)TCC>TTC	p.S333F	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	333					activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			CTGCTGCCTTCCTTTGAGATT	0.373													21	92					0	0	0.000878237	0	0
CHN1	1123	broad.mit.edu	37	2	175665002	175665002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:175665002C>T	uc002uji.2	-	13	1752	c.1222G>A	c.(1222-1224)GAA>AAA	p.E408K	CHN1_uc010zeq.1_Missense_Mutation_p.E382K|CHN1_uc002ujj.2_Missense_Mutation_p.E183K|CHN1_uc002ujg.2_Missense_Mutation_p.E283K	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	408	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			TTCTCCTTTTCGTGGAGGGTC	0.403			T	TAF15	extraskeletal myxoid chondrosarcoma								25	71					0	0	0.000878237	0	0
OSBPL6	114880	broad.mit.edu	37	2	179214032	179214032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179214032C>T	uc002ulx.2	+	12	1447	c.1069C>T	c.(1069-1071)CCC>TCC	p.P357S	OSBPL6_uc002ulw.2_Missense_Mutation_p.P326S|OSBPL6_uc002uly.2_Missense_Mutation_p.P382S|OSBPL6_uc010zfe.1_Missense_Mutation_p.P326S|OSBPL6_uc002ulz.2_Missense_Mutation_p.P357S|OSBPL6_uc002uma.2_Missense_Mutation_p.P361S	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	357					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			ATTTCAGACTCCCCCTAGCCA	0.428													47	66					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179407867	179407867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179407867C>T	uc010zfg.1	-	296	89353	c.89129G>A	c.(89128-89130)AGG>AAG	p.R29710K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R23405K|TTN_uc010zfi.1_Missense_Mutation_p.R23338K|TTN_uc010zfj.1_Missense_Mutation_p.R23213K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30637							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTTGTGCCCTTATTCTAAA	0.408													48	74					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179411776	179411777	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179411776_179411777GC>TT	uc010zfg.1	-	289	86995_86996	c.86771_86772GC>AA	c.(86770-86772)AGC>AAA	p.S28924K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S22619K|TTN_uc010zfi.1_Missense_Mutation_p.S22552K|TTN_uc010zfj.1_Missense_Mutation_p.S22427K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29851							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGCTGGCCTTGCTAACACCTGC	0.381													45	94					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179419750	179419750	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179419750T>A	uc010zfg.1	-	280	80956	c.80732A>T	c.(80731-80733)AAA>ATA	p.K26911I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K20606I|TTN_uc010zfi.1_Missense_Mutation_p.K20539I|TTN_uc010zfj.1_Missense_Mutation_p.K20414I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27838							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTAATTCTTTATCATCTTT	0.418													8	15					0	0	0.00307968	0	0
TTN	7273	broad.mit.edu	37	2	179430436	179430436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179430436C>T	uc010zfg.1	-	275	72943	c.72719G>A	c.(72718-72720)GGC>GAC	p.G24240D	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G17935D|TTN_uc010zfi.1_Missense_Mutation_p.G17868D|TTN_uc010zfj.1_Missense_Mutation_p.G17743D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25167							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGCTACCGCCATCATGTTC	0.483													23	38					0	0	0.00229938	0	0
TTN	7273	broad.mit.edu	37	2	179433209	179433209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179433209C>T	uc010zfg.1	-	275	70170	c.69946G>A	c.(69946-69948)GAA>AAA	p.E23316K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E17011K|TTN_uc010zfi.1_Missense_Mutation_p.E16944K|TTN_uc010zfj.1_Missense_Mutation_p.E16819K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24243							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTACAATTTCGATGGATGCT	0.388													12	21					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179438574	179438574	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179438574C>T	uc010zfg.1	-	275	64805	c.64581G>A	c.(64579-64581)AGG>AGA	p.R21527R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R15222R|TTN_uc010zfi.1_Silent_p.R15155R|TTN_uc010zfj.1_Silent_p.R15030R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22454							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACCACTATCCCTTCTTGTTG	0.413													14	33					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179443704	179443704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179443704C>T	uc010zfg.1	-	269	60573	c.60349G>A	c.(60349-60351)GAT>AAT	p.D20117N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D13812N|TTN_uc010zfi.1_Missense_Mutation_p.D13745N|TTN_uc010zfj.1_Missense_Mutation_p.D13620N|uc002umv.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21044							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCACAGAATCCCTCTTCTCT	0.463													7	15					0	0	0.000274275	0	0
TTN	7273	broad.mit.edu	37	2	179462773	179462773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179462773C>T	uc010zfg.1	-	242	49644	c.49420G>A	c.(49420-49422)GAA>AAA	p.E16474K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E10169K|TTN_uc010zfi.1_Missense_Mutation_p.E10102K|TTN_uc010zfj.1_Missense_Mutation_p.E9977K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17401							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCTCACTTCTTTATCTTTA	0.393													16	108					0	0	0.00188189	0	0
TTN	7273	broad.mit.edu	37	2	179542556	179542556	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179542556C>T	uc010zfg.1	-	143	30575	c.30351G>A	c.(30349-30351)GAG>GAA	p.E10117E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.E6778E|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11044							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGAACTTCCTCTTCAGGAA	0.428													9	51					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179552865	179552865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179552865C>T	uc010zfg.1	-	124	28776	c.28552G>A	c.(28552-28554)GAA>AAA	p.E9518K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6179K|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10445							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGCTTCTTCCTCCTCCTCT	0.388													39	81					0	0	0.00195071	0	0
TTN	7273	broad.mit.edu	37	2	179569925	179569925	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179569925G>C	uc010zfg.1	-	100	26072	c.25848C>G	c.(25846-25848)AGC>AGG	p.S8616R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S5277R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9543							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCTTCTTGGCTTTGCTTGA	0.363													39	81					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179569999	179569999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179569999C>T	uc010zfg.1	-	100	25998	c.25774G>A	c.(25774-25776)GAA>AAA	p.E8592K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5253K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9519							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCATATTTTTCATATTCTTTA	0.368													9	42					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179575397	179575397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179575397C>T	uc010zfg.1	-	95	24919	c.24695G>A	c.(24694-24696)GGA>GAA	p.G8232E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4893E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9159							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGAGTCTTTTCCCACTTCATT	0.403													13	86					0	0	0.00244969	0	0
TTN	7273	broad.mit.edu	37	2	179576002	179576002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179576002C>T	uc010zfg.1	-	94	24453	c.24229G>A	c.(24229-24231)GAT>AAT	p.D8077N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D4738N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9004							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGGCACAATCAAAAACAACT	0.383													16	75					0	0	0.00316338	0	0
TTN	7273	broad.mit.edu	37	2	179585326	179585326	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179585326G>A	uc010zfg.1	-	77	19655	c.19431C>T	c.(19429-19431)CTC>CTT	p.L6477L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L3138L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7404							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCACATTGGAGAATCACAT	0.388													6	12					0	0	0.00307968	0	0
TTN	7273	broad.mit.edu	37	2	179588245	179588245	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179588245C>T	uc010zfg.1	-	71	18074	c.17850G>A	c.(17848-17850)CTG>CTA	p.L5950L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L2611L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6877							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAATAATTCCAGTTCTGCCA	0.453													9	12					0	0	0.000274275	0	0
TTN	7273	broad.mit.edu	37	2	179597628	179597628	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179597628C>T	uc010zfg.1	-	52	12767	c.12543G>A	c.(12541-12543)GGG>GGA	p.G4181G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G842G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5108							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGTGAAATTCCCTGCATCAT	0.453													4	6					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179598013	179598013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179598013G>A	uc010zfg.1	-	51	12499	c.12275C>T	c.(12274-12276)TCC>TTC	p.S4092F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S753F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5019							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTTCATTGGAAATCTCAAA	0.378													25	39					0	0	0.00283554	0	0
TTN	7273	broad.mit.edu	37	2	179599168	179599168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179599168G>A	uc010zfg.1	-	49	11875	c.11651C>T	c.(11650-11652)TCT>TTT	p.S3884F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S545F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4811							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACACACAAGAGACTTCTGAGA	0.398													11	68					0	0	0.00136819	0	0
TTN	7273	broad.mit.edu	37	2	179604168	179604168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179604168C>T	uc010zfh.1	-	46	13503	c.13279G>A	c.(13279-13281)GGT>AGT	p.G4427S	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.G4360S|TTN_uc010zfj.1_Missense_Mutation_p.G4235S|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTAAGCCACCCTCAGCTTCC	0.428													8	20					0	0	0.00307968	0	0
TTN	7273	broad.mit.edu	37	2	179604834	179604834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179604834C>T	uc010zfh.1	-	46	12837	c.12613G>A	c.(12613-12615)GAC>AAC	p.D4205N	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.D4138N|TTN_uc010zfj.1_Missense_Mutation_p.D4013N|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAAGAAGGTCCCTTCCCTGT	0.478													7	16					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179610788	179610788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179610788C>T	uc002unb.2	-	46	16563	c.16339G>A	c.(16339-16341)GAT>AAT	p.D5447N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	8954							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTGCACTATCAGAAAGACAG	0.398													12	29					0	0	0.00185496	0	0
TTN	7273	broad.mit.edu	37	2	179614661	179614661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179614661C>T	uc002unb.2	-	46	12690	c.12466G>A	c.(12466-12468)GAA>AAA	p.E4156K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGGTGGTTCATTAGTAATA	0.393													8	22					0	0	0.000274275	0	0
TTN	7273	broad.mit.edu	37	2	179616237	179616237	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179616237C>T	uc002unb.2	-	46	11114	c.10890G>A	c.(10888-10890)AGG>AGA	p.R3630R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAACCTTTATCCTATCTTCTC	0.363													21	45					0	0	0.00332997	0	0
TTN	7273	broad.mit.edu	37	2	179642503	179642503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179642503C>T	uc010zfg.1	-	25	4632	c.4408G>A	c.(4408-4410)GAA>AAA	p.E1470K	TTN_uc010zfh.1_Missense_Mutation_p.E1424K|TTN_uc010zfi.1_Missense_Mutation_p.E1424K|TTN_uc010zfj.1_Missense_Mutation_p.E1424K|TTN_uc002unb.2_Missense_Mutation_p.E1470K|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1470							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTGCCCTTCTAAACATTTG	0.413													18	32					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179647698	179647698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179647698C>T	uc010zfg.1	-	18	3159	c.2935G>A	c.(2935-2937)GAA>AAA	p.E979K	TTN_uc010zfh.1_Missense_Mutation_p.E933K|TTN_uc010zfi.1_Missense_Mutation_p.E933K|TTN_uc010zfj.1_Missense_Mutation_p.E933K|TTN_uc002unb.2_Missense_Mutation_p.E979K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	979							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTAGTCTTCCCTGTACCAT	0.478													13	33					0	0	0.00316338	0	0
CCDC141	285025	broad.mit.edu	37	2	179702159	179702159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:179702159C>T	uc002unf.1	-	13	2119	c.2062G>A	c.(2062-2064)GAA>AAA	p.E688K	CCDC141_uc002une.1_Missense_Mutation_p.E138K	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	688							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			AGAACAGATTCCTGGGCATCC	0.522													10	22					0	0	0.000673444	0	0
PDE1A	5136	broad.mit.edu	37	2	183011871	183011871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:183011871C>T	uc002uoq.1	-	14	1723	c.1573G>A	c.(1573-1575)GAT>AAT	p.D525N	PDE1A_uc010zfp.1_Missense_Mutation_p.D421N|PDE1A_uc010zfq.1_Missense_Mutation_p.D525N	NM_005019	NP_005010	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 1	Error:Variant_position_missing_in_P54750_after_alignment					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TTATGAAGATCAGATTCACCT	0.274													9	59					0	0	0.000274275	0	0
DNAJC10	54431	broad.mit.edu	37	2	183624032	183624032	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:183624032A>T	uc002uow.1	+	21	2558	c.2143A>T	c.(2143-2145)AGG>TGG	p.R715W	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.R669W|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	715	Thioredoxin 4.				apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			GCTCTTGGCTAGGGTAAGTCA	0.333													10	59					0	0	0.00244969	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800767	185800767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:185800767C>T	uc002uph.2	+	4	1238	c.644C>T	c.(643-645)TCT>TTT	p.S215F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	215						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ATCGGCTTTTCTTTTGCATTT	0.433													10	55					0	0	0.000673444	0	0
FAM171B	165215	broad.mit.edu	37	2	187626805	187626805	+	Missense_Mutation	SNP	G	A	A	rs145287585		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:187626805G>A	uc002ups.2	+	8	1848	c.1736G>A	c.(1735-1737)CGA>CAA	p.R579Q	FAM171B_uc002upr.1_Missense_Mutation_p.R546Q|FAM171B_uc002upt.2_Missense_Mutation_p.R48Q	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	579	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						CCAGTAAATCGAGAGAACTTT	0.458													7	11					0	0	0.000274275	0	0
COL3A1	1281	broad.mit.edu	37	2	189868843	189868843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:189868843G>A	uc002uqj.1	+	39	2914	c.2797G>A	c.(2797-2799)GGA>AGA	p.G933R		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	933	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	AGGAGAGAAGGGATCGCCTGG	0.493													5	33					0	0	0.00198382	0	0
COL5A2	1290	broad.mit.edu	37	2	189901342	189901342	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:189901342C>T	uc002uqk.2	-	52	4388	c.4113G>A	c.(4111-4113)CAG>CAA	p.Q1371Q	COL5A2_uc010frx.2_Silent_p.Q947Q	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1371	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			ATTAAATTACCTGAGACCCTC	0.333													9	38					0	0	0.000442599	0	0
HIBCH	26275	broad.mit.edu	37	2	191069876	191069876	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:191069876A>C	uc002uru.2	-	14	1211	c.1128T>G	c.(1126-1128)TTT>TTG	p.F376L	HIBCH_uc002urv.2_3'UTR	NM_014362	NP_055177	Q6NVY1	HIBCH_HUMAN	3-hydroxyisobutyryl-Coenzyme A hydrolase isoform	376					branched chain family amino acid catabolic process	mitochondrial matrix	3-hydroxyisobutyryl-CoA hydrolase activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000586)|Epithelial(96;0.0286)|all cancers(119;0.0814)			CCAAAGACTTAAAGTGATTAT	0.274													17	26					0	0	0.00074312	0	0
NAB1	4664	broad.mit.edu	37	2	191524650	191524650	+	Missense_Mutation	SNP	C	T	T	rs1053176		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:191524650C>T	uc002usb.2	+	4	1320	c.748C>T	c.(748-750)CGG>TGG	p.R250W	NAB1_uc010fsc.2_Missense_Mutation_p.R250W|NAB1_uc010fsd.2_Missense_Mutation_p.R250W|NAB1_uc002usc.2_Missense_Mutation_p.R250W|NAB1_uc010zgh.1_Missense_Mutation_p.R250W	NM_005966	NP_005957	Q13506	NAB1_HUMAN	NGFI-A binding protein 1	250	NCD2.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0405)|all cancers(119;0.109)			GGAGGAAATTCGGAAATACAG	0.418													13	47					0	0	0.00316338	0	0
STAT4	6775	broad.mit.edu	37	2	191919251	191919251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:191919251C>T	uc002usm.1	-	14	1470	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K	STAT4_uc002usn.1_Missense_Mutation_p.E406K|STAT4_uc010zgk.1_Missense_Mutation_p.E251K|STAT4_uc002uso.2_Missense_Mutation_p.E406K	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	406					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			GACTTCATTTCCTTTGGTTGC	0.338													47	181					0	0	0.00361006	0	0
SLC39A10	57181	broad.mit.edu	37	2	196545140	196545140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:196545140C>T	uc002utg.3	+	2	588	c.374C>T	c.(373-375)TCA>TTA	p.S125L	SLC39A10_uc002uth.3_Missense_Mutation_p.S125L|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	125	His-rich.				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			CATTTTCACTCACATAACCAC	0.368													33	62					0	0	0.00283554	0	0
DNAH7	56171	broad.mit.edu	37	2	196642534	196642534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:196642534G>A	uc002utj.3	-	59	11155	c.11054C>T	c.(11053-11055)CCT>CTT	p.P3685L	DNAH7_uc002uti.3_Missense_Mutation_p.P168L	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3685					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATCACCAGAAGGAGGAACAAA	0.368													5	54					0	0	0.00116845	0	0
DNAH7	56171	broad.mit.edu	37	2	196720612	196720612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:196720612C>T	uc002utj.3	-	45	8619	c.8518G>A	c.(8518-8520)GAA>AAA	p.E2840K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2840	Stalk (By similarity).|Potential.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCTGAACTTCCTTAAGGGCT	0.433													26	177					0	0	0.001512	0	0
DNAH7	56171	broad.mit.edu	37	2	196746620	196746620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:196746620C>T	uc002utj.3	-	36	5961	c.5860G>A	c.(5860-5862)GAC>AAC	p.D1954N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1954	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CGAATTGTGTCCAGAGTTGGC	0.378													40	65					0	0	0.00170553	0	0
DNAH7	56171	broad.mit.edu	37	2	196759856	196759856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:196759856C>T	uc002utj.3	-	30	4841	c.4740G>A	c.(4738-4740)ATG>ATA	p.M1580I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1580	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTGCAAATTCATGGAGGCAC	0.373													9	67					0	0	0.000673444	0	0
DNAH7	56171	broad.mit.edu	37	2	196825552	196825552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:196825552C>T	uc002utj.3	-	18	2424	c.2323G>A	c.(2323-2325)GAA>AAA	p.E775K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	775	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTGCTAAATTCGACAGCAGTT	0.393													40	87					0	0	0.00170553	0	0
DNAH7	56171	broad.mit.edu	37	2	196883959	196883959	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:196883959C>T	uc002utj.3	-	9	905	c.804G>A	c.(802-804)AGG>AGA	p.R268R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	268	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCAAGTGATCCCTAATATAAC	0.338													15	86					0	0	0.000422831	0	0
DNAH7	56171	broad.mit.edu	37	2	196922841	196922841	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:196922841C>T	uc002utj.3	-	2	117	c.16_splice	c.e2-1	p.D6_splice		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCGATTTATCCTGTATGAAAA	0.318													20	89					0	0	0.00229938	0	0
HECW2	57520	broad.mit.edu	37	2	197081767	197081767	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:197081767T>A	uc002utm.1	-	27	4642	c.4459A>T	c.(4459-4461)AGA>TGA	p.R1487*	HECW2_uc002utl.1_Nonsense_Mutation_p.R1131*	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1487	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TTGTTGAATCTTTCCACTGCA	0.328													20	79					0	0	0.00395357	0	0
HECW2	57520	broad.mit.edu	37	2	197208412	197208412	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:197208412C>T	uc002utm.1	-	3	552	c.369G>A	c.(367-369)TGG>TGA	p.W123*	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	123					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GCTCAATTCTCCATACAATTT	0.373													62	137					0	0	0.00361006	0	0
SF3B1	23451	broad.mit.edu	37	2	198266186	198266186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:198266186G>A	uc002uue.2	-	17	2482	c.2434C>T	c.(2434-2436)CCT>TCT	p.P812S		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	812					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			AAAAAGGGAGGAAGAATCTCT	0.348													23	55					0	0	0.00278032	0	0
COQ10B	80219	broad.mit.edu	37	2	198327324	198327324	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:198327324C>A	uc002uuh.1	+	3	370	c.316C>A	c.(316-318)CCT>ACT	p.P106T	COQ10B_uc010fsl.1_Missense_Mutation_p.P78T	NM_025147	NP_079423	Q9H8M1	CQ10B_HUMAN	coenzyme Q10 homolog B precursor	106						mitochondrial inner membrane					0			Epithelial(96;0.231)|OV - Ovarian serous cystadenocarcinoma(117;0.246)			GCATTTTGTTCCTTGGTGCAA	0.323													27	100					1.39806e-14	3.92969e-14	0.001512	1	0
SATB2	23314	broad.mit.edu	37	2	200137150	200137150	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:200137150G>A	uc002uuy.1	-	11	2803	c.1986C>T	c.(1984-1986)TTC>TTT	p.F662F	SATB2_uc010fsq.1_Silent_p.F544F|SATB2_uc002uuz.1_Silent_p.F662F|SATB2_uc002uva.1_Silent_p.F662F	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	662	Homeobox.					cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTTCTGGAAGAACTTGATGA	0.542													25	43					0	0	0.000720815	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202483828	202483828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:202483828C>T	uc002uye.2	-	1	74	c.26G>A	c.(25-27)AGG>AAG	p.R9K	ALS2CR11_uc002uyf.2_Missense_Mutation_p.R9K|ALS2CR11_uc010fti.2_Missense_Mutation_p.R9K	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	9										large_intestine(1)|ovary(1)|skin(1)	3						GCTGAAAGGCCTATTTGTCTC	0.627													9	45					0	0	0.000442599	0	0
ALS2	57679	broad.mit.edu	37	2	202570176	202570176	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:202570176C>T	uc002uyo.2	-	30	4945	c.4589G>A	c.(4588-4590)TGG>TAG	p.W1530*	ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	1530	VPS9.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						GGTTGCTGGCCAAAATTTCCT	0.323													7	66					0	0	0.000274275	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203836423	203836424	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:203836423_203836424GG>TT	uc002uzo.2	+	11	1573_1574	c.1293_1294GG>TT	c.(1291-1296)CAGGGA>CATTGA	p.431_432QG>H*	ALS2CR8_uc010zhz.1_RNA|ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Nonsense_Mutation_p.355_356QG>H*|ALS2CR8_uc010zib.1_Nonsense_Mutation_p.355_356QG>H*|ALS2CR8_uc010zic.1_Nonsense_Mutation_p.343_344QG>H*|ALS2CR8_uc002uzp.2_Nonsense_Mutation_p.431_432QG>H*	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	431_432										large_intestine(1)|ovary(1)	2						TAGTATCACAGGGAATAGAACA	0.347													15	360					0	0	6.4e-05	0	0
INO80D	54891	broad.mit.edu	37	2	206921529	206921529	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:206921529G>A	uc002vaz.3	-	4	762	c.357C>T	c.(355-357)GCC>GCT	p.A119A		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	119					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						GCATCTTCAAGGCCAACGTGG	0.512													5	18					0	0	0.000602214	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171302	207171302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:207171302G>A	uc002vbp.2	+	5	2300	c.2050G>A	c.(2050-2052)GAA>AAA	p.E684K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	684							nucleic acid binding|zinc ion binding			ovary(3)	3						TCAAGTAGCCGAAATAGAGCG	0.443													5	22					0	0	0.000602214	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174246	207174246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:207174246G>A	uc002vbp.2	+	5	5244	c.4994G>A	c.(4993-4995)GGA>GAA	p.G1665E		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1665							nucleic acid binding|zinc ion binding			ovary(3)	3						GGTTCTAAAGGAAAATTTAAT	0.408													26	56					0	0	0.000878237	0	0
FASTKD2	22868	broad.mit.edu	37	2	207636625	207636626	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:207636625_207636626CC>TT	uc002vbu.2	+	5	1408_1409	c.998_999CC>TT	c.(997-999)GCC>GTT	p.A333V	FASTKD2_uc002vbv.2_Missense_Mutation_p.A333V|FASTKD2_uc002vbx.2_Missense_Mutation_p.A333V|FASTKD2_uc002vbw.1_Missense_Mutation_p.A333V	NM_001136193	NP_001129665	Q9NYY8	FAKD2_HUMAN	FAST kinase domains 2	333					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(2)|skin(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0718)|Epithelial(149;0.119)|Lung(261;0.138)		TAGATGAAAGCCTTGAGGGAAT	0.257													15	67					0	0	6.4e-05	0	0
CRYGC	1420	broad.mit.edu	37	2	208993094	208993094	+	Missense_Mutation	SNP	C	T	T	rs149355001		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:208993094C>T	uc002vco.3	-	3	396	c.358G>A	c.(358-360)GAG>AAG	p.E120K		NM_020989	NP_066269	P07315	CRGC_HUMAN	crystallin, gamma C	120	Beta/gamma crystallin 'Greek key' 3.				visual perception	cytoplasm|nucleus	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		GAACGGATCTCGCTGAGGTGG	0.632													10	11					0	0	0.000442599	0	0
LANCL1	10314	broad.mit.edu	37	2	211302518	211302518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:211302518G>A	uc010zjh.1	-	7	844	c.769C>T	c.(769-771)CCT>TCT	p.P257S	LANCL1_uc002ved.2_Missense_Mutation_p.P257S|LANCL1_uc010fuq.2_Missense_Mutation_p.P257S	NM_001136574	NP_001130046	O43813	LANC1_HUMAN	lanthionine synthetase C-like protein 1	257						cytoplasm|integral to plasma membrane|microtubule cytoskeleton|nucleus	catalytic activity|G-protein coupled receptor activity|glutathione binding|low-density lipoprotein particle receptor binding|SH3 domain binding|zinc ion binding				0				Epithelial(149;0.00562)|Lung(261;0.0468)|LUSC - Lung squamous cell carcinoma(261;0.0495)|all cancers(144;0.0569)		TTGCCAGAAGGGAATTTCAGC	0.478													11	30					0	0	0.00136819	0	0
VWC2L	402117	broad.mit.edu	37	2	215279197	215279197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:215279197C>T	uc002vet.2	+	2	410	c.280C>T	c.(280-282)CAC>TAC	p.H94Y	VWC2L_uc010zjl.1_Missense_Mutation_p.H94Y	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	94	VWFC 1.					extracellular region					0						CCCTAAAATTCACCCAAAGTG	0.418													6	14					0	0	0.00307968	0	0
ABCA12	26154	broad.mit.edu	37	2	215882755	215882755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:215882755G>A	uc002vew.2	-	14	1979	c.1759C>T	c.(1759-1761)CCC>TCC	p.P587S	ABCA12_uc002vev.2_Missense_Mutation_p.P269S|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	587					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		tcagggatgggaatggccagc	0.199													21	21					0	0	0.00229938	0	0
ABCA12	26154	broad.mit.edu	37	2	215928821	215928821	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:215928821C>T	uc002vew.2	-	3	505	c.285G>A	c.(283-285)AGG>AGA	p.R95R	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	95					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CAATTCCTTTCCTACGAAGCA	0.438													24	30					0	0	0.00278032	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217281011	217281011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:217281011G>A	uc002vgc.3	+	4	1173	c.843G>A	c.(841-843)ATG>ATA	p.M281I	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.M281I|SMARCAL1_uc010fvg.2_Missense_Mutation_p.M281I	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	281	HARP 1.				chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		ACTTCAGCATGAATGACTATA	0.438									Schimke_Immuno-Osseous_Dysplasia				18	79					0	0	0.00152264	0	0
PNKD	25953	broad.mit.edu	37	2	219206831	219206831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:219206831C>T	uc002vhn.2	+	7	889	c.745C>T	c.(745-747)CTC>TTC	p.L249F	PNKD_uc002vhq.2_Missense_Mutation_p.L225F	NM_015488	NP_056303	Q8N490	PNKD_HUMAN	myofibrillogenesis regulator 1 isoform 1	249						membrane|mitochondrion|nucleus	hydroxyacylglutathione hydrolase activity|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;7.33e-07)|all cancers(144;0.000133)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCCCTCCTGCCTCTTCTCAGG	0.622													12	8					0	0	0.00136819	0	0
STK36	27148	broad.mit.edu	37	2	219559038	219559038	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:219559038C>T	uc002viu.2	+	20	2654	c.2388C>T	c.(2386-2388)GTC>GTT	p.V796V	STK36_uc002viv.2_Silent_p.V796V|STK36_uc002viw.2_5'Flank|STK36_uc002vix.2_5'Flank	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	796					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		ATTCGCATGTCGTCTCTCTTG	0.463													19	82					0	0	0.00188189	0	0
TTLL4	9654	broad.mit.edu	37	2	219603331	219603331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:219603331C>T	uc002viy.2	+	3	1302	c.932C>T	c.(931-933)GCC>GTC	p.A311V	TTLL4_uc010zkl.1_Missense_Mutation_p.A146V|TTLL4_uc010fvx.2_Missense_Mutation_p.A311V	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	311					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		AATAACTTAGCCATGAGGGCA	0.537													28	34					0	0	0.001512	0	0
PRKAG3	53632	broad.mit.edu	37	2	219694767	219694767	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:219694767C>T	uc002vjb.1	-	4	586	c.567G>A	c.(565-567)CAG>CAA	p.Q189Q	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Silent_p.Q189Q|PRKAG3_uc010zko.1_Silent_p.Q185Q	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	189				MQ -> IE (in Ref. 1; CAB65117).	cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGTGTGCTCCTGCATGAAGC	0.612													9	30					0	0	0.000673444	0	0
PRKAG3	53632	broad.mit.edu	37	2	219695037	219695037	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:219695037C>T	uc002vjb.1	-	4	316	c.297G>A	c.(295-297)TTG>TTA	p.L99L	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Silent_p.L99L|PRKAG3_uc010zko.1_Silent_p.L95L	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	99					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAGCTTGAGCCAAGGGTGTGG	0.637													5	21					0	0	0.00116845	0	0
C2orf24	27013	broad.mit.edu	37	2	220040323	220040323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:220040323G>A	uc002vju.3	-	3	402	c.250C>T	c.(250-252)CAT>TAT	p.H84Y	C2orf24_uc002vjv.2_Missense_Mutation_p.H84Y|FAM134A_uc002vjw.3_5'Flank|FAM134A_uc010fwc.2_5'Flank	NM_015680	NP_056495	Q9BV87	CNPD1_HUMAN	hypothetical protein LOC27013	84					regulation of cyclin-dependent protein kinase activity	integral to membrane	protein kinase binding				0		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGGGACACATGAGCTACATAT	0.468													66	73					0	0	0.00361006	0	0
ATG9A	79065	broad.mit.edu	37	2	220088458	220088458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:220088458G>A	uc002vke.1	-	10	1634	c.1448C>T	c.(1447-1449)CCC>CTC	p.P483L	ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Missense_Mutation_p.P483L	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	483	Helical; (Potential).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGTGACAATGGGGCTCAGCAA	0.577													9	39					0	0	0.000442599	0	0
GLB1L	79411	broad.mit.edu	37	2	220103910	220103910	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:220103910G>A	uc002vkm.2	-	11	1205	c.966C>T	c.(964-966)TTC>TTT	p.F322F	GLB1L_uc002vkk.2_Silent_p.F79F|GLB1L_uc010zkx.1_Silent_p.F232F|GLB1L_uc002vkn.2_Silent_p.F322F	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	322					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TAATCGGAAGGAAGCGTCCCT	0.438													14	63					0	0	0.00074312	0	0
DNAJB2	3300	broad.mit.edu	37	2	220147598	220147598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:220147598C>T	uc002vkx.1	+	6	629	c.392C>T	c.(391-393)TCC>TTC	p.S131F	DNAJB2_uc002vkw.1_Missense_Mutation_p.S131F|DNAJB2_uc002vky.2_5'UTR|DNAJB2_uc010zlb.1_5'UTR	NM_006736	NP_006727	P25686	DNJB2_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 2	131					ER-associated protein catabolic process|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of inclusion body assembly|negative regulation of protein deubiquitination|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein folding|response to unfolded protein	inclusion body	heat shock protein binding|Hsp70 protein binding|polyubiquitin binding|proteasome binding|protein binding|unfolded protein binding				0		Renal(207;0.0474)		Epithelial(149;1.97e-06)|all cancers(144;0.00028)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AACCGGGGTTCCCGACACTCA	0.532													15	56					0	0	0.00074312	0	0
PTPRN	5798	broad.mit.edu	37	2	220167060	220167060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:220167060G>A	uc002vkz.2	-	6	882	c.793C>T	c.(793-795)CCA>TCA	p.P265S	PTPRN_uc010zlc.1_Missense_Mutation_p.P175S|PTPRN_uc002vla.2_Missense_Mutation_p.P265S	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	265	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GAAGGCCCTGGAAGGTCCCCG	0.637													8	9					0	0	0.00307968	0	0
PTPRN	5798	broad.mit.edu	37	2	220167309	220167309	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:220167309G>A	uc002vkz.2	-	5	717	c.628C>T	c.(628-630)CTG>TTG	p.L210L	PTPRN_uc010zlc.1_Silent_p.L120L|PTPRN_uc002vla.2_Silent_p.L210L	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	210	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		TGGTGGAACAGGTAGGGCTGC	0.607													16	36					0	0	0.000958276	0	0
COL4A4	1286	broad.mit.edu	37	2	227920696	227920696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:227920696C>T	uc010zlt.1	-	30	3335	c.2681G>A	c.(2680-2682)GGA>GAA	p.G894E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	894	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCCATCATCTCCAAAGGGACC	0.592													8	20					0	0	0.000274275	0	0
COL4A4	1286	broad.mit.edu	37	2	227924858	227924858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:227924858G>A	uc010zlt.1	-	27	2812	c.2158C>T	c.(2158-2160)CCA>TCA	p.P720S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	720	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TGACCAGGTGGACCTGGTATT	0.443													27	44					0	0	0.00209593	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882743	228882743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:228882743C>T	uc002vpq.2	-	7	2874	c.2827G>A	c.(2827-2829)GAA>AAA	p.E943K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E943K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E943K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	943	PKA-RII subunit binding domain (By similarity).					cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GCTGCAATTTCAGTTGCCATG	0.478													23	42					0	0	0.00278032	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883615	228883615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:228883615G>A	uc002vpq.2	-	7	2002	c.1955C>T	c.(1954-1956)TCA>TTA	p.S652L	SPHKAP_uc002vpp.2_Missense_Mutation_p.S652L|SPHKAP_uc010zlx.1_Missense_Mutation_p.S652L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	652						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTGAGACTTTGAAGCAGTTTC	0.463													13	51					0	0	0.00136819	0	0
CAB39	51719	broad.mit.edu	37	2	231683275	231683276	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:231683275_231683276CC>TT	uc002vqx.2	+	9	1314_1315	c.882_883CC>TT	c.(880-885)ATCCTC>ATTTTC	p.L295F	CAB39_uc010fxr.2_Missense_Mutation_p.L295F|CAB39_uc010fxq.2_Missense_Mutation_p.L295F|CAB39_uc002vqy.2_Missense_Mutation_p.L50F	NM_016289	NP_057373	Q9Y376	CAB39_HUMAN	calcium binding protein 39	295					cell cycle arrest|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol	kinase binding			central_nervous_system(1)	1		all_lung(227;4.63e-07)|all_hematologic(139;1.83e-06)|Lung NSC(271;2.11e-05)|Acute lymphoblastic leukemia(138;5.51e-05)|Hepatocellular(293;0.0207)|Lung SC(224;0.187)		all cancers(144;1.64e-12)|Epithelial(121;5.29e-11)|LUSC - Lung squamous cell carcinoma(224;0.0154)|Lung(119;0.0177)|COAD - Colon adenocarcinoma(134;0.226)		TCCTAGACATCCTCCTCAAGAA	0.49													6	40					0	0	6.4e-05	0	0
DIS3L2	129563	broad.mit.edu	37	2	233198570	233198570	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:233198570G>A	uc010fxz.2	+	17	2307	c.2031G>A	c.(2029-2031)TCG>TCA	p.S677S	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA|DIS3L2_uc002vsp.1_5'Flank	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	677							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		ACTTCTGCTCGGGGCTGCTGC	0.657											OREG0015283	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	31					0	0	0.000720815	0	0
NGEF	25791	broad.mit.edu	37	2	233785141	233785141	+	Silent	SNP	C	T	T	rs146092866		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:233785141C>T	uc002vts.2	-	5	929	c.681G>A	c.(679-681)CCG>CCA	p.P227P	NGEF_uc010fyg.1_Silent_p.P135P|NGEF_uc002vtt.2_Silent_p.P135P	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	227	Regulatory region; modulates activity toward RHOA, RAC1 and CDC42 (By similarity).				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		GTGGGCTGGCCGGctcctcct	0.493													16	36					0	0	0.000422831	0	0
INPP5D	3635	broad.mit.edu	37	2	234079751	234079751	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:234079751A>C	uc010zmo.1	+	16	2095	c.1942A>C	c.(1942-1944)AGA>CGA	p.R648R	INPP5D_uc010zmp.1_Silent_p.R647R	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	648					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CCGTTTTGAGAGACTGACTCG	0.507													7	12					0	0	0.000673444	0	0
DGKD	8527	broad.mit.edu	37	2	234368427	234368427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:234368427C>T	uc002vui.1	+	23	2731	c.2719C>T	c.(2719-2721)CTT>TTT	p.L907F	DGKD_uc002vuj.1_Missense_Mutation_p.L863F|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	907					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	GATCTCCATCCTTGGGGATGA	0.567													5	22					0	0	0.00116845	0	0
USP40	55230	broad.mit.edu	37	2	234465579	234465579	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:234465579G>A	uc010zmu.1	-	5	586	c.468C>T	c.(466-468)GAC>GAT	p.D156D	USP40_uc010zmr.1_Silent_p.D168D			Q9NVE5	UBP40_HUMAN	SubName: Full=cDNA FLJ56772, highly similar to Ubiquitin carboxyl-terminal hydrolase 40 (EC 3.1.2.15);	156					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		GATAGATGAGGTCATGACCGG	0.418													31	36					0	0	0.00178596	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545613	234545613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:234545613C>T	uc002vur.2	+	1	491	c.445C>T	c.(445-447)CCT>TCT	p.P149S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.P149S	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	149					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		GTTTCTGGATCCTTTTGATAC	0.383													42	52					0	0	0.00195071	0	0
UGT1A5	54579	broad.mit.edu	37	2	234622120	234622121	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:234622120_234622121GG>AT	uc002vuw.2	+	1	483_484	c.483_484GG>AT	c.(481-486)CTGGCT>CTATCT	p.A162S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Missense_Mutation_p.A162S	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	162					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		CGGCGGTGCTGGCTAAGTACCT	0.495													22	102					0	0	6.4e-05	0	0
TRPM8	79054	broad.mit.edu	37	2	234869676	234869676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:234869676G>A	uc002vvh.2	+	12	1659	c.1619G>A	c.(1618-1620)AGA>AAA	p.R540K	TRPM8_uc010fyj.2_Missense_Mutation_p.R228K	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	540	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	AAGGAAGACAGAAATGGCCGG	0.493													4	15					0	0	0.000602214	0	0
ARL4C	10123	broad.mit.edu	37	2	235404927	235404927	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:235404927C>G	uc002vvn.2	-	1	767	c.304G>C	c.(304-306)GAG>CAG	p.E102Q	ARL4C_uc002vvm.3_Missense_Mutation_p.E102Q	NM_005737	NP_005728	P56559	ARL4C_HUMAN	ADP-ribosylation factor-like 4C	102					endocytic recycling|small GTPase mediated signal transduction	cytoplasm|filopodium|nucleus|plasma membrane	alpha-tubulin binding|GTP binding|GTPase activity			skin(1)	1		Breast(86;0.000596)|Renal(207;0.00339)|all_lung(227;0.00354)|all_hematologic(139;0.0494)|Lung NSC(271;0.0496)|Lung SC(224;0.164)|all_neural(83;0.173)		Epithelial(121;2.6e-19)|BRCA - Breast invasive adenocarcinoma(100;0.000296)|Lung(119;0.002)|LUSC - Lung squamous cell carcinoma(224;0.0048)		TTGGCCTCCTCCAGCCGGTCC	0.657													10	25					0	0	0.000978159	0	0
SH3BP4	23677	broad.mit.edu	37	2	235949919	235949919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:235949919C>T	uc002vvp.2	+	4	899	c.506C>T	c.(505-507)CCA>CTA	p.P169L	SH3BP4_uc010fym.2_Missense_Mutation_p.P169L|SH3BP4_uc002vvq.2_Missense_Mutation_p.P169L	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	169					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		CAGACCAATCCATTTCTGAAT	0.507													30	37					0	0	0.00327116	0	0
CXCR7	57007	broad.mit.edu	37	2	237489867	237489867	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:237489867C>T	uc010fyq.2	+	3	989	c.759C>T	c.(757-759)ATC>ATT	p.I253I	CXCR7_uc002vwd.2_Silent_p.I253I	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	253	Helical; Name=6; (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		GCCGGAAGATCATCTTCTCCT	0.567													12	35					0	0	0.00136819	0	0
COL6A3	1293	broad.mit.edu	37	2	238269788	238269788	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:238269788G>A	uc002vwl.2	-	16	6471	c.6186C>T	c.(6184-6186)GGC>GGT	p.G2062G	COL6A3_uc002vwo.2_Silent_p.G1856G|COL6A3_uc010znj.1_Silent_p.G1455G	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2062	Triple-helical region.|Collagen-like 1.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CACCAGGATAGCCTCGGTAGC	0.463													17	20					0	0	0.000958276	0	0
COL6A3	1293	broad.mit.edu	37	2	238280964	238280964	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:238280964C>T	uc002vwl.2	-	9	3981	c.3696G>A	c.(3694-3696)AGG>AGA	p.R1232R	COL6A3_uc002vwo.2_Silent_p.R1026R|COL6A3_uc010znj.1_Silent_p.R625R|COL6A3_uc002vwq.2_Silent_p.R1026R|COL6A3_uc002vwr.2_Silent_p.R825R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1232	Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGACCACGTCCCTCTTGCCAC	0.542													8	27					0	0	0.000274275	0	0
MLPH	79083	broad.mit.edu	37	2	238449131	238449131	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:238449131C>T	uc002vwt.2	+	10	1472	c.1245C>T	c.(1243-1245)CCC>CCT	p.P415P	MLPH_uc002vws.2_Silent_p.P272P|MLPH_uc010fyt.1_Silent_p.P387P|MLPH_uc002vwu.2_Silent_p.P387P|MLPH_uc002vwv.2_Silent_p.P347P|MLPH_uc002vww.2_Silent_p.P363P|MLPH_uc002vwx.2_Silent_p.P271P|MLPH_uc010fyu.2_Silent_p.P167P	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	415	Potential.						metal ion binding			ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		AGGCAGAGCCCAACAGGGACA	0.622													4	11					0	0	0.00024832	0	0
ILKAP	80895	broad.mit.edu	37	2	239103470	239103470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:239103470G>A	uc002vxv.2	-	2	227	c.97C>T	c.(97-99)CCT>TCT	p.P33S	ILKAP_uc010zns.1_5'UTR|ILKAP_uc002vxw.2_5'UTR|ILKAP_uc010znt.1_5'UTR	NM_030768	NP_110395	Q9H0C8	ILKAP_HUMAN	integrin-linked kinase-associated protein	33						cytoplasm|protein serine/threonine phosphatase complex	metal ion binding|protein binding			ovary(3)	3		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_lung(227;0.152)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;5.49e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.93e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.82e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00012)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0163)		CTGGCCGGAGGGAGGTCATCA	0.473													23	25					0	0	0.000878237	0	0
OTOS	150677	broad.mit.edu	37	2	241078668	241078668	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:241078668G>A	uc002vyv.2	-	4	344	c.189C>T	c.(187-189)ATC>ATT	p.I63I	MYEOV2_uc002vyu.1_5'Flank|MYEOV2_uc010zof.1_5'Flank	NM_148961	NP_683764	Q8NHW6	OTOSP_HUMAN	otospiralin precursor	63						extracellular region					0		all_epithelial(40;2.79e-15)|Breast(86;3.04e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0396)|Lung NSC(271;0.128)|Hepatocellular(293;0.148)|all_hematologic(139;0.158)|Melanoma(123;0.16)		Epithelial(32;2.56e-30)|all cancers(36;7.18e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.37e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.07e-06)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		CCATGTCCTCGATCTGGGGGT	0.622													17	20					0	0	0.000958276	0	0
CAPN10	11132	broad.mit.edu	37	2	241535876	241535876	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:241535876C>T	uc002vzk.1	+	8	1603	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F	CAPN10_uc002vzl.1_Intron|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Silent_p.F345F|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	473	Domain III 1.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		CCAGCACCTTCCTGAAGGACG	0.662													5	25					0	0	0.000602214	0	0
SNED1	25992	broad.mit.edu	37	2	242004773	242004773	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:242004773C>T	uc002wah.1	+	21	2772	c.2772C>T	c.(2770-2772)ATC>ATT	p.I924I	SNED1_uc002wai.1_Silent_p.I159I|SNED1_uc002waj.1_Silent_p.I11I|SNED1_uc002wak.2_Silent_p.I11I	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	924	Fibronectin type-III 1.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		GGGTCTCTATCTCCTGGAACC	0.612													4	11					0	0	0.00024832	0	0
ANGPT4	51378	broad.mit.edu	37	20	858955	858955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:858955C>T	uc002wei.2	-	7	1172	c.1069G>A	c.(1069-1071)GCT>ACT	p.A357T	ANGPT4_uc010zpn.1_Missense_Mutation_p.A351T	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	357	Fibrinogen C-terminal.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TGCTCCCCAGCTGGGTCTCCG	0.647													4	17					0	0	0.00024832	0	0
SIRPG	55423	broad.mit.edu	37	20	1616841	1616841	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:1616841G>A	uc002wfm.1	-	3	806	c.741C>T	c.(739-741)GCC>GCT	p.A247A	SIRPG_uc002wfn.1_Silent_p.A247A|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	247	Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						TACCTCGGATGGCCTCAGACA	0.627													5	32					0	0	0.000602214	0	0
PDYN	5173	broad.mit.edu	37	20	1961226	1961227	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:1961226_1961227CC>TT	uc010gaj.2	-	3	749_750	c.507_508GG>AA	c.(505-510)AAGGAG>AAAAAG	p.E170K	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.E170K|PDYN_uc010zpt.1_Missense_Mutation_p.E15K	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	170					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						TTGACCTGCTCCTTGGGGTCCT	0.594													10	38					0	0	6.4e-05	0	0
TMC2	117532	broad.mit.edu	37	20	2572993	2572993	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:2572993A>G	uc002wgf.1	+	8	887	c.872A>G	c.(871-873)AAG>AGG	p.K291R	TMC2_uc002wgg.1_Missense_Mutation_p.K275R|TMC2_uc010zpw.1_Missense_Mutation_p.K123R|TMC2_uc010zpx.1_Missense_Mutation_p.K122R	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	291	Extracellular (Potential).					integral to membrane				ovary(3)	3						ATTCCCAGAAAGACAGTGCCT	0.438													20	94					0	0	0.00278032	0	0
TMC2	117532	broad.mit.edu	37	20	2621818	2621818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:2621818G>A	uc002wgf.1	+	20	2557	c.2542G>A	c.(2542-2544)GAC>AAC	p.D848N	TMC2_uc002wgg.1_Missense_Mutation_p.D832N	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	848	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CCAGGCCATGGACAAGAAGGC	0.572													15	70					0	0	0.000958276	0	0
PTPRA	5786	broad.mit.edu	37	20	3002824	3002824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:3002824C>T	uc010zqd.1	+	14	1636	c.1319C>T	c.(1318-1320)GCC>GTC	p.A440V	PTPRA_uc002whj.2_Missense_Mutation_p.A429V|PTPRA_uc002whk.2_Missense_Mutation_p.A420V|PTPRA_uc002whl.2_Missense_Mutation_p.A420V|PTPRA_uc002whm.2_Missense_Mutation_p.A196V|PTPRA_uc002whn.2_Missense_Mutation_p.A420V|PTPRA_uc002who.2_Missense_Mutation_p.A92V	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	429	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						AAGGTGAAGGCCTGTAACCCT	0.592													12	53					0	0	0.00316338	0	0
SPEF1	25876	broad.mit.edu	37	20	3759628	3759628	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:3759628G>T	uc002wjj.2	-	4	556	c.388C>A	c.(388-390)CCC>ACC	p.P130T		NM_015417	NP_056232	Q9Y4P9	SPEF1_HUMAN	calponin-homology and microtubule-associated	130						cilium axoneme|cytoplasm|cytoskeleton					0						CCATCCTGGGGAGCCAGCTCC	0.612													6	10					3.59834e-05	0.000100346	0.00116845	1	0
PROKR2	128674	broad.mit.edu	37	20	5294653	5294653	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:5294653C>T	uc010zqw.1	-	1	363	c.363G>A	c.(361-363)TGG>TGA	p.W121*	PROKR2_uc010zqx.1_Nonsense_Mutation_p.W121*|PROKR2_uc010zqy.1_Nonsense_Mutation_p.W121*|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	121	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GGCCATGCTCCCAGGAGAGCT	0.592										HNSCC(71;0.22)			7	30					0	0	0.00307968	0	0
PLCB1	23236	broad.mit.edu	37	20	8130986	8130986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:8130986G>A	uc002wnb.2	+	2	148	c.145G>A	c.(145-147)GGA>AGA	p.G49R	PLCB1_uc010zrb.1_5'UTR|PLCB1_uc010gbv.1_Missense_Mutation_p.G49R|PLCB1_uc002wmz.1_Missense_Mutation_p.G49R|PLCB1_uc002wna.2_Missense_Mutation_p.G49R	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	49					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGACCCTCAGGGATTTTTCTT	0.313													17	45					0	0	0.000958276	0	0
PLCB1	23236	broad.mit.edu	37	20	8608941	8608941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:8608941G>A	uc002wnb.2	+	4	250	c.247G>A	c.(247-249)GAC>AAC	p.D83N	PLCB1_uc010zrb.1_5'UTR|PLCB1_uc010gbv.1_Missense_Mutation_p.D83N|PLCB1_uc002wmz.1_Missense_Mutation_p.D83N|PLCB1_uc002wna.2_Missense_Mutation_p.D83N|PLCB1_uc002wnc.1_5'UTR	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	83					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TATTACCCAGGACCCCAAATT	0.423													4	24					0	0	0.00024832	0	0
PLCB1	23236	broad.mit.edu	37	20	8678311	8678311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:8678311C>T	uc002wnb.2	+	11	1051	c.1048C>T	c.(1048-1050)CGC>TGC	p.R350C	PLCB1_uc010zrb.1_Missense_Mutation_p.R249C|PLCB1_uc002wna.2_Missense_Mutation_p.R350C|PLCB1_uc002wnc.1_Missense_Mutation_p.R249C	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	350	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGAGATGTATCGCCAAGTGCT	0.522													20	84					0	0	0.00188189	0	0
PLCB1	23236	broad.mit.edu	37	20	8741080	8741080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:8741080G>A	uc002wnb.2	+	25	2686	c.2683G>A	c.(2683-2685)GAA>AAA	p.E895K	PLCB1_uc010zrb.1_Missense_Mutation_p.E794K|PLCB1_uc002wna.2_Missense_Mutation_p.E895K|PLCB1_uc002wnc.1_Missense_Mutation_p.E794K|PLCB1_uc002wnd.1_Missense_Mutation_p.E472K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	895					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGCCAAAACAGAAGATCTTAT	0.358													10	53					0	0	0.000673444	0	0
PLCB4	5332	broad.mit.edu	37	20	9365044	9365044	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:9365044C>T	uc002wnf.2	+	13	1186	c.1050C>T	c.(1048-1050)CTC>CTT	p.L350L	PLCB4_uc010gbw.1_Silent_p.L350L|PLCB4_uc010gbx.2_Silent_p.L350L|PLCB4_uc002wne.2_Silent_p.L350L|PLCB4_uc002wnh.2_Silent_p.L197L	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	350	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GACAGGTTCTCCTGGCTGGTT	0.428													16	53					0	0	0.00121646	0	0
PLCB4	5332	broad.mit.edu	37	20	9449315	9449315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:9449315G>A	uc002wnf.2	+	34	3446	c.3310G>A	c.(3310-3312)GAA>AAA	p.E1104K	PLCB4_uc010gbx.2_Missense_Mutation_p.E1116K|PLCB4_uc002wne.2_Missense_Mutation_p.E1104K|PLCB4_uc002wnh.2_Missense_Mutation_p.E951K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1104					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGCAGAACGGGAAAGGTAAGT	0.418													11	52					0	0	0.000978159	0	0
C20orf103	24141	broad.mit.edu	37	20	9510290	9510290	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:9510290G>A	uc002wni.1	+	6	895	c.666G>A	c.(664-666)GAG>GAA	p.E222E	C20orf103_uc010zrc.1_Silent_p.E178E	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	222	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			CCATTGCAGAGCATAAATGCC	0.448													4	17					0	0	0.00116845	0	0
PAK7	57144	broad.mit.edu	37	20	9525085	9525085	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:9525085C>T	uc002wnl.2	-	9	2345	c.1800G>A	c.(1798-1800)AGG>AGA	p.R600R	PAK7_uc002wnk.2_Silent_p.R600R|PAK7_uc002wnj.2_Silent_p.R600R|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	600	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CCAATGATTTCCTCTTCGGCA	0.453													24	44					0	0	0.00229938	0	0
PAK7	57144	broad.mit.edu	37	20	9561213	9561213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:9561213G>A	uc002wnl.2	-	5	1114	c.569C>T	c.(568-570)TCC>TTC	p.S190F	PAK7_uc002wnk.2_Missense_Mutation_p.S190F|PAK7_uc002wnj.2_Missense_Mutation_p.S190F|PAK7_uc010gby.1_Missense_Mutation_p.S190F	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	190	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GGCAAAATCGGATTTCAAAGG	0.473													23	46					0	0	0.00332997	0	0
BTBD3	22903	broad.mit.edu	37	20	11903564	11903564	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:11903564C>T	uc002wnz.2	+	4	1178	c.819C>T	c.(817-819)CTC>CTT	p.L273L	BTBD3_uc002wny.2_Silent_p.L212L|BTBD3_uc002woa.2_Silent_p.L212L|BTBD3_uc010zrf.1_Silent_p.L122L|BTBD3_uc010zrg.1_Silent_p.L122L|BTBD3_uc010zrh.1_Silent_p.L122L	NM_014962	NP_055777	Q9Y2F9	BTBD3_HUMAN	BTB/POZ domain containing protein 3 isoform a	273										ovary(2)|central_nervous_system(1)	3						AAAGTATTCTCCGTAGGGAAA	0.483													9	62					0	0	0.000442599	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029765	13029765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:13029765G>A	uc002wod.1	+	2	579	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	SPTLC3_uc002woc.2_Missense_Mutation_p.R97K	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	97					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GCTGTGGAAAGAAAAGAACAA	0.428													14	41					0	0	0.00244969	0	0
SEL1L2	80343	broad.mit.edu	37	20	13894461	13894461	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:13894461G>A	uc010gcf.2	-	5	598	c.516C>T	c.(514-516)TCC>TCT	p.S172S	SEL1L2_uc002woq.3_Silent_p.S33S|SEL1L2_uc010zrl.1_Silent_p.S172S|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	172	Extracellular (Potential).|Sel1-like 2.					integral to membrane	binding			ovary(2)	2						CTTTAGCCAAGGACTCATATA	0.373													19	33					0	0	0.00278032	0	0
SNRPB2	6629	broad.mit.edu	37	20	16712355	16712355	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:16712355T>G	uc002wph.1	+	2	224	c.8T>G	c.(7-9)ATC>AGC	p.I3S	SNRPB2_uc002wpi.1_Missense_Mutation_p.I3S	NM_003092	NP_003083	P08579	RU2B_HUMAN	small nuclear ribonucleoprotein polypeptide B''	3						catalytic step 2 spliceosome|nucleoplasm|U2 snRNP	nucleotide binding|protein binding|RNA binding			large_intestine(1)	1						AACATGGATATCAGACCAAAT	0.294													23	147					0	0	0.000720815	0	0
BFSP1	631	broad.mit.edu	37	20	17475281	17475281	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:17475281T>C	uc002wpo.2	-	8	1475	c.1436A>G	c.(1435-1437)TAC>TGC	p.Y479C	BFSP1_uc002wpp.2_Missense_Mutation_p.Y354C|BFSP1_uc010zrn.1_Missense_Mutation_p.Y340C|BFSP1_uc010zro.1_Missense_Mutation_p.Y340C	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	479	Tail.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						AGGGTCCACGTAATTGGCATC	0.552													5	34					0	0	0.000602214	0	0
SEC23B	10483	broad.mit.edu	37	20	18511414	18511415	+	Silent	DNP	CC	TA	TA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:18511414_18511415CC>TA	uc002wqz.1	+	10	1643_1644	c.1200_1201CC>TA	c.(1198-1203)TTCCGA>TTTAGA	p.400_401FR>FR	SEC23B_uc002wra.1_Silent_p.400_401FR>FR|SEC23B_uc002wrb.1_Silent_p.400_401FR>FR|SEC23B_uc010zsb.1_Silent_p.382_383FR>FR|SEC23B_uc002wrc.1_Silent_p.400_401FR>FR	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	400_401					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						ATGGAGATTTCCGAATGGCATT	0.277													15	92					0	0	6.4e-05	0	0
C20orf79	140856	broad.mit.edu	37	20	18794539	18794539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:18794539C>T	uc002wrk.2	+	1	170	c.80C>T	c.(79-81)TCA>TTA	p.S27L	uc002wrj.1_Intron	NM_178483	NP_848578	Q9UJQ7	CT079_HUMAN	hypothetical protein LOC140856	27							sterol binding			skin(3)	3						GTTCTGGGTTCAGTTCCAGAA	0.522													8	36					0	0	0.000274275	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665909	19665909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:19665909G>A	uc002wrl.2	+	12	1425	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	410	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						GGCTGGCAACGAAACAgagaa	0.398													7	30					0	0	0.00198382	0	0
C20orf26	26074	broad.mit.edu	37	20	20071504	20071504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:20071504G>A	uc002wru.2	+	7	659	c.583G>A	c.(583-585)GAT>AAT	p.D195N	C20orf26_uc010gcw.1_Missense_Mutation_p.D149N|C20orf26_uc010zse.1_Missense_Mutation_p.D195N|C20orf26_uc010zsf.1_Missense_Mutation_p.D195N	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	195										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AGACCATGACGATCTCATGCC	0.333													21	118					0	0	0.00229938	0	0
CD93	22918	broad.mit.edu	37	20	23066320	23066320	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:23066320G>A	uc002wsv.2	-	1	658	c.510C>T	c.(508-510)TCC>TCT	p.S170S		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	170	Extracellular (Potential).|C-type lectin.				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TACTTCCGGGGGAGCCTGGGC	0.652													6	42					0	0	0.000274275	0	0
CST11	140880	broad.mit.edu	37	20	23432524	23432524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:23432524C>T	uc002wtf.1	-	2	296	c.262G>A	c.(262-264)GAA>AAA	p.E88K	CST11_uc002wtg.1_Intron	NM_130794	NP_570612	Q9H112	CST11_HUMAN	cystatin 11 isoform 1 precursor	88					defense response to bacterium	cytoplasm|nucleus	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					CACTGCATTTCCACATTCAGG	0.562													17	51					0	0	0.000958276	0	0
CST4	1472	broad.mit.edu	37	20	23667728	23667728	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:23667728C>T	uc002wto.1	-	2	395	c.339G>A	c.(337-339)CAG>CAA	p.Q113Q		NM_001899	NP_001890	P01036	CYTS_HUMAN	cystatin S precursor	113						extracellular region	cysteine-type endopeptidase inhibitor activity			breast(1)	1	Lung NSC(19;0.0789)|Colorectal(13;0.0993)|all_lung(19;0.169)					AACGTACCTTCTGCAGTTCTG	0.537													14	70					0	0	0.00152264	0	0
HM13	81502	broad.mit.edu	37	20	30125987	30125987	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:30125987C>T	uc002wwe.2	+	3	402	c.288C>T	c.(286-288)TTC>TTT	p.F96F	HM13_uc002wwc.2_Silent_p.F96F|HM13_uc002wwd.2_Silent_p.F96F|HM13_uc002wwb.1_Silent_p.F96F	NM_030789	NP_110416	Q8TCT9	HM13_HUMAN	minor histocompatibility antigen 13 isoform 1	96	Helical; (Potential).				membrane protein proteolysis	cell surface|endoplasmic reticulum membrane|integral to membrane|plasma membrane	aspartic-type endopeptidase activity|protein binding			breast(1)	1	all_cancers(5;3.44e-05)|Lung NSC(7;4.38e-06)|all_lung(7;7.65e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		all cancers(5;0.000479)|Colorectal(19;0.00202)|COAD - Colon adenocarcinoma(19;0.0264)			CTCAGATATTCTCCCAGGAGT	0.517													6	53					0	0	0.000274275	0	0
FOXS1	2307	broad.mit.edu	37	20	30433048	30433048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:30433048C>T	uc002wwt.1	-	1	373	c.298G>A	c.(298-300)GAC>AAC	p.D100N		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	100	Fork-head.				anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						TCAAACATGTCGTGGCAGTCA	0.677													6	27					0	0	0.00307968	0	0
HCK	3055	broad.mit.edu	37	20	30686817	30686817	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:30686817C>T	uc002wxh.2	+	12	1428	c.1257C>T	c.(1255-1257)TTC>TTT	p.F419F	HCK_uc010gdy.2_Silent_p.F398F|HCK_uc002wxi.2_Silent_p.F397F	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	419	Protein kinase.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGGCCAAGTTCCCCATCAAGT	0.567													11	63					0	0	0.00316338	0	0
TM9SF4	9777	broad.mit.edu	37	20	30745606	30745606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:30745606C>T	uc002wxj.2	+	14	1574	c.1339C>T	c.(1339-1341)CCC>TCC	p.P447S	TM9SF4_uc010zts.1_Missense_Mutation_p.P354S|TM9SF4_uc002wxk.2_Missense_Mutation_p.P430S|TM9SF4_uc010gdz.2_Missense_Mutation_p.P326S	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	447						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGTGCCCTTTCCCACCATGGT	0.627													29	54					0	0	0.000814825	0	0
KIF3B	9371	broad.mit.edu	37	20	30898237	30898237	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:30898237C>T	uc002wxq.2	+	2	824	c.657C>T	c.(655-657)TTC>TTT	p.F219F	KIF3B_uc010ztv.1_Silent_p.F219F|KIF3B_uc010ztw.1_Silent_p.F219F	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	219	Kinesin-motor.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ATGCAATTTTCGTTATCACTA	0.498													6	29					0	0	0.00116845	0	0
ASXL1	171023	broad.mit.edu	37	20	31021701	31021701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:31021701C>T	uc002wxs.2	+	11	2126	c.1700C>T	c.(1699-1701)CCC>CTC	p.P567L	ASXL1_uc010geb.2_Missense_Mutation_p.P458L	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	567					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						AAAGAGGAGCCCAAAGTCCCG	0.512			F|N|Mis		MDS|CMML								17	38					0	0	0.00121646	0	0
DNMT3B	1789	broad.mit.edu	37	20	31395599	31395599	+	Missense_Mutation	SNP	G	A	A	rs121908940		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:31395599G>A	uc002wyc.2	+	23	2773	c.2452G>A	c.(2452-2454)GTG>ATG	p.V818M	DNMT3B_uc002wyd.2_Missense_Mutation_p.V798M|DNMT3B_uc002wye.2_Missense_Mutation_p.V735M|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.V693M|DNMT3B_uc010zua.1_Missense_Mutation_p.V659M|DNMT3B_uc002wyf.2_Missense_Mutation_p.V810M|DNMT3B_uc002wyg.2_Missense_Mutation_p.V454M|DNMT3B_uc010geg.2_Missense_Mutation_p.R77H|DNMT3B_uc010geh.2_RNA	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	818			V -> M (in ICF).		negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						CTACACAGACGTGTCCAACAT	0.582													22	77					0	0	0.00188189	0	0
BPIL3	128859	broad.mit.edu	37	20	31631162	31631162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:31631162G>A	uc010zuc.1	+	14	1318	c.1318G>A	c.(1318-1320)GAC>AAC	p.D440N	BPIL3_uc010zud.1_Missense_Mutation_p.D379N	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	440						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						GGCTGAGCTGGACATAGTAGA	0.507													21	108					0	0	0.00278032	0	0
C20orf186	149954	broad.mit.edu	37	20	31671441	31671441	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:31671441G>A	uc010zue.1	+	3	453	c.438G>A	c.(436-438)AGG>AGA	p.R146R		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	146	Gly-rich.					cytoplasm|extracellular region	lipid binding				0						CTGTGGGCAGGCTTCACCGGC	0.642													10	42					0	0	0.000978159	0	0
SNTA1	6640	broad.mit.edu	37	20	31996540	31996540	+	Silent	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:31996540A>T	uc002wzd.1	-	7	1664	c.1392T>A	c.(1390-1392)CTT>CTA	p.L464L	SNTA1_uc010zuf.1_Silent_p.L389L	NM_003098	NP_003089	Q13424	SNTA1_HUMAN	acidic alpha 1 syntrophin	464	SU.				muscle contraction	cell junction|cytoplasm|cytoskeleton|sarcolemma	actin binding|calmodulin binding			skin(1)	1						AATCCAGGAAAAGGAGACTGG	0.632													7	78					0	0	0.00198382	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32224460	32224460	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:32224460T>C	uc002wzg.1	+	10	1807	c.1270T>C	c.(1270-1272)TTC>CTC	p.F424L	CBFA2T2_uc010zug.1_Missense_Mutation_p.F198L|CBFA2T2_uc002wze.1_Missense_Mutation_p.F415L|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Missense_Mutation_p.F395L|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA|CBFA2T2_uc002wzk.1_5'Flank	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	424						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						TCAGAGAGAGTTCAACAGCAG	0.403													42	170					0	0	0.00361006	0	0
PXMP4	11264	broad.mit.edu	37	20	32298409	32298409	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:32298409G>A	uc002wzv.2	-	3	450	c.327C>T	c.(325-327)TTC>TTT	p.F109F	PXMP4_uc002wzw.2_Intron|PXMP4_uc010zuh.1_Missense_Mutation_p.S116F	NM_007238	NP_009169	Q9Y6I8	PXMP4_HUMAN	peroxisomal membrane protein 4 isoform a	109	Helical; (Potential).					integral to membrane|membrane fraction|mitochondrial inner membrane|peroxisomal membrane	protein transporter activity				0						TACCCCCGAGGAAGGCCGCCA	0.557													5	36					0	0	0.00198382	0	0
FAM83C	128876	broad.mit.edu	37	20	33876305	33876305	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:33876305G>C	uc010zux.1	-	3	883	c.765C>G	c.(763-765)TTC>TTG	p.F255L	FAM83C_uc002xcb.1_Missense_Mutation_p.F79L	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	255										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CAATGAGGACGAACTTCTCCA	0.627													10	47					0	0	0.00244969	0	0
EPB41L1	2036	broad.mit.edu	37	20	34797712	34797712	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:34797712C>T	uc002xfb.2	+	15	2142	c.1971C>T	c.(1969-1971)TTC>TTT	p.F657F	EPB41L1_uc002xeu.2_Silent_p.F583F|EPB41L1_uc010zvo.1_Silent_p.F657F|EPB41L1_uc002xev.2_Silent_p.F657F|EPB41L1_uc002xew.2_Silent_p.F548F|EPB41L1_uc002xex.2_Intron|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Silent_p.F583F|EPB41L1_uc010gfq.2_Silent_p.F756F	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	657					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					GCCTGCTGTTCTCCCGGGATC	0.637													4	15					0	0	0.00024832	0	0
RBL1	5933	broad.mit.edu	37	20	35696431	35696431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:35696431G>A	uc002xgi.2	-	3	528	c.449C>T	c.(448-450)CCA>CTA	p.P150L	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Missense_Mutation_p.P150L|RBL1_uc010gfv.1_RNA	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	150					cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				TTCTTCATATGGATTTTGAAA	0.323													7	161					0	0	0.000274275	0	0
BPI	671	broad.mit.edu	37	20	36940320	36940320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:36940320G>A	uc002xib.2	+	5	655	c.593G>A	c.(592-594)CGA>CAA	p.R198Q		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	198					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				TCTGCGCTTCGAAACAAGATG	0.507													7	35					0	0	0.00307968	0	0
PLCG1	5335	broad.mit.edu	37	20	39788792	39788792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:39788792C>T	uc002xjp.1	+	4	632	c.511C>T	c.(511-513)CGT>TGT	p.R171C	PLCG1_uc002xjo.1_Missense_Mutation_p.R171C	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	171	EF-hand.|Potential.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				TCGTGAGGATCGGTAAGTACT	0.587													6	21					0	0	0.00307968	0	0
LPIN3	64900	broad.mit.edu	37	20	39978903	39978904	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:39978903_39978904CC>TT	uc002xjx.2	+	7	1059_1060	c.968_969CC>TT	c.(967-969)ACC>ATT	p.T323I	LPIN3_uc010ggh.2_Missense_Mutation_p.T324I|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	323					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				CCTCTCCACACCCCAGAGACAG	0.609													4	19					0	0	6.4e-05	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991483	39991483	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:39991483C>T	uc002xjy.1	-	4	950	c.726G>A	c.(724-726)GGG>GGA	p.G242G		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	242						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GTGTTAGTGGCCCTCTGGCTC	0.592													10	27					0	0	0.00244969	0	0
CHD6	84181	broad.mit.edu	37	20	40033758	40033758	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:40033758G>A	uc002xka.1	-	37	7801	c.7623C>T	c.(7621-7623)CCC>CCT	p.P2541P	CHD6_uc002xjz.1_Silent_p.P78P	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2541					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TGGTTGCCATGGGTGGACTGA	0.557													23	45					0	0	0.00395357	0	0
CHD6	84181	broad.mit.edu	37	20	40034031	40034031	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:40034031G>A	uc002xka.1	-	37	7528	c.7350C>T	c.(7348-7350)CTC>CTT	p.L2450L	CHD6_uc002xjz.1_5'UTR	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2450					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GAGCCTTCAGGAGTTCGCTCC	0.557													11	26					0	0	0.000978159	0	0
CHD6	84181	broad.mit.edu	37	20	40081527	40081527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:40081527G>A	uc002xka.1	-	21	3354	c.3176C>T	c.(3175-3177)TCG>TTG	p.S1059L		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1059					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TTCCTCAAACGAGTTGTAGTG	0.502													7	37					0	0	0.000274275	0	0
PTPRT	11122	broad.mit.edu	37	20	40827919	40827919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:40827919C>T	uc002xkg.2	-	16	2636	c.2452G>A	c.(2452-2454)GAA>AAA	p.E818K	PTPRT_uc010ggj.2_Missense_Mutation_p.E837K|PTPRT_uc010ggi.2_Missense_Mutation_p.E21K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	818	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GAGAAGCCTTCATCATTGCGG	0.567													23	129					0	0	0.00127121	0	0
PTPRT	11122	broad.mit.edu	37	20	40944429	40944429	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:40944429C>T	uc002xkg.2	-	12	2257	c.2073G>A	c.(2071-2073)TGG>TGA	p.W691*	PTPRT_uc010ggj.2_Nonsense_Mutation_p.W691*	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	691	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GAGGAGGGTTCCAGTAGCCAT	0.502													8	43					0	0	0.00307968	0	0
PTPRT	11122	broad.mit.edu	37	20	41385139	41385139	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:41385139C>T	uc002xkg.2	-	6	1006	c.822G>A	c.(820-822)GGG>GGA	p.G274G	PTPRT_uc010ggj.2_Silent_p.G274G	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	274	Extracellular (Potential).|Ig-like C2-type.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACACACCAGACCCACCATCAG	0.587													4	14					0	0	0.00024832	0	0
R3HDML	140902	broad.mit.edu	37	20	42979373	42979373	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:42979373A>C	uc002xls.1	+	5	875	c.703A>C	c.(703-705)AGC>CGC	p.S235R		NM_178491	NP_848586	Q9H3Y0	CRSPL_HUMAN	R3H domain containing-like precursor	235						extracellular region	peptidase inhibitor activity				0		Myeloproliferative disorder(115;0.028)	COAD - Colon adenocarcinoma(18;0.00189)			TTATCAAGGCAGCTGCAATAG	0.557													25	51					0	0	0.000878237	0	0
PKIG	11142	broad.mit.edu	37	20	43246937	43246937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:43246937G>A	uc002xmg.2	+	6	692	c.163G>A	c.(163-165)GAG>AAG	p.E55K	PKIG_uc002xmh.2_Missense_Mutation_p.E55K|PKIG_uc002xmi.2_Missense_Mutation_p.E55K	NM_181805	NP_861521	Q9Y2B9	IPKG_HUMAN	cAMP-dependent protein kinase inhibitor gamma	55							cAMP-dependent protein kinase inhibitor activity|protein binding				0		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.001)|COAD - Colon adenocarcinoma(18;0.00189)			AGGACAGGTGGAGGGAAGCGC	0.537													23	123					0	0	0.001512	0	0
PI3	5266	broad.mit.edu	37	20	43803618	43803618	+	Missense_Mutation	SNP	G	A	A	rs139625638	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:43803618G>A	uc002xng.2	+	1	79	c.55G>A	c.(55-57)GTT>ATT	p.V19I		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	19					copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TGGGACGCTGGTTCTAGAGGC	0.587													14	19					0	0	0.00316338	0	0
SEMG2	6407	broad.mit.edu	37	20	43850541	43850541	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:43850541C>T	uc010ggz.2	+	2	325	c.268C>T	c.(268-270)CTA>TTA	p.L90L	SEMG2_uc002xnk.2_Silent_p.L90L|SEMG2_uc002xnl.2_Silent_p.L90L	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	90	Repeat-rich region.|3-1.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				TTTGAATGCCCTACATAAGGC	0.363													13	72					0	0	0.00316338	0	0
MATN4	8785	broad.mit.edu	37	20	43929961	43929961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:43929961C>T	uc002xnn.2	-	4	953	c.766G>A	c.(766-768)GCC>ACC	p.A256T	MATN4_uc002xno.2_Intron|MATN4_uc002xnp.2_Intron|MATN4_uc010zwr.1_Missense_Mutation_p.A204T|MATN4_uc002xnr.1_Missense_Mutation_p.A256T	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	297	EGF-like 3.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				TGTTGCTCACCCCTGCAGCTC	0.587											OREG0025977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	66					0	0	0.00229938	0	0
WFDC11	259239	broad.mit.edu	37	20	44279156	44279156	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:44279156C>T	uc002xpa.2	-	3	279	c.84G>A	c.(82-84)AGG>AGA	p.R28R		NM_147197	NP_671730	Q8NEX6	WFD11_HUMAN	WAP four-disulfide core domain 11 precursor	28						extracellular region					0		Myeloproliferative disorder(115;0.0122)				ATCTTTTCTTCCTCATTTCTC	0.493													6	49					0	0	0.00198382	0	0
NCOA5	57727	broad.mit.edu	37	20	44692186	44692186	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:44692186G>A	uc002xrd.2	-	6	1491	c.963C>T	c.(961-963)ATC>ATT	p.I321I	NCOA5_uc002xrc.2_Silent_p.I209I|NCOA5_uc002xre.2_Silent_p.I321I	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	321					regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				TTTCCTGCAGGATGGCTTCAT	0.582													6	26					0	0	0.00198382	0	0
CDH22	64405	broad.mit.edu	37	20	44803320	44803320	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:44803320T>G	uc002xrm.2	-	11	2713	c.2312A>C	c.(2311-2313)CAG>CCG	p.Q771P	CDH22_uc010ghk.1_Missense_Mutation_p.Q771P	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	771	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				GGCGTAGGTCTGGAAGGCGTC	0.687													4	3					0	0	0.000602214	0	0
SLC2A10	81031	broad.mit.edu	37	20	45355600	45355600	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:45355600C>G	uc002xsl.2	+	3	1483	c.1386C>G	c.(1384-1386)ATC>ATG	p.I462M		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	462	Helical; Name=11; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				ACCTCTTCATCAGCCTCTCCT	0.383													22	62					0	0	0.00395357	0	0
STAU1	6780	broad.mit.edu	37	20	47733732	47733732	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:47733732G>A	uc002xud.2	-	12	1974	c.1563C>T	c.(1561-1563)ATC>ATT	p.I521I	STAU1_uc002xua.2_Silent_p.I440I|STAU1_uc002xub.2_Silent_p.I446I|STAU1_uc002xuc.2_Silent_p.I440I|STAU1_uc002xue.2_Silent_p.I440I|STAU1_uc002xuf.2_Silent_p.I446I|STAU1_uc002xug.2_Silent_p.I521I	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	521						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			AGGAGCAATTGATAAGAGATA	0.478													8	45					0	0	0.00307968	0	0
DDX27	55661	broad.mit.edu	37	20	47846794	47846794	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:47846794C>G	uc002xuh.2	+	9	1093	c.1032C>G	c.(1030-1032)ATC>ATG	p.I344M		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	344	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ACATCCTCATCGCCACCCCAG	0.622													6	35					0	0	0.00307968	0	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48746086	48746086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:48746086G>A	uc002xvf.2	-	4	636	c.475C>T	c.(475-477)CCT>TCT	p.P159S	TMEM189_uc010zyq.1_RNA|TMEM189_uc002xvg.2_Missense_Mutation_p.P159S|TMEM189_uc010gif.2_Missense_Mutation_p.P156S|TMEM189_uc010zyp.1_Missense_Mutation_p.P84S	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	102					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			GTCTCACCAGGGCTGTGGGTG	0.577													4	16					0	0	0.00116845	0	0
DPM1	8813	broad.mit.edu	37	20	49551729	49551729	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:49551729C>T	uc002xvw.1	-	9	723	c.723G>A	c.(721-723)TTG>TTA	p.L241L	DPM1_uc002xvv.1_Silent_p.L171L|DPM1_uc002xvx.1_RNA	NM_003859	NP_003850	O60762	DPM1_HUMAN	dolichyl-phosphate mannosyltransferase 1	241					C-terminal protein lipidation|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|protein N-linked glycosylation via asparagine|protein O-linked mannosylation	dolichol-phosphate-mannose synthase complex|endoplasmic reticulum membrane|membrane fraction	dolichyl-phosphate beta-D-mannosyltransferase activity|dolichyl-phosphate-mannose-protein mannosyltransferase activity|protein binding			ovary(1)	1						CATTTCCTCCCAACTTGGATT	0.303													45	182					0	0	0.00361006	0	0
MOCS3	27304	broad.mit.edu	37	20	49575512	49575512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:49575512C>T	uc002xvy.1	+	1	150	c.133C>T	c.(133-135)CCG>TCG	p.P45S	DPM1_uc002xvw.1_5'Flank|DPM1_uc002xvx.1_5'Flank	NM_014484	NP_055299	O95396	MOCS3_HUMAN	molybdenum cofactor synthesis 3	45					enzyme active site formation via L-cysteine persulfide|Mo-molybdopterin cofactor biosynthetic process|tRNA thio-modification|tRNA wobble uridine modification|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|nucleotidyltransferase activity|protein binding|thiosulfate sulfurtransferase activity|URM1 activating enzyme activity	p.P45T(1)		skin(2)|ovary(1)	3						ACGGCTGGTTCCGGTGTCGCC	0.622													13	36					0	0	0.000422831	0	0
NFATC2	4773	broad.mit.edu	37	20	50140414	50140414	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:50140414G>A	uc002xwd.2	-	2	586	c.366C>T	c.(364-366)ATC>ATT	p.I122I	NFATC2_uc002xwc.2_Silent_p.I122I|NFATC2_uc010zyv.1_Intron|NFATC2_uc010zyw.1_Intron|NFATC2_uc010zyx.1_Silent_p.I102I|NFATC2_uc010zyy.1_Intron|NFATC2_uc010zyz.1_Intron|NFATC2_uc002xwe.2_Silent_p.I102I	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	122	Trans-activation domain A (TAD-A).				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					CCACTGCCTGGATCAGTTCGT	0.711													8	21					0	0	0.000274275	0	0
SALL4	57167	broad.mit.edu	37	20	50408058	50408058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:50408058C>T	uc002xwh.3	-	2	1065	c.964G>A	c.(964-966)GTG>ATG	p.V322M	SALL4_uc010gii.2_Missense_Mutation_p.V322M|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	322					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TTCGGGAGCACCCGGGTCCCA	0.637													5	26					0	0	0.000602214	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870346	51870346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:51870346G>A	uc002xwo.2	+	2	1305	c.349G>A	c.(349-351)GAA>AAA	p.E117K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	117					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GCTTCCAAACGAAGCACACAA	0.527													8	24					0	0	0.00307968	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870542	51870542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:51870542C>T	uc002xwo.2	+	2	1501	c.545C>T	c.(544-546)CCT>CTT	p.P182L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	182					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CAGAACTTGCCTTCTCGGTCC	0.542													4	34					0	0	0.00024832	0	0
MC3R	4159	broad.mit.edu	37	20	54824480	54824480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:54824480C>T	uc002xxb.2	+	1	693	c.581C>T	c.(580-582)ACC>ATC	p.T194I		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	231	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			TGCCTCATCACCATGTTCTTC	0.582													19	31					0	0	0.00278032	0	0
CSTF1	1477	broad.mit.edu	37	20	54974341	54974341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:54974341C>T	uc002xxl.1	+	5	1164	c.964C>T	c.(964-966)CTC>TTC	p.L322F	CSTF1_uc002xxm.1_Missense_Mutation_p.L322F|CSTF1_uc002xxn.1_Missense_Mutation_p.L322F|CSTF1_uc002xxo.1_Missense_Mutation_p.L265F	NM_001033521	NP_001028693	Q05048	CSTF1_HUMAN	cleavage stimulation factor subunit 1	322	WD 5.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding			central_nervous_system(1)	1			Colorectal(105;0.202)			TAAATACATTCTCTCAAGTGG	0.388													6	94					0	0	0.00116845	0	0
GNAS	2778	broad.mit.edu	37	20	57415441	57415441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:57415441G>A	uc002xzt.2	+	1	647	c.280G>A	c.(280-282)GAG>AAG	p.E94K	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GGCAGACCTTGAGCTGTCCCT	0.622			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			6	27					0	0	0.00198382	0	0
LAMA5	3911	broad.mit.edu	37	20	60909380	60909380	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:60909380G>A	uc002ycq.2	-	22	2668	c.2601C>T	c.(2599-2601)TAC>TAT	p.Y867Y		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	867	Domain IV 1 (domain IV B).				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTCCGGGAGGTAGTGGTCCC	0.677													3	1					0	0	0.00024832	0	0
C20orf11	54994	broad.mit.edu	37	20	61572944	61572944	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:61572944C>T	uc002ydy.2	+	2	267	c.90C>T	c.(88-90)AAC>AAT	p.N30N		NM_017896	NP_060366	Q9NWU2	CT011_HUMAN	chromosome 20 open reading frame 11	30	LisH.					nucleus	protein binding				0	Breast(26;5.68e-08)					CAGACATGAACCGCCTCATCA	0.418													12	85					0	0	0.00185496	0	0
C20orf11	54994	broad.mit.edu	37	20	61576133	61576133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:61576133C>T	uc002ydy.2	+	5	733	c.556C>T	c.(556-558)CGC>TGC	p.R186C		NM_017896	NP_060366	Q9NWU2	CT011_HUMAN	chromosome 20 open reading frame 11	186						nucleus	protein binding				0	Breast(26;5.68e-08)					TTATGAAAATCGCGAGTCAAC	0.413													18	36					0	0	0.000958276	0	0
YTHDF1	54915	broad.mit.edu	37	20	61833700	61833700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:61833700G>A	uc002yeh.2	-	4	1886	c.1592C>T	c.(1591-1593)TCC>TTC	p.S531F	YTHDF1_uc011aaq.1_Missense_Mutation_p.S481F	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	531										ovary(2)	2						GTCGAAGATGGAGGTTGTGTG	0.542													8	52					0	0	0.000274275	0	0
ZNF512B	57473	broad.mit.edu	37	20	62598817	62598817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:62598817G>A	uc002yhl.1	-	3	235	c.181C>T	c.(181-183)CCG>TCG	p.P61S		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	61					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					GGACTTCCCGGGTCAAAGCAG	0.617													32	52					0	0	0.00375469	0	0
OPRL1	4987	broad.mit.edu	37	20	62729677	62729677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:62729677C>T	uc002yic.2	+	5	1040	c.638C>T	c.(637-639)CCG>CTG	p.P213L	OPRL1_uc002yid.2_Missense_Mutation_p.P213L|OPRL1_uc002yif.3_Missense_Mutation_p.P208L	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	213	Helical; Name=5; (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					TACTGGGGCCCGGTGTTTGCC	0.617													6	26					0	0	0.00116845	0	0
BAGE2	85319	broad.mit.edu	37	21	11058197	11058197	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:11058197G>A	uc002yit.1	-	3	451	c.243C>T	c.(241-243)TGC>TGT	p.C81C	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCTGGACAAAGCAGGAAGATG	0.393													8	36					0	0	0.000673444	0	0
LIPI	149998	broad.mit.edu	37	21	15535790	15535790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:15535790G>A	uc002yjm.2	-	7	1029	c.1019C>T	c.(1018-1020)CCT>CTT	p.P340L		NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	319					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GGTCCTAAGAGGTCTTCCTTC	0.299													20	57					0	0	0.00332997	0	0
RBM11	54033	broad.mit.edu	37	21	15592007	15592007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:15592007C>T	uc002yjo.3	+	2	262	c.220C>T	c.(220-222)CGT>TGT	p.R74C	RBM11_uc002yjn.3_5'UTR|RBM11_uc002yjp.3_Intron	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11	74	RRM.						nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		GAATGGAATTCGTTTATATGG	0.388													9	21					0	0	0.00136819	0	0
SAMSN1	64092	broad.mit.edu	37	21	15858346	15858346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:15858346C>T	uc002yju.1	-	8	1091	c.1009G>A	c.(1009-1011)GAC>AAC	p.D337N	SAMSN1_uc010gky.1_Missense_Mutation_p.D169N|SAMSN1_uc002yjv.1_Missense_Mutation_p.D405N	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	337					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		CAACCAGAGTCCCTTGGGCAG	0.398													11	25					0	0	0.000673444	0	0
SAMSN1	64092	broad.mit.edu	37	21	15870776	15870776	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:15870776G>A	uc002yju.1	-	7	988	c.906C>T	c.(904-906)TTC>TTT	p.F302F	SAMSN1_uc010gky.1_Silent_p.F134F|SAMSN1_uc002yjv.1_Silent_p.F370F	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	302	SAM.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		CTTCTTCAAGGAAGTTTTCAG	0.333													13	55					0	0	0.00316338	0	0
KRTAP24-1	643803	broad.mit.edu	37	21	31655091	31655091	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:31655091T>G	uc002ynv.2	-	1	186	c.160A>C	c.(160-162)AAT>CAT	p.N54H		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	54						keratin filament	structural molecule activity				0						AGCCAGAGATTTCCTTGGTAG	0.493													11	26					0	0	0.00244969	0	0
KRTAP19-3	337970	broad.mit.edu	37	21	31864169	31864169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:31864169C>T	uc002yog.1	-	1	107	c.107G>A	c.(106-108)GGT>GAT	p.G36D		NM_181609	NP_853640	Q7Z4W3	KR193_HUMAN	keratin associated protein 19-3	36						intermediate filament					0						ACAGCCAGAACCCAGTCTGCG	0.587													18	59					0	0	0.00121646	0	0
KRTAP11-1	337880	broad.mit.edu	37	21	32253626	32253626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:32253626C>T	uc002yov.2	-	1	249	c.218G>A	c.(217-219)CGA>CAA	p.R73Q		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	73						keratin filament	structural molecule activity			pancreas(1)	1						ACATGAAGTTCGCCGGTAACA	0.552													9	20					0	0	0.000673444	0	0
KRTAP11-1	337880	broad.mit.edu	37	21	32253760	32253760	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:32253760C>T	uc002yov.2	-	1	115	c.84G>A	c.(82-84)ACG>ACA	p.T28T		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	28						keratin filament	structural molecule activity			pancreas(1)	1						TGGTGGAAGTCGTGGTAACTT	0.557													9	25					0	0	0.000673444	0	0
TIAM1	7074	broad.mit.edu	37	21	32492714	32492715	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:32492714_32492715GG>AA	uc002yow.1	-	29	5219_5220	c.4747_4748CC>TT	c.(4747-4749)CCC>TTC	p.P1583F	TIAM1_uc011adk.1_3'UTR|TIAM1_uc011adl.1_Missense_Mutation_p.P1523F	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1583					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TTTCCTGGAGGGGGCAAAGTCT	0.559													6	11					0	0	6.4e-05	0	0
TIAM1	7074	broad.mit.edu	37	21	32575283	32575283	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:32575283G>A	uc002yow.1	-	13	2906	c.2434C>T	c.(2434-2436)CTA>TTA	p.L812L	TIAM1_uc011adk.1_Silent_p.L812L|TIAM1_uc011adl.1_Intron	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	812	RBD.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TTTTCTATTAGAAATTTCAGG	0.393													22	78					0	0	0.000878237	0	0
SYNJ1	8867	broad.mit.edu	37	21	34003813	34003813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:34003813G>A	uc002yqh.2	-	32	4331	c.4331C>T	c.(4330-4332)CCT>CTT	p.P1444L	SYNJ1_uc011ads.1_3'UTR|SYNJ1_uc002yqf.2_3'UTR|SYNJ1_uc002yqg.2_Missense_Mutation_p.P1358L|SYNJ1_uc002yqi.2_3'UTR|SYNJ1_uc002yqe.3_Missense_Mutation_p.P30L	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1405	3 X 3 AA repeats of N-P-F.|Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						GTCACTGAAAGGATTTGTCCT	0.468													4	16					0	0	0.00024832	0	0
CLIC6	54102	broad.mit.edu	37	21	36081723	36081723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:36081723G>A	uc010gmt.1	+	6	1840	c.1840G>A	c.(1840-1842)GAA>AAA	p.E614K	CLIC6_uc002yuf.1_Missense_Mutation_p.E596K	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	614	GST C-terminal.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						TCTGCCTGATGAAATAGATGC	0.473													9	33					0	0	0.000442599	0	0
DOPEY2	9980	broad.mit.edu	37	21	37583878	37583878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:37583878G>A	uc002yvg.2	+	6	788	c.709G>A	c.(709-711)GAC>AAC	p.D237N	DOPEY2_uc011aeb.1_Missense_Mutation_p.D237N	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	237					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CTCCCTGTTGGACTCAAATGT	0.393													24	49					0	0	0.00127121	0	0
SIM2	6493	broad.mit.edu	37	21	38095380	38095380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:38095380G>A	uc002yvr.2	+	5	548	c.492G>A	c.(490-492)ATG>ATA	p.M164I	SIM2_uc002yvq.2_Missense_Mutation_p.M164I	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	164					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						TTCTTCGAATGAAATGTGTCT	0.547													18	43					0	0	0.00395357	0	0
ERG	2078	broad.mit.edu	37	21	39755561	39755561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:39755561G>A	uc010gnw.2	-	12	1520	c.1225C>T	c.(1225-1227)CAC>TAC	p.H409Y	ERG_uc002yxa.2_Missense_Mutation_p.H402Y|ERG_uc011aek.1_Missense_Mutation_p.H310Y|ERG_uc010gnv.2_Missense_Mutation_p.H286Y|ERG_uc010gnx.2_Missense_Mutation_p.H385Y|ERG_uc011ael.1_Missense_Mutation_p.H409Y|ERG_uc002yxb.2_Missense_Mutation_p.H385Y	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	409					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				TCCGGGGGGTGGGGCTGGAGG	0.587													15	31					0	0	0.000422831	0	0
ETS2	2114	broad.mit.edu	37	21	40191548	40191548	+	Silent	SNP	C	T	T	rs113417859	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:40191548C>T	uc002yxg.2	+	8	1129	c.933C>T	c.(931-933)TTC>TTT	p.F311F	ETS2_uc002yxf.2_Silent_p.F451F	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	311					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				TTCCTTCCTTCGAGAGCTTCG	0.552													5	10					0	0	0.000602214	0	0
DSCAM	1826	broad.mit.edu	37	21	41385037	41385037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:41385037G>A	uc002yyq.1	-	33	6415	c.5963C>T	c.(5962-5964)TCC>TTC	p.S1988F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1988	Cytoplasmic (Potential).			HRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQK SRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQR EGAELGQAAKMSSSQESLLDSRGHLKGNNPYAKSYTLV -> IGQVTSYICLHTLEWTFC (in Ref. 1; AAC17966).	cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGATTCTTGGGAGCTGCTCAT	0.562													5	22					0	0	0.000602214	0	0
DSCAM	1826	broad.mit.edu	37	21	41465678	41465678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:41465678C>T	uc002yyq.1	-	21	4272	c.3820G>A	c.(3820-3822)GAA>AAA	p.E1274K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1274	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GTGATGATTTCACTGCTGTTG	0.468													4	8					0	0	0.00024832	0	0
DSCAM	1826	broad.mit.edu	37	21	41725487	41725487	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:41725487A>T	uc002yyq.1	-	5	1291	c.839T>A	c.(838-840)ATT>AAT	p.I280N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	280	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AATGTTCTCAATGAGCAGCCC	0.552													10	20					0	0	0.000978159	0	0
PRDM15	63977	broad.mit.edu	37	21	43242388	43242388	+	Silent	SNP	G	A	A	rs139162933	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:43242388G>A	uc002yzq.1	-	22	2976	c.2865C>T	c.(2863-2865)ATC>ATT	p.I955I	PRDM15_uc002yzo.2_Silent_p.I626I|PRDM15_uc002yzp.2_Silent_p.I646I|PRDM15_uc002yzr.1_Silent_p.I646I	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	955					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCATCAACGCGATGTCCTGGA	0.527													8	33					0	0	0.000673444	0	0
C2CD2	25966	broad.mit.edu	37	21	43325844	43325844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:43325844G>A	uc002yzw.2	-	11	1663	c.1421C>T	c.(1420-1422)TCT>TTT	p.S474F	C2CD2_uc002yzt.2_Missense_Mutation_p.S90F|C2CD2_uc002yzu.2_Missense_Mutation_p.S306F|C2CD2_uc002yzv.2_Missense_Mutation_p.S319F|C2CD2_uc002yzx.1_Missense_Mutation_p.S319F	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	474						cytosol|extracellular region|nucleus				ovary(1)	1						TGTGTCTGAAGAAGAGAGTGT	0.527													8	26					0	0	0.000274275	0	0
TRPM2	7226	broad.mit.edu	37	21	45798946	45798946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:45798946G>A	uc002zet.1	+	9	1294	c.1081G>A	c.(1081-1083)GAC>AAC	p.D361N	TRPM2_uc002zeu.1_Missense_Mutation_p.D361N|TRPM2_uc002zew.1_Missense_Mutation_p.D361N|TRPM2_uc010gpt.1_Missense_Mutation_p.D361N|TRPM2_uc002zex.1_Missense_Mutation_p.D147N	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	361	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCGCGTGGCCGACGTCATTGC	0.617													8	24					0	0	0.00307968	0	0
ITGB2	3689	broad.mit.edu	37	21	46313432	46313432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:46313432G>A	uc002zgd.2	-	9	1155	c.1111C>T	c.(1111-1113)CAC>TAC	p.H371Y	ITGB2_uc002zge.2_Missense_Mutation_p.H371Y|ITGB2_uc002zgf.3_Missense_Mutation_p.H371Y|ITGB2_uc011afl.1_Missense_Mutation_p.H293Y|ITGB2_uc010gpw.2_Missense_Mutation_p.H314Y|ITGB2_uc002zgg.2_Missense_Mutation_p.H371Y	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	371	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	AGGGCGTTGTGATCCAGGAAG	0.597											OREG0026255	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	30					0	0	0.000566183	0	0
COL18A1	80781	broad.mit.edu	37	21	46911158	46911158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr21:46911158G>A	uc011afs.1	+	21	3353	c.3332G>A	c.(3331-3333)GGA>GAA	p.G1111E	COL18A1_uc002zhg.2_Missense_Mutation_p.G696E|COL18A1_uc002zhi.2_Missense_Mutation_p.G876E	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1111	Triple-helical region 4 (COL4).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		GGGAAGGACGGAGTCGGGCAG	0.692													7	18					0	0	0.00307968	0	0
CECR1	51816	broad.mit.edu	37	22	17669312	17669312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:17669312G>A	uc002zmk.1	-	6	1210	c.998C>T	c.(997-999)TCC>TTC	p.S333F	CECR1_uc010gqu.1_Missense_Mutation_p.S333F|CECR1_uc011agi.1_Missense_Mutation_p.S291F|CECR1_uc002zmj.1_Missense_Mutation_p.S92F	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	333					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				GTCATGCAAGGAGTGGCCAGT	0.612													9	39					0	0	0.000978159	0	0
CECR1	51816	broad.mit.edu	37	22	17684577	17684577	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:17684577A>T	uc002zmk.1	-	3	841	c.629T>A	c.(628-630)ATC>AAC	p.I210N	CECR1_uc010gqu.1_Missense_Mutation_p.I210N|CECR1_uc011agi.1_Missense_Mutation_p.I168N|CECR1_uc011agj.1_Missense_Mutation_p.I168N	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	210	Substrate binding.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				GGTGAAGAAGATGGTTTCAAA	0.483													6	27					0	0	0.00116845	0	0
CECR2	27443	broad.mit.edu	37	22	18031748	18031748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:18031748C>T	uc010gqw.1	+	17	4370	c.4244C>T	c.(4243-4245)TCG>TTG	p.S1415L	CECR2_uc010gqv.1_Missense_Mutation_p.S1273L|CECR2_uc002zml.2_Missense_Mutation_p.S1274L|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1457					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		TCGCAGGCCTCGTTCCCAAAG	0.498													15	21					0	0	0.00316338	0	0
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:18844763T>C	uc002zoe.2	+	4		c.2017T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACAGCCTCTGAGGGCAGCA	0.562													2	3					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	22	18846114	18846114	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:18846114G>A	uc002zoe.2	+	5		c.2476G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCTCCTCCACGCACTGGCGCA	0.612													4	10					0	0	0.00024832	0	0
SLC25A1	6576	broad.mit.edu	37	22	19163960	19163960	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:19163960C>T	uc002zoz.2	-	8	910	c.795G>A	c.(793-795)CAG>CAA	p.Q265Q	SLC25A1_uc002zoy.2_Silent_p.Q162Q|SLC25A1_uc002zpa.2_Silent_p.Q213Q	NM_005984	NP_005975	P53007	TXTP_HUMAN	solute carrier family 25 (mitochondrial carrier;	265	Solcar 3.				gluconeogenesis|long-chain fatty-acyl-CoA biosynthetic process|mitochondrial citrate transport|triglyceride biosynthetic process	integral to membrane|mitochondrial inner membrane	citrate transmembrane transporter activity|protein binding				0	Colorectal(54;0.0993)	all_lung(157;9.94e-09)		Lung(27;0.124)		TCTTCAGGATCTGCAAGCCGC	0.642													5	37					0	0	0.00198382	0	0
TXNRD2	10587	broad.mit.edu	37	22	19870984	19870984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:19870984C>T	uc011ahc.1	-	12	983	c.950G>A	c.(949-951)GGT>GAT	p.G317D	TXNRD2_uc002zql.1_Missense_Mutation_p.G71D|TXNRD2_uc002zqm.1_RNA|TXNRD2_uc002zqn.1_RNA|TXNRD2_uc002zqo.1_RNA|TXNRD2_uc002zqp.1_RNA|TXNRD2_uc002zqr.1_Missense_Mutation_p.G316D|TXNRD2_uc002zqj.1_RNA|TXNRD2_uc002zqq.1_5'Flank	NM_006440	NP_006431	Q9NNW7	TRXR2_HUMAN	thioredoxin reductase 2 precursor	317					cell redox homeostasis|response to oxygen radical	mitochondrion	flavin adenine dinucleotide binding|NADP binding|thioredoxin-disulfide reductase activity			ovary(2)	2	Colorectal(54;0.0993)					TGGGACTCGACCTGAAGGAAA	0.493													9	71					0	0	0.000978159	0	0
DGCR8	54487	broad.mit.edu	37	22	20073939	20073940	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:20073939_20073940CC>TT	uc002zri.2	+	2	803_804	c.453_454CC>TT	c.(451-456)CTCCTT>CTTTTT	p.L152F	DGCR8_uc010grz.2_Missense_Mutation_p.L152F|DGCR8_uc002zrj.2_5'Flank	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	152	Necessary for nuclear localization and retention.|Necessary for interaction with NCL.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					GCGGTCTGCTCCTTAGCCCTGT	0.579													15	62					0	0	6.4e-05	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20132801	20132801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:20132801C>T	uc002zrq.2	+	11	2282	c.2176C>T	c.(2176-2178)CCG>TCG	p.P726S	ZDHHC8_uc002zrr.1_Intron|ZDHHC8_uc010gsa.2_Missense_Mutation_p.P532S	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	726	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					TGGGCAGTCCCCGGGCCTGGC	0.632													11	44					0	0	0.000978159	0	0
P2RX6	9127	broad.mit.edu	37	22	21377300	21377300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:21377300C>T	uc010gsu.1	+	5	533	c.533C>T	c.(532-534)CCC>CTC	p.P178L	P2RX6_uc002ztz.2_Missense_Mutation_p.P152L|P2RX6_uc002zua.2_RNA|P2RX6_uc002zuc.1_RNA	NM_005446	NP_005437	O15547	P2RX6_HUMAN	purinergic receptor P2X6 isoform 1	178	Extracellular (Potential).				muscle contraction|protein homooligomerization	cell junction|cytoplasm|integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0						AGTTGGTGCCCCGTGGAGAGT	0.577													22	31					0	0	0.000720815	0	0
PRAME	23532	broad.mit.edu	37	22	22893196	22893196	+	Missense_Mutation	SNP	G	A	A	rs144751598		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:22893196G>A	uc002zwf.2	-	3	493	c.337C>T	c.(337-339)CGC>TGC	p.R113C	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.R97C|PRAME_uc010gtr.2_Missense_Mutation_p.R113C|PRAME_uc002zwg.2_Missense_Mutation_p.R113C|PRAME_uc002zwh.2_Missense_Mutation_p.R113C|PRAME_uc002zwi.2_Missense_Mutation_p.R113C|PRAME_uc002zwj.2_Missense_Mutation_p.R113C|PRAME_uc002zwk.2_Missense_Mutation_p.R113C	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	113					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		TACCTGGGGCGAACCTCCTGG	0.602													9	43					0	0	0.000978159	0	0
SUSD2	56241	broad.mit.edu	37	22	24579502	24579502	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:24579502C>T	uc002zzn.1	+	3	371	c.327C>T	c.(325-327)TCC>TCT	p.S109S		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	109	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ATGTGGACTCCTCCGGGCAAG	0.622													7	31					0	0	0.000274275	0	0
SGSM1	129049	broad.mit.edu	37	22	25294236	25294236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:25294236G>A	uc003abg.2	+	20	2642	c.2485G>A	c.(2485-2487)GAG>AAG	p.E829K	SGSM1_uc003abh.2_Missense_Mutation_p.E768K|SGSM1_uc010guu.1_Missense_Mutation_p.E774K|SGSM1_uc003abj.2_Missense_Mutation_p.E713K|SGSM1_uc003abi.1_Missense_Mutation_p.E749K	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	829	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GGCTCCCCGGGAGGAGCTGGC	0.662													5	14					0	0	0.000602214	0	0
SEZ6L	23544	broad.mit.edu	37	22	26707866	26707867	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:26707866_26707867CC>TT	uc003acb.2	+	8	1970_1971	c.1814_1815CC>TT	c.(1813-1815)GCC>GTT	p.A605V	SEZ6L_uc003acc.2_Missense_Mutation_p.A605V|SEZ6L_uc011akc.1_Missense_Mutation_p.A605V|SEZ6L_uc003acd.2_Missense_Mutation_p.A605V|SEZ6L_uc011akd.1_Missense_Mutation_p.A605V|SEZ6L_uc003ace.2_Missense_Mutation_p.A605V|SEZ6L_uc003acf.1_Missense_Mutation_p.A378V|SEZ6L_uc010gvc.1_Missense_Mutation_p.A378V	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	605	Sushi 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CAGGGCCCGGCCATCATCGAAT	0.584													10	60					0	0	6.4e-05	0	0
ASPHD2	57168	broad.mit.edu	37	22	26829820	26829820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:26829820G>A	uc003acg.2	+	2	636	c.239G>A	c.(238-240)AGG>AAG	p.R80K		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	80	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						CACGTGGGCAGGGAGCAGCCC	0.642													8	27					0	0	0.000442599	0	0
CRYBA4	1413	broad.mit.edu	37	22	27026442	27026442	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:27026442C>T	uc003acz.3	+	6	617	c.582C>T	c.(580-582)ATC>ATT	p.I194I		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	194	Beta/gamma crystallin 'Greek key' 4.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						TCCGCAGGATCCAGCAGTGAA	0.597													5	18					0	0	0.00116845	0	0
ZNRF3	84133	broad.mit.edu	37	22	29445491	29445492	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:29445491_29445492CC>TT	uc003aeg.2	+	8	1187_1188	c.1022_1023CC>TT	c.(1021-1023)TCC>TTT	p.S341F	ZNRF3_uc003aeh.1_Missense_Mutation_p.S341F	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	441	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						CGGGCCTACTCCCCAGCCCACC	0.649													5	22					0	0	6.4e-05	0	0
RHBDD3	25807	broad.mit.edu	37	22	29656401	29656401	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:29656401C>T	uc003aeq.1	-	6	1269	c.897G>A	c.(895-897)GAG>GAA	p.E299E	RHBDD3_uc003aer.1_RNA	NM_012265	NP_036397	Q9Y3P4	RHBD3_HUMAN	rhomboid domain containing 3	299						integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CCTGGATGCCCTCCTGCAGCA	0.667													10	7					0	0	0.000978159	0	0
THOC5	8563	broad.mit.edu	37	22	29927911	29927911	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:29927911G>A	uc003afr.2	-	9	1091	c.756C>T	c.(754-756)GAC>GAT	p.D252D	THOC5_uc003afs.2_Silent_p.D252D|THOC5_uc003aft.2_Silent_p.D252D|THOC5_uc003afu.2_Silent_p.D252D|THOC5_uc010gvo.2_5'UTR|THOC5_uc003afv.1_Silent_p.D252D	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	252					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						TGTGAGCCTGGTCGAATGGCA	0.522													6	26					0	0	0.00116845	0	0
NF2	4771	broad.mit.edu	37	22	30074225	30074225	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:30074225C>A	uc003age.3	+	14	1930	c.1487C>A	c.(1486-1488)CCA>CAA	p.P496Q	NF2_uc003afy.3_Missense_Mutation_p.P496Q|NF2_uc003afz.3_Missense_Mutation_p.P413Q|NF2_uc003agf.3_Missense_Mutation_p.P496Q|NF2_uc003agb.3_Missense_Mutation_p.P419Q|NF2_uc003agc.3_Missense_Mutation_p.P458Q|NF2_uc003agd.3_RNA|NF2_uc003agg.3_Missense_Mutation_p.P496Q|NF2_uc003aga.3_Missense_Mutation_p.P454Q|NF2_uc003agh.3_Missense_Mutation_p.P455Q|NF2_uc003agi.3_Missense_Mutation_p.P413Q|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Missense_Mutation_p.P458Q|NF2_uc010gvp.2_Missense_Mutation_p.P160Q|NF2_uc011akq.1_Missense_Mutation_p.P122Q	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	496					actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.P483fs*17(1)|p.?(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						CCTGACATACCAAGCTTCAAC	0.463			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				7	94					0.00307968	0.00853147	0.00307968	1	0
LIF	3976	broad.mit.edu	37	22	30639958	30639958	+	Silent	SNP	C	T	T	rs146178572		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:30639958C>T	uc003agz.2	-	3	403	c.291G>A	c.(289-291)ACG>ACA	p.T97T	LIF_uc011aks.1_Missense_Mutation_p.G38R|uc003aha.2_5'Flank	NM_002309	NP_002300	P15018	LIF_HUMAN	leukemia inhibitory factor (cholinergic	97					immune response|leukemia inhibitory factor signaling pathway|negative regulation of hormone secretion|positive regulation of cell proliferation|positive regulation of macrophage differentiation|positive regulation of MAPKKK cascade|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of metanephric nephron tubule epithelial cell differentiation		cytokine activity|growth factor activity|leukemia inhibitory factor receptor binding				0			Epithelial(10;0.171)			TGGCCTTCTCCGTGCCGTTGG	0.577													4	19					0	0	0.000602214	0	0
OSM	5008	broad.mit.edu	37	22	30659991	30659991	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:30659991C>T	uc003ahb.2	-	3	692	c.640G>A	c.(640-642)GAG>AAG	p.E214K		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	214					cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			TTCGGGCTCTCCCCCCACTTG	0.637													7	21					0	0	0.00307968	0	0
MORC2	22880	broad.mit.edu	37	22	31333864	31333864	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:31333864T>C	uc003aje.1	-	15	2485	c.1121A>G	c.(1120-1122)TAC>TGC	p.Y374C		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	436							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						CAGGTGCCGGTACTCCTTGGC	0.582													10	34					0	0	0.000673444	0	0
PLA2G3	50487	broad.mit.edu	37	22	31536267	31536267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:31536267C>T	uc003aka.2	-	1	203	c.74G>A	c.(73-75)CGC>CAC	p.R25H		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	25					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						CCTGTACCAGCGGAGGGCAGG	0.657													5	19					0	0	0.000602214	0	0
DEPDC5	9681	broad.mit.edu	37	22	32275563	32275563	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:32275563C>T	uc003als.2	+	37	3907	c.3765C>T	c.(3763-3765)TTC>TTT	p.F1255F	DEPDC5_uc011als.1_Silent_p.F1186F|DEPDC5_uc011alu.1_Silent_p.F1286F|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.F1277F|DEPDC5_uc003alu.2_Silent_p.F704F|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Silent_p.F553F|DEPDC5_uc011alx.1_Silent_p.F103F|DEPDC5_uc010gwk.2_Silent_p.F281F|DEPDC5_uc011aly.1_Silent_p.F103F	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1255					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TGGACGACTTCGCCAGCTTCC	0.587													9	28					0	0	0.000978159	0	0
SLC5A1	6523	broad.mit.edu	37	22	32445982	32445982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:32445982G>A	uc003amc.2	+	2	420	c.188G>A	c.(187-189)CGA>CAA	p.R63Q		NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	63	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						CTGGCAGGCCGAAGTATGGTG	0.453													61	74					0	0	0.00361006	0	0
C22orf28	51493	broad.mit.edu	37	22	32784016	32784016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:32784016G>A	uc003amm.2	-	12	1612	c.1481C>T	c.(1480-1482)GCC>GTC	p.A494V		NM_014306	NP_055121	Q9Y3I0	RTCB_HUMAN	hypothetical protein LOC51493	494					cell-matrix adhesion|substrate adhesion-dependent cell spreading|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|tRNA-splicing ligase complex	ATP binding|metal ion binding|RNA ligase (ATP) activity|vinculin binding				0						CAGTTTAATGGCTTTCTTGCT	0.458													14	51					0	0	0.00316338	0	0
SYN3	8224	broad.mit.edu	37	22	32937673	32937673	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:32937673G>A	uc003amx.2	-	7	960	c.801C>T	c.(799-801)TTC>TTT	p.F267F	SYN3_uc003amy.2_Silent_p.F267F|SYN3_uc003amz.2_Silent_p.F266F	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	267	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TGATGTCCTGGAAGTCAAGCT	0.557													6	29					0	0	0.00116845	0	0
ISX	91464	broad.mit.edu	37	22	35478531	35478531	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:35478531A>C	uc003anj.2	+	2	1201	c.250A>C	c.(250-252)AGG>CGG	p.R84R	ISX_uc011amg.1_Silent_p.R72R	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	84	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GAGCAAGCGGAGGGTTCGTAC	0.557													4	28					0	0	0.00116845	0	0
TOM1	10043	broad.mit.edu	37	22	35717964	35717965	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:35717964_35717965CC>TA	uc003ann.2	+	3	275_276	c.150_151CC>TA	c.(148-153)GCCCTC>GCTATC	p.L51I	TOM1_uc011ami.1_Missense_Mutation_p.L18I|TOM1_uc011amj.1_5'UTR|TOM1_uc003ans.2_Intron|TOM1_uc011amk.1_Intron|TOM1_uc003anp.2_Missense_Mutation_p.L51I|TOM1_uc011aml.1_Missense_Mutation_p.L51I|TOM1_uc003ano.2_RNA|TOM1_uc003anq.2_Missense_Mutation_p.L51I|TOM1_uc003anr.2_5'UTR	NM_005488	NP_005479	O60784	TOM1_HUMAN	target of myb1 isoform 1	51	VHS.				endocytosis|endosome transport|intracellular protein transport	cytosol|early endosome|membrane	protein binding			ovary(1)	1						CCAAAGATGCCCTCCGAGCAGT	0.51													17	30					0	0	6.4e-05	0	0
APOL3	80833	broad.mit.edu	37	22	36538042	36538042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:36538042C>T	uc003aot.2	-	3	453	c.415G>A	c.(415-417)GAA>AAA	p.E139K	APOL3_uc003aoq.2_Missense_Mutation_p.E68K|APOL3_uc003aor.2_Missense_Mutation_p.E68K|APOL3_uc003aos.2_Missense_Mutation_p.E68K|APOL3_uc003aou.2_5'UTR|APOL3_uc003aov.2_5'UTR	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	139					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						TGCACATATTCGTCCTCAATA	0.428													14	38					0	0	0.00185496	0	0
MYH9	4627	broad.mit.edu	37	22	36696966	36696966	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:36696966C>T	uc003apg.2	-	22	3000	c.2769G>A	c.(2767-2769)AGG>AGA	p.R923R	MYH9_uc003aph.1_Silent_p.R787R	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	923	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						CCTCCTCCACCCTGGCCTCTA	0.637			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				31	49					0	0	0.00111076	0	0
IL2RB	3560	broad.mit.edu	37	22	37524624	37524624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:37524624C>T	uc003aqv.1	-	10	1299	c.1168G>A	c.(1168-1170)GAA>AAA	p.E390K		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	390	Cytoplasmic (Potential).				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	TCAGGGTCTTCCTCTGAGTAG	0.607													11	28					0	0	0.00136819	0	0
MFNG	4242	broad.mit.edu	37	22	37876305	37876306	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:37876305_37876306CC>TT	uc003ass.1	-	3	506_507	c.336_337GG>AA	c.(334-339)GCGGAA>GCAAAA	p.E113K	MFNG_uc011ani.1_5'UTR|MFNG_uc011anj.1_Missense_Mutation_p.E99K|CARD10_uc003ast.1_RNA	NM_002405	NP_002396	O00587	MFNG_HUMAN	O-fucosylpeptide	113	Lumenal (Potential).				pattern specification process	extracellular space|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			lung(1)	1	Melanoma(58;0.0574)					TGGCTGTGTTCCGCGGAGCAGT	0.579													6	28					0	0	6.4e-05	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37964152	37964152	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:37964152C>T	uc003asz.3	+	3	904	c.501C>T	c.(499-501)CCC>CCT	p.P167P		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	167					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					CCCGCCTGCCCCGCTCGGAAA	0.637													13	51					0	0	0.000566183	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37964199	37964199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:37964199C>T	uc003asz.3	+	3	951	c.548C>T	c.(547-549)TCT>TTT	p.S183F		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	183					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					TCCTTCCCCTCTGAGCCCGGG	0.637													13	38					0	0	0.00185496	0	0
SH3BP1	23616	broad.mit.edu	37	22	38061867	38061867	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:38061867T>C	uc003atj.1	+	17	2694	c.1807T>C	c.(1807-1809)TTG>CTG	p.L603L	PDXP_uc003atm.1_Silent_p.L294L			Q9Y3L3	3BP1_HUMAN	SubName: Full=cDNA FLJ44925 fis, clone BRAMY3014613, highly similar to Homo sapiens SH3-domain binding protein 1 (SH3BP1);	Error:Variant_position_missing_in_Q9Y3L3_after_alignment					signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GACAGAGGGGTTGGAGGACTG	0.632													6	22					0	0	0.00116845	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121452	38121452	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:38121452C>T	uc003atr.2	+	7	3160	c.2889C>T	c.(2887-2889)TCC>TCT	p.S963S	TRIOBP_uc003atu.2_Silent_p.S791S|TRIOBP_uc003atq.1_Silent_p.S963S|TRIOBP_uc003ats.1_Silent_p.S791S	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	963					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CACCCCAGTCCTCCTTTGGCC	0.642													17	50					0	0	0.000566183	0	0
C22orf23	84645	broad.mit.edu	37	22	38340449	38340449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:38340449C>T	uc003auj.1	-	6	648	c.557G>A	c.(556-558)GGA>GAA	p.G186E	C22orf23_uc003auk.1_Missense_Mutation_p.G186E	NM_032561	NP_115950	Q9BZE7	EVG1_HUMAN	hypothetical protein LOC84645	186											0	Melanoma(58;0.045)					AAGGATGATTCCTCGGTACTG	0.557													13	26					0	0	0.000566183	0	0
TMEM184B	25829	broad.mit.edu	37	22	38641966	38641966	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:38641966G>A	uc003avf.1	-	3	557	c.333C>T	c.(331-333)TTC>TTT	p.F111F	TMEM184B_uc003avg.1_Silent_p.F111F|TMEM184B_uc003avh.1_Silent_p.F45F|TMEM184B_uc010gxl.1_RNA	NM_012264	NP_036396	Q9Y519	T184B_HUMAN	transmembrane protein 184B	111						integral to membrane					0	Melanoma(58;0.045)					GGACGGTGCCGAAGTACACGT	0.637													6	29					0	0	0.00198382	0	0
APOBEC3D	140564	broad.mit.edu	37	22	39427710	39427710	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:39427710G>A	uc011aoe.1	+	6	828	c.774G>A	c.(772-774)GAG>GAA	p.E258E	APOBEC3D_uc011aof.1_Silent_p.E74E|APOBEC3D_uc003awu.3_Silent_p.E74E|APOBEC3D_uc003awt.3_Silent_p.E258E|APOBEC3D_uc010gxu.2_Silent_p.E54E	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	258					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					TGGATCCTGAGACCCATTGTC	0.582													23	77					0	0	0.00148497	0	0
TAB1	10454	broad.mit.edu	37	22	39814842	39814842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:39814842C>T	uc003axt.2	+	6	705	c.656C>T	c.(655-657)TCG>TTG	p.S219L	TAB1_uc003axr.2_Missense_Mutation_p.S295L|TAB1_uc011aok.1_Missense_Mutation_p.S53L|TAB1_uc003axu.1_Missense_Mutation_p.S219L	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	219	PP2C-like.				activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						TTCCGTCTTTCGCAGCTGGGT	0.542													7	23					0	0	0.00198382	0	0
CACNA1I	8911	broad.mit.edu	37	22	40015314	40015314	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:40015314G>A	uc003ayc.2	+	4	483	c.483_splice	c.e4-1	p.G161_splice	CACNA1I_uc003ayd.2_Splice_Site_p.G161_splice|CACNA1I_uc003aye.2_Splice_Site_p.G76_splice|CACNA1I_uc003ayf.2_Splice_Site_p.G76_splice	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,						axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TTTCTCTGCAGGATGGTCGAG	0.632													14	31					0	0	0.00316338	0	0
FAM83F	113828	broad.mit.edu	37	22	40417688	40417688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:40417688C>T	uc003ayk.1	+	4	1268	c.1174C>T	c.(1174-1176)CCC>TCC	p.P392S		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	392										breast(1)	1						GGAGCCCATCCCCTTGGGAGA	0.652													7	23					0	0	0.00198382	0	0
SGSM3	27352	broad.mit.edu	37	22	40804674	40804674	+	Missense_Mutation	SNP	C	T	T	rs141061307		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:40804674C>T	uc003ayu.1	+	17	2035	c.1826C>T	c.(1825-1827)TCC>TTC	p.S609F	SGSM3_uc011aos.1_Missense_Mutation_p.S542F|SGSM3_uc011aot.1_Missense_Mutation_p.S520F|SGSM3_uc010gyd.1_Missense_Mutation_p.S680F	NM_015705	NP_056520	Q96HU1	SGSM3_HUMAN	small G protein signaling modulator 3	609	RUN.				cell cycle arrest|Rap protein signal transduction	cytoplasm	Rab GTPase activator activity|Rab GTPase binding			ovary(2)	2						TCCGTGTATTCCCGTCTGGTG	0.642													15	26					0	0	0.00121646	0	0
SLC25A17	10478	broad.mit.edu	37	22	41175075	41175075	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:41175075T>C	uc003azc.2	-	5	529	c.389A>G	c.(388-390)AAG>AGG	p.K130R	SLC25A17_uc010gyg.2_RNA|SLC25A17_uc011aou.1_Missense_Mutation_p.K93R|SLC25A17_uc003azd.2_RNA|SLC25A17_uc011aov.1_Missense_Mutation_p.K57R	NM_006358	NP_006349	O43808	PM34_HUMAN	solute carrier family 25 (mitochondrial carrier;	130	Lumenal (Potential).|Solcar 2.				fatty acid alpha-oxidation	integral to plasma membrane|mitochondrial inner membrane|peroxisomal membrane	adenine nucleotide transmembrane transporter activity|protein binding				0						TCCTTGAAGCTTCAGTCTGGT	0.383													18	23					0	0	0.000566183	0	0
SREBF2	6721	broad.mit.edu	37	22	42296418	42296418	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:42296418C>T	uc003bbi.2	+	16	2992	c.2823C>T	c.(2821-2823)TCC>TCT	p.S941S	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA|uc011api.1_5'Flank|MIR33A_hsa-mir-33a|MI0000091_5'Flank	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	941	Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						AGCAGAGTTCCTTCTGCCATT	0.622													6	25					0	0	0.000442599	0	0
CYP2D6	1565	broad.mit.edu	37	22	42525764	42525764	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:42525764G>A	uc003bce.2	-	2	418	c.328C>T	c.(328-330)CTG>TTG	p.L110L	uc003bcd.1_Intron|CYP2D6_uc010gyu.2_5'UTR|CYP2D6_uc003bcf.2_Silent_p.L110L	NM_000106	NP_000097	Q6NWU0	Q6NWU0_HUMAN	cytochrome P450, family 2, subfamily D,	110							electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen			breast(1)|skin(1)	2						CCGAAACCCAGGATCTGGGTG	0.697													4	20					0	0	0.000602214	0	0
ARFGAP3	26286	broad.mit.edu	37	22	43195138	43195138	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:43195138G>A	uc003bdd.2	-	15	1660	c.1440C>T	c.(1438-1440)CCC>CCT	p.P480P	ARFGAP3_uc010gzf.2_Silent_p.P436P	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	480					intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						CGGGGGCGTTGGGCAGCACAC	0.567													6	51					0	0	0.00116845	0	0
ARFGAP3	26286	broad.mit.edu	37	22	43243540	43243540	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:43243540A>C	uc003bdd.2	-	2	388	c.168T>G	c.(166-168)GGT>GGG	p.G56G	ARFGAP3_uc010gzf.2_Silent_p.G56G|ARFGAP3_uc011apu.1_Silent_p.G56G	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	56	Arf-GAP.				intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						TCAAGTGAACACCAAGTGACC	0.403													6	14					0	0	0.00116845	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45258226	45258226	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:45258226C>T	uc003bfd.2	+	17	1955	c.1683C>T	c.(1681-1683)ATC>ATT	p.I561I	PRR5-ARHGAP8_uc003bfc.2_Silent_p.I482I|PRR5-ARHGAP8_uc011aqi.1_Silent_p.I473I|PRR5-ARHGAP8_uc011aqj.1_Silent_p.I404I|ARHGAP8_uc010gzv.2_3'UTR|ARHGAP8_uc003bfj.2_Silent_p.I382I|ARHGAP8_uc003bfk.2_Silent_p.I351I|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						TGAATTTGATCTGGCCATCCC	0.532													7	36					0	0	0.00198382	0	0
PHF21B	112885	broad.mit.edu	37	22	45312175	45312175	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:45312175G>A	uc003bfn.2	-	4	700	c.549C>T	c.(547-549)ATC>ATT	p.I183I	PHF21B_uc003bfm.2_Silent_p.I21I|PHF21B_uc011aqk.1_Silent_p.I171I|PHF21B_uc011aql.1_Silent_p.I183I|PHF21B_uc011aqm.1_Silent_p.I171I	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	183							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		TGTCAGCACTGATGAGGAGGG	0.612													11	22					0	0	0.00185496	0	0
ATXN10	25814	broad.mit.edu	37	22	46085626	46085626	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:46085626C>A	uc003bgm.1	+	2	408	c.151C>A	c.(151-153)CTG>ATG	p.L51M	ATXN10_uc011aqt.1_Intron|ATXN10_uc003bgn.1_Translation_Start_Site	NM_013236	NP_037368	Q9UBB4	ATX10_HUMAN	ataxin 10	51					cell death|neuron projection development	dendrite|neuronal cell body|perinuclear region of cytoplasm				ovary(1)|kidney(1)	2		Ovarian(80;0.00973)|all_neural(38;0.0417)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0223)		CCAAAGAGTTCTGGATATCCT	0.388													15	47					4.14922e-12	1.16483e-11	0.000422831	1	0
PPARA	5465	broad.mit.edu	37	22	46614225	46614225	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:46614225C>T	uc003bgw.1	+	6	701	c.435C>T	c.(433-435)ATC>ATT	p.I145I	PPARA_uc003bgx.1_Silent_p.I145I|PPARA_uc010hab.1_Silent_p.I145I|PPARA_uc003bha.2_Silent_p.I145I|PPARA_uc003bhb.1_Silent_p.I145I|PPARA_uc010hac.1_Missense_Mutation_p.S10F	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	145	Nuclear receptor.|NR C4-type.				fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	GCTGCAAGATCCAGAAAAAGA	0.478													33	49					0	0	0.00283554	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653000	46653000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:46653000C>T	uc003bhh.2	-	1	6220	c.6220G>A	c.(6220-6222)GAT>AAT	p.D2074N		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	2074	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AGGCGCACATCGTAGAAGAAT	0.463													8	30					0	0	0.00307968	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654651	46654651	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:46654651A>T	uc003bhh.2	-	1	4569	c.4569T>A	c.(4567-4569)CAT>CAA	p.H1523Q		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1523	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GTGCTTTCCTATGCCTGTGCT	0.498													60	110					0	0	0.00361006	0	0
ZBED4	9889	broad.mit.edu	37	22	50280444	50280444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:50280444C>T	uc003bix.2	+	2	3604	c.3134C>T	c.(3133-3135)GCC>GTC	p.A1045V		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	1045						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		GACGTGGCTGCCTCCCACAGG	0.537													10	45					0	0	0.00136819	0	0
LMF2	91289	broad.mit.edu	37	22	50942286	50942286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:50942286G>A	uc003blp.2	-	13	1797	c.1766C>T	c.(1765-1767)TCC>TTC	p.S589F	LMF2_uc010hba.2_Missense_Mutation_p.S411F|LMF2_uc003blo.2_Missense_Mutation_p.S564F	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	589						endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GTCCCCCAGGGACACGGATGG	0.672													13	9					0	0	0.00316338	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51045390	51045390	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr22:51045390C>T	uc003bmx.2	+	11	2391	c.2274C>T	c.(2272-2274)TCC>TCT	p.S758S	MAPK8IP2_uc003bmy.2_Silent_p.S731S|MAPK8IP2_uc011asc.1_Silent_p.S112S	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	758	PID.				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGAACATCTCCTTCTGCGGCT	0.622													5	28					0	0	0.00198382	0	0
CHL1	10752	broad.mit.edu	37	3	430960	430960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:430960G>A	uc003bou.2	+	19	2496	c.2225G>A	c.(2224-2226)GGA>GAA	p.G742E	CHL1_uc003bot.2_Missense_Mutation_p.G758E|CHL1_uc003bow.1_Missense_Mutation_p.G742E|CHL1_uc011asi.1_Missense_Mutation_p.G758E	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	742	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		gagcagaatggaccaggccta	0.294													3	5					0	0	6.4e-05	0	0
CNTN6	27255	broad.mit.edu	37	3	1262427	1262427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:1262427C>T	uc003boz.2	+	3	379	c.112C>T	c.(112-114)CCT>TCT	p.P38S	CNTN6_uc010hbo.2_Missense_Mutation_p.P33S|CNTN6_uc011asj.1_5'UTR|CNTN6_uc003bpa.2_Missense_Mutation_p.P38S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	38	Ig-like C2-type 1.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TGTCATTTTTCCTTTGGATTT	0.398													12	36					0	0	0.000978159	0	0
CNTN4	152330	broad.mit.edu	37	3	3084839	3084839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:3084839G>A	uc003bpc.2	+	21	2911	c.2690G>A	c.(2689-2691)CGA>CAA	p.R897Q	CNTN4_uc003bpb.1_Missense_Mutation_p.R568Q|CNTN4_uc003bpe.2_Missense_Mutation_p.R569Q|CNTN4_uc003bpf.2_Missense_Mutation_p.R568Q|CNTN4_uc003bpg.2_Missense_Mutation_p.R153Q	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	897					axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GTGACAACCCGAAAGCCACGT	0.438													6	36					0	0	0.00307968	0	0
ITPR1	3708	broad.mit.edu	37	3	4735216	4735216	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:4735216A>C	uc003bqa.2	+	33	4393	c.4045A>C	c.(4045-4047)AGA>CGA	p.R1349R	ITPR1_uc010hca.1_Silent_p.R1334R|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.R280R	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1358	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CTACAACGACAGAGCCTCTTT	0.517													16	97					0	0	0.000958276	0	0
GRM7	2917	broad.mit.edu	37	3	7340486	7340486	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:7340486G>A	uc003bqm.2	+	3	1126	c.852G>A	c.(850-852)GTG>GTA	p.V284V	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.V284V|GRM7_uc003bql.2_Silent_p.V284V|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	284	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GGGCCGTCGTGATTTTTGCCA	0.453													8	22					0	0	0.000274275	0	0
GRM7	2917	broad.mit.edu	37	3	7348259	7348259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:7348259C>T	uc003bqm.2	+	4	1227	c.953C>T	c.(952-954)TCC>TTC	p.S318F	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.S318F|GRM7_uc003bql.2_Missense_Mutation_p.S318F|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	318	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AGCTGGGGATCCAAAATAAAC	0.498													8	36					0	0	0.00307968	0	0
GRM7	2917	broad.mit.edu	37	3	7494382	7494383	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:7494382_7494383CC>TT	uc003bqm.2	+	6	1537_1538	c.1263_1264CC>TT	c.(1261-1266)GCCCTT>GCTTTT	p.L422F	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.L422F|GRM7_uc003bql.2_Missense_Mutation_p.L422F|GRM7_uc003bqn.1_Missense_Mutation_p.L5F|GRM7_uc010hch.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	422	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TGGCTCACGCCCTTCACCACAT	0.485													5	16					0	0	6.4e-05	0	0
OXTR	5021	broad.mit.edu	37	3	8809232	8809232	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:8809232G>A	uc003brc.2	-	3	1264	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_000916	NP_000907	P30559	OXYR_HUMAN	oxytocin receptor	214	Helical; Name=5; (Potential).				female pregnancy|lactation|muscle contraction	integral to plasma membrane	oxytocin receptor activity|vasopressin receptor activity				0				OV - Ovarian serous cystadenocarcinoma(96;0.15)	Carbetocin(DB01282)	CAGCGAGCACGATGACCGGCA	0.642													6	24					0	0	0.00116845	0	0
SRGAP3	9901	broad.mit.edu	37	3	9055491	9055491	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:9055491G>A	uc003brf.1	-	16	2525	c.1849C>T	c.(1849-1851)CAA>TAA	p.Q617*	SRGAP3_uc003brg.1_Nonsense_Mutation_p.Q593*	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	617	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		AGGATTTGTTGGATCTGGTGC	0.532			T	RAF1	pilocytic astrocytoma								11	32					0	0	0.00185496	0	0
CPNE9	151835	broad.mit.edu	37	3	9759841	9759841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:9759841G>A	uc003bsd.2	+	15	1231	c.1060G>A	c.(1060-1062)GGC>AGC	p.G354S		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	354	VWFA.									ovary(2)	2	Medulloblastoma(99;0.227)					CCCAGCTTATGGCTTTGGGGC	0.582													11	13					0	0	0.00136819	0	0
TTLL3	26140	broad.mit.edu	37	3	9874792	9874792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:9874792C>T	uc003btg.2	+	11	1775	c.1559C>T	c.(1558-1560)GCT>GTT	p.A520V	ARPC4_uc003btc.1_Intron|TTLL3_uc003btd.3_Intron|TTLL3_uc003btf.3_Intron|TTLL3_uc010hco.1_Intron|TTLL3_uc003bth.3_Missense_Mutation_p.A308V|TTLL3_uc011atj.1_Missense_Mutation_p.A456V|TTLL3_uc003btj.3_Intron|TTLL3_uc003bti.3_Missense_Mutation_p.A308V	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	520					axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					CCACAGCCTGCTGTGGAGGTG	0.587													4	44					0	0	0.000602214	0	0
TATDN2	9797	broad.mit.edu	37	3	10291219	10291219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:10291219C>T	uc003bvg.2	+	2	916	c.335C>T	c.(334-336)TCA>TTA	p.S112L	TATDN2_uc003bvf.2_Missense_Mutation_p.S112L|TATDN2_uc011atr.1_Missense_Mutation_p.S112L|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	112						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						TTCCTGTCTTCAGGGGGATCC	0.602													12	39					0	0	0.00185496	0	0
TATDN2	9797	broad.mit.edu	37	3	10312065	10312065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:10312065G>A	uc003bvg.2	+	4	1780	c.1199G>A	c.(1198-1200)AGC>AAC	p.S400N	TATDN2_uc003bvf.2_Missense_Mutation_p.S400N|TATDN2_uc011atr.1_Missense_Mutation_p.S400N|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	400						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						TCCACAGGCAGCAGCAGCAAC	0.552													14	49					0	0	0.00316338	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059101	11059101	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:11059101G>A	uc010hdq.2	+	3	615	c.204G>A	c.(202-204)TGG>TGA	p.W68*		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	68	Helical; Name=1; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GCAACGTCTGGAGGTTCCCCT	0.622													12	43					0	0	0.00244969	0	0
NUP210	23225	broad.mit.edu	37	3	13378289	13378289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:13378289C>T	uc003bxv.1	-	27	3765	c.3682G>A	c.(3682-3684)GAG>AAG	p.E1228K		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1228	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TTACCTACCTCGTGGTGCCGC	0.647													4	10					0	0	0.00024832	0	0
C3orf20	84077	broad.mit.edu	37	3	14763165	14763166	+	Missense_Mutation	DNP	TG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:14763165_14763166TG>AA	uc003byy.2	+	10	1844_1845	c.1440_1441TG>AA	c.(1438-1443)AATGAG>AAAAAG	p.480_481NE>KK	C3orf20_uc003byz.2_Missense_Mutation_p.358_359NE>KK|C3orf20_uc003bza.2_Missense_Mutation_p.358_359NE>KK|C3orf20_uc003bzb.1_5'UTR	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	480_481						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						TACAGGTGAATGAGGAAATGAA	0.515													11	41					0	0	6.4e-05	0	0
COLQ	8292	broad.mit.edu	37	3	15531048	15531048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:15531048C>T	uc003bzx.2	-	2	329	c.203G>A	c.(202-204)AGA>AAA	p.R68K	HACL1_uc011avr.1_RNA|COLQ_uc003bzv.2_Missense_Mutation_p.R58K|COLQ_uc003bzz.2_Missense_Mutation_p.R68K|COLQ_uc010heo.2_Missense_Mutation_p.R68K|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_5'UTR|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	68					acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						TCGGCCACCTCTGAAGAATGG	0.582													5	36					0	0	0.000602214	0	0
GALNTL2	117248	broad.mit.edu	37	3	16217066	16217066	+	Silent	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:16217066G>C	uc003car.3	+	1	883	c.408G>C	c.(406-408)GGG>GGC	p.G136G	GALNTL2_uc003caq.3_Intron	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	136	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						GGGACTGGGGGGCTGATGAGG	0.637													4	16					0	0	0.000602214	0	0
KCNH8	131096	broad.mit.edu	37	3	19295185	19295185	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:19295185G>C	uc003cbk.1	+	2	311	c.116G>C	c.(115-117)GGT>GCT	p.G39A	KCNH8_uc011awe.1_Missense_Mutation_p.G39A|KCNH8_uc010hex.1_5'UTR	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	39	Cytoplasmic (Potential).|PAS.					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GTGGCTAAGGGTTTCCCCATA	0.438													3	57					0	0	6.4e-05	0	0
KCNH8	131096	broad.mit.edu	37	3	19295352	19295352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:19295352G>A	uc003cbk.1	+	2	478	c.283G>A	c.(283-285)GGA>AGA	p.G95R	KCNH8_uc011awe.1_Missense_Mutation_p.G95R|KCNH8_uc010hex.1_5'UTR	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	95	PAC.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						AGAATTCAAAGGAGAAATTAT	0.418													9	39					0	0	0.000274275	0	0
KCNH8	131096	broad.mit.edu	37	3	19575156	19575156	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:19575156C>T	uc003cbk.1	+	16	3084	c.2889C>T	c.(2887-2889)CCC>CCT	p.P963P	KCNH8_uc010hex.1_Silent_p.P424P	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	963	Ser-rich.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GTGTGGATCCCTCCTCTGTGG	0.502													8	32					0	0	0.000442599	0	0
EFHB	151651	broad.mit.edu	37	3	19924107	19924107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:19924107G>A	uc003cbl.3	-	12	2459	c.2263C>T	c.(2263-2265)CCT>TCT	p.P755S	EFHB_uc003cbm.2_Missense_Mutation_p.P625S	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	755					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						AAAATGGTAGGATATAGTAGT	0.393													6	17					0	0	0.00116845	0	0
THRB	7068	broad.mit.edu	37	3	24169139	24169139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:24169139C>T	uc003ccx.3	-	10	1344	c.995G>A	c.(994-996)GGG>GAG	p.G332E	THRB_uc010hfe.2_Missense_Mutation_p.G332E|THRB_uc003ccy.3_Missense_Mutation_p.G332E|THRB_uc003ccz.3_Missense_Mutation_p.G327E	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	332	Ligand-binding.|Interaction with NR2F6.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	TGCCATTTCCCCATTCAAGGT	0.532													5	41					0	0	0.000602214	0	0
THRB	7068	broad.mit.edu	37	3	24185072	24185072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:24185072C>T	uc003ccx.3	-	8	1007	c.658G>A	c.(658-660)GAG>AAG	p.E220K	THRB_uc010hfe.2_Missense_Mutation_p.E220K|THRB_uc003ccy.3_Missense_Mutation_p.E220K|THRB_uc003ccz.3_Missense_Mutation_p.E215K	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	220					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	TTGATGAGCTCCCATTCCTCG	0.562													12	45					0	0	0.00316338	0	0
THRB	7068	broad.mit.edu	37	3	24185123	24185123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:24185123C>T	uc003ccx.3	-	8	956	c.607G>A	c.(607-609)GAG>AAG	p.E203K	THRB_uc010hfe.2_Missense_Mutation_p.E203K|THRB_uc003ccy.3_Missense_Mutation_p.E203K|THRB_uc003ccz.3_Missense_Mutation_p.E198K	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	203					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	TTCTGCAGCTCTTCCCGCCGT	0.577													13	38					0	0	0.00244969	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751356	26751356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:26751356G>A	uc003cdp.2	+	2	782	c.193G>A	c.(193-195)GAA>AAA	p.E65K	LRRC3B_uc003cdq.2_Missense_Mutation_p.E65K	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	65	LRR 1.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						TCTTCCTCCTGAAACAGTCTT	0.418													6	21					0	0	0.00198382	0	0
ZCWPW2	152098	broad.mit.edu	37	3	28562581	28562581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:28562581G>A	uc003ceh.2	+	9	1051	c.883G>A	c.(883-885)GGA>AGA	p.G295R	ZCWPW2_uc003cei.2_Missense_Mutation_p.G295R|ZCWPW2_uc010hfo.2_Missense_Mutation_p.G100R	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	295							zinc ion binding			ovary(2)	2						AGAAGGACATGGAGAGGAAAT	0.383													4	23					0	0	0.000602214	0	0
ZNF860	344787	broad.mit.edu	37	3	32031661	32031661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:32031661C>T	uc011axg.1	+	2	1639	c.1090C>T	c.(1090-1092)CAC>TAC	p.H364Y		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	364	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CACTAGAATTCACACTGGAGA	0.413													7	18					0	0	0.00307968	0	0
GLB1	2720	broad.mit.edu	37	3	33038575	33038576	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:33038575_33038576GG>AA	uc003cfi.1	-	16	2112_2113	c.1995_1996CC>TT	c.(1993-1998)CCCCCG>CCTTCG	p.P666S	GLB1_uc003cfh.1_Missense_Mutation_p.P636S|GLB1_uc003cfj.1_Missense_Mutation_p.P535S|GLB1_uc011axk.1_Missense_Mutation_p.P714S	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	666					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				TTTTTTTGCGGGGGTGGGGGCA	0.48													19	44					0	0	6.4e-05	0	0
SUSD5	26032	broad.mit.edu	37	3	33195379	33195379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:33195379G>A	uc003cfo.1	-	5	1163	c.745C>T	c.(745-747)CGT>TGT	p.R249C		NM_015551	NP_056366	O60279	SUSD5_HUMAN	sushi domain containing 5 precursor	249	Extracellular (Potential).				cell adhesion	integral to membrane	hyaluronic acid binding			ovary(1)|central_nervous_system(1)	2						GAGACCAGACGGTCCTGTTTT	0.562													5	22					0	0	0.00116845	0	0
DCLK3	85443	broad.mit.edu	37	3	36779808	36779808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:36779808C>T	uc003cgi.2	-	2	834	c.343G>A	c.(343-345)GAA>AAA	p.E115K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	115						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TGCCTCTCTTCCAGAGTGGCT	0.557													22	73					0	0	0.000878237	0	0
TRANK1	9881	broad.mit.edu	37	3	36873921	36873921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:36873921C>T	uc003cgj.2	-	12	5673	c.5371G>A	c.(5371-5373)GGG>AGG	p.G1791R		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2341					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCAAATTTCCCTTCTATTCCT	0.483													14	59					0	0	0.00185496	0	0
TRANK1	9881	broad.mit.edu	37	3	36887847	36887847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:36887847G>A	uc003cgj.2	-	7	3603	c.3301C>T	c.(3301-3303)CGG>TGG	p.R1101W		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1651					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AGGTTGACCCGAGCCCGTGTG	0.443													6	18					0	0	0.00198382	0	0
VILL	50853	broad.mit.edu	37	3	38040892	38040892	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38040892C>T	uc003chj.2	+	11	1430	c.1144C>T	c.(1144-1146)CAG>TAG	p.Q382*	VILL_uc003chl.2_Nonsense_Mutation_p.Q382*|VILL_uc010hgu.2_Nonsense_Mutation_p.Q212*	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	382					actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		GTTAGCGGCCCAGCTCAGGAT	0.592													12	42					0	0	0.000422831	0	0
DLEC1	9940	broad.mit.edu	37	3	38136470	38136470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38136470G>A	uc003cho.1	+	13	2041	c.2020G>A	c.(2020-2022)GAC>AAC	p.D674N	DLEC1_uc003chp.1_Missense_Mutation_p.D674N|DLEC1_uc010hgv.1_Missense_Mutation_p.D674N|DLEC1_uc003chr.1_5'UTR|DLEC1_uc010hgx.1_5'Flank|DLEC1_uc003chq.1_Intron	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	674					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GTGCTACCCCGACAAGGAGAC	0.552													8	28					0	0	0.00307968	0	0
SCN5A	6331	broad.mit.edu	37	3	38591907	38591907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38591907C>T	uc003cio.2	-	28	6150	c.5956G>A	c.(5956-5958)GAT>AAT	p.D1986N	SCN5A_uc003cin.2_Missense_Mutation_p.D1985N|SCN5A_uc003cil.3_Missense_Mutation_p.D1986N|SCN5A_uc010hhi.2_Missense_Mutation_p.D1968N|SCN5A_uc010hhk.2_Missense_Mutation_p.D1953N|SCN5A_uc011ayr.1_Missense_Mutation_p.D1932N	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1986					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGGAGGTTATCGCTGGTGGCT	0.607													10	28					0	0	0.000673444	0	0
SCN5A	6331	broad.mit.edu	37	3	38592526	38592526	+	Silent	SNP	C	T	T	rs41311121		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38592526C>T	uc003cio.2	-	28	5531	c.5337G>A	c.(5335-5337)ACG>ACA	p.T1779T	SCN5A_uc003cin.2_Silent_p.T1778T|SCN5A_uc003cil.3_Silent_p.T1779T|SCN5A_uc010hhi.2_Silent_p.T1761T|SCN5A_uc010hhk.2_Silent_p.T1746T|SCN5A_uc011ayr.1_Silent_p.T1725T	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1779					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGCTCTCCTCCGTGGCCACGC	0.512													13	38					0	0	0.000566183	0	0
SCN5A	6331	broad.mit.edu	37	3	38620973	38620973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38620973G>A	uc003cio.2	-	18	3436	c.3242C>T	c.(3241-3243)CCT>CTT	p.P1081L	SCN5A_uc003cin.2_Missense_Mutation_p.P1080L|SCN5A_uc003cil.3_Missense_Mutation_p.P1081L|SCN5A_uc010hhi.2_Missense_Mutation_p.P1081L|SCN5A_uc010hhk.2_Missense_Mutation_p.P1080L|SCN5A_uc011ayr.1_Intron|SCN5A_uc010hhj.1_Missense_Mutation_p.P691L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1081					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ACCGGACACAGGCTGGGATTC	0.657													4	12					0	0	0.000602214	0	0
SCN5A	6331	broad.mit.edu	37	3	38622577	38622577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38622577C>T	uc003cio.2	-	17	3267	c.3073G>A	c.(3073-3075)GAA>AAA	p.E1025K	SCN5A_uc003cin.2_Missense_Mutation_p.E1025K|SCN5A_uc003cil.3_Missense_Mutation_p.E1025K|SCN5A_uc010hhi.2_Missense_Mutation_p.E1025K|SCN5A_uc010hhk.2_Missense_Mutation_p.E1025K|SCN5A_uc011ayr.1_Missense_Mutation_p.E1025K|SCN5A_uc010hhj.1_Missense_Mutation_p.E636K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1025					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AACCGTGTTTCCTTGCGGGTG	0.682													5	11					0	0	0.00198382	0	0
SCN5A	6331	broad.mit.edu	37	3	38639450	38639450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38639450C>T	uc003cio.2	-	14	2226	c.2032G>A	c.(2032-2034)GAG>AAG	p.E678K	SCN5A_uc003cin.2_Missense_Mutation_p.E678K|SCN5A_uc003cil.3_Missense_Mutation_p.E678K|SCN5A_uc010hhi.2_Missense_Mutation_p.E678K|SCN5A_uc010hhk.2_Missense_Mutation_p.E678K|SCN5A_uc011ayr.1_Missense_Mutation_p.E678K|SCN5A_uc010hhj.1_Missense_Mutation_p.E289K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	678					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGGCGAGACTCCTCTAACTCT	0.512													10	24					0	0	0.000673444	0	0
SCN10A	6336	broad.mit.edu	37	3	38739449	38739449	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38739449C>T	uc003ciq.2	-	27	5262	c.5262G>A	c.(5260-5262)GAG>GAA	p.E1754E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1754					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACTGAGTGGCCTCTGGGTCAA	0.493													6	34					0	0	0.00198382	0	0
SCN10A	6336	broad.mit.edu	37	3	38743472	38743472	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38743472C>T	uc003ciq.2	-	26	4515	c.4515G>A	c.(4513-4515)ACG>ACA	p.T1505T		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1505	IV.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCAGAATTTTCGTCTTTTCTT	0.453													11	33					0	0	0.000673444	0	0
SCN11A	11280	broad.mit.edu	37	3	38936198	38936198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:38936198C>T	uc011ays.1	-	15	2860	c.2661G>A	c.(2659-2661)ATG>ATA	p.M887I	SCN11A_uc010hhn.1_Missense_Mutation_p.M3I	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	887					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGCCCCTTTTCATCTCCATGA	0.527													10	33					0	0	0.000673444	0	0
XIRP1	165904	broad.mit.edu	37	3	39225965	39225965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:39225965G>A	uc003cjk.1	-	2	5193	c.4972C>T	c.(4972-4974)CGG>TGG	p.R1658W	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.R341W	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1658							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GGTAAAACCCGAGGAGGGCAC	0.532													20	36					0	0	0.000958276	0	0
XIRP1	165904	broad.mit.edu	37	3	39227456	39227456	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:39227456G>A	uc003cjk.1	-	2	3702	c.3481C>T	c.(3481-3483)CAG>TAG	p.Q1161*	XIRP1_uc003cji.2_Intron|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1161							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GGTTCCCTCTGAGAAAGCTGG	0.647													8	11					0	0	0.00307968	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307170	39307170	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:39307170C>T	uc003cjl.2	-	2	923	c.831G>A	c.(829-831)GTG>GTA	p.V277V		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	277	Helical; Name=7; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		CCGTCTCAGTCACACTGAGGG	0.468													21	75					0	0	0.00278032	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307287	39307287	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:39307287G>A	uc003cjl.2	-	2	806	c.714C>T	c.(712-714)ATC>ATT	p.I238I		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	238	Helical; Name=6; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		GGAAAAACACGATGACCACCA	0.428													21	47					0	0	0.00229938	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307743	39307743	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:39307743G>A	uc003cjl.2	-	2	350	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	86	Helical; Name=2; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		AGTGAGTCCAGAAGGGCAAAG	0.463													8	35					0	0	0.000274275	0	0
MYRIP	25924	broad.mit.edu	37	3	40204221	40204221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:40204221G>A	uc003cka.2	+	5	605	c.470G>A	c.(469-471)GGA>GAA	p.G157E	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Missense_Mutation_p.G157E|MYRIP_uc010hhw.2_Missense_Mutation_p.G68E|MYRIP_uc010hhx.1_Missense_Mutation_p.G157E|MYRIP_uc011ayz.1_5'UTR	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	157	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		ACCCTGCCAGGAGGAAGCCTT	0.433													26	71					0	0	0.00283554	0	0
CTNNB1	1499	broad.mit.edu	37	3	41280628	41280628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:41280628C>T	uc010hia.1	+	16	2297	c.2141C>T	c.(2140-2142)CCT>CTT	p.P714L	CTNNB1_uc003ckp.2_Missense_Mutation_p.P714L|CTNNB1_uc003ckq.2_Missense_Mutation_p.P714L|CTNNB1_uc003ckr.2_Missense_Mutation_p.P714L|CTNNB1_uc011azf.1_Missense_Mutation_p.P707L|CTNNB1_uc011azg.1_Missense_Mutation_p.P642L	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	714					adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding		CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	CTTCTAGATCCTAGCTATCGT	0.502		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				11	29					0	0	0.00185496	0	0
ULK4	54986	broad.mit.edu	37	3	41942229	41942229	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:41942229G>A	uc003ckv.3	-	13	1476	c.1275C>T	c.(1273-1275)ATC>ATT	p.I425I	ULK4_uc003ckw.2_Silent_p.I425I|ULK4_uc003ckx.1_Silent_p.I425I	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	425							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		TTGGATTGTCGATAATGGGGG	0.413													38	160					0	0	0.00195071	0	0
KBTBD5	131377	broad.mit.edu	37	3	42729765	42729766	+	Silent	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:42729765_42729766CC>TT	uc003clv.1	+	2	1384_1385	c.1284_1285CC>TT	c.(1282-1287)TGCCTG>TGTTTG	p.428_429CL>CL		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	428_429	Kelch 2.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GCGAGCGCTGCCTGGACTCGGT	0.663													9	17					0	0	6.4e-05	0	0
ABHD5	51099	broad.mit.edu	37	3	43744062	43744062	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:43744062G>A	uc003cmx.2	+	3	599	c.489G>A	c.(487-489)TCG>TCA	p.S163S		NM_016006	NP_057090	Q8WTS1	ABHD5_HUMAN	abhydrolase domain containing 5	163					cell differentiation|fatty acid metabolic process|negative regulation of sequestering of triglyceride|phosphatidic acid biosynthetic process|positive regulation of triglyceride catabolic process|triglyceride catabolic process	cytosol|lipid particle	1-acylglycerol-3-phosphate O-acyltransferase activity|lysophosphatidic acid acyltransferase activity			ovary(1)	1		Renal(3;0.0134)		KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0687)		CTGCTTACTCGCTGAAGTACC	0.463													34	60					0	0	0.00111076	0	0
FYCO1	79443	broad.mit.edu	37	3	46009867	46009867	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:46009867T>A	uc003cpb.3	-	8	1165	c.959A>T	c.(958-960)CAG>CTG	p.Q320L	FYCO1_uc011bal.1_Missense_Mutation_p.Q320L	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	320					transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		CTCCAGGCCCTGCAGGCATGT	0.622													13	17					0	0	0.00316338	0	0
CCR1	1230	broad.mit.edu	37	3	46245712	46245712	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:46245712G>A	uc003cph.1	-	2	164	c.93C>T	c.(91-93)GCC>GCT	p.A31A	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	31	Extracellular (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GGGCCCCAAAGGCCCTCTCGT	0.542													5	10					0	0	0.000602214	0	0
CCR5	1234	broad.mit.edu	37	3	46415067	46415067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:46415067G>A	uc003cpo.3	+	3	796	c.674G>A	c.(673-675)CGA>CAA	p.R225Q	CCR5_uc010hjd.2_Missense_Mutation_p.R225Q	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	225	Cytoplasmic (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	CTTCGGTGTCGAAATGAGAAG	0.463													39	149					0	0	0.000953801	0	0
KIF9	64147	broad.mit.edu	37	3	47307352	47307352	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:47307352G>A	uc010hjp.2	-	9	1388	c.784C>T	c.(784-786)CTG>TTG	p.L262L	KIF9_uc003cqx.2_Silent_p.L262L|KIF9_uc003cqy.2_Silent_p.L262L|KIF9_uc011bat.1_RNA|KIF9_uc011bau.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	262	Kinesin-motor.				blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		GCTTCCTTCAGGACTTGGCCC	0.522													18	71					0	0	0.00229938	0	0
C3orf75	54859	broad.mit.edu	37	3	47551689	47551689	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:47551689G>A	uc003crk.2	-	3	308	c.189C>T	c.(187-189)ATC>ATT	p.I63I	C3orf75_uc003crj.2_5'UTR|C3orf75_uc011bba.1_Intron|C3orf75_uc003crl.1_Silent_p.I63I	NM_001031703	NP_001026873	Q0PNE2	CC075_HUMAN	transmembrane protein 103	63											0						TCTGTCCCACGATACTGTAGT	0.413													13	54					0	0	0.000566183	0	0
CELSR3	1951	broad.mit.edu	37	3	48697011	48697011	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:48697011G>A	uc003cul.2	-	1	3338	c.3057C>T	c.(3055-3057)GTC>GTT	p.V1019V	CELSR3_uc003cuf.1_Silent_p.V1089V	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1019	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TTACTGTACGGACAATTCCAG	0.552													9	28					0	0	0.000274275	0	0
CELSR3	1951	broad.mit.edu	37	3	48699263	48699263	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:48699263G>T	uc003cul.2	-	1	1086	c.805C>A	c.(805-807)CCC>ACC	p.P269T	CELSR3_uc003cuf.1_Missense_Mutation_p.P339T	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	269	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCCGGCTCGGGAGCTGTCCGA	0.741													9	22					0.000673444	0.00187432	0.000673444	1	0
NCKIPSD	51517	broad.mit.edu	37	3	48719028	48719028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:48719028G>A	uc003cun.2	-	5	878	c.784C>T	c.(784-786)CCC>TCC	p.P262S	NCKIPSD_uc003cum.2_Missense_Mutation_p.P255S|NCKIPSD_uc010hkh.1_Missense_Mutation_p.P262S	NM_016453	NP_057537	Q9NZQ3	SPN90_HUMAN	NCK interacting protein with SH3 domain isoform	262	Pro-rich.				cytoskeleton organization|NLS-bearing substrate import into nucleus|signal transduction	intermediate filament|nucleus	cytoskeletal protein binding|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCCTTGGAGGGAGGGGGCTGG	0.632													6	17					0	0	0.00116845	0	0
BSN	8927	broad.mit.edu	37	3	49690793	49690793	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:49690793C>T	uc003cxe.3	+	5	3918	c.3804C>T	c.(3802-3804)GTC>GTT	p.V1268V		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1268					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGAGCATAGTCCGCATGCGGC	0.557													6	28					0	0	0.00198382	0	0
BSN	8927	broad.mit.edu	37	3	49698253	49698253	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:49698253A>G	uc003cxe.3	+	6	9089	c.8975A>G	c.(8974-8976)AAA>AGA	p.K2992R		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2992					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TCTTTGGCCAAAGACCGGGGT	0.582													7	31					0	0	0.00198382	0	0
BSN	8927	broad.mit.edu	37	3	49699446	49699446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:49699446C>T	uc003cxe.3	+	6	10282	c.10168C>T	c.(10168-10170)CCA>TCA	p.P3390S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3390					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GTCCTACCCCCCACCTGCAGT	0.537													13	45					0	0	0.00136819	0	0
IP6K1	9807	broad.mit.edu	37	3	49765026	49765026	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:49765026G>A	uc003cxm.1	-	6	1170	c.855C>T	c.(853-855)TCC>TCT	p.S285S	IP6K1_uc003cxn.1_Silent_p.S120S|IP6K1_uc011bcv.1_Silent_p.S120S|IP6K1_uc003cxo.2_Missense_Mutation_p.H274Y	NM_153273	NP_695005	Q92551	IP6K1_HUMAN	inositol hexakisphosphate kinase 1 isoform 1	285					phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						AGCCTTCAATGGAGAGCCCAC	0.567													11	21					0	0	0.000673444	0	0
HYAL2	8692	broad.mit.edu	37	3	50355824	50355824	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:50355824G>A	uc003czu.2	-	4	1378	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F	HYAL2_uc003czx.2_Silent_p.F386F|HYAL2_uc003czv.2_Silent_p.F386F|HYAL2_uc003czw.2_Silent_p.F386F	NM_033158	NP_149348	Q12891	HYAL2_HUMAN	hyaluronoglucosaminidase 2 precursor	386	EGF-like.					anchored to membrane|lysosome|plasma membrane	hyalurononglucosaminidase activity|receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)	Hyaluronidase(DB00070)	TGAGATGCAGGAAGGTACTGG	0.632													21	28					0	0	0.000720815	0	0
HYAL2	8692	broad.mit.edu	37	3	50355943	50355943	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:50355943G>A	uc003czu.2	-	4	1259	c.1039C>T	c.(1039-1041)CTG>TTG	p.L347L	HYAL2_uc003czx.2_Silent_p.L347L|HYAL2_uc003czv.2_Silent_p.L347L|HYAL2_uc003czw.2_Silent_p.L347L	NM_033158	NP_149348	Q12891	HYAL2_HUMAN	hyaluronoglucosaminidase 2 precursor	347						anchored to membrane|lysosome|plasma membrane	hyalurononglucosaminidase activity|receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)	Hyaluronidase(DB00070)	AGCCGTGTCAGGTAATCTTTG	0.612													6	31					0	0	0.00198382	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50417203	50417203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:50417203C>T	uc003daq.2	-	10	984	c.946G>A	c.(946-948)GAG>AAG	p.E316K	CACNA2D2_uc003dap.2_Missense_Mutation_p.E316K	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	316	VWFA.|Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TCCAGCATCTCGCAGACAGAT	0.597													9	28					0	0	0.000673444	0	0
DOCK3	1795	broad.mit.edu	37	3	51400070	51400070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:51400070C>T	uc011bds.1	+	49	5281	c.5258C>T	c.(5257-5259)TCC>TTC	p.S1753F		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1753	Ser-rich.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TCAGCACCATCCCAGATGATT	0.562													4	10					0	0	0.00116845	0	0
DOCK3	1795	broad.mit.edu	37	3	51418499	51418499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:51418499C>T	uc011bds.1	+	53	5625	c.5602C>T	c.(5602-5604)CCA>TCA	p.P1868S		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1868						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CCACCCTATCCCAGCCTCCCC	0.602													10	44					0	0	0.00136819	0	0
ITIH1	3697	broad.mit.edu	37	3	52825841	52825841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:52825841G>A	uc003dfs.2	+	22	2674	c.2650G>A	c.(2650-2652)GAG>AAG	p.E884K	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.R475Q|ITIH1_uc010hmo.1_Missense_Mutation_p.E438K|ITIH1_uc003dfu.2_Missense_Mutation_p.E250K|ITIH3_uc003dfv.2_5'Flank|ITIH3_uc011bek.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	884	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GCATGGGGCCGAGGTGTCCTG	0.577													4	6					0	0	0.00024832	0	0
PRKCD	5580	broad.mit.edu	37	3	53223221	53223221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:53223221C>T	uc003dgl.2	+	17	2055	c.1702C>T	c.(1702-1704)CCC>TCC	p.P568S	PRKCD_uc003dgm.2_Missense_Mutation_p.P568S	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	568	Protein kinase.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		GCCACATTATCCCCGCTGGAT	0.483													5	26					0	0	0.00116845	0	0
TKT	7086	broad.mit.edu	37	3	53259838	53259838	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:53259838C>T	uc003dgo.2	-	14	1916	c.1806G>A	c.(1804-1806)CTG>CTA	p.L602L	TKT_uc003dgp.2_Silent_p.L234L|TKT_uc011beo.1_Silent_p.L555L|TKT_uc003dgq.2_Silent_p.L602L|TKT_uc011beq.1_Silent_p.L610L|TKT_uc011ber.1_Silent_p.L404L|TKT_uc011bep.1_Silent_p.L519L	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	602					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	CAAACATCTTCAGCAGCTCAG	0.587													6	18					0	0	0.00307968	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54676173	54676173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:54676173G>A	uc003dhf.2	+	11	1120	c.1072G>A	c.(1072-1074)GGA>AGA	p.G358R	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.G264R|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.G92R|HESRG_uc003dhj.2_5'Flank	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	358	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CACGGGACAAGGAAGTATCTG	0.413													6	16					0	0	0.00116845	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54872646	54872646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:54872646G>A	uc003dhf.2	+	16	1570	c.1522G>A	c.(1522-1524)GAA>AAA	p.E508K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E414K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.E242K	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	508	Extracellular (Potential).|Cache.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CCCAGTGAAAGAACTTCTGAA	0.408													20	72					0	0	0.00395357	0	0
ERC2	26059	broad.mit.edu	37	3	56330352	56330352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:56330352C>T	uc003dhr.1	-	3	1025	c.769G>A	c.(769-771)GAG>AAG	p.E257K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	257	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TCGGTCAGCTCGATGGTGAAG	0.557													20	91					0	0	0.00278032	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56763334	56763334	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:56763334G>A	uc003dig.2	-	10	1714	c.1545C>T	c.(1543-1545)TCC>TCT	p.S515S	ARHGEF3_uc011bew.1_Silent_p.S515S|ARHGEF3_uc003dih.2_Silent_p.S547S|ARHGEF3_uc011bev.1_Silent_p.S486S|ARHGEF3_uc003dif.2_Silent_p.S521S|ARHGEF3_uc010hmy.1_Silent_p.S313S	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	515					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		TGTTTCCACAGGAAGAGTCTG	0.512													16	45					0	0	0.000958276	0	0
FLNB	2317	broad.mit.edu	37	3	58121716	58121716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:58121716G>A	uc003djj.2	+	28	4847	c.4682G>A	c.(4681-4683)GGA>GAA	p.G1561E	FLNB_uc010hne.2_Missense_Mutation_p.G1592E|FLNB_uc003djk.2_Missense_Mutation_p.G1561E|FLNB_uc010hnf.2_Missense_Mutation_p.G1561E|FLNB_uc003djl.2_Missense_Mutation_p.G1392E|FLNB_uc003djm.2_Missense_Mutation_p.G1392E	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1561	Filamin 14.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GACCAAGAAGGAAAACCCAAA	0.423													7	21					0	0	0.00307968	0	0
PTPRG	5793	broad.mit.edu	37	3	61734565	61734565	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:61734565C>T	uc003dlb.2	+	2	818	c.99C>T	c.(97-99)GGC>GGT	p.G33G	PTPRG_uc003dlc.2_Silent_p.G33G|PTPRG_uc003dla.3_RNA	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	33	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		TGACAGAAGGCTACGTTGGGG	0.562													6	15					0	0	0.00116845	0	0
FEZF2	55079	broad.mit.edu	37	3	62356014	62356014	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:62356014T>C	uc003dlh.2	-	4	1331	c.1124A>G	c.(1123-1125)AAC>AGC	p.N375S	FEZF2_uc003dli.2_Missense_Mutation_p.N375S	NM_018008	NP_060478	Q8TBJ5	FEZF2_HUMAN	FEZ family zinc finger 2	375	C2H2-type 4.				transcription, DNA-dependent	nucleus	zinc ion binding			lung(1)	1		Lung SC(41;0.0262)		BRCA - Breast invasive adenocarcinoma(55;0.000221)|KIRC - Kidney renal clear cell carcinoma(15;0.00834)|Kidney(15;0.00957)		GTTCTTGTAGTTCCCTACAAC	0.532													25	43					0	0	0.00106085	0	0
KBTBD8	84541	broad.mit.edu	37	3	67053899	67053899	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:67053899C>T	uc003dmy.2	+	3	561	c.508C>T	c.(508-510)CGA>TGA	p.R170*	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	170	BACK.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		ACTCGGAGATCGATCAAAAGA	0.378													13	38					0	0	0.00316338	0	0
EIF4E3	317649	broad.mit.edu	37	3	71743062	71743062	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:71743062T>C	uc003dov.3	-	5	444	c.436A>G	c.(436-438)ACC>GCC	p.T146A	EIF4E3_uc011bgc.1_Missense_Mutation_p.T40A|EIF4E3_uc003dox.2_Missense_Mutation_p.T40A|EIF4E3_uc011bgd.1_Missense_Mutation_p.T40A|EIF4E3_uc010hoc.2_Missense_Mutation_p.T40A	NM_001134651	NP_001128123	Q8N5X7	IF4E3_HUMAN	eukaryotic translation initiation factor 4E	146					regulation of translation	cytoplasm|mRNA cap binding complex	translation initiation factor activity				0		Prostate(10;0.0166)		BRCA - Breast invasive adenocarcinoma(55;2.56e-05)|Epithelial(33;2.9e-05)|Lung(16;9.28e-05)|LUSC - Lung squamous cell carcinoma(21;0.00227)		TCCCCGATGGTTGCTAACAGC	0.473													4	12					0	0	0.000602214	0	0
GXYLT2	727936	broad.mit.edu	37	3	72971411	72971411	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:72971411C>T	uc003dpg.2	+	3	525	c.525C>T	c.(523-525)ATC>ATT	p.I175I		NM_001080393	NP_001073862	A0PJZ3	GXLT2_HUMAN	glycosyltransferase 8 domain containing 4	175	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						TCTACCCCATCACATTTTCTG	0.453													43	141					0	0	0.00222228	0	0
CNTN3	5067	broad.mit.edu	37	3	74350679	74350679	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:74350679C>T	uc003dpm.1	-	15	2045	c.1965G>A	c.(1963-1965)GGG>GGA	p.G655G		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	655	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TGTGCGTCTTCCCATCGATGA	0.428													18	58					0	0	0.00278032	0	0
CNTN3	5067	broad.mit.edu	37	3	74411160	74411160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:74411160C>T	uc003dpm.1	-	10	1325	c.1245G>A	c.(1243-1245)ATG>ATA	p.M415I		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	415	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		CCAACTTCTTCATTGGATTCT	0.473													10	35					0	0	0.000978159	0	0
EPHA6	285220	broad.mit.edu	37	3	96706323	96706323	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:96706323C>T	uc010how.1	+	3	643	c.600C>T	c.(598-600)TTC>TTT	p.F200F	EPHA6_uc003drp.1_Silent_p.F200F	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	105	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AAATGAAATTCACACTAAGGG	0.393													11	23					0	0	0.000978159	0	0
EPHA6	285220	broad.mit.edu	37	3	96706639	96706639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:96706639C>T	uc010how.1	+	3	959	c.916C>T	c.(916-918)CGT>TGT	p.R306C	EPHA6_uc003drp.1_Missense_Mutation_p.R306C	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	211	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CTTCACTGTTCGTAACTTGGC	0.458													15	63					0	0	0.00316338	0	0
EPHA6	285220	broad.mit.edu	37	3	96706780	96706780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:96706780C>T	uc010how.1	+	3	1100	c.1057C>T	c.(1057-1059)CCT>TCT	p.P353S	EPHA6_uc003drp.1_Missense_Mutation_p.P353S	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	258	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TTGGCTGGTTCCTCTTGGAAG	0.413													14	41					0	0	0.000422831	0	0
EPHA6	285220	broad.mit.edu	37	3	97124000	97124000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:97124000C>T	uc010how.1	+	6	1656	c.1613C>T	c.(1612-1614)TCC>TTC	p.S538F		NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	443	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TCAGCACCTTCCCTGATAGGT	0.393													4	6					0	0	0.000602214	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806295	97806295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:97806295G>A	uc011bgs.1	+	1	279	c.279G>A	c.(277-279)ATG>ATA	p.M93I		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGACTGCAATGATATCCCTAG	0.438													23	73					0	0	0.00229938	0	0
OR5H15	403274	broad.mit.edu	37	3	97887620	97887620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:97887620C>T	uc011bgu.1	+	1	77	c.77C>T	c.(76-78)CCC>CTC	p.P26L		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	26	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGAAAATACCCCTGTTCTTG	0.418													13	64					0	0	0.00244969	0	0
OR5H15	403274	broad.mit.edu	37	3	97888248	97888248	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:97888248G>A	uc011bgu.1	+	1	705	c.705G>A	c.(703-705)AGG>AGA	p.R235R		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGGGTGTAAGGAAAGCCTTTT	0.423													16	19					0	0	0.000422831	0	0
OR5H6	79295	broad.mit.edu	37	3	97983751	97983751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:97983751C>T	uc003dsi.1	+	1	623	c.623C>T	c.(622-624)TCC>TTC	p.S208F		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	208	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TGTACTGATTCCTCTATTAAC	0.299													7	23					0	0	0.000274275	0	0
OR5H2	79310	broad.mit.edu	37	3	98002086	98002086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:98002086C>T	uc003dsj.1	+	1	355	c.355C>T	c.(355-357)CTC>TTC	p.L119F		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AGAATGTTTTCTCTTGGCAAC	0.363													14	47					0	0	0.00185496	0	0
OR5K4	403278	broad.mit.edu	37	3	98073283	98073283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:98073283G>A	uc011bgv.1	+	1	586	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TTCTATTAATGAACTAATGAT	0.308													10	43					0	0	0.000673444	0	0
OR5K1	26339	broad.mit.edu	37	3	98188656	98188656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:98188656C>T	uc003dsm.2	+	1	236	c.236C>T	c.(235-237)CCC>CTC	p.P79L		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						GCTATTACCCCCAAAATGTTA	0.428													9	45					0	0	0.00244969	0	0
GPR15	2838	broad.mit.edu	37	3	98251936	98251936	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:98251936G>A	uc011bgy.1	+	1	1059	c.1059G>A	c.(1057-1059)AGG>AGA	p.R353R		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	353	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		TTGCCAGGAGGAGGAAGAGGT	0.438													7	39					0	0	0.00198382	0	0
COL8A1	1295	broad.mit.edu	37	3	99513236	99513236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:99513236G>A	uc003dtg.1	+	5	736	c.491G>A	c.(490-492)GGA>GAA	p.G164E	COL8A1_uc003dth.1_Missense_Mutation_p.G164E|COL8A1_uc003dti.1_Missense_Mutation_p.G165E	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	164	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGTATGCCTGGAATGCCAGGG	0.562													10	14					0	0	0.000673444	0	0
FILIP1L	11259	broad.mit.edu	37	3	99567893	99567893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:99567893C>T	uc003dtm.2	-	5	3090	c.2627G>A	c.(2626-2628)GGA>GAA	p.G876E	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.G876E|FILIP1L_uc010hpf.2_Missense_Mutation_p.G452E|FILIP1L_uc010hpg.2_Missense_Mutation_p.G636E|FILIP1L_uc003dtn.2_Missense_Mutation_p.G636E|FILIP1L_uc003dtp.1_Missense_Mutation_p.G636E	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	876						cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						TTGCATTTTTCCATTCTGAAG	0.463													19	63					0	0	0.00121646	0	0
BBX	56987	broad.mit.edu	37	3	107497265	107497265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:107497265C>T	uc010hpr.2	+	13	2429	c.2102C>T	c.(2101-2103)CCT>CTT	p.P701L	BBX_uc003dwk.3_Missense_Mutation_p.P701L|BBX_uc003dwl.3_Missense_Mutation_p.L365F|BBX_uc003dwm.3_Missense_Mutation_p.P701L|BBX_uc003dwo.3_Missense_Mutation_p.L51F	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	701	Lys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			AACAGCCTCCCTCAATATAGT	0.408													6	32					0	0	0.00116845	0	0
HHLA2	11148	broad.mit.edu	37	3	108072364	108072364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:108072364C>T	uc003dwy.3	+	4	322	c.155C>T	c.(154-156)TCA>TTA	p.S52L	HHLA2_uc011bhl.1_Intron|HHLA2_uc010hpu.2_Missense_Mutation_p.S52L|HHLA2_uc003dwz.2_Missense_Mutation_p.S52L	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	52						integral to membrane				ovary(1)	1						CTCCCTTCTTCATTTGAGAGG	0.383													4	7					0	0	0.00024832	0	0
HHLA2	11148	broad.mit.edu	37	3	108074059	108074059	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:108074059G>A	uc003dwy.3	+	5	683	c.516G>A	c.(514-516)TGG>TGA	p.W172*	HHLA2_uc011bhl.1_Nonsense_Mutation_p.W108*|HHLA2_uc010hpu.2_Nonsense_Mutation_p.W172*|HHLA2_uc003dwz.2_Nonsense_Mutation_p.W172*	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	172	Ig-like C1-type.					integral to membrane				ovary(1)	1						TTATCACGTGGAAAATGGACA	0.373													5	28					0	0	0.00198382	0	0
MYH15	22989	broad.mit.edu	37	3	108107918	108107918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:108107918G>A	uc003dxa.1	-	39	5551	c.5494C>T	c.(5494-5496)CGT>TGT	p.R1832C		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1832	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TCCAGTTCACGAACCTGCAAC	0.517													5	32					0	0	0.00116845	0	0
MYH15	22989	broad.mit.edu	37	3	108175660	108175660	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:108175660G>A	uc003dxa.1	-	20	2208	c.2151C>T	c.(2149-2151)TGC>TGT	p.C717C		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	717	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AACCTTCACGGCATATCCTAG	0.433													7	41					0	0	0.000274275	0	0
TRAT1	50852	broad.mit.edu	37	3	108549601	108549601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:108549601C>T	uc003dxi.1	+	2	236	c.92C>T	c.(91-93)TCC>TTC	p.S31F	TRAT1_uc010hpx.1_Intron	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	31	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						TTCAATATTTCCCACTATGTG	0.408													16	68					0	0	0.000958276	0	0
TRAT1	50852	broad.mit.edu	37	3	108565969	108565969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:108565969G>A	uc003dxi.1	+	4	351	c.207G>A	c.(205-207)ATG>ATA	p.M69I	TRAT1_uc010hpx.1_Missense_Mutation_p.M32I	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	69	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						TAGATGATATGATTTCAGGTA	0.274													15	69					0	0	0.000422831	0	0
MORC1	27136	broad.mit.edu	37	3	108725917	108725917	+	Missense_Mutation	SNP	C	T	T	rs138435095		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:108725917C>T	uc003dxl.2	-	18	1813	c.1726G>A	c.(1726-1728)GAA>AAA	p.E576K	MORC1_uc011bhn.1_Intron	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	576					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding	p.E576K(1)		ovary(3)|skin(3)|breast(2)	8						ACAGTGATTTCGTCCACTGGT	0.363													13	57					0	0	0.000422831	0	0
DPPA2	151871	broad.mit.edu	37	3	109031453	109031453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:109031453C>T	uc003dxo.2	-	3	367	c.120G>A	c.(118-120)ATG>ATA	p.M40I		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	40						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						CGCTTGGTTCCATTTGTTCCA	0.413													18	97					0	0	0.00152264	0	0
DPPA4	55211	broad.mit.edu	37	3	109052744	109052744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:109052744C>T	uc003dxq.3	-	2	206	c.151G>A	c.(151-153)GAA>AAA	p.E51K	DPPA4_uc011bho.1_Missense_Mutation_p.E51K|DPPA4_uc011bhp.1_Missense_Mutation_p.E51K	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	51						nucleus	protein binding			upper_aerodigestive_tract(1)	1						GACATTTTTTCTTTGGTTCTC	0.428													7	61					0	0	0.000442599	0	0
CD96	10225	broad.mit.edu	37	3	111264196	111264196	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:111264196T>A	uc003dxw.2	+	2	535	c.365T>A	c.(364-366)CTG>CAG	p.L122Q	CD96_uc003dxv.2_Missense_Mutation_p.L122Q|CD96_uc003dxx.2_Missense_Mutation_p.L122Q|CD96_uc010hpy.1_Missense_Mutation_p.L122Q	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	122	Extracellular (Potential).|Ig-like V-type 1.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						ATGCTTGTTCTGTATCCAGAG	0.433									Opitz_Trigonocephaly_syndrome				5	20					0	0	0.00116845	0	0
CD96	10225	broad.mit.edu	37	3	111286448	111286448	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:111286448A>T	uc003dxw.2	+	3	667	c.497A>T	c.(496-498)AAT>ATT	p.N166I	CD96_uc003dxv.2_Missense_Mutation_p.N166I|CD96_uc003dxx.2_Missense_Mutation_p.N166I|CD96_uc010hpy.1_Missense_Mutation_p.N166I	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	166	Extracellular (Potential).|Ig-like V-type 2.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						TGCTTTCAAAATAGCTCCTCA	0.368									Opitz_Trigonocephaly_syndrome				9	34					0	0	0.000442599	0	0
SLC9A10	285335	broad.mit.edu	37	3	111898545	111898545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:111898545C>T	uc003dyu.2	-	23	2974	c.2752G>A	c.(2752-2754)GAA>AAA	p.E918K	SLC9A10_uc011bhu.1_Missense_Mutation_p.E181K|SLC9A10_uc010hqc.2_Missense_Mutation_p.E870K	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	918	cNMP.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TTTGATTTTTCAAGCTGTTCA	0.333													12	45					0	0	0.00185496	0	0
SLC9A10	285335	broad.mit.edu	37	3	111923085	111923085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:111923085G>A	uc003dyu.2	-	17	2374	c.2152C>T	c.(2152-2154)CGT>TGT	p.R718C	SLC9A10_uc011bhu.1_Intron|SLC9A10_uc010hqc.2_Missense_Mutation_p.R670C	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	718	Helical; (Potential).				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						CGTAGTATACGAAAAAATTGA	0.264													7	33					0	0	0.000274275	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113658824	113658824	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:113658824C>T	uc003eaq.3	+	16	1859	c.1783C>T	c.(1783-1785)CAA>TAA	p.Q595*	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc003ear.2_Nonsense_Mutation_p.Q428*|GRAMD1C_uc003eas.2_Nonsense_Mutation_p.Q390*|GRAMD1C_uc003eat.2_Nonsense_Mutation_p.Q254*	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	595						integral to membrane				ovary(2)|skin(1)	3						TCTCCGCCTCCAAGAAGAGAA	0.373													11	70					0	0	0.00244969	0	0
ZDHHC23	254887	broad.mit.edu	37	3	113677249	113677249	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:113677249C>T	uc003eau.2	+	5	1379	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I	ZDHHC23_uc003eav.2_Silent_p.I354I|ZDHHC23_uc003eaw.1_Silent_p.I54I	NM_173570	NP_775841	Q8IYP9	ZDH23_HUMAN	zinc finger, DHHC domain containing 23	360	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			ovary(2)	2						ACTCTGTGATCATCACAGCAG	0.522													16	48					0	0	0.000958276	0	0
ZNF80	7634	broad.mit.edu	37	3	113955375	113955375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:113955375G>A	uc010hqo.2	-	1	1051	c.547C>T	c.(547-549)CAC>TAC	p.H183Y	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	183	C2H2-type 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				TCTCCAGTGTGAATCTTCATG	0.493													22	63					0	0	0.00395357	0	0
POPDC2	64091	broad.mit.edu	37	3	119367329	119367329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:119367329G>A	uc003ecx.1	-	3	921	c.787C>T	c.(787-789)CGC>TGC	p.R263C	POPDC2_uc010hqw.1_Missense_Mutation_p.R263C|POPDC2_uc003ecy.1_Missense_Mutation_p.R81C	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	263						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		CTGGGAAGGCGGATGTCAAAG	0.557													7	38					0	0	0.00198382	0	0
RABL3	285282	broad.mit.edu	37	3	120417366	120417366	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:120417366C>T	uc003edx.2	-	5	468	c.438G>A	c.(436-438)GGG>GGA	p.G146G		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3	146	Small GTPase-like.				small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		CCAGTTTAGTCCCTATTACCA	0.363													48	204					0	0	0.00361006	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126335	121126335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:121126335C>T	uc003eec.3	+	24	3045	c.2905C>T	c.(2905-2907)CTT>TTT	p.L969F	STXBP5L_uc011bji.1_Missense_Mutation_p.L945F	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	969	WD 12.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TCAGACTTGCCTTTATGTTCA	0.423													8	39					0	0	0.000274275	0	0
POLQ	10721	broad.mit.edu	37	3	121228972	121228972	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:121228972A>G	uc003eee.3	-	11	1859	c.1730T>C	c.(1729-1731)GTT>GCT	p.V577A		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	577					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TCCAAGCTGAACAGACTCTTG	0.433								DNA_polymerases_(catalytic_subunits)					17	121					0	0	0.000566183	0	0
GOLGB1	2804	broad.mit.edu	37	3	121438523	121438523	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:121438523G>A	uc003eei.3	-	7	852	c.726C>T	c.(724-726)ACC>ACT	p.T242T	GOLGB1_uc010hrc.2_Silent_p.T247T|GOLGB1_uc003eej.3_Silent_p.T208T|GOLGB1_uc011bjm.1_Intron|GOLGB1_uc010hrd.1_Intron	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	242	Potential.|Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		CATCTGCCTGGGTTACTAACT	0.433													13	31					0	0	0.00316338	0	0
SLC15A2	6565	broad.mit.edu	37	3	121616315	121616315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:121616315C>T	uc003eep.2	+	3	427	c.274C>T	c.(274-276)CTC>TTC	p.L92F	SLC15A2_uc011bjn.1_Missense_Mutation_p.L92F	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	92	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CTTCAGCAGCCTCTGTTATTT	0.453													16	62					0	0	0.00074312	0	0
CASR	846	broad.mit.edu	37	3	122003307	122003307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:122003307G>A	uc003eev.3	+	7	2878	c.2506G>A	c.(2506-2508)GTA>ATA	p.V836I	CASR_uc003eew.3_Missense_Mutation_p.V846I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	836	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGTCTCTGCCGTAGAGGTGAT	0.498													15	66					0	0	0.00316338	0	0
PDIA5	10954	broad.mit.edu	37	3	122849352	122849352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:122849352C>T	uc003egc.1	+	11	855	c.799C>T	c.(799-801)CCT>TCT	p.P267S	PDIA5_uc003egd.1_Intron	NM_006810	NP_006801	Q14554	PDIA5_HUMAN	protein disulfide isomerase A5 precursor	267					cell redox homeostasis|glycerol ether metabolic process|protein folding|response to stress	endoplasmic reticulum lumen	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0427)		GCCCCAGGTCCCTGAGACTCC	0.592													6	23					0	0	0.00116845	0	0
ADCY5	111	broad.mit.edu	37	3	123014946	123014946	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:123014946G>A	uc003egh.1	-	17	3048	c.3048C>T	c.(3046-3048)TTC>TTT	p.F1016F	ADCY5_uc003egg.1_Silent_p.F674F	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1016	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GTTTCCAGAGGAAGTCGAGGC	0.642													4	16					0	0	0.00116845	0	0
ADCY5	111	broad.mit.edu	37	3	123071317	123071317	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:123071317G>A	uc003egh.1	-	2	1246	c.1246C>T	c.(1246-1248)CAG>TAG	p.Q416*	ADCY5_uc003egg.1_Nonsense_Mutation_p.Q49*|ADCY5_uc003egi.1_5'UTR	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	416	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		AGCCGCGCCTGGATGCACTCT	0.612													6	26					0	0	0.00198382	0	0
MYLK	4638	broad.mit.edu	37	3	123452731	123452731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:123452731C>T	uc003ego.2	-	10	1394	c.1112G>A	c.(1111-1113)AGG>AAG	p.R371K	MYLK_uc011bjw.1_Missense_Mutation_p.R371K|MYLK_uc003egp.2_Missense_Mutation_p.R371K|MYLK_uc003egq.2_Missense_Mutation_p.R371K|MYLK_uc003egr.2_Missense_Mutation_p.R371K|MYLK_uc003egs.2_Missense_Mutation_p.R195K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	371					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TGGCCTCTTCCTCTCTTCTCC	0.612													7	47					0	0	0.00198382	0	0
MYLK	4638	broad.mit.edu	37	3	123512533	123512533	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:123512533G>A	uc003ego.2	-	4	438	c.156C>T	c.(154-156)TTC>TTT	p.F52F	MYLK_uc011bjw.1_Silent_p.F52F|MYLK_uc003egp.2_Silent_p.F52F|MYLK_uc003egq.2_Silent_p.F52F|MYLK_uc003egr.2_Silent_p.F52F|MYLK_uc003egs.2_5'UTR|MYLK_uc010hrs.1_Silent_p.F52F|MYLK_uc003egu.1_Silent_p.F62F	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	52	Ig-like C2-type 1.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CCCGCCCTTCGAACTTGGCGG	0.602													9	18					0	0	0.000442599	0	0
KALRN	8997	broad.mit.edu	37	3	123987809	123987809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:123987809C>T	uc003ehg.2	+	5	797	c.670C>T	c.(670-672)CGG>TGG	p.R224W	KALRN_uc010hrv.1_Missense_Mutation_p.R224W|KALRN_uc003ehf.1_Missense_Mutation_p.R224W|KALRN_uc011bjy.1_Missense_Mutation_p.R224W	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	224	Spectrin 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGAGGGCTCTCGGCGGCTCAT	0.627													5	14					0	0	0.00116845	0	0
KALRN	8997	broad.mit.edu	37	3	124103814	124103814	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:124103814C>T	uc003ehg.2	+	11	2014	c.1887C>T	c.(1885-1887)TTC>TTT	p.F629F	KALRN_uc010hrv.1_Silent_p.F629F|KALRN_uc003ehf.1_Silent_p.F629F|KALRN_uc011bjy.1_Silent_p.F629F|KALRN_uc003ehh.1_5'UTR	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	629	Spectrin 3.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TCCAAGACTTCGTGCGCAGGG	0.572													11	25					0	0	0.000978159	0	0
ITGB5	3693	broad.mit.edu	37	3	124567200	124567200	+	Silent	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:124567200A>T	uc003eho.2	-	4	864	c.567T>A	c.(565-567)CCT>CCA	p.P189P		NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	189	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		TGTAGGAGAAAGGAGAGATGT	0.527													17	83					0	0	0.000958276	0	0
MUC13	56667	broad.mit.edu	37	3	124635246	124635246	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:124635246G>A	uc003ehq.1	-	6	903	c.879C>T	c.(877-879)ACC>ACT	p.T293T		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	293	SEA.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						TGTCACTTGTGGTTTCTGCCA	0.323													20	44					0	0	0.00152264	0	0
HEG1	57493	broad.mit.edu	37	3	124728598	124728598	+	Silent	SNP	G	A	A	rs55953700		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:124728598G>A	uc003ehs.3	-	8	3212	c.3144C>T	c.(3142-3144)ATC>ATT	p.I1048I	HEG1_uc011bke.1_Silent_p.I1148I	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	1048	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GGCATTTGCAGATAAAGGATC	0.428													8	26					0	0	0.000673444	0	0
ZNF148	7707	broad.mit.edu	37	3	124951262	124951262	+	Missense_Mutation	SNP	G	A	A	rs137930153		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:124951262G>A	uc003ehx.3	-	9	2794	c.2308C>T	c.(2308-2310)CCC>TCC	p.P770S	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.P770S|ZNF148_uc010hsa.2_Missense_Mutation_p.P770S|ZNF148_uc003eia.3_Missense_Mutation_p.P770S|ZNF148_uc003ehy.2_Missense_Mutation_p.P107S	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	770					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding	p.P770S(1)		skin(2)|ovary(1)|pancreas(1)	4						TTCACCAAGGGAAATTCTGAA	0.408													8	24					0	0	0.000442599	0	0
ABTB1	80325	broad.mit.edu	37	3	127396377	127396377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:127396377G>A	uc003ejt.2	+	9	920	c.832G>A	c.(832-834)GTG>ATG	p.V278M	ABTB1_uc003ejr.2_Missense_Mutation_p.V136M|ABTB1_uc003ejs.2_Missense_Mutation_p.V253M|ABTB1_uc003eju.2_Missense_Mutation_p.V136M|ABTB1_uc010hsm.2_Intron	NM_172027	NP_742024	Q969K4	ABTB1_HUMAN	ankyrin repeat and BTB (POZ) domain containing 1	278	BTB 2.					cytoplasm|nucleolus|plasma membrane	translation elongation factor activity				0						CTGCTTCCGAGTGGCTGGCTG	0.632													12	47					0	0	0.00316338	0	0
EEFSEC	60678	broad.mit.edu	37	3	127983499	127983499	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:127983499T>G	uc003eki.2	+	4	699	c.661T>G	c.(661-663)TCG>GCG	p.S221A	EEFSEC_uc003ekj.2_Intron	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	221						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						GAGAGATCCCTCGGGACCGTT	0.567													18	72					0	0	0.00395357	0	0
GATA2	2624	broad.mit.edu	37	3	128204928	128204928	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:128204928G>A	uc003ekm.3	-	4	948	c.513C>T	c.(511-513)TTC>TTT	p.F171F	GATA2_uc003ekn.3_Silent_p.F171F|GATA2_uc003eko.2_Silent_p.F171F	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	171					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		GTGGGAAGCCGAAAAGGTGGG	0.677			Mis		AML(CML blast transformation)								11	8					0	0	0.00244969	0	0
COL6A6	131873	broad.mit.edu	37	3	130287196	130287196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:130287196G>A	uc010htl.2	+	5	2180	c.2149G>A	c.(2149-2151)GGC>AGC	p.G717S		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	717	Nonhelical region.|VWFA 4.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CCCCACCAAGGGCGCCCGGCC	0.507													29	33					0	0	0.0024448	0	0
ATP2C1	27032	broad.mit.edu	37	3	130659530	130659530	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:130659530C>T	uc003enl.2	+	7	639	c.417C>T	c.(415-417)TGC>TGT	p.C139C	ATP2C1_uc011blg.1_Silent_p.C173C|ATP2C1_uc011blh.1_Silent_p.C134C|ATP2C1_uc011bli.1_Silent_p.C173C|ATP2C1_uc003enk.2_Silent_p.C123C|ATP2C1_uc003enm.2_Silent_p.C139C|ATP2C1_uc003enn.2_Silent_p.C123C|ATP2C1_uc003eno.2_Silent_p.C139C|ATP2C1_uc003enp.2_Silent_p.C139C|ATP2C1_uc003enq.2_Silent_p.C139C|ATP2C1_uc003enr.2_Silent_p.C139C|ATP2C1_uc003ens.2_Silent_p.C139C|ATP2C1_uc003ent.2_Silent_p.C139C	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	139	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	CACCAGAATGCCATTGGTATG	0.338									Hailey-Hailey_disease				8	57					0	0	0.000978159	0	0
NEK11	79858	broad.mit.edu	37	3	130871529	130871529	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:130871529C>T	uc003eny.2	+	9	1178	c.852C>T	c.(850-852)ATC>ATT	p.I284I	NEK11_uc003enx.2_Silent_p.I284I|NEK11_uc003eoa.2_Silent_p.I284I|NEK11_uc003enz.2_Silent_p.I102I|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_Silent_p.I136I|NEK11_uc011bll.1_Intron|NEK11_uc011blm.1_Silent_p.I284I	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	284	Protein kinase.				cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						TTTTAAAAATCCCTTACCTTG	0.323													11	24					0	0	0.000978159	0	0
CPNE4	131034	broad.mit.edu	37	3	131388553	131388553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:131388553G>A	uc003eok.2	-	7	1082	c.647C>T	c.(646-648)TCT>TTT	p.S216F	CPNE4_uc011blq.1_Missense_Mutation_p.S234F|CPNE4_uc003eol.2_Missense_Mutation_p.S234F|CPNE4_uc003eom.2_Missense_Mutation_p.S216F	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	216	C2 2.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GCTGCATAGAGAATTTACAGA	0.403													15	71					0	0	0.00074312	0	0
CPNE4	131034	broad.mit.edu	37	3	131442365	131442365	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:131442365G>A	uc003eok.2	-	3	720	c.285C>T	c.(283-285)GTC>GTT	p.V95V	CPNE4_uc011blq.1_Silent_p.V113V|CPNE4_uc003eol.2_Silent_p.V113V|CPNE4_uc003eom.2_Silent_p.V95V	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	95	C2 1.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TGATGTCATGGACTTCAAACC	0.527													33	104					0	0	0.000953801	0	0
TMEM108	66000	broad.mit.edu	37	3	133098601	133098601	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:133098601C>T	uc003eph.2	+	4	320	c.46C>T	c.(46-48)CTG>TTG	p.L16L	TMEM108_uc003epi.2_Silent_p.L16L|TMEM108_uc003epj.1_Silent_p.L16L|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_5'UTR	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	16						integral to membrane				ovary(2)|skin(2)	4						TCAAGGTTTCCTGCTGATCTT	0.547													35	164					0	0	0.00195071	0	0
TF	7018	broad.mit.edu	37	3	133489369	133489369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:133489369G>A	uc003epu.1	+	19	3368	c.1640G>A	c.(1639-1641)GGA>GAA	p.G547E	TF_uc011blt.1_Missense_Mutation_p.G420E|TF_uc003epw.1_Intron|TF_uc003epv.1_Missense_Mutation_p.G547E	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	547	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	GTTGAGAAGGGAGATGTGGCC	0.512													24	81					0	0	0.00127121	0	0
C3orf36	80111	broad.mit.edu	37	3	133647515	133647515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:133647515C>T	uc003epz.1	-	1	1142	c.133G>A	c.(133-135)GCC>ACC	p.A45T		NM_025041	NP_079317	Q3SXR2	CC036_HUMAN	hypothetical protein LOC80111	45										ovary(1)	1						GGCTCTAAGGCCATTCCTCCA	0.632													5	20					0	0	0.00198382	0	0
EPHB1	2047	broad.mit.edu	37	3	134670754	134670754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:134670754G>A	uc003eqt.2	+	3	885	c.665G>A	c.(664-666)CGG>CAG	p.R222Q	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Intron	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	222	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GTGATTGCTCGGGGCACATGC	0.532													19	53					0	0	0.00229938	0	0
EPHB1	2047	broad.mit.edu	37	3	134920471	134920471	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:134920471C>A	uc003eqt.2	+	12	2506	c.2286C>A	c.(2284-2286)GAC>GAA	p.D762E	EPHB1_uc003equ.2_Missense_Mutation_p.D323E	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	762	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						AGGTGTCCGACTTTGGCCTCT	0.532													5	25					0.000602214	0.00167649	0.000602214	1	0
PPP2R3A	5523	broad.mit.edu	37	3	135721467	135721467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:135721467C>T	uc003eqv.1	+	2	1692	c.1127C>T	c.(1126-1128)TCC>TTC	p.S376F	PPP2R3A_uc011blz.1_Intron	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	376					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						TCCACAAATTCCTTATATAAC	0.363													14	18					0	0	0.00316338	0	0
ESYT3	83850	broad.mit.edu	37	3	138193065	138193065	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:138193065A>G	uc003esk.2	+	20	2565	c.2339A>G	c.(2338-2340)AAC>AGC	p.N780S		NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	780	C2 3.					integral to membrane|plasma membrane					0						CAAATCAGAAACCTAACACCA	0.433													37	151					0	0	0.00375469	0	0
PIK3CB	5291	broad.mit.edu	37	3	138474786	138474786	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:138474786G>A	uc011bmq.1	-	2	207	c.207C>T	c.(205-207)TTC>TTT	p.F69F		NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	69	PI3K-ABD.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TAAGGAGGTTGAACATTGGGT	0.308													90	300					0	0	0.00361006	0	0
TRIM42	287015	broad.mit.edu	37	3	140406593	140406593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:140406593G>A	uc003eto.1	+	3	1260	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	357						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						TGACCTAATGGAATTCAACAT	0.373													9	33					0	0	0.000442599	0	0
XRN1	54464	broad.mit.edu	37	3	142089449	142089449	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:142089449G>A	uc003eus.2	-	27	3149	c.3082C>T	c.(3082-3084)CAA>TAA	p.Q1028*	XRN1_uc010huu.2_Nonsense_Mutation_p.Q494*|XRN1_uc003eut.2_Nonsense_Mutation_p.Q1028*|XRN1_uc003euu.2_Nonsense_Mutation_p.Q1028*	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1028					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						ATAATTTCTTGAACTTTTTCA	0.269													16	50					0	0	0.000566183	0	0
PLSCR2	57047	broad.mit.edu	37	3	146173114	146173114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:146173114C>T	uc003evv.1	-	5	566	c.233G>A	c.(232-234)AGG>AAG	p.R78K	PLSCR2_uc003evw.1_Missense_Mutation_p.R147K	NM_020359	NP_065092	Q9NRY7	PLS2_HUMAN	phospholipid scramblase 2	78	Cytoplasmic (By similarity).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity				0						ATCAGTAATCCTCAAGGTAAA	0.433													13	85					0	0	0.000422831	0	0
CPB1	1360	broad.mit.edu	37	3	148558567	148558567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:148558567G>A	uc003ewl.2	+	4	390	c.367G>A	c.(367-369)GAA>AAA	p.E123K		NM_001871	NP_001862	P15086	CBPB1_HUMAN	pancreatic carboxypeptidase B1 preproprotein	123					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			CAACAAGTGGGAAACGGTATG	0.423													23	47					0	0	0.00127121	0	0
HPS3	84343	broad.mit.edu	37	3	148858068	148858068	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:148858068C>T	uc003ewu.1	+	2	635	c.495C>T	c.(493-495)ATC>ATT	p.I165I	HPS3_uc003ewt.1_Silent_p.I165I|HPS3_uc011bnq.1_Intron	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	165						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			AGTACCAGATCATTAATGAGG	0.378									Hermansky-Pudlak_syndrome				23	87					0	0	0.00395357	0	0
P2RY14	9934	broad.mit.edu	37	3	150931448	150931448	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:150931448C>T	uc003eyr.1	-	3	1135	c.657G>A	c.(655-657)AAG>AAA	p.K219K	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Silent_p.K219K	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	219	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCCGACTTGACTTAAGGTGGG	0.373													7	45					0	0	0.00307968	0	0
GPR87	53836	broad.mit.edu	37	3	151012560	151012560	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:151012560C>T	uc003eyt.2	-	3	835	c.474G>A	c.(472-474)ACG>ACA	p.T158T	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_023915	NP_076404	Q9BY21	GPR87_HUMAN	G protein-coupled receptor 87	158	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATAAAACCTTCGTGAAGGTTA	0.438													12	53					0	0	0.00136819	0	0
MED12L	116931	broad.mit.edu	37	3	151094807	151094807	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:151094807A>G	uc003eyp.2	+	28	4090	c.4052A>G	c.(4051-4053)AAC>AGC	p.N1351S	MED12L_uc011bnz.1_Missense_Mutation_p.N1211S|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.N514S	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1351					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GAAATGAACAACTTACTGGAC	0.398													6	25					0	0	0.00198382	0	0
IGSF10	285313	broad.mit.edu	37	3	151161411	151161411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:151161411G>A	uc011bod.1	-	5	5324	c.5324C>T	c.(5323-5325)CCT>CTT	p.P1775L	IGSF10_uc011bob.1_5'Flank|IGSF10_uc011boc.1_5'Flank	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1775	Ig-like C2-type 4.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GGTAACTGTAGGGCTTGGCCT	0.517													7	38					0	0	0.000274275	0	0
IGSF10	285313	broad.mit.edu	37	3	151164105	151164105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:151164105G>A	uc011bod.1	-	4	3664	c.3664C>T	c.(3664-3666)CAA>TAA	p.Q1222*		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1222					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ACTTTATGTTGATTCCTTAAT	0.378													22	99					0	0	0.00278032	0	0
SUCNR1	56670	broad.mit.edu	37	3	151599096	151599096	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:151599096G>A	uc003ezf.1	+	3	864	c.765G>A	c.(763-765)AGG>AGA	p.R255R		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	255	Extracellular (Potential).			R->A: No effect on receptor function.		integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	GGAATGTGAGGATCGCTTCAC	0.498													10	56					0	0	0.000978159	0	0
PLCH1	23007	broad.mit.edu	37	3	155198941	155198941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:155198941G>A	uc011bok.1	-	23	5175	c.4898C>T	c.(4897-4899)TCC>TTC	p.S1633F	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.S1595F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1633					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TGCGATGTAGGAGCCGGTGGA	0.582													14	12					0	0	0.00316338	0	0
PLCH1	23007	broad.mit.edu	37	3	155232633	155232633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:155232633C>T	uc011bok.1	-	11	1752	c.1475G>A	c.(1474-1476)AGG>AAG	p.R492K	PLCH1_uc011boj.1_Missense_Mutation_p.R492K|PLCH1_uc011bol.1_Missense_Mutation_p.R474K	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	492					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CAGTTTTTTCCTTATGAAAGA	0.393													6	30					0	0	0.00198382	0	0
B3GALNT1	8706	broad.mit.edu	37	3	160804296	160804296	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:160804296G>A	uc003fdv.2	-	5	666	c.247C>T	c.(247-249)CTG>TTG	p.L83L	B3GALNT1_uc003fdw.2_Silent_p.L83L|B3GALNT1_uc003fdx.2_Silent_p.L83L|B3GALNT1_uc003fdy.2_Silent_p.L83L|B3GALNT1_uc003fdz.2_Silent_p.L83L|B3GALNT1_uc003fea.2_Silent_p.L83L|B3GALNT1_uc011bpa.1_Intron	NM_033169	NP_149359	O75752	B3GL1_HUMAN	UDP-Gal:betaGlcNAc beta	83	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;4.41e-05)|Lung(72;4.61e-05)			GAGGTCACCAGAATGACCAGA	0.428													21	52					0	0	0.000720815	0	0
OTOL1	131149	broad.mit.edu	37	3	161221434	161221434	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:161221434T>C	uc011bpb.1	+	4	1138	c.1138T>C	c.(1138-1140)TTT>CTT	p.F380L		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	380	C1q.					collagen					0						CACTGGGAAGTTTAACTGCTC	0.448													3	7					0	0	0.000602214	0	0
MECOM	2122	broad.mit.edu	37	3	168807896	168807896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:168807896C>T	uc003ffi.3	-	14	2998	c.2729G>A	c.(2728-2730)GGA>GAA	p.G910E	MECOM_uc010hwk.1_Missense_Mutation_p.G924E|MECOM_uc003ffj.3_Missense_Mutation_p.G975E|MECOM_uc011bpi.1_Missense_Mutation_p.G902E|MECOM_uc003ffn.3_Missense_Mutation_p.G910E|MECOM_uc003ffk.2_Missense_Mutation_p.G901E|MECOM_uc003ffl.2_Missense_Mutation_p.G1061E|MECOM_uc011bpj.1_Missense_Mutation_p.G1098E|MECOM_uc011bpk.1_Missense_Mutation_p.G900E	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	910	Asp/Glu-rich (acidic).				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TCCTGTTTTTCCAGTAATATC	0.418													29	46					0	0	0.00283554	0	0
MYNN	55892	broad.mit.edu	37	3	169492152	169492152	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:169492152C>T	uc003fft.2	+	2	498	c.69C>T	c.(67-69)CTC>CTT	p.L23L	MYNN_uc011bpm.1_5'UTR|MYNN_uc003ffu.2_Silent_p.L23L|MYNN_uc003ffv.2_5'UTR|MYNN_uc010hwo.2_Silent_p.L23L	NM_018657	NP_061127	Q9NPC7	MYNN_HUMAN	myoneurin	23						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1	all_cancers(22;9.55e-22)|all_epithelial(15;2.04e-26)|all_lung(20;5.05e-16)|Lung NSC(18;2.19e-15)|Ovarian(172;0.000223)|Breast(254;0.197)		Epithelial(2;4.03e-64)|all cancers(2;2.19e-58)|Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			CAGGTTTTCTCTGTGACTGTA	0.428													31	80					0	0	0.00178596	0	0
SLC2A2	6514	broad.mit.edu	37	3	170723244	170723244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:170723244C>T	uc003fhe.1	-	7	1102	c.793G>A	c.(793-795)GGA>AGA	p.G265R	SLC2A2_uc003fhf.1_Missense_Mutation_p.G92R|SLC2A2_uc011bpu.1_Missense_Mutation_p.G138R	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	265	Cytoplasmic (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			TCATCATATCCTCTGAGTCTT	0.338													4	26					0	0	0.00116845	0	0
TNIK	23043	broad.mit.edu	37	3	170805195	170805195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:170805195C>T	uc003fhh.2	-	24	3167	c.2822G>A	c.(2821-2823)GGA>GAA	p.G941E	TNIK_uc003fhi.2_Missense_Mutation_p.G886E|TNIK_uc003fhj.2_Missense_Mutation_p.G912E|TNIK_uc003fhk.2_Missense_Mutation_p.G933E|TNIK_uc003fhl.2_Missense_Mutation_p.G857E|TNIK_uc003fhm.2_Missense_Mutation_p.G878E|TNIK_uc003fhn.2_Missense_Mutation_p.G904E|TNIK_uc003fho.2_Missense_Mutation_p.G849E|TNIK_uc003fhg.2_Missense_Mutation_p.G119E	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	941	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			AGTCGGGGTTCCAGCTGGAGA	0.582													9	37					0	0	0.000673444	0	0
TNIK	23043	broad.mit.edu	37	3	170858235	170858235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:170858235C>T	uc003fhh.2	-	13	1630	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K	TNIK_uc003fhi.2_Missense_Mutation_p.E429K|TNIK_uc003fhj.2_Missense_Mutation_p.E429K|TNIK_uc003fhk.2_Missense_Mutation_p.E429K|TNIK_uc003fhl.2_Missense_Mutation_p.E429K|TNIK_uc003fhm.2_Missense_Mutation_p.E429K|TNIK_uc003fhn.2_Missense_Mutation_p.E429K|TNIK_uc003fho.2_Missense_Mutation_p.E429K	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	429	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CGCATCTGCTCCTCATAGTGC	0.642													15	70					0	0	0.00152264	0	0
PLD1	5337	broad.mit.edu	37	3	171417576	171417577	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:171417576_171417577CC>AA	uc003fhs.2	-	12	1301_1302	c.1185_1186GG>TT	c.(1183-1188)GAGGGA>GATTGA	p.395_396EG>D*	PLD1_uc003fht.2_Nonsense_Mutation_p.395_396EG>D*	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	395_396					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	CAACGATTTCCCTCAACCACTG	0.361													12	281					0	0	6.4e-05	0	0
ECT2	1894	broad.mit.edu	37	3	172474833	172474834	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:172474833_172474834CC>TT	uc003fii.2	+	4	409_410	c.271_272CC>TT	c.(271-273)CCG>TTG	p.P91L	ECT2_uc010hwv.1_Missense_Mutation_p.P122L|ECT2_uc003fih.2_Missense_Mutation_p.P90L|ECT2_uc003fij.1_Missense_Mutation_p.P91L|ECT2_uc003fik.1_Missense_Mutation_p.P91L|ECT2_uc003fil.1_Missense_Mutation_p.P122L	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	91					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			TTTGGATTCTCCGGAATTTGAA	0.342													43	148					0	0	6.4e-05	0	0
SPATA16	83893	broad.mit.edu	37	3	172835519	172835519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:172835519C>T	uc003fin.3	-	2	161	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	1					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TTCCTGCATCCATCGATCCTG	0.393													22	22					0	0	0.00278032	0	0
NAALADL2	254827	broad.mit.edu	37	3	175293879	175293879	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:175293879C>T	uc003fit.2	+	10	1791	c.1704C>T	c.(1702-1704)ATC>ATT	p.I568I	NAALADL2_uc003fiu.1_Silent_p.I561I|NAALADL2_uc010hwy.1_Silent_p.I342I	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	568	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		AAACCAATATCAGTTCTATAC	0.373													15	75					0	0	0.00316338	0	0
PEX5L	51555	broad.mit.edu	37	3	179689432	179689432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:179689432C>T	uc003fki.1	-	2	173	c.43G>A	c.(43-45)GGA>AGA	p.G15R	PEX5L_uc011bqd.1_5'UTR|PEX5L_uc011bqe.1_5'UTR|PEX5L_uc011bqf.1_5'UTR|PEX5L_uc003fkj.1_Missense_Mutation_p.G15R|PEX5L_uc010hxd.1_Intron|PEX5L_uc011bqg.1_Intron|PEX5L_uc011bqh.1_Intron	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	15					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			cttagttttccatatccttgt	0.055													6	26					0	0	0.00198382	0	0
TTC14	151613	broad.mit.edu	37	3	180326496	180326496	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:180326496T>C	uc003fkk.2	+	11	1430	c.1298T>C	c.(1297-1299)TTG>TCG	p.L433S	TTC14_uc003fkl.2_3'UTR|TTC14_uc003fkm.2_Missense_Mutation_p.L433S	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	433							RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			AAGAAATCTTTGGAATTAAGA	0.338													3	10					0	0	6.4e-05	0	0
KLHL6	89857	broad.mit.edu	37	3	183217466	183217466	+	Silent	SNP	G	A	A	rs3732586	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:183217466G>A	uc003flr.2	-	4	1117	c.1059C>T	c.(1057-1059)CTC>CTT	p.L353L	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Intron	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	353	Kelch 1.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			CTGTTAGCGGGAGCTTGGCCA	0.547													16	43					0	0	0.000958276	0	0
YEATS2	55689	broad.mit.edu	37	3	183442213	183442213	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:183442213T>C	uc003fly.2	+	6	739	c.544T>C	c.(544-546)TCT>CCT	p.S182P		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	182					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TCAGGATACTTCTAGAATTAC	0.333													6	25					0	0	0.00198382	0	0
HTR3C	170572	broad.mit.edu	37	3	183777335	183777335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:183777335C>T	uc003fmk.2	+	7	866	c.832C>T	c.(832-834)CGT>TGT	p.R278C		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	278	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GAGCGAGAATCGTGCCCCATT	0.547													18	59					0	0	0.00152264	0	0
HTR3C	170572	broad.mit.edu	37	3	183778126	183778126	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:183778126C>G	uc003fmk.2	+	9	1364	c.1330C>G	c.(1330-1332)CTC>GTC	p.L444V		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	444	Helical; Name=4; (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			TGTCATTGTCCTCTGGAACAC	0.552													15	54					0	0	0.00244969	0	0
THPO	7066	broad.mit.edu	37	3	184090440	184090440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:184090440G>A	uc003fol.1	-	6	1138	c.923C>T	c.(922-924)CCT>CTT	p.P308L	THPO_uc003fom.1_Missense_Mutation_p.P304L|THPO_uc003fon.2_Silent_p.P269P|THPO_uc011bro.1_Intron|THPO_uc003fop.2_Silent_p.P265P|THPO_uc011brp.1_Intron|THPO_uc011brq.1_Silent_p.P229P	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	308	Pro-rich.				cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGGTGGAAGAGGGAAGAGCGT	0.592													13	49					0	0	0.00244969	0	0
EHHADH	1962	broad.mit.edu	37	3	184953239	184953239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:184953239G>A	uc003fpf.2	-	3	217	c.190C>T	c.(190-192)CGT>TGT	p.R64C	EHHADH_uc011brs.1_5'UTR	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	64	Enoyl-CoA hydratase / isomerase.					peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	CTGAAGCCACGAATATCAGCA	0.418													8	19					0	0	0.000673444	0	0
LIPH	200879	broad.mit.edu	37	3	185241875	185241876	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:185241875_185241876GG>TT	uc003fpm.2	-	5	811_812	c.701_702CC>AA	c.(700-702)CCC>CAA	p.P234Q	LIPH_uc010hyh.2_Missense_Mutation_p.P200Q	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	234					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			ATATTGTTTTGGGGCAGCCAGG	0.317													11	317					0	0	6.4e-05	0	0
SENP2	59343	broad.mit.edu	37	3	185341841	185341841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:185341841G>A	uc003fpn.2	+	15	1753	c.1582G>A	c.(1582-1584)GAG>AAG	p.E528K	SENP2_uc011brv.1_Missense_Mutation_p.E518K|SENP2_uc011brw.1_Missense_Mutation_p.E341K	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	528	Protease.				mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GAATCTTTTAGAGTGGACCCA	0.348													88	353					0	0	0.00361006	0	0
AHSG	197	broad.mit.edu	37	3	186338548	186338548	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:186338548G>A	uc003fqk.3	+	7	1014	c.933G>A	c.(931-933)CGG>CGA	p.R311R	AHSG_uc003fql.3_Silent_p.R312R|AHSG_uc003fqm.3_Silent_p.R310R|AHSG_uc010hyp.2_Silent_p.R274R	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	311					acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		AGTTGCACCGGGCGCACTACG	0.637													10	41					0	0	0.00185496	0	0
BCL6	604	broad.mit.edu	37	3	187442854	187442854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:187442854G>A	uc003frp.3	-	9	2309	c.1852C>T	c.(1852-1854)CGT>TGT	p.R618C	BCL6_uc011bsf.1_Missense_Mutation_p.R562C|BCL6_uc010hza.2_Missense_Mutation_p.R516C|BCL6_uc003frq.1_Missense_Mutation_p.R618C	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	618	C2H2-type 4.				negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		ACATGGGCACGGAGGTGGGCC	0.587			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								5	30					0	0	0.00116845	0	0
TP63	8626	broad.mit.edu	37	3	189586498	189586498	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:189586498G>A	uc003fry.2	+	8	1211	c.1122G>A	c.(1120-1122)ACG>ACA	p.T374T	TP63_uc003frx.2_Silent_p.T374T|TP63_uc003frz.2_Silent_p.T374T|TP63_uc010hzc.1_Silent_p.T374T|TP63_uc003fsa.2_Silent_p.T280T|TP63_uc003fsb.2_Silent_p.T280T|TP63_uc003fsc.2_Silent_p.T280T|TP63_uc003fsd.2_Silent_p.T280T|TP63_uc010hzd.1_Silent_p.T195T|TP63_uc003fse.1_Intron	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	374	Interaction with HIPK2.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GTGATGGTACGAAGCGCCGTA	0.498									Hay-Wells_syndrome	HNSCC(45;0.13)			9	47					0	0	0.000978159	0	0
TP63	8626	broad.mit.edu	37	3	189607225	189607226	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:189607225_189607226CC>TA	uc003fry.2	+	12	1693_1694	c.1604_1605CC>TA	c.(1603-1605)TCC>TTA	p.S535L	TP63_uc003frz.2_Missense_Mutation_p.S535L|TP63_uc010hzc.1_Intron|TP63_uc003fsc.2_Missense_Mutation_p.S441L|TP63_uc003fsd.2_Missense_Mutation_p.S441L|TP63_uc010hzd.1_Missense_Mutation_p.S356L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	535					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CCATCCACCTCCCACTGCACAC	0.614									Hay-Wells_syndrome	HNSCC(45;0.13)			6	24					0	0	6.4e-05	0	0
IL1RAP	3556	broad.mit.edu	37	3	190322153	190322153	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:190322153T>G	uc003fsm.1	+	4	507	c.301T>G	c.(301-303)TTC>GTC	p.F101V	IL1RAP_uc003fsk.2_Missense_Mutation_p.F101V|IL1RAP_uc003fsl.2_Missense_Mutation_p.F101V|IL1RAP_uc010hzf.2_Intron|IL1RAP_uc010hzg.1_Missense_Mutation_p.F101V|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Missense_Mutation_p.F101V|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Missense_Mutation_p.F101V	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	101	Ig-like C2-type 1.|Extracellular (Potential).				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		TGTGCTGTGGTTCCGGCCCAC	0.507													3	19					0	0	0.00024832	0	0
CCDC50	152137	broad.mit.edu	37	3	191075887	191075887	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:191075887C>T	uc003fsw.2	+	3	803	c.213C>T	c.(211-213)GCC>GCT	p.A71A	CCDC50_uc003fsv.2_Silent_p.A71A	NM_174908	NP_777568	Q8IVM0	CCD50_HUMAN	Ymer protein short isoform	71	Potential.					cytoplasm	protein binding				0	all_cancers(143;8.88e-09)|Ovarian(172;0.103)|Breast(254;0.221)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000136)		AAGCGCAGGCCCAGCTCCAGA	0.552													8	41					0	0	0.000274275	0	0
FGF12	2257	broad.mit.edu	37	3	192078232	192078232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:192078232C>T	uc003fsx.2	-	2	1121	c.295G>A	c.(295-297)GAA>AAA	p.E99K	FGF12_uc003fsy.2_Missense_Mutation_p.E37K	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	99					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		TCGCTGTTTTCGTCCTTGGTC	0.443													6	43					0	0	0.00116845	0	0
ATP13A5	344905	broad.mit.edu	37	3	193007815	193007815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:193007815G>A	uc011bsq.1	-	26	2882	c.2882C>T	c.(2881-2883)CCA>CTA	p.P961L		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	961					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TGGTCTATATGGAGCCAGCTT	0.383													4	15					0	0	0.000602214	0	0
ATP13A4	84239	broad.mit.edu	37	3	193185217	193185217	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:193185217C>T	uc003ftd.2	-	10	1110	c.1002G>A	c.(1000-1002)TGG>TGA	p.W334*	ATP13A4_uc003fte.1_Nonsense_Mutation_p.W334*|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Nonsense_Mutation_p.W40*	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	334	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TCTGTGTTTTCCAGGGCACAG	0.507													10	50					0	0	0.000442599	0	0
ATP13A4	84239	broad.mit.edu	37	3	193201782	193201782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:193201782G>A	uc003ftd.2	-	8	859	c.751C>T	c.(751-753)CTC>TTC	p.L251F	ATP13A4_uc003fte.1_Missense_Mutation_p.L251F|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	251	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		AGATGGTGGAGTTTTACAGAT	0.343													29	127					0	0	0.0024448	0	0
MUC4	4585	broad.mit.edu	37	3	195475828	195475828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:195475828C>T	uc011bto.1	-	25	16055	c.15595G>A	c.(15595-15597)GGC>AGC	p.G5199S	MUC4_uc010hzq.2_Missense_Mutation_p.G184S|MUC4_uc003fuz.2_Missense_Mutation_p.G925S|MUC4_uc003fva.2_Missense_Mutation_p.G807S|MUC4_uc003fvb.2_Missense_Mutation_p.G843S|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.G843S|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Missense_Mutation_p.G807S|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.G891S|MUC4_uc011bti.1_Missense_Mutation_p.G891S|MUC4_uc011btj.1_Missense_Mutation_p.G1068S|MUC4_uc011btk.1_Missense_Mutation_p.G807S|MUC4_uc011btl.1_Missense_Mutation_p.G836S|MUC4_uc011btm.1_Missense_Mutation_p.G1016S|MUC4_uc011btn.1_Missense_Mutation_p.G807S|MUC4_uc003fvo.2_Missense_Mutation_p.G1091S|MUC4_uc003fvp.2_Missense_Mutation_p.G1040S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	2084	EGF-like 2.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TCACAGTAGCCCCTACTGCAC	0.642													5	30					0	0	0.000602214	0	0
MUC4	4585	broad.mit.edu	37	3	195479950	195479950	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:195479950C>T	uc011bto.1	-	21	15556	c.15096G>A	c.(15094-15096)GGG>GGA	p.G5032G	MUC4_uc010hzq.2_Silent_p.G17G|MUC4_uc003fuz.2_Silent_p.G758G|MUC4_uc003fva.2_Silent_p.G640G|MUC4_uc003fvb.2_Silent_p.G676G|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Silent_p.G676G|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Silent_p.G640G|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Silent_p.G724G|MUC4_uc011bti.1_Silent_p.G724G|MUC4_uc011btj.1_Silent_p.G901G|MUC4_uc011btk.1_Silent_p.G640G|MUC4_uc011btl.1_Silent_p.G669G|MUC4_uc011btm.1_Silent_p.G849G|MUC4_uc011btn.1_Silent_p.G640G|MUC4_uc003fvo.2_Silent_p.G924G|MUC4_uc003fvp.2_Silent_p.G873G	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1917					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGAAGTTGTTCCCAGCCAGGA	0.637													12	32					0	0	0.00185496	0	0
MUC4	4585	broad.mit.edu	37	3	195517925	195517925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:195517925C>T	uc011bto.1	-	2	986	c.526G>A	c.(526-528)GAA>AAA	p.E176K	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.E58K	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	181					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GATTGTCCTTCCTGTCCAGCT	0.507													13	64					0	0	0.00185496	0	0
MUC4	4585	broad.mit.edu	37	3	195518081	195518081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:195518081G>A	uc011bto.1	-	2	830	c.370C>T	c.(370-372)CCC>TCC	p.P124S	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.P6S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	129					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		ACACTGGAGGGAAATGATGTG	0.453													6	52					0	0	0.000274275	0	0
PCYT1A	5130	broad.mit.edu	37	3	195975147	195975147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:195975147G>A	uc003fwg.2	-	5	438	c.265C>T	c.(265-267)CAC>TAC	p.H89Y	PCYT1A_uc003fwh.2_Missense_Mutation_p.H89Y	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	89	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	TGACCAGAGTGAAATAAGTCA	0.393													26	74					0	0	0.00127121	0	0
SLC26A1	10861	broad.mit.edu	37	4	985058	985058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:985058C>T	uc003gcb.2	-	3	812	c.434G>A	c.(433-435)GGC>GAC	p.G145D	SLC26A1_uc003gbx.2_Missense_Mutation_p.G145D|IDUA_uc003gby.2_Intron|IDUA_uc003gbz.2_Intron|IDUA_uc003gca.2_Intron|SLC26A1_uc003gcc.2_Missense_Mutation_p.G145D	NM_213613	NP_998778	Q9H2B4	S26A1_HUMAN	solute carrier family 26, member 1 isoform a	145						integral to membrane|plasma membrane	secondary active sulfate transmembrane transporter activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GGGGTCAAAGCCGGCCAGCTG	0.662													5	14					0	0	0.000602214	0	0
IDUA	3425	broad.mit.edu	37	4	998168	998168	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:998168C>G	uc003gby.2	+	14	2037	c.1949C>G	c.(1948-1950)CCG>CGG	p.P650R	IDUA_uc003gbz.2_RNA|IDUA_uc003gca.2_Missense_Mutation_p.P672R	NM_000203	NP_000194	P35475	IDUA_HUMAN	alpha-L-iduronidase precursor	650					disaccharide metabolic process	lysosome	cation binding|L-iduronidase activity				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)		Laronidase(DB00090)	CCCCCATCCCCGGGCAATCCA	0.677													3	14					0	0	6.4e-05	0	0
FAM193A	8603	broad.mit.edu	37	4	2695381	2695381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:2695381C>T	uc010icl.2	+	14	2350	c.1999C>T	c.(1999-2001)CCC>TCC	p.P667S	FAM193A_uc010ick.2_Missense_Mutation_p.P867S|FAM193A_uc003gfd.2_Missense_Mutation_p.P667S|FAM193A_uc011bvm.1_Missense_Mutation_p.P689S|FAM193A_uc011bvn.1_Missense_Mutation_p.P667S|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.P521S	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	667										ovary(3)	3						GAGGAATAGCCCCACGGGCTT	0.637													21	61					0	0	0.00278032	0	0
ADD1	118	broad.mit.edu	37	4	2886287	2886287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:2886287C>T	uc003gfr.2	+	4	592	c.404C>T	c.(403-405)TCT>TTT	p.S135F	ADD1_uc003gfn.2_Intron|ADD1_uc010ico.1_Missense_Mutation_p.S135F|ADD1_uc003gfo.2_Missense_Mutation_p.S135F|ADD1_uc003gfp.2_Missense_Mutation_p.S135F|ADD1_uc003gfq.2_Missense_Mutation_p.S135F|ADD1_uc003gfs.2_Missense_Mutation_p.S135F|ADD1_uc003gft.3_Missense_Mutation_p.S135F|ADD1_uc003gfu.2_5'Flank	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	135					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GGATCTGATTCTATTGCGTAT	0.328													32	126					0	0	0.00128727	0	0
GRK4	2868	broad.mit.edu	37	4	3015492	3015492	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:3015492G>A	uc003ggn.1	+	8	1133	c.678G>A	c.(676-678)AGG>AGA	p.R226R	GRK4_uc003ggo.1_Silent_p.R226R|GRK4_uc003ggp.1_Silent_p.R194R|GRK4_uc003ggq.1_Silent_p.R194R	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	226	Protein kinase.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TAAAGAAGAGGAAAGGTGAAG	0.378													30	88					0	0	0.00209593	0	0
HTT	3064	broad.mit.edu	37	4	3134593	3134593	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:3134593G>A	uc011bvq.1	+	19	2599	c.2454G>A	c.(2452-2454)AAG>AAA	p.K818K		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	816	HEAT 4.				establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AAACACTGAAGGATGAGTCTT	0.388													26	104					0	0	0.00127121	0	0
HTT	3064	broad.mit.edu	37	4	3136170	3136170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:3136170G>A	uc011bvq.1	+	20	2687	c.2542G>A	c.(2542-2544)GGA>AGA	p.G848R		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	846					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CAGTGAGTTAGGACTGCAGCT	0.517													24	83					0	0	0.00395357	0	0
HTT	3064	broad.mit.edu	37	4	3240191	3240191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:3240191C>T	uc011bvq.1	+	66	9060	c.8915C>T	c.(8914-8916)CCT>CTT	p.P2972L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2970					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AAAGGCTTTCCTTGTGAAGCC	0.587													7	13					0	0	0.00307968	0	0
D4S234E	27065	broad.mit.edu	37	4	4389470	4389470	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:4389470C>T	uc011bvz.1	+	5	1395	c.114C>T	c.(112-114)TTC>TTT	p.F38F	D4S234E_uc011bwa.1_Silent_p.F38F|D4S234E_uc003ghz.2_Silent_p.F38F|D4S234E_uc003gia.2_Silent_p.F38F|D4S234E_uc003gib.2_Silent_p.F38F	NM_014392	NP_055207	P42857	NSG1_HUMAN	brain neuron cytoplasmic protein 1	38	Cytoplasmic (Potential).				dopamine receptor signaling pathway	Golgi membrane|integral to membrane|nucleus	dopamine receptor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.166)		AGCTGCAGTTCCCGCCCCCGG	0.632													5	17					0	0	0.000602214	0	0
WFS1	7466	broad.mit.edu	37	4	6303031	6303031	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:6303031C>T	uc003giy.2	+	8	1675	c.1509C>T	c.(1507-1509)GTC>GTT	p.V503V	WFS1_uc003gix.2_Silent_p.V503V|WFS1_uc003giz.2_Silent_p.V321V	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	503	Helical; (Potential).				endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		ACGTCAGCGTCCCGTGCCTGC	0.577													52	221					0	0	0.00361006	0	0
MAN2B2	23324	broad.mit.edu	37	4	6607052	6607052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:6607052G>A	uc003gjf.1	+	11	1846	c.1810G>A	c.(1810-1812)GAG>AAG	p.E604K	MAN2B2_uc003gje.1_Missense_Mutation_p.E604K|MAN2B2_uc011bwf.1_Missense_Mutation_p.E553K	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	604					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						CAGCATCTGGGAGAGGTAAGG	0.582													5	25					0	0	0.00198382	0	0
KIAA0232	9778	broad.mit.edu	37	4	6863659	6863659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:6863659C>T	uc003gjr.3	+	7	2013	c.1550C>T	c.(1549-1551)TCC>TTC	p.S517F	KIAA0232_uc003gjq.3_Missense_Mutation_p.S517F	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	517							ATP binding			ovary(2)	2						ATTGATCAATCCATGTTGGAT	0.388													9	33					0	0	0.000274275	0	0
TBC1D14	57533	broad.mit.edu	37	4	7000918	7000918	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:7000918C>T	uc011bwg.1	+	6	1231	c.1152C>T	c.(1150-1152)AAC>AAT	p.N384N	TBC1D14_uc003gjs.3_Silent_p.N384N|TBC1D14_uc010idh.2_Silent_p.N104N|TBC1D14_uc011bwh.1_5'UTR|TBC1D14_uc003gju.3_5'Flank	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	384						intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						TCTTACCTAACTGGGAAACAA	0.493													11	51					0	0	0.00185496	0	0
PSAPL1	768239	broad.mit.edu	37	4	7435758	7435758	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:7435758C>T	uc011bwj.1	-	1	943	c.849G>A	c.(847-849)CAG>CAA	p.Q283Q	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	283					sphingolipid metabolic process	extracellular region|lysosome					0						GCATCTCGCTCTGTTTCCTTG	0.592													5	18					0	0	0.000602214	0	0
SORCS2	57537	broad.mit.edu	37	4	7726961	7726961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:7726961C>T	uc003gkb.3	+	20	2692	c.2692C>T	c.(2692-2694)CCC>TCC	p.P898S	SORCS2_uc011bwi.1_Missense_Mutation_p.P726S	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	898	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						TGTGCTGCTTCCCTTGAACCC	0.622													8	16					0	0	0.00307968	0	0
AFAP1	60312	broad.mit.edu	37	4	7776622	7776622	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:7776622G>T	uc003gkg.1	-	14	1927	c.1654C>A	c.(1654-1656)CAG>AAG	p.Q552K	AFAP1_uc011bwk.1_Missense_Mutation_p.Q636K|LOC84740_uc003gkd.3_RNA	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	552						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						TACTTGTACTGGGCAGCATCT	0.348													9	132					0.00244969	0.00680291	0.00244969	1	0
AFAP1	60312	broad.mit.edu	37	4	7820830	7820830	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:7820830G>A	uc003gkg.1	-	7	1068	c.795C>T	c.(793-795)TCC>TCT	p.S265S	AFAP1_uc011bwk.1_Silent_p.S265S	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	265						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						TGTGCACCGGGGAGCTTGGTG	0.522													7	26					0	0	0.00307968	0	0
FBXL5	26234	broad.mit.edu	37	4	15640311	15640311	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:15640311G>A	uc003goc.1	-	4	506	c.403C>T	c.(403-405)CAG>TAG	p.Q135*	FBXL5_uc010idw.1_Nonsense_Mutation_p.Q48*|FBXL5_uc003gob.1_Nonsense_Mutation_p.Q9*|FBXL5_uc010idx.1_Nonsense_Mutation_p.Q135*|FBXL5_uc003god.1_Nonsense_Mutation_p.Q118*|FBXL5_uc010idy.1_Nonsense_Mutation_p.Q135*	NM_012161	NP_036293	Q9UKA1	FBXL5_HUMAN	F-box and leucine-rich repeat protein 5 isoform	135	Hemerythrin-like.				iron ion homeostasis|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|SCF ubiquitin ligase complex	iron ion binding|protein binding|ubiquitin-protein ligase activity				0						AACATGGGCTGAAAAACCTAA	0.333													7	30					0	0	0.00198382	0	0
LDB2	9079	broad.mit.edu	37	4	16900071	16900071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:16900071G>A	uc003goz.2	-	1	354	c.38C>T	c.(37-39)CCT>CTT	p.P13L	LDB2_uc003gpa.2_Missense_Mutation_p.P13L|LDB2_uc003gpb.2_Missense_Mutation_p.P13L|LDB2_uc011bxh.1_Missense_Mutation_p.P13L|LDB2_uc010iee.2_Missense_Mutation_p.P13L	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	13							LIM domain binding|transcription cofactor activity				0						TGGGCCGAAAGGAGAAGAATA	0.463													7	14					0	0	0.00307968	0	0
MIR218-1	407000	broad.mit.edu	37	4	20529930	20529930	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:20529930G>A	hsa-mir-218-1|MI0000294	+			c.33G>A			SLIT2_uc003gpr.1_Intron|SLIT2_uc003gps.1_Intron|uc011bxl.1_RNA																	0						TGTTGTGCTTGATCTAACCAT	0.463													16	43					0	0	0.000958276	0	0
SLIT2	9353	broad.mit.edu	37	4	20555568	20555568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:20555568C>T	uc003gpr.1	+	26	2906	c.2702C>T	c.(2701-2703)CCC>CTC	p.P901L	SLIT2_uc003gps.1_Missense_Mutation_p.P893L	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	901	LRRCT 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CTCACAACTCCCTCCAAAAAA	0.358													13	58					0	0	0.000422831	0	0
KCNIP4	80333	broad.mit.edu	37	4	21698995	21698995	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:21698995T>G	uc003gqh.1	-	1	324	c.66A>C	c.(64-66)CTA>CTC	p.L22L	KCNIP4_uc003gqi.1_Intron	NM_001035003	NP_001030175	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 5	Error:Variant_position_missing_in_Q6PIL6_after_alignment						plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				AACCTGTTAATAGTCTGAGAA	0.368													15	25					0	0	0.000958276	0	0
GBA3	57733	broad.mit.edu	37	4	22749170	22749170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:22749170C>T	uc003gqp.3	+	3	629	c.538C>T	c.(538-540)CCT>TCT	p.P180S	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Missense_Mutation_p.P181S	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	180					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						AGGTATGTTTCCTCCGGGTAT	0.438													20	65					0	0	0.00188189	0	0
ANAPC4	29945	broad.mit.edu	37	4	25384968	25384968	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:25384968G>A	uc003gro.2	+	4	450	c.321G>A	c.(319-321)GAG>GAA	p.E107E	ANAPC4_uc003grp.2_5'UTR	NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	107					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				TTTCTGTGGAGGCTCCAGTTT	0.348													19	60					0	0	0.000958276	0	0
SEL1L3	23231	broad.mit.edu	37	4	25783937	25783937	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:25783937T>C	uc003gru.3	-	15	2536	c.2384A>G	c.(2383-2385)AAC>AGC	p.N795S	SEL1L3_uc003grv.2_Missense_Mutation_p.N202S	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	795	Sel1-like 5.					integral to membrane	binding				0						CGCATCTGGGTTCCCCATTTC	0.463													8	57					0	0	0.000274275	0	0
CCKAR	886	broad.mit.edu	37	4	26491783	26491783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:26491783G>A	uc003gse.1	-	1	260	c.107C>T	c.(106-108)TCC>TTC	p.S36F		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	36	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	CTTACCTTTGGAAGGACGGGG	0.438													8	25					0	0	0.000673444	0	0
STIM2	57620	broad.mit.edu	37	4	27024441	27024441	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:27024441C>T	uc003gsh.3	+	13	2565	c.2349C>T	c.(2347-2349)ATC>ATT	p.I783I	STIM2_uc003gsg.3_Silent_p.I775I|STIM2_uc010iex.2_3'UTR|STIM2_uc010iey.2_3'UTR	NM_020860	NP_065911	Q9P246	STIM2_HUMAN	stromal interaction molecule 2	688	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|cellular calcium ion homeostasis|negative regulation of calcium ion transport via store-operated calcium channel activity	endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel regulator activity|calcium ion binding|protein binding			central_nervous_system(1)|skin(1)	2		Breast(46;0.0503)				CCAGTGGCATCCCGGTGCCTA	0.488													21	36					0	0	0.00152264	0	0
PTTG2	10744	broad.mit.edu	37	4	37962342	37962342	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:37962342A>C	uc011bye.1	+	1	287	c.287A>C	c.(286-288)AAG>ACG	p.K96T	TBC1D1_uc003gtb.2_Intron|TBC1D1_uc011byd.1_Intron|TBC1D1_uc010ifd.2_Intron	NM_006607	NP_006598	Q9NZH5	PTTG2_HUMAN	pituitary tumor-transforming 2	96					chromosome organization|DNA metabolic process	cytoplasm|nucleus	SH3 domain binding				0						ATGACCGAGAAGACTGTTAAA	0.403													14	64					0	0	0.000422831	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356167	40356167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:40356167G>A	uc003gva.1	+	5	1086	c.1070G>A	c.(1069-1071)AGC>AAC	p.S357N		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	357	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	GTGGGTGAAAGCTGCCTCAGC	0.557													15	73					0	0	0.000422831	0	0
LIMCH1	22998	broad.mit.edu	37	4	41496613	41496613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:41496613C>T	uc003gvu.3	+	2	211	c.157C>T	c.(157-159)CTC>TTC	p.L53F	LIMCH1_uc003gvt.1_Intron|LIMCH1_uc003gvv.3_Missense_Mutation_p.L53F|LIMCH1_uc003gvw.3_Missense_Mutation_p.L53F|LIMCH1_uc003gvx.3_Missense_Mutation_p.L53F|LIMCH1_uc003gwe.3_Missense_Mutation_p.L53F|LIMCH1_uc003gvy.3_5'UTR	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	53	CH.				actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AAATGGAATCCTCCTCTGCGA	0.333													25	95					0	0	0.00106085	0	0
LIMCH1	22998	broad.mit.edu	37	4	41648236	41648236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:41648236G>A	uc003gvu.3	+	11	1249	c.1195G>A	c.(1195-1197)GAA>AAA	p.E399K	LIMCH1_uc003gvv.3_Missense_Mutation_p.E399K|LIMCH1_uc003gvw.3_Missense_Mutation_p.E399K|LIMCH1_uc003gvx.3_Missense_Mutation_p.E387K|LIMCH1_uc003gwe.3_Missense_Mutation_p.E399K|LIMCH1_uc003gvy.3_Missense_Mutation_p.E228K|LIMCH1_uc003gwa.3_Missense_Mutation_p.E240K|LIMCH1_uc003gvz.3_Missense_Mutation_p.E784K|LIMCH1_uc011byu.1_Missense_Mutation_p.E233K|LIMCH1_uc003gwc.3_Missense_Mutation_p.E245K|LIMCH1_uc003gwd.3_Missense_Mutation_p.E233K|LIMCH1_uc011byv.1_Missense_Mutation_p.E150K	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	399	Potential.				actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						ACTGGCTGGAGAAGATGGGAC	0.388													10	44					0	0	0.000978159	0	0
ATP8A1	10396	broad.mit.edu	37	4	42445675	42445675	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:42445675C>T	uc003gwr.2	-	33	3262	c.3030G>A	c.(3028-3030)GCG>GCA	p.A1010A	ATP8A1_uc003gwq.2_Silent_p.A236A|ATP8A1_uc003gws.2_Silent_p.A995A	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1010	Helical; (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TCCCCCATATCGCTATGTGGC	0.438													5	26					0	0	0.00198382	0	0
ATP8A1	10396	broad.mit.edu	37	4	42457419	42457419	+	Silent	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:42457419A>T	uc003gwr.2	-	29	2944	c.2712T>A	c.(2710-2712)CCT>CCA	p.P904P	ATP8A1_uc003gwq.2_Silent_p.P130P|ATP8A1_uc003gws.2_Silent_p.P889P	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	904	Helical; (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GAGTTAAAGGAGGCATTGCTG	0.393													9	50					0	0	0.000442599	0	0
KCTD8	386617	broad.mit.edu	37	4	44176909	44176909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:44176909C>T	uc003gwu.2	-	2	1604	c.1320G>A	c.(1318-1320)ATG>ATA	p.M440I		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	440						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						TACACTTTTTCATTTCTTCTT	0.398										HNSCC(17;0.042)			25	93					0	0	0.00278032	0	0
KCTD8	386617	broad.mit.edu	37	4	44177162	44177162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:44177162G>A	uc003gwu.2	-	2	1351	c.1067C>T	c.(1066-1068)TCC>TTC	p.S356F		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	356						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						ACTGGAAGTGGAGAGCTCATT	0.458										HNSCC(17;0.042)			14	36					0	0	0.00185496	0	0
KCTD8	386617	broad.mit.edu	37	4	44177177	44177177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:44177177G>A	uc003gwu.2	-	2	1336	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	351						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						CTCATTACAGGAAGTCCCACT	0.468										HNSCC(17;0.042)			14	35					0	0	0.00244969	0	0
GABRB1	2560	broad.mit.edu	37	4	47427898	47427898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:47427898C>T	uc003gxh.2	+	9	1662	c.1288C>T	c.(1288-1290)CGC>TGC	p.R430C	GABRB1_uc011bze.1_Missense_Mutation_p.R360C	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	430	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GGGGCGCATCCGCAGGCGTGC	0.607													7	22					0	0	0.00307968	0	0
CORIN	10699	broad.mit.edu	37	4	47695045	47695045	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:47695045C>T	uc003gxm.2	-	6	948	c.855G>A	c.(853-855)GGG>GGA	p.G285G	CORIN_uc011bzf.1_Silent_p.G146G|CORIN_uc011bzg.1_Silent_p.G218G|CORIN_uc011bzh.1_Silent_p.G285G|CORIN_uc011bzi.1_Silent_p.G285G|CORIN_uc003gxn.3_Silent_p.G285G	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	285	Extracellular (Potential).|LDL-receptor class A 1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						ATTGCAGTTTCCCGGGGATGC	0.468													14	23					0	0	0.00074312	0	0
CORIN	10699	broad.mit.edu	37	4	47765520	47765520	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:47765520T>A	uc003gxm.2	-	4	586	c.493A>T	c.(493-495)AAC>TAC	p.N165Y	CORIN_uc011bzf.1_Missense_Mutation_p.N26Y|CORIN_uc011bzg.1_Missense_Mutation_p.N98Y|CORIN_uc011bzh.1_Missense_Mutation_p.N165Y|CORIN_uc011bzi.1_Missense_Mutation_p.N165Y|CORIN_uc003gxn.3_Missense_Mutation_p.N165Y	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	165	Extracellular (Potential).|FZ 1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						ATTTCCATGTTTCTGACAACT	0.488													23	74					0	0	0.000720815	0	0
FRYL	285527	broad.mit.edu	37	4	48529500	48529500	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:48529500A>C	uc003gyh.1	-	53	7916	c.7311T>G	c.(7309-7311)GAT>GAG	p.D2437E	FRYL_uc003gyg.1_Missense_Mutation_p.D1133E|FRYL_uc003gyi.1_Missense_Mutation_p.D1325E|FRYL_uc003gyj.1_Missense_Mutation_p.D732E	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	2437					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TTACCTCTGCATCTTCCAATT	0.348													10	58					0	0	0.000673444	0	0
FRYL	285527	broad.mit.edu	37	4	48597968	48597968	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:48597968A>G	uc003gyh.1	-	14	1690	c.1085T>C	c.(1084-1086)TTA>TCA	p.L362S	FRYL_uc003gyk.2_Missense_Mutation_p.L362S	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	362					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						AACCCACAATAATCTATACAA	0.274													11	54					0	0	0.00316338	0	0
OCIAD1	54940	broad.mit.edu	37	4	48844704	48844704	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:48844704A>T	uc003gyo.2	+	4	448	c.191A>T	c.(190-192)AAA>ATA	p.K64I	OCIAD1_uc011bzk.1_RNA|OCIAD1_uc003gyr.2_Missense_Mutation_p.K64I|OCIAD1_uc003gyp.2_Missense_Mutation_p.K64I|OCIAD1_uc003gys.2_Missense_Mutation_p.K64I|OCIAD1_uc003gyq.2_Missense_Mutation_p.K64I|OCIAD1_uc010igk.2_Missense_Mutation_p.K69I	NM_017830	NP_060300	Q9NX40	OCAD1_HUMAN	OCIA domain containing 1 isoform 1	64	OCIA.					endosome	protein binding				0						TTAATTAGTAAAGGTAAATAT	0.279													11	75					0	0	0.000978159	0	0
CWH43	80157	broad.mit.edu	37	4	49052849	49052849	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:49052849A>T	uc003gyv.2	+	15	2186	c.2004A>T	c.(2002-2004)AAA>AAT	p.K668N	CWH43_uc011bzl.1_Missense_Mutation_p.K641N	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	668					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						TTTCTGAGAAAATTCATTTTA	0.388													5	18					0	0	0.00116845	0	0
CWH43	80157	broad.mit.edu	37	4	49063860	49063860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:49063860G>A	uc003gyv.2	+	16	2235	c.2053G>A	c.(2053-2055)GAA>AAA	p.E685K	CWH43_uc011bzl.1_Missense_Mutation_p.E658K	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	685					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						ACACAATTATGAAAACAACCA	0.259													15	51					0	0	0.00121646	0	0
LRRC66	339977	broad.mit.edu	37	4	52860816	52860816	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:52860816T>A	uc003gzi.2	-	4	2385	c.2372A>T	c.(2371-2373)GAA>GTA	p.E791V		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	791						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						AGAGGCATTTTCCAGATGAGT	0.478													9	13					0	0	0.000274275	0	0
PDGFRA	5156	broad.mit.edu	37	4	55127443	55127443	+	Silent	SNP	C	T	T	rs143939281		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:55127443C>T	uc003han.3	+	3	562	c.231C>T	c.(229-231)AAC>AAT	p.N77N	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_Silent_p.N77N|PDGFRA_uc010igq.1_Intron|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	77	Ig-like C2-type 1.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	AAGAAAACAACAGCGGCCTTT	0.498			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			24	77					0	0	0.000878237	0	0
KDR	3791	broad.mit.edu	37	4	55972087	55972087	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:55972087G>A	uc003has.2	-	12	1859	c.1557C>T	c.(1555-1557)ATC>ATT	p.I519I	KDR_uc003hat.1_Silent_p.I519I|KDR_uc011bzx.1_Silent_p.I519I	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	519	Ig-like C2-type 5.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTGCCGCTTGGATAACAAGGG	0.493			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			18	65					0	0	0.000958276	0	0
CEP135	9662	broad.mit.edu	37	4	56818404	56818404	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:56818404T>C	uc003hbi.2	+	2	342	c.108T>C	c.(106-108)CTT>CTC	p.L36L	CEP135_uc003hbh.1_Silent_p.L36L|CEP135_uc010igz.1_5'Flank	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	36					centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					TAGAAAAACTTTTCAGGTAAA	0.383													3	29					0	0	6.4e-05	0	0
TECRL	253017	broad.mit.edu	37	4	65145907	65145907	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:65145907A>G	uc003hcv.2	-	12	1084	c.975T>C	c.(973-975)TTT>TTC	p.F325F	TECRL_uc010ihi.2_RNA	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	325	Helical; (Potential).				lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						TCAGAAGTGTAAAAATTCCAA	0.269													8	43					0	0	0.000673444	0	0
TECRL	253017	broad.mit.edu	37	4	65170939	65170939	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:65170939C>T	uc003hcv.2	-	7	784	c.675G>A	c.(673-675)TGG>TGA	p.W225*	TECRL_uc003hcw.2_Nonsense_Mutation_p.W225*	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	225	Helical; (Potential).				lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						AAGTAAATCCCCAGTAAAAGG	0.299													12	57					0	0	0.00136819	0	0
STAP1	26228	broad.mit.edu	37	4	68441174	68441174	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:68441174G>A	uc003hde.3	+	3	346	c.264G>A	c.(262-264)GCG>GCA	p.A88A	STAP1_uc003hdf.2_Silent_p.A88A	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	88	PH.				cellular membrane fusion|intracellular protein transport	cytoplasm					0						AGAACTGTGCGAAATTCACCC	0.388													11	30					0	0	0.00244969	0	0
STAP1	26228	broad.mit.edu	37	4	68459022	68459022	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:68459022G>A	uc003hde.3	+	8	856	c.774G>A	c.(772-774)AAG>AAA	p.K258K	STAP1_uc003hdf.2_Silent_p.K258K	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	258	SH2.				cellular membrane fusion|intracellular protein transport	cytoplasm					0						ATTTTGTGAAGGAGACTCGAG	0.323													16	87					0	0	0.00074312	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68703983	68703983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:68703983C>T	uc003hdq.2	-	5	447	c.382G>A	c.(382-384)GGA>AGA	p.G128R	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc011caj.1_Missense_Mutation_p.G11R	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	128	SEA.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						ATTGATGCTCCATTGTTATTT	0.328													6	26					0	0	0.00116845	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68780365	68780365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:68780365C>T	uc003hdr.1	-	9	1166	c.1045G>A	c.(1045-1047)GAT>AAT	p.D349N	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.D346N	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	349	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						GGTTTTATATCATTGCCATAC	0.383													13	80					0	0	0.00185496	0	0
YTHDC1	91746	broad.mit.edu	37	4	69188609	69188609	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:69188609G>A	uc003hdx.2	-	11	1812	c.1459C>T	c.(1459-1461)CAG>TAG	p.Q487*	YTHDC1_uc003hdy.2_Nonsense_Mutation_p.Q469*	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	487	YTH.									upper_aerodigestive_tract(1)|ovary(1)	2						AGACAAAGCTGGGTTCCACAT	0.398													6	41					0	0	0.00198382	0	0
UGT2B15	7366	broad.mit.edu	37	4	69512849	69512849	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:69512849T>C	uc011cal.1	-	6	1604	c.1566A>G	c.(1564-1566)AAA>AAG	p.K522K		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	522					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TCTTTCCTTTTTTGGCAAGCT	0.393													20	92					0	0	0.00106085	0	0
UGT2B15	7366	broad.mit.edu	37	4	69536328	69536328	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:69536328C>T	uc011cal.1	-	1	47	c.9G>A	c.(7-9)CTG>CTA	p.L3L		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	3					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						ACGTCCATTTCAGAGACATCC	0.398													75	147					0	0	0.00361006	0	0
UGT2B10	7365	broad.mit.edu	37	4	69683876	69683876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:69683876C>T	uc003hee.2	+	2	873	c.848C>T	c.(847-849)CCT>CTT	p.P283L	UGT2B10_uc011cam.1_Missense_Mutation_p.P199L	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	283					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CACTGCAAACCTGCCAAACCC	0.373													12	61					0	0	0.00244969	0	0
UGT2B11	10720	broad.mit.edu	37	4	70066355	70066355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:70066355C>T	uc003heh.2	-	6	1402	c.1393G>A	c.(1393-1395)GAA>AAA	p.E465K	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	465					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						ATGACAAATTCAATCCAGAAG	0.418													7	21					0	0	0.00198382	0	0
UGT2B11	10720	broad.mit.edu	37	4	70080130	70080130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:70080130C>T	uc003heh.2	-	1	320	c.311G>A	c.(310-312)AGC>AAC	p.S104N	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	104					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TAACCAAAAGCTATCTTTTCG	0.289													19	25					0	0	0.00395357	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146547	70146547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:70146547C>T	uc003hej.2	+	1	331	c.329C>T	c.(328-330)TCA>TTA	p.S110L	UGT2B28_uc010ihr.2_Missense_Mutation_p.S110L	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	110					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	TTATATTTTTCACAAGAACAA	0.294													20	34					0	0	0.00229938	0	0
UGT2B4	7363	broad.mit.edu	37	4	70346364	70346364	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:70346364C>T	uc003hek.3	-	6	1622	c.1575G>A	c.(1573-1575)GGG>GGA	p.G525G	UGT2B4_uc011cap.1_Silent_p.G389G|UGT2B4_uc003hel.3_3'UTR	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	525					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AATCTCTTTTCCCCTTCTTTC	0.408													9	36					0	0	0.000978159	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361013	70361013	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:70361013G>A	uc003hek.3	-	1	614	c.567C>T	c.(565-567)TTC>TTT	p.F189F	UGT2B4_uc011cap.1_Silent_p.F53F|UGT2B4_uc003hel.3_Silent_p.F189F	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	189					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AGGAAGGAGGGAACAGAAGTC	0.413													6	19					0	0	0.000274275	0	0
SULT1B1	27284	broad.mit.edu	37	4	70615461	70615461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:70615461G>A	uc003hen.2	-	4	651	c.353C>T	c.(352-354)TCT>TTT	p.S118F		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	118					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						TTCCCAGAAAGATTTAGGAAG	0.368													11	55					0	0	0.00136819	0	0
PROL1	58503	broad.mit.edu	37	4	71275639	71275639	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:71275639A>C	uc003hfi.2	+	3	768	c.594A>C	c.(592-594)GCA>GCC	p.A198A		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	198	Thr-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CAACCCCCGCAGCATCTACTG	0.473													12	55					0	0	0.00136819	0	0
MUC7	4589	broad.mit.edu	37	4	71347045	71347045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:71347045C>T	uc011cat.1	+	4	872	c.584C>T	c.(583-585)CCT>CTT	p.P195L	MUC7_uc011cau.1_Missense_Mutation_p.P195L|MUC7_uc003hfj.2_Missense_Mutation_p.P195L|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	195	2.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CCACCCACACCTTCTGCAACT	0.592													12	51					0	0	0.00244969	0	0
MUC7	4589	broad.mit.edu	37	4	71347075	71347075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:71347075C>T	uc011cat.1	+	4	902	c.614C>T	c.(613-615)TCC>TTC	p.S205F	MUC7_uc011cau.1_Missense_Mutation_p.S205F|MUC7_uc003hfj.2_Missense_Mutation_p.S205F|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	205	2.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CCACCATCTTCCTCAGCTCCA	0.592													22	31					0	0	0.00332997	0	0
ENAM	10117	broad.mit.edu	37	4	71508434	71508434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:71508434G>A	uc011caw.1	+	9	1572	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	431					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			TGTTCGCAATGAAAAAATCCA	0.468													11	32					0	0	0.000673444	0	0
SLC4A4	8671	broad.mit.edu	37	4	72316972	72316972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:72316972G>A	uc003hfy.2	+	11	1393	c.1276G>A	c.(1276-1278)GGA>AGA	p.G426R	SLC4A4_uc010iic.2_Missense_Mutation_p.G426R|SLC4A4_uc010iib.2_Missense_Mutation_p.G426R|SLC4A4_uc003hfz.2_Missense_Mutation_p.G426R|SLC4A4_uc003hgc.3_Missense_Mutation_p.G382R|SLC4A4_uc010iid.2_5'UTR|SLC4A4_uc003hga.2_Missense_Mutation_p.G304R|SLC4A4_uc003hgb.3_Missense_Mutation_p.G382R	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	426	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TGGAGGTCACGGAGGAGGAGG	0.443													9	45					0	0	0.000442599	0	0
SLC4A4	8671	broad.mit.edu	37	4	72338444	72338444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:72338444C>T	uc003hfy.2	+	14	1777	c.1660C>T	c.(1660-1662)CGC>TGC	p.R554C	SLC4A4_uc010iic.2_Missense_Mutation_p.R554C|SLC4A4_uc010iib.2_Missense_Mutation_p.R554C|SLC4A4_uc003hfz.2_Missense_Mutation_p.R554C|SLC4A4_uc003hgc.3_Missense_Mutation_p.R510C|SLC4A4_uc010iid.2_Intron|SLC4A4_uc003hga.2_Missense_Mutation_p.R432C|SLC4A4_uc003hgb.3_Missense_Mutation_p.R510C	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	554	Cytoplasmic (Potential).		R -> H (in pRTA-OA; mistargeting and altered function).	R->D: Prevents membrane targeting.		basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TTTGGAGTTTCGCCTTTGGAT	0.408													10	63					0	0	0.000978159	0	0
PPBP	5473	broad.mit.edu	37	4	74853054	74853054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:74853054G>A	uc003hhj.2	-	3	402	c.322C>T	c.(322-324)CCA>TCA	p.P108S		NM_002704	NP_002695	P02775	CXCL7_HUMAN	pro-platelet basic protein precursor	108					chemotaxis|defense response to bacterium|immune response|platelet activation|platelet degranulation|positive regulation of cell division	extracellular space|platelet alpha granule lumen	chemokine activity|glucose transmembrane transporter activity|growth factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(15;0.00136)		all cancers(17;0.00273)|Lung(101;0.196)			GGAGCATCTGGGTCCAGGCAG	0.423													7	41					0	0	0.00198382	0	0
MTHFD2L	441024	broad.mit.edu	37	4	75065601	75065601	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:75065601T>C	uc003hhn.1	+	7	886	c.368T>C	c.(367-369)CTT>CCT	p.L123P	MTHFD2L_uc011cbj.1_Missense_Mutation_p.L123P|MTHFD2L_uc011cbk.1_Missense_Mutation_p.L181P	NM_001144978	NP_001138450	Q9H903	MTD2L_HUMAN	methylenetetrahydrofolate dehydrogenase 2-like	123					folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process		binding|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2			all cancers(17;0.0101)|Lung(101;0.196)			AGATTGTGCCTTGATCAGCAT	0.398													9	50					0	0	0.000673444	0	0
BTC	685	broad.mit.edu	37	4	75695356	75695356	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:75695356G>A	uc003hig.2	-	2	422	c.75C>T	c.(73-75)ATC>ATT	p.I25I		NM_001729	NP_001720	P35070	BTC_HUMAN	betacellulin precursor	25					positive regulation of cell division|positive regulation of cell proliferation	extracellular space|integral to membrane|plasma membrane|soluble fraction	epidermal growth factor receptor binding|growth factor activity			central_nervous_system(1)|skin(1)	2			Lung(101;0.219)			CACAGTGAAGGATCACTAGAC	0.408													14	40					0	0	0.00074312	0	0
BMP2K	55589	broad.mit.edu	37	4	79832642	79832642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:79832642C>T	uc003hlk.2	+	16	3107	c.2941C>T	c.(2941-2943)CGC>TGC	p.R981C	PAQR3_uc003hlm.2_Intron|PAQR3_uc003hln.2_Intron|uc010ijm.1_5'Flank	NM_198892	NP_942595	Q9NSY1	BMP2K_HUMAN	BMP-2 inducible kinase isoform a	981						nucleus	ATP binding|protein serine/threonine kinase activity			lung(1)	1						ACTGTCCTCTCGCCAAAGGCG	0.488													8	25					0	0	0.000274275	0	0
NAA11	84779	broad.mit.edu	37	4	80246972	80246972	+	Silent	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:80246972A>T	uc003hlt.3	-	1	200	c.60T>A	c.(58-60)CTT>CTA	p.L20L		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	20	Interaction with NAA15 (By similarity).|N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						CAGGAAGGCAAAGGAGGTTGC	0.502													10	36					0	0	0.000673444	0	0
GK2	2712	broad.mit.edu	37	4	80328545	80328545	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:80328545G>A	uc003hlu.2	-	1	828	c.810C>T	c.(808-810)TTC>TTT	p.F270F		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	270					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GTCCCTCCTGGAAGCACATTT	0.463													6	63					0	0	0.00116845	0	0
PRKG2	5593	broad.mit.edu	37	4	82010939	82010939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:82010939G>A	uc003hmh.2	-	18	2226	c.2212C>T	c.(2212-2214)CAC>TAC	p.H738Y	PRKG2_uc011ccf.1_Missense_Mutation_p.H318Y|PRKG2_uc011ccg.1_Missense_Mutation_p.H318Y|PRKG2_uc011cch.1_Missense_Mutation_p.H709Y	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	738	AGC-kinase C-terminal.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						AAGTAGCTGTGATCTATGGGT	0.368													7	40					0	0	0.00198382	0	0
SCD5	79966	broad.mit.edu	37	4	83602041	83602041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:83602041C>T	uc003hna.2	-	3	708	c.388G>A	c.(388-390)GAC>AAC	p.D130N	SCD5_uc003hnb.3_Missense_Mutation_p.D130N	NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	130					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				GCTCGGTGGTCCCTGGACCAC	0.582													7	37					0	0	0.000442599	0	0
LIN54	132660	broad.mit.edu	37	4	83858424	83858424	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:83858424C>T	uc003hnx.3	-	9	1938	c.1560G>A	c.(1558-1560)CGG>CGA	p.R520R	LIN54_uc003hnz.3_Silent_p.R299R|LIN54_uc003hny.3_Silent_p.R119R|LIN54_uc010ijt.2_Silent_p.R431R|LIN54_uc010iju.2_Silent_p.R119R|LIN54_uc010ijv.2_Silent_p.R299R	NM_194282	NP_919258	Q6MZP7	LIN54_HUMAN	lin-54 homolog isoform a	520	CXC 1.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		Hepatocellular(203;0.114)				GCTTTCGGGGCCGACTGGCCG	0.313													32	132					0	0	0.000814825	0	0
DSPP	1834	broad.mit.edu	37	4	88533671	88533671	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:88533671G>A	uc003hqu.2	+	4	453	c.333G>A	c.(331-333)GGG>GGA	p.G111G		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	111					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		GCTGGAATGGGGACACAGGAA	0.438													5	15					0	0	0.000602214	0	0
DSPP	1834	broad.mit.edu	37	4	88533679	88533679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:88533679G>A	uc003hqu.2	+	4	461	c.341G>A	c.(340-342)GGA>GAA	p.G114E		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	114					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		GGGGACACAGGAAAAGCAGAA	0.433													6	15					0	0	0.00198382	0	0
MEPE	56955	broad.mit.edu	37	4	88766817	88766817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:88766817C>T	uc003hqy.2	+	4	836	c.797C>T	c.(796-798)CCT>CTT	p.P266L	MEPE_uc010ikn.2_Missense_Mutation_p.P153L	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	266					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AAGGACATTCCTGGTAAAGGA	0.458													6	24					0	0	0.00116845	0	0
SPP1	6696	broad.mit.edu	37	4	88904004	88904004	+	Missense_Mutation	SNP	C	T	T	rs11544553		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:88904004C>T	uc003hra.2	+	7	1066	c.901C>T	c.(901-903)CGT>TGT	p.R301C	SPP1_uc003hrb.2_Missense_Mutation_p.R274C|SPP1_uc003hrc.2_Missense_Mutation_p.R287C|SPP1_uc011cde.1_Missense_Mutation_p.R314C|SPP1_uc003hrd.2_Missense_Mutation_p.R260C	NM_001040058	NP_001035147	P10451	OSTP_HUMAN	secreted phosphoprotein 1 isoform a	301					biomineral tissue development|cell adhesion|decidualization|embryo implantation|ossification|response to vitamin D	extracellular space	cytokine activity			ovary(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-05)		CCTGAAATTTCGTATTTCTCA	0.348													11	49					0	0	0.000673444	0	0
ABCG2	9429	broad.mit.edu	37	4	89028360	89028360	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:89028360T>A	uc003hrg.2	-	10	1746	c.1253A>T	c.(1252-1254)AAT>ATT	p.N418I	ABCG2_uc003hrh.2_Missense_Mutation_p.N418I|ABCG2_uc003hrf.2_Missense_Mutation_p.N286I	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	418	Extracellular (Potential).|ABC transmembrane type-2.	Not glycosylated.		N->Q: No effect.	cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	AGTAGAATCATTTTTTAGCCC	0.333													5	30					0	0	0.00307968	0	0
HERC6	55008	broad.mit.edu	37	4	89311819	89311819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:89311819C>T	uc011cdi.1	+	4	635	c.452C>T	c.(451-453)TCG>TTG	p.S151L	HERC6_uc003hrp.1_RNA|HERC6_uc011cdj.1_Missense_Mutation_p.S151L|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	151	RCC1 3.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		CAAGTGTTTTCGTGGGGAAAG	0.463													7	18					0	0	0.000673444	0	0
GPRIN3	285513	broad.mit.edu	37	4	90170573	90170573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:90170573G>A	uc003hsm.1	-	2	1208	c.689C>T	c.(688-690)TCT>TTT	p.S230F		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	230										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		CCTCATTTCAGAGTCACAGAT	0.547													5	21					0	0	0.00116845	0	0
MMRN1	22915	broad.mit.edu	37	4	90857003	90857003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:90857003G>A	uc003hst.2	+	6	2243	c.2172G>A	c.(2170-2172)ATG>ATA	p.M724I	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.M466I	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	724	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CCTTAGAAATGGAAGATGGCC	0.313													5	29					0	0	0.000602214	0	0
FAM190A	401145	broad.mit.edu	37	4	91230231	91230231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:91230231G>A	uc003hsv.3	+	2	1136	c.796G>A	c.(796-798)GAT>AAT	p.D266N	FAM190A_uc003hsu.3_Missense_Mutation_p.D266N|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.D266N	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	266										large_intestine(1)|ovary(1)	2						CTTGACTGAAGATTCTGTGTC	0.438													33	84					0	0	0.0024448	0	0
GRID2	2895	broad.mit.edu	37	4	94031943	94031943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:94031943G>A	uc011cdt.1	+	4	832	c.574G>A	c.(574-576)GGA>AGA	p.G192R	GRID2_uc010ikx.2_Missense_Mutation_p.G192R|GRID2_uc011cdu.1_Missense_Mutation_p.G97R|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	192	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CTCTCAGCAGGGAATGGATGT	0.398													10	40					0	0	0.000442599	0	0
GRID2	2895	broad.mit.edu	37	4	94159621	94159621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:94159621C>T	uc011cdt.1	+	8	1483	c.1225C>T	c.(1225-1227)CTT>TTT	p.L409F	GRID2_uc011cdu.1_Missense_Mutation_p.L314F|GRID2_uc010ikz.1_Missense_Mutation_p.L90F	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	409	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TGGAGAAGAGCTTGGCAGAGG	0.418													9	19					0	0	0.00136819	0	0
ADH4	127	broad.mit.edu	37	4	100057780	100057780	+	Missense_Mutation	SNP	C	T	T	rs139053416		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:100057780C>T	uc003hun.2	-	5	495	c.419G>A	c.(418-420)GGA>GAA	p.G140E	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.G159E	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	140					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding	p.G140E(1)		skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	AACTGGTTTTCCTTTGCAGGT	0.348													17	28					0	0	0.000958276	0	0
ADH6	130	broad.mit.edu	37	4	100131640	100131640	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:100131640G>A	uc003hup.3	-	4	376	c.282C>T	c.(280-282)CTC>CTT	p.L94L	uc003hum.1_Intron|ADH6_uc003huo.2_Silent_p.L94L|ADH6_uc011cef.1_5'UTR|ADH6_uc010ile.2_Silent_p.L94L	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	94					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	GTGGCAGAAAGAGTGTGATAA	0.308													7	78					0	0	0.00198382	0	0
ADH1C	126	broad.mit.edu	37	4	100263983	100263983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:100263983G>A	uc003huu.2	-	8	882	c.797C>T	c.(796-798)TCG>TTG	p.S266L		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	266					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	GACTTCAAACGAAAAATCCAC	0.463									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				26	84					0	0	0.00127121	0	0
BANK1	55024	broad.mit.edu	37	4	102946525	102946525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:102946525G>A	uc003hvy.3	+	9	1727	c.1453G>A	c.(1453-1455)GAT>AAT	p.D485N	BANK1_uc003hvx.3_Missense_Mutation_p.D470N|BANK1_uc010ill.2_Missense_Mutation_p.D352N|BANK1_uc003hvz.3_Missense_Mutation_p.D455N	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	485					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		AGACCAGTATGATGACTTGTA	0.502													11	14					0	0	0.00136819	0	0
UBE2D3	7323	broad.mit.edu	37	4	103723746	103723747	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:103723746_103723747GG>CA	uc003hwk.2	-	5	630_631	c.169_170CC>TG	c.(169-171)CCT>TGT	p.P57C	UBE2D3_uc003hwi.2_Missense_Mutation_p.P57C|UBE2D3_uc003hwj.2_RNA|UBE2D3_uc003hwl.2_Missense_Mutation_p.P57C|UBE2D3_uc011cet.1_Missense_Mutation_p.P57C|UBE2D3_uc011ceu.1_Missense_Mutation_p.P57C|UBE2D3_uc003hwo.2_Missense_Mutation_p.P57C|UBE2D3_uc003hwp.2_Missense_Mutation_p.P57C|UBE2D3_uc003hwq.2_Missense_Mutation_p.P59C|UBE2D3_uc003hwr.2_Missense_Mutation_p.P57C	NM_181887	NP_871616	P61077	UB2D3_HUMAN	ubiquitin-conjugating enzyme E2D 3 isoform 1	57					apoptosis|BMP signaling pathway|DNA repair|negative regulation of type I interferon production|proteasomal ubiquitin-dependent protein catabolic process|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein monoubiquitination|transforming growth factor beta receptor signaling pathway	endosome membrane|plasma membrane	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.13e-08)		GTAGTCTGTAGGAAAATGAATT	0.317													12	57					0	0	6.4e-05	0	0
TET2	54790	broad.mit.edu	37	4	106158123	106158123	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:106158123G>A	uc003hxk.2	+	3	3410	c.3024G>A	c.(3022-3024)AAG>AAA	p.K1008K	TET2_uc011cez.1_Silent_p.K1029K|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Silent_p.K1008K|TET2_uc003hxi.1_Silent_p.K1008K	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	1008					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		AGGTAACTAAGCAAGAGAATC	0.463			Mis N|F		MDS								5	16					0	0	0.000602214	0	0
LEF1	51176	broad.mit.edu	37	4	109004570	109004570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:109004570G>A	uc003hyt.1	-	5	1235	c.580C>T	c.(580-582)CCT>TCT	p.P194S	LEF1_uc011cfj.1_Missense_Mutation_p.P79S|LEF1_uc011cfk.1_Missense_Mutation_p.P126S|LEF1_uc003hyu.1_Missense_Mutation_p.P194S|LEF1_uc003hyv.1_Missense_Mutation_p.P194S|LEF1_uc010imb.1_RNA	NM_016269	NP_057353	Q9UJU2	LEF1_HUMAN	lymphoid enhancer-binding factor 1 isoform 1	194	Pro-rich.				canonical Wnt receptor signaling pathway|cell chemotaxis|cellular response to interleukin-4|epithelial to mesenchymal transition|histone H3 acetylation|histone H4 acetylation|negative regulation of apoptosis in bone marrow|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell-cell adhesion|negative regulation of DNA binding|negative regulation of estrogen receptor binding|negative regulation of interleukin-13 production|negative regulation of interleukin-4 production|negative regulation of interleukin-5 production|negative regulation of transcription, DNA-dependent|neutrophil differentiation|osteoblast differentiation|palate development|positive regulation by host of viral transcription|positive regulation of cell cycle process|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cell proliferation in bone marrow|positive regulation of cell-cell adhesion|positive regulation of epithelial to mesenchymal transition|positive regulation of granulocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|T-helper 1 cell differentiation	cytoplasm|protein-DNA complex|transcription factor complex	armadillo repeat domain binding|beta-catenin binding|C2H2 zinc finger domain binding|caspase inhibitor activity|DNA bending activity|enhancer binding|estrogen receptor activity|estrogen receptor binding|gamma-catenin binding|histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding			large_intestine(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000224)		TAAAAAGTAGGGATATCAGGA	0.463													8	30					0	0	0.000442599	0	0
GAR1	54433	broad.mit.edu	37	4	110739239	110739239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:110739239G>A	uc003hzt.2	+	3	669	c.362G>A	c.(361-363)AGA>AAA	p.R121K	GAR1_uc003hzu.2_Missense_Mutation_p.R121K|GAR1_uc010imh.1_Missense_Mutation_p.R121K|GAR1_uc010imi.2_Missense_Mutation_p.R121K	NM_018983	NP_061856	Q9NY12	GAR1_HUMAN	nucleolar protein family A, member 1	121					rRNA processing|snRNA pseudouridine synthesis	box H/ACA snoRNP complex|Cajal body	cation channel activity|pseudouridine synthase activity|snoRNA binding				0						GGACAACTCAGAGATTTTGTA	0.328													20	47					0	0	0.00229938	0	0
ANK2	287	broad.mit.edu	37	4	114262906	114262906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:114262906G>A	uc003ibe.3	+	33	4056	c.3956G>A	c.(3955-3957)AGA>AAA	p.R1319K	ANK2_uc003ibd.3_Missense_Mutation_p.R1310K|ANK2_uc003ibf.3_Missense_Mutation_p.R1319K|ANK2_uc011cgc.1_Missense_Mutation_p.R495K|ANK2_uc003ibg.3_Missense_Mutation_p.R314K|ANK2_uc003ibh.3_5'UTR|ANK2_uc011cgb.1_Missense_Mutation_p.R1334K	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1286					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CAAGTATACAGAGAAATTATC	0.373													28	74					0	0	0.00178596	0	0
NDST4	64579	broad.mit.edu	37	4	115858527	115858527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:115858527G>A	uc003ibu.2	-	5	2033	c.1354C>T	c.(1354-1356)CCA>TCA	p.P452S	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	452	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TTCAGATGTGGATATTCTTCA	0.468													16	36					0	0	0.00074312	0	0
NDST4	64579	broad.mit.edu	37	4	115891740	115891740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:115891740C>T	uc003ibu.2	-	4	1746	c.1067G>A	c.(1066-1068)GGG>GAG	p.G356E	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	356	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CTCTTCAGTCCCTTTAAAACA	0.368													4	11					0	0	0.00024832	0	0
METTL14	57721	broad.mit.edu	37	4	119626904	119626904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:119626904C>T	uc003icf.2	+	10	1110	c.994C>T	c.(994-996)CAT>TAT	p.H332Y	METTL14_uc003icg.2_Missense_Mutation_p.H294Y	NM_020961	NP_066012	Q9HCE5	MTL14_HUMAN	methyltransferase like 14	332						nucleus	mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity				0						AGAAATTTTTCATATAATTGA	0.353													31	34					0	0	0.000814825	0	0
SEC24D	9871	broad.mit.edu	37	4	119654012	119654012	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:119654012T>G	uc003ici.3	-	20	2824	c.2552A>C	c.(2551-2553)AAA>ACA	p.K851T	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Missense_Mutation_p.K852T|SEC24D_uc003ick.2_Missense_Mutation_p.K13T	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	851					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TACACAGTTTTTCAACAAGCA	0.373													13	59					0	0	0.000422831	0	0
C4orf31	79625	broad.mit.edu	37	4	121958645	121958645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:121958645C>T	uc003idq.1	-	4	1008	c.481G>A	c.(481-483)GTA>ATA	p.V161I		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	161											0						GTGGCATATACTTTGAAATGT	0.438													7	24					0	0	0.000274275	0	0
IL2	3558	broad.mit.edu	37	4	123377467	123377467	+	Missense_Mutation	SNP	C	T	T	rs146566026	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:123377467C>T	uc003ier.2	-	1	184	c.129G>A	c.(127-129)ATG>ATA	p.M43I		NM_000586	NP_000577	P60568	IL2_HUMAN	interleukin 2 precursor	43					anti-apoptosis|cell adhesion|cell-cell signaling|immune response|natural killer cell activation|negative regulation of B cell apoptosis|positive regulation of activated T cell proliferation|positive regulation of B cell proliferation|positive regulation of cell growth|positive regulation of interleukin-17 production|positive regulation of tyrosine phosphorylation of Stat5 protein|T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-2 receptor binding|kinase activator activity			skin(1)	1				LUSC - Lung squamous cell carcinoma(721;0.185)		CATTCAAAATCATCTGTAAAT	0.318			T	TNFRSF17	intestinal T-cell lymphoma								6	18					0	0	0.00116845	0	0
FAT4	79633	broad.mit.edu	37	4	126328071	126328071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:126328071G>A	uc003ifj.3	+	3	5344	c.5344G>A	c.(5344-5346)GGA>AGA	p.G1782R	FAT4_uc011cgp.1_Missense_Mutation_p.G80R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1782	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TATCATTAGTGGAGCTGATGA	0.448													12	23					0	0	0.00136819	0	0
FAT4	79633	broad.mit.edu	37	4	126336765	126336765	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:126336765C>A	uc003ifj.3	+	5	6647	c.6647C>A	c.(6646-6648)CCT>CAT	p.P2216H	FAT4_uc011cgp.1_Missense_Mutation_p.P514H	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2216	Cadherin 21.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTCGCTAAACCTTTGGATAGA	0.463													20	16					2.70639e-06	7.56214e-06	0.00229938	1	0
FAT4	79633	broad.mit.edu	37	4	126411404	126411405	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:126411404_126411405GG>AA	uc003ifj.3	+	17	13427_13428	c.13427_13428GG>AA	c.(13426-13428)GGG>GAA	p.G4476E	FAT4_uc011cgp.1_Missense_Mutation_p.G2717E|FAT4_uc003ifi.1_Missense_Mutation_p.G1953E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4476	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGTCCTCAGGGGAAGGTGTGCA	0.614													7	25					0	0	6.4e-05	0	0
INTU	27152	broad.mit.edu	37	4	128628090	128628090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:128628090C>T	uc003ifk.1	+	12	2307	c.2237C>T	c.(2236-2238)TCT>TTT	p.S746F	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	746										ovary(1)	1						TCTCAGGGCTCTGATGGTTTA	0.453													14	54					0	0	0.000422831	0	0
PCDH18	54510	broad.mit.edu	37	4	138451229	138451229	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:138451229G>A	uc003ihe.3	-	1	2401	c.2014C>T	c.(2014-2016)CTG>TTG	p.L672L	PCDH18_uc003ihf.3_Silent_p.L665L|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.L452L|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	672	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ATGCACTTCAGAAGGACTTTG	0.428													19	57					0	0	0.00188189	0	0
PCDH18	54510	broad.mit.edu	37	4	138453061	138453061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:138453061G>A	uc003ihe.3	-	1	569	c.182C>T	c.(181-183)CCT>CTT	p.P61L	PCDH18_uc003ihf.3_Missense_Mutation_p.P54L|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	61	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AACAGTAGAAGGATTAGGAAG	0.413													7	22					0	0	0.00198382	0	0
UCP1	7350	broad.mit.edu	37	4	141483440	141483440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:141483440C>T	uc011chj.1	-	5	792	c.716G>A	c.(715-717)AGA>AAA	p.R239K	UCP1_uc011chk.1_Missense_Mutation_p.R238K	NM_021833	NP_068605	P25874	UCP1_HUMAN	uncoupling protein 1	239	Solcar 3.				brown fat cell differentiation|cellular lipid metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	all_hematologic(180;0.162)					ATTAATAAATCTGGTTTTTAC	0.468													10	37					0	0	0.000442599	0	0
UCP1	7350	broad.mit.edu	37	4	141483493	141483493	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:141483493G>A	uc011chj.1	-	5	739	c.663C>T	c.(661-663)ATC>ATT	p.I221I	UCP1_uc011chk.1_Silent_p.I220I	NM_021833	NP_068605	P25874	UCP1_HUMAN	uncoupling protein 1	221	Helical; Name=5; (Potential).|Solcar 3.				brown fat cell differentiation|cellular lipid metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	all_hematologic(180;0.162)					AAAATCCAGCGATAAGAGCCG	0.458													7	15					0	0	0.00198382	0	0
TBC1D9	23158	broad.mit.edu	37	4	141592033	141592033	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:141592033G>A	uc010ioj.2	-	7	1379	c.1107C>T	c.(1105-1107)CCC>CCT	p.P369P		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	369						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TGATGGATAAGGGACTGGGGA	0.443													52	48					0	0	0.00361006	0	0
SMAD1	4086	broad.mit.edu	37	4	146467983	146467983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:146467983C>T	uc003ikc.2	+	5	1320	c.904C>T	c.(904-906)CCT>TCT	p.P302S	SMAD1_uc003ikd.2_Missense_Mutation_p.P302S|SMAD1_uc010iov.2_Missense_Mutation_p.P302S|SMAD1_uc011cic.1_Missense_Mutation_p.P263S	NM_005900	NP_005891	Q15797	SMAD1_HUMAN	Sma- and Mad-related protein 1	302	MH2.				BMP signaling pathway|embryonic pattern specification|primary miRNA processing|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|nuclear inner membrane	co-SMAD binding|I-SMAD binding|identical protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity			ovary(1)	1	all_hematologic(180;0.151)					TTTCACTGATCCTTCCAACAA	0.463													15	53					0	0	0.00316338	0	0
ZNF827	152485	broad.mit.edu	37	4	146824009	146824009	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:146824009G>A	uc003ikn.2	-	2	450	c.402C>T	c.(400-402)CTC>CTT	p.L134L	ZNF827_uc003ikm.2_Silent_p.L134L|ZNF827_uc010iox.2_Intron	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	134					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CTGCAGCATCGAGTTTGAGGG	0.597													7	21					0	0	0.00307968	0	0
NR3C2	4306	broad.mit.edu	37	4	149356895	149356895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:149356895G>A	uc003ilj.3	-	2	1452	c.1118C>T	c.(1117-1119)CCT>CTT	p.P373L	NR3C2_uc003ilk.3_Missense_Mutation_p.P373L|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	373	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	CTTAGGAAAAGGGACCTCTTG	0.498													22	19					0	0	0.000720815	0	0
DCHS2	54798	broad.mit.edu	37	4	155242155	155242155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:155242155C>T	uc003inw.2	-	14	3031	c.3031G>A	c.(3031-3033)GAA>AAA	p.E1011K		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1011	Cadherin 8.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TAATCAAGTTCCTTAGAAAGA	0.363													20	46					0	0	0.00229938	0	0
FGG	2266	broad.mit.edu	37	4	155526062	155526062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:155526062C>T	uc003ioj.2	-	9	1427	c.1286G>A	c.(1285-1287)GGG>GAG	p.G429E	FGG_uc003iog.2_Missense_Mutation_p.G429E|FGG_uc003ioh.2_Missense_Mutation_p.G437E|FGG_uc010ipx.2_Missense_Mutation_p.G257E|FGG_uc010ipy.2_Missense_Mutation_p.G140E|FGG_uc003ioi.2_Missense_Mutation_p.G140E|FGG_uc003iok.2_Missense_Mutation_p.G437E	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	429	Platelet aggregation and Staphylococcus clumping.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	TTTGGCTCCCCCCAGGTGGTG	0.453													33	34					0	0	0.00375469	0	0
GUCY1B3	2983	broad.mit.edu	37	4	156723706	156723706	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:156723706C>A	uc003ipc.2	+	10	1555	c.1388C>A	c.(1387-1389)TCC>TAC	p.S463Y	GUCY1B3_uc011cio.1_Missense_Mutation_p.S485Y|GUCY1B3_uc011cip.1_Missense_Mutation_p.S443Y|GUCY1B3_uc003ipd.2_Missense_Mutation_p.S391Y|GUCY1B3_uc010iqf.2_Missense_Mutation_p.S430Y|GUCY1B3_uc010iqg.2_Missense_Mutation_p.S434Y|GUCY1B3_uc011ciq.1_Missense_Mutation_p.S391Y	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	463	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		CTGACTGATTCCCGGAAAAAC	0.488													4	9					0.000602214	0.00167649	0.000602214	1	0
PDGFC	56034	broad.mit.edu	37	4	157771520	157771521	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:157771520_157771521CC>TT	uc003iph.1	-	2	657_658	c.166_167GG>AA	c.(166-168)GGA>AAA	p.G56K	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_Intron|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	56	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		GTGAATACTTCCATTAGTAGAC	0.351													9	23					0	0	6.4e-05	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160253705	160253705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:160253705C>T	uc003iqg.3	+	11	1818	c.1508C>T	c.(1507-1509)CCA>CTA	p.P503L		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	503					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		TACTCCATTCCAGATCTTGCT	0.393													9	32					0	0	0.000442599	0	0
ANP32C	23520	broad.mit.edu	37	4	165118554	165118554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:165118554G>A	uc011cjk.1	-	1	310	c.310C>T	c.(310-312)CCA>TCA	p.P104S	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	104	LRR 3.										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		TGTTTCAGTGGCTCTATTGTG	0.438													32	51					0	0	0.000953801	0	0
TRIM60	166655	broad.mit.edu	37	4	165961962	165961962	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:165961962G>A	uc003iqy.1	+	3	908	c.738G>A	c.(736-738)CTG>CTA	p.L246L	TRIM60_uc010iqx.1_Silent_p.L246L	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	246						intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		AGTCAAACCTGGAATTACTGA	0.363													11	30					0	0	0.000978159	0	0
DDX60L	91351	broad.mit.edu	37	4	169305892	169305892	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:169305892G>A	uc003irq.3	-	30	4208	c.3987C>T	c.(3985-3987)CCC>CCT	p.P1329P		NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1329	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TTTTTATTTTGGGCAATGGGA	0.473													4	4					0	0	0.00024832	0	0
DDX60L	91351	broad.mit.edu	37	4	169374299	169374299	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:169374299C>T	uc003irq.3	-	8	1193	c.972G>A	c.(970-972)AGG>AGA	p.R324R	DDX60L_uc003irr.1_Silent_p.R324R|DDX60L_uc003irs.1_Silent_p.R51R	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	324							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		AATCACTGTTCCTAATCCAAG	0.368													6	32					0	0	0.000274275	0	0
CLCN3	1182	broad.mit.edu	37	4	170618774	170618774	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:170618774C>T	uc003isi.2	+	9	1961	c.1452C>T	c.(1450-1452)GTC>GTT	p.V484V	CLCN3_uc003ish.2_Silent_p.V484V|CLCN3_uc011cjz.1_Silent_p.V467V|CLCN3_uc011cka.1_Silent_p.V457V|CLCN3_uc003isj.1_Silent_p.V457V	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	484					endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		GTAAAATTGTCGATGACATTC	0.403													17	59					0	0	0.000958276	0	0
AADAT	51166	broad.mit.edu	37	4	171009679	171009679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:171009679G>A	uc003isr.2	-	2	446	c.104C>T	c.(103-105)TCC>TTC	p.S35F	AADAT_uc003iss.2_Missense_Mutation_p.S35F|AADAT_uc003ist.2_Missense_Mutation_p.S39F	NM_016228	NP_057312	Q8N5Z0	AADAT_HUMAN	kynurenine aminotransferase II	35					2-oxoglutarate metabolic process|biosynthetic process|glutamate metabolic process|lysine catabolic process	mitochondrial matrix	2-aminoadipate transaminase activity|kynurenine-oxoglutarate transaminase activity|protein homodimerization activity				0		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0355)|LUSC - Lung squamous cell carcinoma(193;0.118)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	ACCAGCCAAGGAGATCATCGA	0.388													26	65					0	0	0.00106085	0	0
KIAA1712	80817	broad.mit.edu	37	4	175231094	175231094	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:175231094T>C	uc003itr.2	+	8	1186	c.772T>C	c.(772-774)TTA>CTA	p.L258L	KIAA1712_uc010iro.2_Silent_p.L258L|KIAA1712_uc003its.2_RNA	NM_001040157	NP_001035247	Q9C0F1	CEP44_HUMAN	HBV PreS1-transactivated protein 3 isoform a	258	Potential.					centrosome|midbody|spindle pole					0		Prostate(90;0.00276)|Melanoma(52;0.0179)|Renal(120;0.0376)|Breast(14;0.0991)|all_hematologic(60;0.124)|all_neural(102;0.196)		all cancers(43;4.06e-18)|Epithelial(43;1.18e-15)|OV - Ovarian serous cystadenocarcinoma(60;4.65e-09)|GBM - Glioblastoma multiforme(59;0.00098)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0949)		AGAGAAAAGGTTAGACTGTTT	0.348													9	31					0	0	0.000978159	0	0
SPATA4	132851	broad.mit.edu	37	4	177113961	177113961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:177113961C>T	uc003iuo.1	-	4	614	c.505G>A	c.(505-507)GAC>AAC	p.D169N		NM_144644	NP_653245	Q8NEY3	SPAT4_HUMAN	spermatogenesis associated 4	169					apoptosis|spermatogenesis						0		Breast(14;0.0011)|Prostate(90;0.0129)|Melanoma(52;0.0133)|Renal(120;0.0376)|all_hematologic(60;0.124)		all cancers(43;2.9e-20)|Epithelial(43;1.99e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.58e-09)|GBM - Glioblastoma multiforme(59;0.000162)|STAD - Stomach adenocarcinoma(60;0.000543)|LUSC - Lung squamous cell carcinoma(193;0.096)		TAGCTATAGTCCGTGAAATTC	0.328													13	24					0	0	0.00244969	0	0
ASB5	140458	broad.mit.edu	37	4	177146477	177146477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:177146477C>T	uc003iuq.1	-	2	228	c.212G>A	c.(211-213)CGA>CAA	p.R71Q	ASB5_uc003iup.1_Missense_Mutation_p.R18Q	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	71	ANK 1.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		TAGTGGTGATCGATCTGCCCA	0.333													13	45					0	0	0.00244969	0	0
C4orf41	60684	broad.mit.edu	37	4	184598669	184598669	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:184598669C>T	uc003ivx.2	+	8	969	c.793C>T	c.(793-795)CTG>TTG	p.L265L	C4orf41_uc003ivw.2_Silent_p.L265L|C4orf41_uc010isc.2_Intron	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	265											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		AACTAATATTCTGGAAATTAA	0.294													89	81					0	0	0.00361006	0	0
ENPP6	133121	broad.mit.edu	37	4	185012430	185012430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:185012430G>A	uc003iwc.2	-	8	1365	c.1223C>T	c.(1222-1224)TCC>TTC	p.S408F		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	408	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		CATCACCCTGGACCAGGATCC	0.582													7	64					0	0	0.00198382	0	0
KLKB1	3818	broad.mit.edu	37	4	187173201	187173201	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:187173201T>C	uc003iyy.2	+	11	1246	c.1175T>C	c.(1174-1176)GTT>GCT	p.V392A	KLKB1_uc011clc.1_Missense_Mutation_p.V190A|KLKB1_uc011cld.1_Missense_Mutation_p.V354A	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	392	Peptidase S1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		ACACGCATTGTTGGAGGAACA	0.498													11	49					0	0	0.00185496	0	0
KLKB1	3818	broad.mit.edu	37	4	187175746	187175746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:187175746C>T	uc003iyy.2	+	12	1389	c.1318C>T	c.(1318-1320)CCC>TCC	p.P440S	KLKB1_uc011clc.1_Missense_Mutation_p.P238S|KLKB1_uc011cld.1_Missense_Mutation_p.P402S	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	440	Peptidase S1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		TCCTAGGCTTCCCCTGCAGGA	0.383													39	46					0	0	0.00285205	0	0
FAT1	2195	broad.mit.edu	37	4	187628754	187628754	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:187628754T>A	uc003izf.2	-	2	2416	c.2228A>T	c.(2227-2229)GAC>GTC	p.D743V	FAT1_uc010iso.1_Missense_Mutation_p.D743V	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	743	Extracellular (Potential).|Cadherin 6.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AGTGTCAAGGTCAGTGGAGTT	0.423										HNSCC(5;0.00058)			11	27					0	0	0.000673444	0	0
ZFP42	132625	broad.mit.edu	37	4	188924305	188924305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:188924305C>T	uc003izg.1	+	3	589	c.344C>T	c.(343-345)TCC>TTC	p.S115F	ZFP42_uc003izh.1_Missense_Mutation_p.S115F|ZFP42_uc003izi.1_Missense_Mutation_p.S115F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	115					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GAAGCAAGCTCCCTTGAATGT	0.398													14	49					0	0	0.00244969	0	0
TRIML2	205860	broad.mit.edu	37	4	189022258	189022258	+	Silent	SNP	C	T	T	rs141580546	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:189022258C>T	uc003izl.2	-	3	318	c.282G>A	c.(280-282)GCG>GCA	p.A94A	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Silent_p.A144A|TRIML2_uc011clf.1_Silent_p.A144A	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	94	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CAAGCTTGATCGCTTGATTCA	0.433													17	16					0	0	0.00074312	0	0
TRIML2	205860	broad.mit.edu	37	4	189026058	189026058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:189026058G>A	uc003izl.2	-	2	104	c.68C>T	c.(67-69)TCG>TTG	p.S23L	TRIML2_uc011cle.1_Missense_Mutation_p.S73L|TRIML2_uc011clf.1_Missense_Mutation_p.S73L	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	23	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TTTCTCCCTCGATGTGTTCAA	0.408													28	79					0	0	0.00178596	0	0
TRIML1	339976	broad.mit.edu	37	4	189060821	189060821	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:189060821C>T	uc003izm.1	+	1	224	c.109C>T	c.(109-111)CTG>TTG	p.L37L		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	37	RING-type.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CAGCTTTTGTCTGGTGTGTCT	0.532													9	88					0	0	0.000978159	0	0
TRIML1	339976	broad.mit.edu	37	4	189068223	189068223	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr4:189068223C>T	uc003izm.1	+	6	1219	c.1104C>T	c.(1102-1104)CTC>CTT	p.L368L	TRIML1_uc003izn.1_Silent_p.L92L	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	368	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AGGGGAATCTCCCCAAGCCAC	0.527													13	36					0	0	0.00316338	0	0
TRIP13	9319	broad.mit.edu	37	5	896848	896848	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:896848T>G	uc003jbr.2	+	3	437	c.327T>G	c.(325-327)AGT>AGG	p.S109R	TRIP13_uc010ite.1_Missense_Mutation_p.S109R	NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	109					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			GCCCCAGCAGTGAAAATCTGG	0.478													17	45					0	0	0.00121646	0	0
SLC6A3	6531	broad.mit.edu	37	5	1441563	1441563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:1441563C>T	uc003jck.2	-	3	450	c.329G>A	c.(328-330)GGG>GAG	p.G110E		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	110	Helical; Name=2; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AAGTGGCATCCCAGCAATGAC	0.572													8	26					0	0	0.000442599	0	0
NDUFS6	4726	broad.mit.edu	37	5	1815981	1815981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:1815981C>T	uc003jcy.2	+	4	349	c.326C>T	c.(325-327)ACC>ATC	p.T109I		NM_004553	NP_004544	O75380	NDUS6_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 6,	109					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)	1					NADH(DB00157)	GAAACAAAAACCGGCACATGC	0.448													16	60					0	0	0.000422831	0	0
NSUN2	54888	broad.mit.edu	37	5	6600194	6600194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:6600194G>A	uc003jdu.2	-	19	2214	c.2149C>T	c.(2149-2151)CTC>TTC	p.L717F	NSUN2_uc003jds.2_Missense_Mutation_p.L163F|NSUN2_uc003jdt.2_Missense_Mutation_p.L481F|NSUN2_uc011cmk.1_Missense_Mutation_p.L682F|NSUN2_uc003jdv.2_Missense_Mutation_p.L481F	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	717						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						TCATTTGTGAGGATAACCCCT	0.527													32	30					0	0	0.00111076	0	0
NSUN2	54888	broad.mit.edu	37	5	6620226	6620227	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:6620226_6620227GG>AA	uc003jdu.2	-	7	872_873	c.807_808CC>TT	c.(805-810)GTCCCT>GTTTCT	p.P270S	NSUN2_uc003jdt.2_Missense_Mutation_p.P34S|NSUN2_uc011cmk.1_Missense_Mutation_p.P235S|NSUN2_uc003jdv.2_Missense_Mutation_p.P34S	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	270						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						TACCTGCAAGGGACATCACATA	0.406													7	67					0	0	6.4e-05	0	0
MARCH6	10299	broad.mit.edu	37	5	10381949	10381949	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:10381949A>G	uc003jet.1	+	4	411	c.228A>G	c.(226-228)CAA>CAG	p.Q76Q	MARCH6_uc011cmu.1_Intron|MARCH6_uc003jeu.1_5'UTR|MARCH6_uc011cmv.1_Intron	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	76	Cytoplasmic (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TTCCAATTCAAGACATATTTG	0.363													34	193					0	0	0.00283554	0	0
MARCH6	10299	broad.mit.edu	37	5	10426588	10426588	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:10426588C>T	uc003jet.1	+	24	2643	c.2460C>T	c.(2458-2460)TCC>TCT	p.S820S	MARCH6_uc011cmu.1_Silent_p.S772S|MARCH6_uc003jeu.1_Silent_p.S518S|MARCH6_uc011cmv.1_Silent_p.S715S	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	820	Helical; (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TGTTGCTTTCCCTGTGTGTAC	0.433													26	71					0	0	0.000878237	0	0
CTNND2	1501	broad.mit.edu	37	5	11111000	11111000	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:11111000C>T	uc003jfa.1	-	14	2578	c.2433G>A	c.(2431-2433)AAG>AAA	p.K811K	CTNND2_uc010itt.2_Silent_p.K720K|CTNND2_uc011cmy.1_Silent_p.K474K|CTNND2_uc011cmz.1_Silent_p.K378K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.K378K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	811	Poly-Lys.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TCTTCTTCTTCTTGCCCCAGC	0.512													38	196					0	0	0.00170553	0	0
DNAH5	1767	broad.mit.edu	37	5	13841988	13841988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:13841988G>A	uc003jfd.2	-	33	5339	c.5297C>T	c.(5296-5298)TCC>TTC	p.S1766F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1766	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCTTGAGAGGAAATTGACAG	0.333									Kartagener_syndrome				49	38					0	0	0.00361006	0	0
DNAH5	1767	broad.mit.edu	37	5	13859705	13859705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:13859705C>T	uc003jfd.2	-	30	4848	c.4806G>A	c.(4804-4806)ATG>ATA	p.M1602I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1602	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTGAATGGCATATTGTACC	0.338									Kartagener_syndrome				18	91					0	0	0.00074312	0	0
DNAH5	1767	broad.mit.edu	37	5	13871727	13871727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:13871727C>T	uc003jfd.2	-	23	3586	c.3544G>A	c.(3544-3546)GAA>AAA	p.E1182K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1182	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCATTAATTTCCTGCTCTAGG	0.373									Kartagener_syndrome				5	30					0	0	0.00116845	0	0
DNAH5	1767	broad.mit.edu	37	5	13901506	13901506	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:13901506C>A	uc003jfd.2	-	14	1949	c.1907G>T	c.(1906-1908)AGG>ATG	p.R636M		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	636	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGCTGAATCCTATGGAAGAG	0.512									Kartagener_syndrome				5	23					1.23904e-05	3.45698e-05	0.000602214	1	0
DNAH5	1767	broad.mit.edu	37	5	13911527	13911527	+	Missense_Mutation	SNP	C	T	T	rs141651575		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:13911527C>T	uc003jfd.2	-	12	1654	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	538	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAAAACTCTTCGTAATCTTGG	0.343									Kartagener_syndrome				17	89					0	0	0.00229938	0	0
DNAH5	1767	broad.mit.edu	37	5	13917339	13917339	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:13917339G>A	uc003jfd.2	-	8	1044	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	334	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTGCATCAGTGATTCGAATAT	0.378									Kartagener_syndrome				19	36					0	0	0.00152264	0	0
DNAH5	1767	broad.mit.edu	37	5	13944539	13944539	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:13944539C>T	uc003jfd.2	-	1	51	c.9G>A	c.(7-9)AGG>AGA	p.R3R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCCTCCCAATCCTAAACATTG	0.483									Kartagener_syndrome				5	37					0	0	0.00116845	0	0
TRIO	7204	broad.mit.edu	37	5	14477057	14477057	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:14477057C>T	uc003jff.2	+	41	6144	c.6138C>T	c.(6136-6138)TCC>TCT	p.S2046S	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Silent_p.S1695S	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2046	DH 2.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					AACTAGGATCCCTTTTTGTTA	0.373													15	34					0	0	0.000566183	0	0
FAM105A	54491	broad.mit.edu	37	5	14601330	14601330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:14601330G>A	uc003jfj.2	+	3	346	c.233G>A	c.(232-234)GGA>GAA	p.G78E		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	78										ovary(1)	1	Lung NSC(4;0.00592)					AGGTGGATTGGATATCTGCAG	0.308													9	64					0	0	0.000978159	0	0
ANKH	56172	broad.mit.edu	37	5	14758589	14758589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:14758589C>T	uc003jfm.3	-	3	763	c.432G>A	c.(430-432)ATG>ATA	p.M144I		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	144	Helical; (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						CTCTACTCACCATTGCGTCCA	0.328													5	37					0	0	0.00116845	0	0
CDH18	1016	broad.mit.edu	37	5	19473750	19473750	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:19473750T>A	uc003jgc.2	-	12	2335	c.1958A>T	c.(1957-1959)GAG>GTG	p.E653V	CDH18_uc003jgd.2_Missense_Mutation_p.E653V|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	653	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GACCACGTTCTCCCGTACATC	0.483													23	124					0	0	0.00332997	0	0
PRDM9	56979	broad.mit.edu	37	5	23522427	23522427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:23522427G>A	uc003jgo.2	+	7	705	c.523G>A	c.(523-525)GAG>AAG	p.E175K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	175					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CAGGAAGAAGGAGACTGAAAG	0.428										HNSCC(3;0.000094)			46	71					0	0	0.00361006	0	0
PRDM9	56979	broad.mit.edu	37	5	23522483	23522483	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:23522483G>A	uc003jgo.2	+	7	761	c.579G>A	c.(577-579)GAG>GAA	p.E193E		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	193					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CATACAAAGAGGTCAGCGAGC	0.448										HNSCC(3;0.000094)			22	123					0	0	0.000720815	0	0
PRDM9	56979	broad.mit.edu	37	5	23526565	23526565	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:23526565C>T	uc003jgo.2	+	11	1550	c.1368C>T	c.(1366-1368)ATC>ATT	p.I456I		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	456					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GTCAAGAGATCAAAGAAAGGT	0.483										HNSCC(3;0.000094)			12	10					0	0	0.000978159	0	0
PRDM9	56979	broad.mit.edu	37	5	23527765	23527765	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:23527765G>A	uc003jgo.2	+	11	2750	c.2568G>A	c.(2566-2568)GGG>GGA	p.G856G		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	856					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACACACAGGGGAGAAGCCCT	0.587										HNSCC(3;0.000094)			8	31					0	0	0.000442599	0	0
CDH9	1007	broad.mit.edu	37	5	26885885	26885885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:26885885C>T	uc003jgs.1	-	11	1889	c.1720G>A	c.(1720-1722)GAT>AAT	p.D574N	CDH9_uc011cnv.1_Missense_Mutation_p.D167N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	574	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ATTGGATAATCGTTGTCAAAG	0.453													7	23					0	0	0.00307968	0	0
PDZD2	23037	broad.mit.edu	37	5	32090179	32090179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:32090179G>A	uc003jhl.2	+	20	7013	c.6625G>A	c.(6625-6627)GAG>AAG	p.E2209K	PDZD2_uc003jhm.2_Missense_Mutation_p.E2209K	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2209					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CCCCTCGGGGGAGGACCATCT	0.587													27	86					0	0	0.00106085	0	0
ZFR	51663	broad.mit.edu	37	5	32415291	32415291	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:32415291G>A	uc003jhr.1	-	5	647	c.567C>T	c.(565-567)GCC>GCT	p.A189A	ZFR_uc010iun.1_Silent_p.A189A	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	189	Ala-rich.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		CTGCTTTGGGGGCTGAAGTAG	0.438													34	130					0	0	0.00128727	0	0
PRLR	5618	broad.mit.edu	37	5	35065495	35065495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:35065495G>A	uc003jjm.2	-	10	2095	c.1565C>T	c.(1564-1566)TCA>TTA	p.S522L	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.S421L	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	522	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TGGTAGCAATGATAATGCACC	0.517													14	66					0	0	0.00316338	0	0
PRLR	5618	broad.mit.edu	37	5	35072711	35072711	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:35072711A>G	uc003jjm.2	-	6	1039	c.509T>C	c.(508-510)ATT>ACT	p.I170T	PRLR_uc003jjg.1_Missense_Mutation_p.I170T|PRLR_uc003jjh.1_Missense_Mutation_p.I170T|PRLR_uc003jji.1_Missense_Mutation_p.I99T|PRLR_uc003jjj.1_Missense_Mutation_p.I170T|PRLR_uc003jjk.1_Missense_Mutation_p.I99T|PRLR_uc003jjl.3_Missense_Mutation_p.I69T|PRLR_uc010iuw.1_Missense_Mutation_p.I99T	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	170	Fibronectin type-III 2.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TTTTAATCGAATTTCATACAG	0.443													11	74					0	0	0.00185496	0	0
SPEF2	79925	broad.mit.edu	37	5	35659285	35659285	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:35659285C>T	uc003jjo.2	+	8	1254	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	SPEF2_uc003jjn.1_Silent_p.F381F|SPEF2_uc003jjq.3_Silent_p.F381F	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	381	Potential.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTAAAGATTTCCAGGATGCTC	0.383													10	29					0	0	0.00316338	0	0
SPEF2	79925	broad.mit.edu	37	5	35709087	35709087	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:35709087A>T	uc003jjo.2	+	19	2814	c.2703A>T	c.(2701-2703)AAA>AAT	p.K901N	SPEF2_uc003jjq.3_Missense_Mutation_p.K896N|SPEF2_uc003jjp.1_Missense_Mutation_p.K387N	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	901	Potential.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CTGAGAAAAAAGCAGCAGCTT	0.413													17	33					0	0	0.000422831	0	0
IL7R	3575	broad.mit.edu	37	5	35861078	35861078	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:35861078G>A	uc003jjs.2	+	2	296	c.207G>A	c.(205-207)CTG>CTA	p.L69L	IL7R_uc011coo.1_Silent_p.L69L|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	69	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TCACCAATCTGGAATTTGAAA	0.408													18	50					0	0	0.00121646	0	0
IL7R	3575	broad.mit.edu	37	5	35873724	35873724	+	Missense_Mutation	SNP	G	A	A	rs148165103		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:35873724G>A	uc003jjs.2	+	5	769	c.680G>A	c.(679-681)AGA>AAA	p.R227K	IL7R_uc011coo.1_Missense_Mutation_p.R227K|IL7R_uc011cop.1_Intron	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	227	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TATTACTTCAGAACTCCAGAG	0.428													21	36					0	0	0.00278032	0	0
IL7R	3575	broad.mit.edu	37	5	35876369	35876369	+	Silent	SNP	C	T	T	rs139678300		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:35876369C>T	uc003jjs.2	+	8	1250	c.1161C>T	c.(1159-1161)TCC>TCT	p.S387S	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	387	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			CTTCCAGGTCCCTAGACTGCA	0.537													4	18					0	0	0.00024832	0	0
CAPSL	133690	broad.mit.edu	37	5	35904680	35904680	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:35904680G>A	uc003jjt.1	-	5	689	c.594C>T	c.(592-594)TTC>TTT	p.F198F	CAPSL_uc003jju.1_Silent_p.F198F	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	198						cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			TCATGATGATGAAGTACACAT	0.478													29	70					0	0	0.000814825	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049010	36049010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:36049010G>A	uc003jjz.1	-	4	917	c.824C>T	c.(823-825)CCT>CTT	p.P275L	UGT3A2_uc011cos.1_Missense_Mutation_p.P241L|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	275	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGGTTTAATAGGTTTTTCCAT	0.463													7	31					0	0	0.000673444	0	0
C5orf33	133686	broad.mit.edu	37	5	36195254	36195254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:36195254C>T	uc003jkf.3	-	12	1321	c.1321G>A	c.(1321-1323)GAA>AAA	p.E441K	C5orf33_uc003jke.3_RNA|C5orf33_uc010iux.2_Missense_Mutation_p.E246K|C5orf33_uc003jkg.3_Missense_Mutation_p.E278K|C5orf33_uc011cov.1_Missense_Mutation_p.E300K	NM_001085411	NP_001078880	Q4G0N4	NAKD1_HUMAN	hypothetical protein LOC133686 isoform 1	441							NAD+ kinase activity				0	all_lung(31;5.63e-05)		Epithelial(62;0.0254)|all cancers(62;0.0805)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CTTCACTGTTCAAGAAGCACA	0.363													17	25					0	0	0.000958276	0	0
RANBP3L	202151	broad.mit.edu	37	5	36257608	36257608	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:36257608C>T	uc003jkh.2	-	9	1213	c.720G>A	c.(718-720)AAG>AAA	p.K240K	RANBP3L_uc011cow.1_Silent_p.K265K	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	240					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			ATGGTTTTTCCTTGGCATATG	0.303													11	89					0	0	0.00244969	0	0
WDR70	55100	broad.mit.edu	37	5	37396570	37396570	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:37396570A>C	uc003jkv.2	+	5	448	c.390A>C	c.(388-390)CCA>CCC	p.P130P	WDR70_uc010iva.1_Silent_p.P130P	NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	130										ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TAGGAAAACCAGTTAATTTTA	0.318													24	47					0	0	0.00395357	0	0
GDNF	2668	broad.mit.edu	37	5	37816136	37816136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:37816136C>T	uc011cpi.1	-	3	453	c.253G>A	c.(253-255)GTG>ATG	p.V85M	GDNF_uc011cpc.1_Intron|GDNF_uc011cpd.1_Missense_Mutation_p.V33M|GDNF_uc011cpe.1_Missense_Mutation_p.V59M|GDNF_uc011cpf.1_Missense_Mutation_p.V59M|GDNF_uc011cpg.1_Missense_Mutation_p.V102M|GDNF_uc011cph.1_Missense_Mutation_p.V76M	NM_000514	NP_000505	P39905	GDNF_HUMAN	glial cell derived neurotrophic factor isoform 1	85					adult locomotory behavior|anti-apoptosis|axon guidance|branching involved in ureteric bud morphogenesis|enteric nervous system development|mRNA stabilization|negative regulation of neuron apoptosis|neural crest cell migration|peristalsis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of dopamine secretion|positive regulation of monooxygenase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of ureteric bud formation|postganglionic parasympathetic nervous system development|regulation of dopamine uptake|signal transduction|sympathetic nervous system development	extracellular region	growth factor activity|protein homodimerization activity				0	all_lung(31;0.00118)					CTAGGAAGCACTGCCATTTGT	0.478													31	76					0	0	0.00375469	0	0
EGFLAM	133584	broad.mit.edu	37	5	38451442	38451442	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:38451442T>C	uc003jlc.1	+	20	2917	c.2593T>C	c.(2593-2595)TTC>CTC	p.F865L	EGFLAM_uc003jlb.1_Missense_Mutation_p.F857L|EGFLAM_uc003jle.1_Missense_Mutation_p.F623L|EGFLAM_uc003jlf.1_Missense_Mutation_p.F223L|EGFLAM_uc003jlg.1_5'UTR	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	865	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ATCAAATGTGTTCATGAGGTT	0.473													16	85					0	0	0.000958276	0	0
LIFR	3977	broad.mit.edu	37	5	38490359	38490359	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:38490359G>A	uc010ive.1	-	15	2432	c.2100C>T	c.(2098-2100)TTC>TTT	p.F700F	LIFR_uc003jli.2_Silent_p.F700F	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	700	Fibronectin type-III 5.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					ATCCATACAGGAAAAAATTAT	0.289			T	PLAG1	salivary adenoma								22	155					0	0	0.00278032	0	0
FYB	2533	broad.mit.edu	37	5	39202605	39202605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:39202605G>A	uc003jls.2	-	1	525	c.458C>T	c.(457-459)CCG>CTG	p.P153L	FYB_uc003jlt.2_Missense_Mutation_p.P153L|FYB_uc003jlu.2_Missense_Mutation_p.P153L|FYB_uc011cpl.1_Missense_Mutation_p.P163L	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	153					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			CCCAGATTTCGGGCCTAGTGG	0.453													17	70					0	0	0.00074312	0	0
C9	735	broad.mit.edu	37	5	39311367	39311367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:39311367G>A	uc003jlv.3	-	7	1072	c.983C>T	c.(982-984)ACT>ATT	p.T328I		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	328	Beta stranded; (Potential).|MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			TTCATAGGTAGTTGGCAAAGC	0.383													8	46					0	0	0.00307968	0	0
C9	735	broad.mit.edu	37	5	39311419	39311419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:39311419G>A	uc003jlv.3	-	7	1020	c.931C>T	c.(931-933)CGC>TGC	p.R311C		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	311	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			ACAACATCGCGATTTCTCATT	0.363													12	29					0	0	0.000978159	0	0
C7	730	broad.mit.edu	37	5	40947796	40947796	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:40947796G>A	uc003jmh.2	+	8	945	c.831G>A	c.(829-831)TGG>TGA	p.W277*	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	277	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				AGCCATTCTGGAAGGAGCTTT	0.453													12	20					0	0	0.00244969	0	0
C7	730	broad.mit.edu	37	5	40981494	40981494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:40981494C>T	uc003jmh.2	+	18	2465	c.2351C>T	c.(2350-2352)GCT>GTT	p.A784V		NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	784	Complement control factor I module 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ACTTTTCCAGCTGAGAGCAGC	0.478													7	4					0	0	0.000274275	0	0
HEATR7B2	133558	broad.mit.edu	37	5	40999860	40999860	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:40999860G>A	uc003jmj.3	-	40	4994	c.4504C>T	c.(4504-4506)CTG>TTG	p.L1502L	HEATR7B2_uc003jmi.3_Silent_p.L1057L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1502							binding			ovary(6)|central_nervous_system(2)	8						AGGATCCACAGAATTTCCTGG	0.473													18	30					0	0	0.00278032	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41055945	41055945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:41055945G>A	uc003jmj.3	-	10	1422	c.932C>T	c.(931-933)CCT>CTT	p.P311L	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	311	HEAT 4.						binding			ovary(6)|central_nervous_system(2)	8						CAGCTCTCCAGGATTGGAATG	0.398													30	41					0	0	0.001512	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41061692	41061693	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:41061692_41061693GG>AA	uc003jmj.3	-	6	1084_1085	c.594_595CC>TT	c.(592-597)GCCCCT>GCTTCT	p.P199S		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	199							binding			ovary(6)|central_nervous_system(2)	8						GAGGCCAAAGGGGCCCACTTCT	0.485													14	133					0	0	6.4e-05	0	0
C6	729	broad.mit.edu	37	5	41203290	41203290	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:41203290G>A	uc003jmk.2	-	2	253	c.43C>T	c.(43-45)CTG>TTG	p.L15L	C6_uc003jml.1_Silent_p.L15L	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	15					complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTGTTGATCAGAGCATTCAGC	0.473													15	72					0	0	0.00244969	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382367	41382367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:41382367G>A	uc003jmm.1	-	2	475	c.373C>T	c.(373-375)CTT>TTT	p.L125F		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	125	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						ATCTCCTCAAGGCCTTCATTG	0.413													16	21					0	0	0.00074312	0	0
GHR	2690	broad.mit.edu	37	5	42719193	42719193	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:42719193C>T	uc003jmt.2	+	10	1627	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	GHR_uc011cpq.1_Silent_p.F341F	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	528	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AAGAAAACTTCCTTATGGACA	0.498													8	30					0	0	0.000673444	0	0
ITGA1	3672	broad.mit.edu	37	5	52221138	52221138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:52221138G>A	uc003jou.2	+	19	2486	c.2434G>A	c.(2434-2436)GAA>AAA	p.E812K	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.E343K	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	812	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				TGGAAATAAGGAAAAATGTAT	0.398													10	56					0	0	0.00185496	0	0
CDC20B	166979	broad.mit.edu	37	5	54423127	54423127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:54423127G>A	uc003jpo.1	-	8	1122	c.947C>T	c.(946-948)TCA>TTA	p.S316L	CDC20B_uc003jpn.1_Missense_Mutation_p.S316L|CDC20B_uc010ivu.1_Missense_Mutation_p.S316L|CDC20B_uc010ivv.1_Missense_Mutation_p.S316L	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	316	WD 3.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			CCCAACTACTGACAAATGACC	0.408													25	60					0	0	0.00178596	0	0
CDC20B	166979	broad.mit.edu	37	5	54429251	54429251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:54429251C>T	uc003jpo.1	-	6	861	c.686G>A	c.(685-687)CGA>CAA	p.R229Q	CDC20B_uc003jpn.1_Missense_Mutation_p.R229Q|CDC20B_uc010ivu.1_Missense_Mutation_p.R229Q|CDC20B_uc010ivv.1_Missense_Mutation_p.R229Q	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	229	WD 1.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			GTAGTCATTTCGAAGACCAGT	0.343													14	55					0	0	0.00185496	0	0
SLC38A9	153129	broad.mit.edu	37	5	54923757	54923757	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:54923757G>A	uc003jqf.2	-	15	1683	c.1482C>T	c.(1480-1482)ATC>ATT	p.I494I	SLC38A9_uc003jqd.2_Silent_p.I431I|SLC38A9_uc010ivx.2_Silent_p.I431I|SLC38A9_uc003jqe.2_RNA|SLC38A9_uc010ivy.2_Silent_p.I365I	NM_173514	NP_775785	Q8NBW4	S38A9_HUMAN	solute carrier family 38, member 9	494	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				AACAGGCCATGATCACTCCAG	0.378													12	43					0	0	0.000422831	0	0
IL31RA	133396	broad.mit.edu	37	5	55212650	55212650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:55212650G>A	uc003jql.2	+	15	2062	c.1997G>A	c.(1996-1998)GGG>GAG	p.G666E	IL31RA_uc003jqm.2_Missense_Mutation_p.G634E|IL31RA_uc003jqn.2_Missense_Mutation_p.G666E|IL31RA_uc003jqo.2_Missense_Mutation_p.G524E	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	634	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				AATTTAGGAGGGGAAAAGAAT	0.473													10	24					0	0	0.000442599	0	0
IL6ST	3572	broad.mit.edu	37	5	55251907	55251907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:55251907G>A	uc003jqq.2	-	10	1468	c.1213C>T	c.(1213-1215)CTT>TTT	p.L405F	IL6ST_uc010iwb.2_Missense_Mutation_p.L405F|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Missense_Mutation_p.L116F|IL6ST_uc003jqr.2_3'UTR	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	405	Extracellular (Potential).|Fibronectin type-III 3.				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				TTGCCAACAAGATTTCTTACT	0.388			O		hepatocellular ca								24	86					0	0	0.000878237	0	0
ANKRD55	79722	broad.mit.edu	37	5	55398338	55398338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:55398338G>A	uc003jqu.2	-	11	1858	c.1706C>T	c.(1705-1707)CCC>CTC	p.P569L	ANKRD55_uc003jqt.2_Missense_Mutation_p.P281L	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	568										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				ATCTGGTAGGGGAGCTAGGTT	0.368													7	44					0	0	0.00307968	0	0
ANKRD55	79722	broad.mit.edu	37	5	55472069	55472069	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:55472069C>T	uc003jqu.2	-	4	374	c.222G>A	c.(220-222)GCG>GCA	p.A74A		NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	73	ANK 2.									skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				TCACTGTGTCCGCTTGACGTC	0.493													26	58					0	0	0.0024448	0	0
ACTBL2	345651	broad.mit.edu	37	5	56778064	56778064	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:56778064C>T	uc003jrm.2	-	1	573	c.471G>A	c.(469-471)GGG>GGA	p.G157G		NM_001017992	NP_001017992	Q562R1	ACTBL_HUMAN	actin, beta-like 2	157						cytoplasm|cytoskeleton	ATP binding			ovary(3)	3		Lung NSC(810;0.000135)|Prostate(74;0.055)|Breast(144;0.0707)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;4.24e-37)		TGACCCCATCCCCAGAATCCA	0.552													7	27					0	0	0.00198382	0	0
DIMT1L	27292	broad.mit.edu	37	5	61689822	61689822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:61689822C>T	uc003jta.2	-	8	752	c.623G>A	c.(622-624)AGG>AAG	p.R208K	DIMT1L_uc011cqq.1_Missense_Mutation_p.R208K	NM_014473	NP_055288	Q9UNQ2	DIMT1_HUMAN	dimethyladenosine transferase	208						nucleolus	RNA binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity			central_nervous_system(1)	1		Lung NSC(810;8.94e-06)|Prostate(74;0.0235)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.122)		AGGTTCTATCCTTACAACACT	0.393													20	68					0	0	0.00395357	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64483978	64483978	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:64483978G>A	uc003jtp.2	-	22	3589	c.2775C>T	c.(2773-2775)CTC>CTT	p.L925L	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	925	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TCCTGATGCAGAGCACTGCCC	0.512													6	49					0	0	0.00198382	0	0
PIK3R1	5295	broad.mit.edu	37	5	67592093	67592093	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:67592093C>T	uc003jva.2	+	15	2469	c.1909C>T	c.(1909-1911)CTG>TTG	p.L637L	PIK3R1_uc003jvb.2_Silent_p.L637L|PIK3R1_uc003jvc.2_Silent_p.L337L|PIK3R1_uc003jvd.2_Silent_p.L367L|PIK3R1_uc003jve.2_Silent_p.L316L	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	637	SH2 2.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	AGCTGAAAACCTGTTGCGAGG	0.473			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			19	72					0	0	0.000958276	0	0
SLC30A5	64924	broad.mit.edu	37	5	68412345	68412345	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:68412345C>T	uc003jvh.2	+	10	1398	c.1197C>T	c.(1195-1197)ATC>ATT	p.I399I	SLC30A5_uc003jvj.2_RNA|SLC30A5_uc003jvk.2_Silent_p.I128I|SLC30A5_uc003jvi.2_Silent_p.I228I	NM_022902	NP_075053	Q8TAD4	ZNT5_HUMAN	solute carrier family 30 (zinc transporter),	399	Cytoplasmic (Potential).				cellular zinc ion homeostasis|cobalt ion transport|regulation of proton transport|response to zinc ion	apical plasma membrane|Golgi apparatus|integral to plasma membrane|membrane fraction|secretory granule membrane	zinc ion binding|zinc ion transmembrane transporter activity			central_nervous_system(1)	1		Lung NSC(167;0.000986)|Prostate(74;0.00809)|Colorectal(97;0.0508)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;1.24e-56)|Epithelial(20;1.12e-52)|all cancers(19;2.63e-48)|Lung(70;0.0177)		CTCAATCGATCCCTAGGTTTA	0.373													36	44					0	0	0.000814825	0	0
CCDC125	202243	broad.mit.edu	37	5	68578698	68578698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:68578698G>A	uc003jvv.1	-	11	1437	c.1394C>T	c.(1393-1395)TCT>TTT	p.S465F	CCDC125_uc003jvx.1_3'UTR|CCDC125_uc003jvy.1_RNA|CCDC125_uc003jvw.2_Missense_Mutation_p.S340F	NM_176816	NP_789786	Q86Z20	CC125_HUMAN	coiled-coil domain containing 125	465						cytoplasm					0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.2e-56)|Epithelial(20;2.31e-52)|all cancers(19;5.85e-48)|Lung(70;0.0183)		ACCCAAAACAGAGAATTCTGA	0.368													20	91					0	0	0.00332997	0	0
BDP1	55814	broad.mit.edu	37	5	70785300	70785300	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:70785300C>G	uc003kbp.1	+	10	1546	c.1283C>G	c.(1282-1284)ACG>AGG	p.T428R	BDP1_uc003kbn.1_Missense_Mutation_p.T428R|BDP1_uc003kbo.2_Missense_Mutation_p.T428R	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	428	Required for phosphorylation by CSNK2A1.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		ATTTCAGACACGGAAAGATCT	0.378													14	52					0	0	0.000566183	0	0
BDP1	55814	broad.mit.edu	37	5	70811919	70811919	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:70811919A>T	uc003kbp.1	+	21	4944	c.4681A>T	c.(4681-4683)ATG>TTG	p.M1561L	BDP1_uc003kbo.2_Missense_Mutation_p.M1561L	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1561					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		CCAGCAAGAAATGAAGGAAAG	0.413													6	7					0	0	0.00116845	0	0
MAP1B	4131	broad.mit.edu	37	5	71493356	71493356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:71493356G>A	uc003kbw.3	+	5	4415	c.4174G>A	c.(4174-4176)GAA>AAA	p.E1392K	MAP1B_uc010iyw.1_Missense_Mutation_p.E1409K|MAP1B_uc010iyx.1_Missense_Mutation_p.E1266K|MAP1B_uc010iyy.1_Missense_Mutation_p.E1266K	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1392						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GTCTCCTATTGAAAAAGTTTT	0.478													10	38					0	0	0.000442599	0	0
MAP1B	4131	broad.mit.edu	37	5	71494963	71494963	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:71494963G>T	uc003kbw.3	+	5	6022	c.5781G>T	c.(5779-5781)GGG>GGT	p.G1927G	MAP1B_uc010iyw.1_Silent_p.G1944G|MAP1B_uc010iyx.1_Silent_p.G1801G|MAP1B_uc010iyy.1_Silent_p.G1801G	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1927	MAP1B 3.					microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		AGACCATTGGGAAAACTACCA	0.463													10	37					3.07112e-06	8.57701e-06	0.000978159	1	0
HMGCR	3156	broad.mit.edu	37	5	74639788	74639789	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:74639788_74639789GG>TT	uc003kdp.2	+	3	432_433	c.276_277GG>TT	c.(274-279)TTGGGT>TTTTGT	p.92_93LG>FC	HMGCR_uc011cst.1_Missense_Mutation_p.112_113LG>FC|HMGCR_uc003kdq.2_Missense_Mutation_p.92_93LG>FC|HMGCR_uc010izn.1_5'Flank	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	92_93	Helical; (Potential).				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	AATATATTTTGGGTAATAGTTT	0.312													15	382					0	0	6.4e-05	0	0
HMGCR	3156	broad.mit.edu	37	5	74647374	74647374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:74647374C>T	uc003kdp.2	+	11	1471	c.1315C>T	c.(1315-1317)CCC>TCC	p.P439S	HMGCR_uc011cst.1_Missense_Mutation_p.P459S|HMGCR_uc003kdq.2_Missense_Mutation_p.P439S	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	439	Linker.				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	AATTGAACTTCCCAGGGAACC	0.423													47	177					0	0	0.00361006	0	0
POLK	51426	broad.mit.edu	37	5	74892785	74892785	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:74892785T>C	uc003kdw.2	+	13	2363	c.2267T>C	c.(2266-2268)GTT>GCT	p.V756A	POLK_uc003kdx.2_RNA|POLK_uc003kdy.2_RNA|POLK_uc010izq.2_Missense_Mutation_p.V558A|POLK_uc003kec.2_Missense_Mutation_p.V666A|POLK_uc010izr.2_RNA|POLK_uc010izs.2_RNA|POLK_uc003ked.2_Intron|POLK_uc003kee.2_Intron|POLK_uc003kef.2_Missense_Mutation_p.V666A	NM_016218	NP_057302	Q9UBT6	POLK_HUMAN	DNA-directed DNA polymerase kappa	756					DNA replication|nucleotide-excision repair, DNA gap filling	nucleus	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|kidney(2)	4		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;2.9e-54)|all cancers(79;1.27e-42)		AACGAAGATGTTGGATCATTT	0.378								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					18	61					0	0	0.00229938	0	0
IQGAP2	10788	broad.mit.edu	37	5	75936908	75936908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:75936908G>A	uc003kek.2	+	17	2296	c.2074G>A	c.(2074-2076)GAG>AAG	p.E692K	IQGAP2_uc010izv.2_Missense_Mutation_p.E245K|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	692	IQ 1.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		TGAACAAGAAGAGAATGTGGT	0.383													4	18					0	0	0.000602214	0	0
IQGAP2	10788	broad.mit.edu	37	5	75970407	75970407	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:75970407C>T	uc003kek.2	+	27	3622	c.3400C>T	c.(3400-3402)CAA>TAA	p.Q1134*	IQGAP2_uc011csv.1_Nonsense_Mutation_p.Q630*|IQGAP2_uc003kel.2_Nonsense_Mutation_p.Q630*|IQGAP2_uc010izw.1_5'UTR	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1134	Ras-GAP.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		AAATTCTGACCAAAGGAGAAA	0.443													13	32					0	0	0.00136819	0	0
S100Z	170591	broad.mit.edu	37	5	76171324	76171325	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:76171324_76171325CG>AT	uc003kep.1	+	3	470_471	c.140_141CG>AT	c.(139-141)TCG>TAT	p.S47Y	S100Z_uc003keq.3_Missense_Mutation_p.S47Y	NM_130772	NP_570128	Q8WXG8	S100Z_HUMAN	S100 calcium binding protein Z	47	EF-hand 1.						calcium ion binding			ovary(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;8.91e-51)|Epithelial(54;5.43e-45)|all cancers(79;1.82e-40)		GAATTCCTCTCGGTGAGTCAGG	0.49													7	176					0	0	6.4e-05	0	0
AGGF1	55109	broad.mit.edu	37	5	76331503	76331504	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:76331503_76331504CC>AA	uc003ket.2	+	3	811_812	c.451_452CC>AA	c.(451-453)CCT>AAT	p.P151N	AGGF1_uc003kes.2_Missense_Mutation_p.P151N|AGGF1_uc003keu.1_RNA	NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	151					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		TGATGCTTACCCTGGTACCGAT	0.342													16	437					0	0	6.4e-05	0	0
PDE8B	8622	broad.mit.edu	37	5	76506853	76506853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:76506853G>A	uc003kfa.2	+	1	148	c.103G>A	c.(103-105)GGC>AGC	p.G35S	PDE8B_uc003kfb.2_Missense_Mutation_p.G35S|PDE8B_uc003kfc.2_Missense_Mutation_p.G35S|PDE8B_uc003kfd.2_Missense_Mutation_p.G35S|PDE8B_uc003kfe.2_Missense_Mutation_p.G35S	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	35					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		CGTGTCGCAGGGCCCGGCGGC	0.756													12	29					0	0	0.000566183	0	0
CMYA5	202333	broad.mit.edu	37	5	79030768	79030768	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:79030768G>A	uc003kgc.2	+	2	6252	c.6180G>A	c.(6178-6180)GTG>GTA	p.V2060V		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2060						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TGGAACAGGTGAAGTCAGAAA	0.463													10	55					0	0	0.00136819	0	0
THBS4	7060	broad.mit.edu	37	5	79354581	79354581	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:79354581C>T	uc003kgh.2	+	6	1023	c.700C>T	c.(700-702)CTG>TTG	p.L234L		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	234					endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		AAACCAACTCCTGGGAGAGGT	0.483													11	43					0	0	0.00185496	0	0
CKMT2	1160	broad.mit.edu	37	5	80553664	80553664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:80553664G>A	uc003khc.3	+	8	1110	c.868G>A	c.(868-870)GGA>AGA	p.G290R	RNU5E_uc011cto.1_Intron|CKMT2_uc010jaq.2_Missense_Mutation_p.G290R|CKMT2_uc003khd.3_Missense_Mutation_p.G290R|uc003khe.1_Intron|uc003khf.1_Intron|uc003khg.1_Intron	NM_001825	NP_001816	P17540	KCRS_HUMAN	sarcomeric mitochondrial creatine kinase	290	Phosphagen kinase C-terminal.				creatine metabolic process|muscle contraction	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;2.29e-44)|Epithelial(54;1.05e-38)|all cancers(79;4.15e-34)	Creatine(DB00148)	ATTCTGTCGTGGACTAAAAGA	0.343													4	28					0	0	0.000602214	0	0
ACOT12	134526	broad.mit.edu	37	5	80626289	80626289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:80626289G>A	uc003khl.3	-	15	1647	c.1592C>T	c.(1591-1593)TCC>TTC	p.S531F	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	531	START.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		TTCTTCAATGGATTTTGACCA	0.363													32	33					0	0	0.0024448	0	0
VCAN	1462	broad.mit.edu	37	5	82834415	82834415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:82834415G>A	uc003kii.3	+	8	5949	c.5593G>A	c.(5593-5595)GAA>AAA	p.E1865K	VCAN_uc003kij.3_Missense_Mutation_p.E878K|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.E529K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1865	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AGCCGAAAAGGAAGTAGCTGG	0.458													20	73					0	0	0.00278032	0	0
GPR98	84059	broad.mit.edu	37	5	89949105	89949105	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:89949105C>T	uc003kju.2	+	20	3810	c.3714C>T	c.(3712-3714)CCC>CCT	p.P1238P	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1238	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATGATGATCCCTTTGGAGTTT	0.428													5	18					0	0	0.000602214	0	0
GPR98	84059	broad.mit.edu	37	5	90002143	90002143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:90002143C>T	uc003kju.2	+	38	8758	c.8662C>T	c.(8662-8664)CCT>TCT	p.P2888S	GPR98_uc003kjt.2_Missense_Mutation_p.P594S|GPR98_uc003kjv.2_Missense_Mutation_p.P488S	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2888	Calx-beta 20.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGATTTTGTCCCTATCATTGG	0.398													7	25					0	0	0.00198382	0	0
NR2F1	7025	broad.mit.edu	37	5	92923755	92923755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:92923755C>T	uc003kkj.2	+	2	2283	c.596C>T	c.(595-597)CCC>CTC	p.P199L		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	199					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		GAGCCCTACCCCACGTCGCGC	0.657													15	25					0	0	0.000566183	0	0
MCTP1	79772	broad.mit.edu	37	5	94230396	94230396	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:94230396G>A	uc003kkx.2	-	11	1797	c.1797C>T	c.(1795-1797)TCC>TCT	p.S599S	MCTP1_uc003kkv.2_Silent_p.S378S|MCTP1_uc003kkw.2_Silent_p.S332S|MCTP1_uc003kkz.2_Silent_p.S260S|MCTP1_uc003kku.2_Silent_p.S115S	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	599					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		GGTCCTCCAGGGAGTTGACAG	0.507													6	17					0	0	0.00198382	0	0
MCTP1	79772	broad.mit.edu	37	5	94230510	94230510	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:94230510C>T	uc003kkx.2	-	11	1683	c.1683G>A	c.(1681-1683)AGG>AGA	p.R561R	MCTP1_uc003kkv.2_Silent_p.R340R|MCTP1_uc003kkw.2_Silent_p.R294R|MCTP1_uc003kkz.2_Silent_p.R222R|MCTP1_uc003kku.2_Silent_p.R77R	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	561					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		GCGTCTGTTCCCTACTGAGGG	0.502													10	26					0	0	0.00136819	0	0
PCSK1	5122	broad.mit.edu	37	5	95757642	95757642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:95757642C>T	uc003kls.1	-	5	768	c.562G>A	c.(562-564)GAT>AAT	p.D188N		NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	188	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCATTAAAATCATAGCTAGCC	0.328													31	123					0	0	0.00283554	0	0
LIX1	167410	broad.mit.edu	37	5	96430739	96430739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:96430739C>T	uc003kmy.3	-	6	802	c.562G>A	c.(562-564)GAA>AAA	p.E188K		NM_153234	NP_694966	Q8N485	LIX1_HUMAN	limb expression 1	188										ovary(1)	1		all_cancers(142;4.28e-07)|all_epithelial(76;1.06e-09)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0318)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.0733)		GAGATGACTTCCTGGGGGCCA	0.498													5	14					0	0	0.000602214	0	0
RIOK2	55781	broad.mit.edu	37	5	96512891	96512891	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:96512891T>C	uc003kmz.2	-	4	537	c.427A>G	c.(427-429)AAA>GAA	p.K143E	RIOK2_uc003kna.3_Missense_Mutation_p.K143E	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	143							ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		TGCCTATGTTTATGATAATCG	0.338													24	110					0	0	0.00209593	0	0
CHD1	1105	broad.mit.edu	37	5	98212152	98212152	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:98212152C>T	uc003knf.2	-	23	3496	c.3348G>A	c.(3346-3348)CGG>CGA	p.R1116R	CHD1_uc010jbn.2_5'Flank	NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	1116					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	GAGGAATAGTCCGTGGTCTTC	0.428													37	129					0	0	0.0025221	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101816075	101816075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:101816075G>A	uc003knn.2	-	2	594	c.422C>T	c.(421-423)ACC>ATC	p.T141I	SLCO6A1_uc003kno.2_Missense_Mutation_p.T141I|SLCO6A1_uc003knp.2_Missense_Mutation_p.T141I|SLCO6A1_uc003knq.2_Missense_Mutation_p.T141I	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	141	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CTTCTCAATGGTTTTCAGTTG	0.338													14	48					0	0	0.00185496	0	0
PAM	5066	broad.mit.edu	37	5	102343270	102343270	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:102343270C>T	uc003knw.2	+	19	2497	c.2124C>T	c.(2122-2124)ATC>ATT	p.I708I	PAM_uc003kns.2_Silent_p.I601I|PAM_uc003knt.2_Silent_p.I708I|PAM_uc003knu.2_Silent_p.I708I|PAM_uc003knv.2_Silent_p.I708I|PAM_uc011cuz.1_Silent_p.I611I|PAM_uc003knz.2_5'UTR	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	708	Peptidyl-alpha-hydroxyglycine alpha- amidating lyase (By similarity).|NHL 4.|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	ATGGTCGGATCCAGTGTTTTA	0.428													18	39					0	0	0.000958276	0	0
CAMK4	814	broad.mit.edu	37	5	110820045	110820045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:110820045G>A	uc011cvj.1	+	12	1402	c.1303G>A	c.(1303-1305)GGC>AGC	p.G435S	CAMK4_uc003kpf.2_Missense_Mutation_p.G435S|CAMK4_uc010jbv.2_Missense_Mutation_p.G238S|CAMK4_uc003kpg.2_Missense_Mutation_p.G126S	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	435					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		ACTAGAGGAGGGCCTAGCAGA	0.527													6	20					0	0	0.00116845	0	0
APC	324	broad.mit.edu	37	5	112157648	112157648	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:112157648T>G	uc010jby.2	+	11	1748	c.1368T>G	c.(1366-1368)CTT>CTG	p.L456L	APC_uc011cvt.1_Silent_p.L438L|APC_uc003kpz.3_Silent_p.L456L|APC_uc003kpy.3_Silent_p.L456L|APC_uc010jbz.2_Silent_p.L173L|APC_uc010jca.2_5'UTR	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	456	Leu-rich.|ARM 1.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity			large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TAATGAAACTTTCATTTGATG	0.323		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			14	38					0	0	0.000422831	0	0
MCC	4163	broad.mit.edu	37	5	112406831	112406831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:112406831C>T	uc003kqj.3	-	10	1845	c.1315G>A	c.(1315-1317)GAA>AAA	p.E439K	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Missense_Mutation_p.E629K|MCC_uc011cwb.1_Missense_Mutation_p.E439K|MCC_uc010jcd.1_Missense_Mutation_p.E401K	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	439					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		GCATTGGATTCGTATTTTCCC	0.507													24	76					0	0	0.00395357	0	0
TRIM36	55521	broad.mit.edu	37	5	114466386	114466386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:114466386G>A	uc003kqs.2	-	9	2244	c.1735C>T	c.(1735-1737)CGT>TGT	p.R579C	TRIM36_uc011cwc.1_Missense_Mutation_p.R567C|TRIM36_uc003kqt.2_Missense_Mutation_p.R424C	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	579	B30.2/SPRY.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		GGTTCCACACGGAAGGCCCAG	0.458													14	53					0	0	0.00316338	0	0
CDO1	1036	broad.mit.edu	37	5	115146919	115146919	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:115146919G>A	uc003krg.2	-	3	653	c.342C>T	c.(340-342)TCC>TCT	p.S114S		NM_001801	NP_001792	Q16878	CDO1_HUMAN	cysteine dioxygenase	114					inflammatory response|sulfur amino acid biosynthetic process|taurine biosynthetic process	cytosol	cysteine dioxygenase activity			large_intestine(1)|skin(1)	2		all_cancers(142;0.0046)|all_epithelial(76;0.000161)|Prostate(80;0.0132)|Ovarian(225;0.0776)		OV - Ovarian serous cystadenocarcinoma(64;7.8e-08)|Epithelial(69;7.32e-07)|all cancers(49;3.24e-05)	L-Cysteine(DB00151)|NADH(DB00157)	CCATCTCATTGGATTTTTTGT	0.403													37	150					0	0	0.00128727	0	0
AQPEP	206338	broad.mit.edu	37	5	115336309	115336309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:115336309C>T	uc003kro.2	+	9	1765	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	534	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						AAGACATTTTCCTACTCAAAC	0.343													12	63					0	0	0.00185496	0	0
DMXL1	1657	broad.mit.edu	37	5	118485177	118485177	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:118485177T>G	uc003ksd.2	+	18	3836	c.3655T>G	c.(3655-3657)TTA>GTA	p.L1219V	DMXL1_uc010jcl.1_Missense_Mutation_p.L1219V	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1219	WD 10.									ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TCCTGTTTCTTTATCGTGGGT	0.443													28	35					0	0	0.00327116	0	0
FAM170A	340069	broad.mit.edu	37	5	118968463	118968463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:118968463G>A	uc003ksm.2	+	2	301	c.91G>A	c.(91-93)GAT>AAT	p.D31N	FAM170A_uc003ksl.2_Missense_Mutation_p.D31N|FAM170A_uc003ksn.2_Missense_Mutation_p.D31N|FAM170A_uc003kso.2_Intron	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	31						intracellular	zinc ion binding			skin(1)	1						GTCCCAAGAGGATGCCCTGCA	0.433													16	15					0	0	0.000958276	0	0
SLC27A6	28965	broad.mit.edu	37	5	128365291	128365291	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:128365291T>G	uc003kuy.2	+	10	1970	c.1574T>G	c.(1573-1575)ATG>AGG	p.M525R	SLC27A6_uc003kuz.2_Missense_Mutation_p.M525R	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	525					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AGAGCAGGAATGGCTTCTATT	0.289													6	34					0	0	0.00198382	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128863523	128863523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:128863523C>T	uc003kvb.1	+	5	1151	c.1151C>T	c.(1150-1152)CCA>CTA	p.P384L	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	384	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		CATGAAACTCCAGTAAGAAAG	0.318													8	56					0	0	0.000442599	0	0
FNIP1	96459	broad.mit.edu	37	5	131006311	131006311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:131006311C>T	uc003kvs.1	-	15	3095	c.2953G>A	c.(2953-2955)GAA>AAA	p.E985K	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Missense_Mutation_p.E957K	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	985					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		GCACTCACTTCGATTAACTTT	0.383													11	45					0	0	0.00136819	0	0
SLC22A4	6583	broad.mit.edu	37	5	131647942	131647942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:131647942G>A	uc003kwq.2	+	2	647	c.482G>A	c.(481-483)GGG>GAG	p.G161E	SLC22A4_uc010jdq.1_RNA|uc003kwr.3_RNA	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	161	Helical; Name=2; (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	TTCGTGTCCGGGCAGCTGTCA	0.577													11	50					0	0	0.000673444	0	0
SLC22A5	6584	broad.mit.edu	37	5	131726450	131726450	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:131726450T>G	uc003kww.3	+	7	1385	c.1121T>G	c.(1120-1122)GTG>GGG	p.V374G	SLC22A5_uc003kwx.3_Missense_Mutation_p.V398G|SLC22A5_uc010jdr.1_Intron	NM_003060	NP_003051	O76082	S22A5_HUMAN	solute carrier family 22 member 5	374	Helical; Name=8; (Potential).				positive regulation of intestinal epithelial structure maintenance|quorum sensing involved in interaction with host|sodium ion transport|sodium-dependent organic cation transport	apical plasma membrane|brush border membrane|integral to membrane	ATP binding|carnitine transporter activity|PDZ domain binding|symporter activity				0		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	GACATCTTTGTGAACTGCTTC	0.502													14	54					0	0	0.00244969	0	0
SLC22A5	6584	broad.mit.edu	37	5	131726460	131726460	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:131726460C>T	uc003kww.3	+	7	1395	c.1131C>T	c.(1129-1131)TTC>TTT	p.F377F	SLC22A5_uc003kwx.3_Silent_p.F401F|SLC22A5_uc010jdr.1_Intron	NM_003060	NP_003051	O76082	S22A5_HUMAN	solute carrier family 22 member 5	377	Helical; Name=8; (Potential).				positive regulation of intestinal epithelial structure maintenance|quorum sensing involved in interaction with host|sodium ion transport|sodium-dependent organic cation transport	apical plasma membrane|brush border membrane|integral to membrane	ATP binding|carnitine transporter activity|PDZ domain binding|symporter activity				0		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	TGAACTGCTTCCTTTCAGCGA	0.507													10	54					0	0	0.000978159	0	0
C5orf20	140947	broad.mit.edu	37	5	134782185	134782185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:134782185G>A	uc003lav.2	-	1	854	c.614C>T	c.(613-615)TCG>TTG	p.S205L		NM_130848	NP_570900	Q8TF63	DCNP1_HUMAN	dendritic cell nuclear protein 1	205	Ser-rich.					nucleus					0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TATCAAGTGCGAAGACCAGGC	0.537													11	33					0	0	0.000673444	0	0
TGFBI	7045	broad.mit.edu	37	5	135382658	135382658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:135382658C>T	uc003lbf.3	+	5	739	c.578C>T	c.(577-579)TCT>TTT	p.S193F	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_Missense_Mutation_p.S19F|TGFBI_uc011cyb.1_Missense_Mutation_p.S19F|TGFBI_uc010jed.2_5'Flank	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	193	FAS1 1.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACCCTCACCTCTATGTACCAG	0.522													5	11					0	0	0.000602214	0	0
TRPC7	57113	broad.mit.edu	37	5	135692717	135692717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:135692717C>T	uc003lbn.1	-	1	359	c.356G>A	c.(355-357)CGC>CAC	p.R119H	TRPC7_uc010jef.1_Missense_Mutation_p.R111H|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.R111H|TRPC7_uc010jei.1_Missense_Mutation_p.R111H|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	120	Cytoplasmic (Potential).|ANK 3.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CTCCACGATGCGCACATAGCC	0.662													5	18					0	0	0.000602214	0	0
SPOCK1	6695	broad.mit.edu	37	5	136602742	136602742	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:136602742A>C	uc003lbo.2	-	2	380	c.189T>G	c.(187-189)GAT>GAG	p.D63E	SPOCK1_uc003lbp.2_Missense_Mutation_p.D63E	NM_004598	NP_004589	Q08629	TICN1_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	63					cell adhesion|cell proliferation|cellular component movement|nervous system development|signal transduction	proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGAAATAATCATCCTATATAA	0.363													19	66					0	0	0.000958276	0	0
KLHL3	26249	broad.mit.edu	37	5	136964127	136964127	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:136964127C>T	uc010jek.2	-	13	1895	c.1451_splice	c.e13-1	p.G484_splice	KLHL3_uc011cyc.1_Splice_Site_p.G219_splice|KLHL3_uc003lbr.3_Splice_Site_p.G402_splice|KLHL3_uc011cyd.1_Splice_Site	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3							cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		ACTCCAACCCCTGAAAGGCAG	0.403													10	45					0	0	0.00185496	0	0
PKD2L2	27039	broad.mit.edu	37	5	137242080	137242080	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:137242080A>C	uc003lby.2	+	6	988	c.932A>C	c.(931-933)TAT>TCT	p.Y311S	PKD2L2_uc010jep.1_Missense_Mutation_p.Y251S|PKD2L2_uc003lbw.1_Missense_Mutation_p.Y311S|PKD2L2_uc003lbx.2_Missense_Mutation_p.Y311S|PKD2L2_uc011cyi.1_5'UTR	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	311	Cytoplasmic (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			AAGTCTGCCTATTTCAAAAGT	0.323													16	55					0	0	0.00152264	0	0
EGR1	1958	broad.mit.edu	37	5	137802972	137802972	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:137802972G>A	uc003ldb.1	+	2	1104	c.834G>A	c.(832-834)GAG>GAA	p.E278E	EGR1_uc011cyu.1_Intron	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	278					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			AGGGCCTGGAGAGCCGCACCC	0.617													6	31					0	0	0.00307968	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139815696	139815696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:139815696C>T	uc003lfs.1	+	2	438	c.314C>T	c.(313-315)TCA>TTA	p.S105L	ANKHD1_uc003lfq.1_Missense_Mutation_p.S105L|ANKHD1_uc003lfr.2_Missense_Mutation_p.S105L|ANKHD1_uc003lfp.2_Missense_Mutation_p.S105L|ANKHD1_uc003lfo.2_Missense_Mutation_p.S105L|ANKHD1_uc010jfk.2_Missense_Mutation_p.S105L	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	105						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGTTGAATCATTTATTTTG	0.318													8	20					0	0	0.000274275	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139908859	139908859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:139908859C>T	uc003lfs.1	+	29	6452	c.6328C>T	c.(6328-6330)CCC>TCC	p.P2110S	ANKHD1_uc003lfr.2_Missense_Mutation_p.P2110S|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.P849S|ANKHD1_uc003lfw.2_Missense_Mutation_p.P748S|ANKHD1_uc010jfl.2_Missense_Mutation_p.P545S|ANKHD1-EIF4EBP3_uc003lfx.1_Missense_Mutation_p.P247S	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	2110						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTGACATCACCCAGAATGGT	0.463													24	148					0	0	0.00395357	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167308	140167308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140167308C>T	uc003lhb.2	+	1	1433	c.1433C>T	c.(1432-1434)TCT>TTT	p.S478F	PCDHA1_uc003lha.2_Missense_Mutation_p.S478F|PCDHA1_uc003lgz.2_Missense_Mutation_p.S478F	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	478	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCACGGTGTCTGCGCGGGAC	0.652													12	51					0	0	0.00185496	0	0
PCDHA2	56146	broad.mit.edu	37	5	140174570	140174570	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140174570G>A	uc003lhd.2	+	1	127	c.21G>A	c.(19-21)AGG>AGA	p.R7R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.R7R|PCDHA2_uc011czy.1_Silent_p.R7R	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	7					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTATCAGAAGGGGCCGAGGGG	0.522													23	41					0	0	0.000878237	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176221	140176221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140176221G>A	uc003lhd.2	+	1	1778	c.1672G>A	c.(1672-1674)GAG>AAG	p.E558K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E558K|PCDHA2_uc011czy.1_Missense_Mutation_p.E558K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	558	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCTGGACGAGAACGACAA	0.687													7	37					0	0	0.000442599	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188444	140188444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140188444G>A	uc003lhi.2	+	1	1773	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.E558K|PCDHA4_uc011daa.1_Missense_Mutation_p.E558K	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	558	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCTGGACGAAAACGACAA	0.667													32	27					0	0	0.000953801	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214884	140214884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140214884G>A	uc003lhq.2	+	1	916	c.916G>A	c.(916-918)GGA>AGA	p.G306R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.G306R	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	306	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACAGTGATAGGACATATGGA	0.448													11	21					0	0	0.00229938	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256285	140256285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140256285G>A	uc003lic.2	+	1	1355	c.1228G>A	c.(1228-1230)GAC>AAC	p.D410N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.D410N	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	410	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTGGTGCTGGACAGCGCCCT	0.602													53	80					0	0	0.00361006	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482081	140482081	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140482081C>G	uc003lio.2	+	1	1848	c.1848C>G	c.(1846-1848)GGC>GGG	p.G616G	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	616	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCTGTTCGGCGTGTGGGCGC	0.687													12	48					0	0	0.00316338	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531337	140531337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140531337C>T	uc003lir.2	+	1	1499	c.1499C>T	c.(1498-1500)TCC>TTC	p.S500F	PCDHB6_uc011dah.1_Missense_Mutation_p.S364F	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	500	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCCTCTCTTCCCTGGTCTCC	0.652													15	43					0	0	0.00074312	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553662	140553662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140553662G>A	uc003lit.2	+	1	1420	c.1246G>A	c.(1246-1248)GAG>AAG	p.E416K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	416	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGGAACACTGAGTACAACAT	0.517													12	30					0	0	0.000978159	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553676	140553676	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140553676C>T	uc003lit.2	+	1	1434	c.1260C>T	c.(1258-1260)ACC>ACT	p.T420T		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	420	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAACATCACCATCACCGTCA	0.512													6	46					0	0	0.00116845	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559667	140559667	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140559667C>T	uc011dai.1	+	1	2238	c.2052C>T	c.(2050-2052)GCC>GCT	p.A684A	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	684	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGGCCAGGCCGACTCTCTCA	0.672													18	56					0	0	0.00188189	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579977	140579977	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140579977C>T	uc003liy.2	+	1	630	c.630C>T	c.(628-630)TTC>TTT	p.F210F	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	210	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCTCAGTTTCATCCTCTCTG	0.493													12	43					0	0	0.000978159	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626991	140626991	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140626991C>T	uc003lje.2	+	1	1845	c.1845C>T	c.(1843-1845)TTC>TTT	p.F615F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	615	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGGGCTGTTCGGCGTGTGGG	0.687													6	31					0	0	0.00307968	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711095	140711095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140711095C>T	uc003lji.1	+	1	844	c.844C>T	c.(844-846)CAC>TAC	p.H282Y	PCDHGA1_uc011dan.1_Missense_Mutation_p.H282Y	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	282	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTACTCCTTTCACAATGTAGA	0.423													15	31					0	0	0.000566183	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712330	140712330	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140712330G>A	uc003lji.1	+	1	2079	c.2079G>A	c.(2077-2079)CTG>CTA	p.L693L	PCDHGA1_uc011dan.1_Silent_p.L693L	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	693	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTGTACCTGGTGGTGGCGG	0.672													14	60					0	0	0.00121646	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140732168	140732168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140732168C>T	uc003ljo.1	+	1	2341	c.2341C>T	c.(2341-2343)CCT>TCT	p.P781S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Missense_Mutation_p.P781S|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	781	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGTGATGATCCTTCTATGGT	0.408													10	11					0	0	0.000673444	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736453	140736453	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140736453C>T	uc003ljq.1	+	1	1686	c.1686C>T	c.(1684-1686)ATC>ATT	p.I562I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Silent_p.I562I	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	562	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCCTGAGATCCTGTACCCCA	0.582													10	94					0	0	0.000978159	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751425	140751425	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140751425C>T	uc003ljw.1	+	1	1464	c.1464C>T	c.(1462-1464)TCC>TCT	p.S488S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.S488S|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	488	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTTGTCTCCTACTACATCG	0.632													29	28					0	0	0.00209593	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768882	140768882	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140768882G>A	uc003lkc.1	+	1	1431	c.1431G>A	c.(1429-1431)CCG>CCA	p.P477P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.P477P	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	477	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCTGATCCGGACTTGGGGC	0.572													19	43					0	0	0.00229938	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778357	140778357	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140778357C>T	uc003lkf.1	+	1	663	c.663C>T	c.(661-663)CCC>CCT	p.P221P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.P221P	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	221	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACATCCACCCCTAAGCGGCA	0.537													20	69					0	0	0.00229938	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778464	140778464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140778464C>T	uc003lkf.1	+	1	770	c.770C>T	c.(769-771)CCA>CTA	p.P257L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.P257L	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	257	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACGTGCCACCAGGCACCACT	0.522													18	55					0	0	0.00074312	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784758	140784758	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140784758C>T	uc003lkh.1	+	1	2239	c.2239C>T	c.(2239-2241)CGA>TGA	p.R747*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Nonsense_Mutation_p.R747*	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	747	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGATGGGGTTCGAGCTTTCCT	0.567													10	28					0	0	0.000442599	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140867061	140867061	+	Missense_Mutation	SNP	C	T	T	rs116370895	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140867061C>T	uc003lky.1	+	1	2321	c.2321C>T	c.(2320-2322)CCC>CTC	p.P774L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.P774L|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	774	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTGTACACCCTTGGCTTCT	0.572													17	19					0	0	0.00074312	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140885026	140885026	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140885026C>T	uc003lla.1	+	3	2586	c.2586C>T	c.(2584-2586)GCC>GCT	p.A862A	PCDHGA1_uc003lji.1_Silent_p.A849A|PCDHGA2_uc003ljk.1_Silent_p.A850A|PCDHGA3_uc003ljm.1_Silent_p.A850A|PCDHGA3_uc010jfx.1_Silent_p.A610A|PCDHGB1_uc003ljo.1_Silent_p.A845A|PCDHGA4_uc003ljq.1_Silent_p.A849A|PCDHGB2_uc003ljs.1_Silent_p.A849A|PCDHGA5_uc003lju.1_Silent_p.A849A|PCDHGB3_uc003ljw.1_Silent_p.A847A|PCDHGA6_uc003ljy.1_Silent_p.A850A|PCDHGA7_uc003lka.1_Silent_p.A850A|PCDHGB4_uc003lkc.1_Silent_p.A841A|PCDHGA8_uc003lkd.1_Silent_p.A850A|PCDHGB5_uc003lkf.1_Silent_p.A841A|PCDHGA9_uc003lkh.1_Silent_p.A850A|PCDHGB6_uc003lkj.1_Silent_p.A848A|PCDHGA10_uc003lkl.1_Silent_p.A854A|PCDHGB7_uc003lkn.1_Silent_p.A847A|PCDHGA11_uc003lkp.1_Silent_p.A668A|PCDHGA11_uc003lkq.1_Silent_p.A853A|PCDHGA12_uc003lkt.1_Silent_p.A850A|PCDHGC3_uc003lkv.1_Silent_p.A852A|PCDHGC3_uc003lkw.1_Silent_p.A52A|PCDHGC4_uc003lky.1_Silent_p.A856A	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	862	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTGCAAGCCATGATCTTGG	0.577													12	58					0	0	0.00244969	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140890536	140890536	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:140890536C>T	uc003lla.1	+	4	2631	c.2631C>T	c.(2629-2631)ACC>ACT	p.T877T	PCDHGA1_uc003lji.1_Silent_p.T864T|PCDHGA2_uc003ljk.1_Silent_p.T865T|PCDHGA3_uc003ljm.1_Silent_p.T865T|PCDHGA3_uc010jfx.1_Silent_p.T625T|PCDHGB1_uc003ljo.1_Silent_p.T860T|PCDHGA4_uc003ljq.1_Silent_p.T864T|PCDHGB2_uc003ljs.1_Silent_p.T864T|PCDHGA5_uc003lju.1_Silent_p.T864T|PCDHGB3_uc003ljw.1_Silent_p.T862T|PCDHGA6_uc003ljy.1_Silent_p.T865T|PCDHGA7_uc003lka.1_Silent_p.T865T|PCDHGB4_uc003lkc.1_Silent_p.T856T|PCDHGA8_uc003lkd.1_Silent_p.T865T|PCDHGB5_uc003lkf.1_Silent_p.T856T|PCDHGA9_uc003lkh.1_Silent_p.T865T|PCDHGB6_uc003lkj.1_Silent_p.T863T|PCDHGA10_uc003lkl.1_Silent_p.T869T|PCDHGB7_uc003lkn.1_Silent_p.T862T|PCDHGA11_uc003lkp.1_Silent_p.T683T|PCDHGA11_uc003lkq.1_Silent_p.T868T|PCDHGA12_uc003lkt.1_Silent_p.T865T|PCDHGC3_uc003lkv.1_Silent_p.T867T|PCDHGC3_uc003lkw.1_Silent_p.T67T|PCDHGC4_uc003lky.1_Silent_p.T871T	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	877	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGCTCCACCCTGGGAGGGG	0.587													17	79					0	0	0.00229938	0	0
ARAP3	64411	broad.mit.edu	37	5	141036104	141036104	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:141036104A>G	uc003llm.2	-	27	3834	c.3756T>C	c.(3754-3756)CGT>CGC	p.R1252R	ARAP3_uc003lll.2_Silent_p.R203R|ARAP3_uc011dbe.1_Silent_p.R914R|ARAP3_uc003lln.2_Silent_p.R1083R	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1252	PH 3.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						GGCAGCGGCCACGCAGCAGAA	0.642													5	6					0	0	0.000602214	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246210	145246210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:145246210C>T	uc003lns.1	-	2	418	c.418G>A	c.(418-420)GAT>AAT	p.D140N		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	140											0						CTCACAAAATCTCTCTTGTCC	0.418													17	72					0	0	0.00074312	0	0
PPP2R2B	5521	broad.mit.edu	37	5	145979936	145979936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:145979936C>T	uc003loe.2	-	7	1403	c.878G>A	c.(877-879)GGG>GAG	p.G293E	PPP2R2B_uc010jgm.2_Missense_Mutation_p.G282E|PPP2R2B_uc003log.3_Missense_Mutation_p.G293E|PPP2R2B_uc003lof.3_Missense_Mutation_p.G293E|PPP2R2B_uc003loi.3_Missense_Mutation_p.G296E|PPP2R2B_uc003loh.3_Missense_Mutation_p.G293E|PPP2R2B_uc003loj.3_Missense_Mutation_p.G273E|PPP2R2B_uc003lok.3_Missense_Mutation_p.G282E|PPP2R2B_uc011dbu.1_Missense_Mutation_p.G299E|PPP2R2B_uc011dbv.1_Missense_Mutation_p.G351E	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	293	WD 5.				apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GATATACCTCCCACTGTGGCT	0.458													4	31					0	0	0.00024832	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147019290	147019290	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:147019290G>A	uc003loq.1	-	10	1817	c.1435C>T	c.(1435-1437)CGA>TGA	p.R479*	JAKMIP2_uc011dbx.1_Nonsense_Mutation_p.R437*|JAKMIP2_uc003lor.1_Nonsense_Mutation_p.R479*|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Nonsense_Mutation_p.R479*	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	479	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTAATTGTCGAAATCTTAGT	0.423													14	98					0	0	0.000566183	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147020381	147020381	+	Silent	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:147020381A>C	uc003loq.1	-	9	1669	c.1287T>G	c.(1285-1287)CCT>CCG	p.P429P	JAKMIP2_uc011dbx.1_Silent_p.P387P|JAKMIP2_uc003lor.1_Silent_p.P429P|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Silent_p.P429P	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	429						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTCCAAAACAGGCCTCTAAA	0.418													5	22					0	0	0.00198382	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147024484	147024484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:147024484C>T	uc003loq.1	-	6	1394	c.1012G>A	c.(1012-1014)GAT>AAT	p.D338N	JAKMIP2_uc011dbx.1_Missense_Mutation_p.D296N|JAKMIP2_uc003lor.1_Missense_Mutation_p.D338N|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.D338N	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	338	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCAGTTCATCGTTTCTCTTG	0.433													19	55					0	0	0.00188189	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147040907	147040907	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:147040907G>A	uc003loq.1	-	3	613	c.231C>T	c.(229-231)CTC>CTT	p.L77L	JAKMIP2_uc011dbx.1_Silent_p.L35L|JAKMIP2_uc003lor.1_Silent_p.L77L|uc003lop.1_3'UTR|JAKMIP2_uc010jgo.1_Silent_p.L77L	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	77	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTCCTCATGGAGCTTGGCTT	0.512													21	77					0	0	0.00188189	0	0
ADRB2	154	broad.mit.edu	37	5	148207009	148207009	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:148207009C>T	uc003lpr.1	+	1	854	c.615C>T	c.(613-615)ATC>ATT	p.I205I	SH3TC2_uc003lpp.1_Intron	NM_000024	NP_000015	P07550	ADRB2_HUMAN	adrenergic, beta-2-, receptor, surface	205	Helical; Name=5.|Agonist and antagonist binding.				activation of transmembrane receptor protein tyrosine kinase activity|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|endosome to lysosome transport|positive regulation of MAPKKK cascade|receptor-mediated endocytosis	endosome|integral to plasma membrane|lysosome|receptor complex	beta2-adrenergic receptor activity|norepinephrine binding|potassium channel regulator activity|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Alprenolol(DB00866)|Arformoterol(DB01274)|Bambuterol(DB01408)|Bisoprolol(DB00612)|Bitolterol(DB00901)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Clenbuterol(DB01407)|Desipramine(DB01151)|Epinephrine(DB00668)|Fenoterol(DB01288)|Formoterol(DB00983)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Nadolol(DB01203)|Norepinephrine(DB00368)|Orciprenaline(DB00816)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Pirbuterol(DB01291)|Procaterol(DB01366)|Propranolol(DB00571)|Pseudoephedrine(DB00852)|Ritodrine(DB00867)|Salbutamol(DB01001)|Salmeterol(DB00938)|Terbutaline(DB00871)|Timolol(DB00373)	CCTCTTCCATCGTGTCCTTCT	0.537													32	120					0	0	0.00170553	0	0
SH3TC2	79628	broad.mit.edu	37	5	148406852	148406852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:148406852C>T	uc003lpu.2	-	11	2595	c.2443G>A	c.(2443-2445)GCT>ACT	p.A815T	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Missense_Mutation_p.A459T|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Missense_Mutation_p.A362T|SH3TC2_uc010jgx.2_Missense_Mutation_p.A808T|SH3TC2_uc003lpv.1_Missense_Mutation_p.A362T|SH3TC2_uc011dbz.1_Missense_Mutation_p.A700T	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	815							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACATCCAAAGCCTTCTTGGCC	0.557													12	48					0	0	0.00136819	0	0
ABLIM3	22885	broad.mit.edu	37	5	148619370	148619370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:148619370G>A	uc003lpy.2	+	13	1374	c.1123G>A	c.(1123-1125)GGG>AGG	p.G375R	ABLIM3_uc003lpz.1_Missense_Mutation_p.G375R|ABLIM3_uc003lqa.1_Missense_Mutation_p.G321R|ABLIM3_uc003lqb.2_Missense_Mutation_p.G313R|ABLIM3_uc003lqc.1_Missense_Mutation_p.G375R|ABLIM3_uc003lqd.1_Missense_Mutation_p.G313R|ABLIM3_uc003lqf.2_Missense_Mutation_p.G313R|ABLIM3_uc003lqe.1_Missense_Mutation_p.G313R	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	375					axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCAGCCCGGGGTACATAGA	0.632													6	24					0	0	0.00116845	0	0
TCOF1	6949	broad.mit.edu	37	5	149755694	149755694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:149755694C>T	uc003lry.2	+	13	2051	c.1943C>T	c.(1942-1944)ACC>ATC	p.T648I	TCOF1_uc003lrw.2_Missense_Mutation_p.T648I|TCOF1_uc011dch.1_Missense_Mutation_p.T648I|TCOF1_uc003lrz.2_Missense_Mutation_p.T648I|TCOF1_uc003lrx.2_Missense_Mutation_p.T571I|TCOF1_uc003lsa.2_Missense_Mutation_p.T571I|TCOF1_uc011dci.1_Missense_Mutation_p.T137I	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	648					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCAAAGAAAACCAATACCACT	0.572													25	77					0	0	0.00106085	0	0
NDST1	3340	broad.mit.edu	37	5	149925012	149925012	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:149925012C>A	uc003lsk.3	+	11	2611	c.2109C>A	c.(2107-2109)CTC>CTA	p.L703L	NDST1_uc011dcj.1_Silent_p.L703L	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	703	Heparan sulfate N-sulfotransferase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGACCATCCTCATCAACCCCG	0.597													24	88					5.77227e-19	1.62369e-18	0.001512	1	0
TNIP1	10318	broad.mit.edu	37	5	150411892	150411892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:150411892C>T	uc003ltf.2	-	17	2421	c.1832G>A	c.(1831-1833)AGC>AAC	p.S611N	TNIP1_uc011dcn.1_Missense_Mutation_p.S129N|TNIP1_uc010jhl.2_RNA|TNIP1_uc010jhm.2_Missense_Mutation_p.S547N|TNIP1_uc010jhn.2_Intron|TNIP1_uc011dco.1_Missense_Mutation_p.A617T|TNIP1_uc003lth.2_RNA|TNIP1_uc003lti.2_Missense_Mutation_p.S611N|TNIP1_uc003ltg.2_Missense_Mutation_p.S558N|TNIP1_uc003ltj.2_Missense_Mutation_p.S611N|TNIP1_uc010jho.1_RNA|TNIP1_uc010jhq.1_Intron|TNIP1_uc010jhp.1_Missense_Mutation_p.S494N|TNIP1_uc010jhr.1_Missense_Mutation_p.S611N|TNIP1_uc003ltk.2_Missense_Mutation_p.S611N	NM_006058	NP_006049	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	611	Pro-rich.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CACTTGGGAGCTCTGATTTGG	0.473													6	24					0	0	0.00307968	0	0
ANXA6	309	broad.mit.edu	37	5	150488021	150488021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:150488021G>A	uc003ltl.1	-	23	1927	c.1775C>T	c.(1774-1776)GCC>GTC	p.A592V	ANXA6_uc011dcp.1_Missense_Mutation_p.A560V|ANXA6_uc003ltm.1_Missense_Mutation_p.A586V|ANXA6_uc003ltn.1_Missense_Mutation_p.A379V|ANXA6_uc003lto.1_Missense_Mutation_p.A179V	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	592	Annexin 7.					melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTTACCAATGGCCACAAATGC	0.517													43	69					0	0	0.00361006	0	0
SLC36A3	285641	broad.mit.edu	37	5	150666980	150666980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:150666980C>T	uc003ltw.2	-	6	954	c.535G>A	c.(535-537)GAG>AAG	p.E179K	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Missense_Mutation_p.E164K|SLC36A3_uc003ltx.2_Missense_Mutation_p.E220K	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	179	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCAGAATCTCCCTGGGCTGG	0.443													9	47					0	0	0.000442599	0	0
SLC36A2	153201	broad.mit.edu	37	5	150696446	150696446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:150696446C>T	uc003lty.2	-	10	1514	c.1384G>A	c.(1384-1386)GCC>ACC	p.A462T	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Missense_Mutation_p.A264T	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	462	Extracellular (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCGTCCAGGGCCTGGTAGGTC	0.592													8	21					0	0	0.00307968	0	0
FAT2	2196	broad.mit.edu	37	5	150905352	150905352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:150905352C>T	uc003lue.3	-	17	10496	c.10483G>A	c.(10483-10485)GAA>AAA	p.E3495K	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.E188K	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3495	Extracellular (Potential).|Cadherin 31.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGATACCATTCCTGAGCCCTC	0.567													6	24					0	0	0.00307968	0	0
GRIA1	2890	broad.mit.edu	37	5	152870489	152870489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:152870489G>A	uc003lva.3	+	1	406	c.41G>A	c.(40-42)GGC>GAC	p.G14D	GRIA1_uc003luy.3_Missense_Mutation_p.G14D|GRIA1_uc003luz.3_5'UTR|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.G14D|GRIA1_uc011dcx.1_5'Flank|GRIA1_uc011dcy.1_5'Flank|GRIA1_uc011dcz.1_5'Flank|GRIA1_uc010jia.1_Intron	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	14					synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGTTTCCTAGGCGCGGTAGTA	0.512													49	72					0	0	0.00361006	0	0
FAM114A2	10827	broad.mit.edu	37	5	153414386	153414386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:153414386G>A	uc003lvb.2	-	2	716	c.128C>T	c.(127-129)TCA>TTA	p.S43L	FAM114A2_uc003lvc.2_Missense_Mutation_p.S43L|FAM114A2_uc003lvd.2_Missense_Mutation_p.S43L|FAM114A2_uc003lve.2_5'UTR|FAM114A2_uc011dda.1_Intron	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	43							purine nucleotide binding				0						TACAGGTTCTGATTTACTCTC	0.473													29	86					0	0	0.001512	0	0
MFAP3	4238	broad.mit.edu	37	5	153432814	153432814	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:153432814C>T	uc003lvf.2	+	3	1146	c.630C>T	c.(628-630)ACC>ACT	p.T210T	MFAP3_uc010jib.2_Silent_p.T210T|MFAP3_uc011ddb.1_Silent_p.T64T	NM_001135037	NP_001128509	P55082	MFAP3_HUMAN	microfibrillar-associated protein 3 isoform 2	210	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	Renal(175;0.00488)	Lung NSC(249;0.00145)|all_lung(500;0.00226)|all_neural(177;0.122)|Breast(839;0.14)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;9.69e-06)|GBM - Glioblastoma multiforme(465;0.0201)		CCATCATTACCTCAGCCAAAA	0.448													12	27					0	0	0.000978159	0	0
GEMIN5	25929	broad.mit.edu	37	5	154271173	154271173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:154271173G>A	uc003lvx.3	-	26	3973	c.3890C>T	c.(3889-3891)CCA>CTA	p.P1297L	GEMIN5_uc011ddk.1_Missense_Mutation_p.P1296L	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1297					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACTGGAATTTGGGCAAGGTCT	0.502													15	30					0	0	0.000422831	0	0
CYFIP2	26999	broad.mit.edu	37	5	156746781	156746781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:156746781G>A	uc003lwq.2	+	16	1506	c.1368G>A	c.(1366-1368)ATG>ATA	p.M456I	CYFIP2_uc011ddn.1_Missense_Mutation_p.M430I|CYFIP2_uc011ddo.1_Missense_Mutation_p.M260I|CYFIP2_uc003lwr.2_Missense_Mutation_p.M456I|CYFIP2_uc003lws.2_Missense_Mutation_p.M456I|CYFIP2_uc003lwt.2_Missense_Mutation_p.M334I|CYFIP2_uc011ddp.1_Missense_Mutation_p.M190I	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	456					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGATCGCCATGATCAAAGGCC	0.607													31	77					0	0	0.00178596	0	0
CYFIP2	26999	broad.mit.edu	37	5	156816212	156816212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:156816212C>T	uc003lwq.2	+	31	3361	c.3223C>T	c.(3223-3225)CGC>TGC	p.R1075C	CYFIP2_uc011ddn.1_Missense_Mutation_p.R1049C|CYFIP2_uc011ddo.1_Missense_Mutation_p.R879C|CYFIP2_uc003lwr.2_Missense_Mutation_p.R1075C|CYFIP2_uc003lws.2_Missense_Mutation_p.R1075C|CYFIP2_uc003lwt.2_Missense_Mutation_p.R978C|CYFIP2_uc011ddp.1_Missense_Mutation_p.R809C|CYFIP2_uc003lwv.2_Missense_Mutation_p.R30C	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1100					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CGCCATTGCTCGCGAGGGTGA	0.577													11	70					0	0	0.000978159	0	0
ADAM19	8728	broad.mit.edu	37	5	156921748	156921749	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:156921748_156921749GG>AA	uc003lwz.2	-	15	1713_1714	c.1649_1650CC>TT	c.(1648-1650)ACC>ATT	p.T550I	ADAM19_uc003lww.1_Missense_Mutation_p.T283I|ADAM19_uc003lwy.2_Missense_Mutation_p.T149I|ADAM19_uc011ddr.1_Missense_Mutation_p.T481I	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	550	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGTTTCCAAAGGTGTCTCCTGC	0.51													12	65					0	0	6.4e-05	0	0
ADAM19	8728	broad.mit.edu	37	5	156997925	156997925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:156997925G>A	uc003lwz.2	-	2	222	c.158C>T	c.(157-159)TCA>TTA	p.S53L	ADAM19_uc003lww.1_5'UTR|ADAM19_uc011ddr.1_5'UTR	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	53					proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGGCTTTCTGAAGTCTTCCA	0.463													11	65					0	0	0.00244969	0	0
EBF1	1879	broad.mit.edu	37	5	158250240	158250240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:158250240C>T	uc010jip.2	-	8	1024	c.722G>A	c.(721-723)GGG>GAG	p.G241E	EBF1_uc011ddw.1_Missense_Mutation_p.G108E|EBF1_uc011ddx.1_Missense_Mutation_p.G241E|EBF1_uc003lxl.3_Missense_Mutation_p.G218E	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	241					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCCCTCCGCCCATGCTTGGA	0.488			T	HMGA2	lipoma								4	13					0	0	0.000602214	0	0
ATP10B	23120	broad.mit.edu	37	5	160029662	160029662	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:160029662C>T	uc003lym.1	-	21	4132	c.3285G>A	c.(3283-3285)AAG>AAA	p.K1095K	ATP10B_uc010jit.1_Silent_p.K412K	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1095	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCAGCAACTTCTTGAGATGCT	0.552													4	10					0	0	0.00024832	0	0
GABRB2	2561	broad.mit.edu	37	5	160757911	160757911	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:160757911C>T	uc003lys.1	-	9	1274	c.1056G>A	c.(1054-1056)AAG>AAA	p.K352K	GABRB2_uc011deh.1_Silent_p.K191K|GABRB2_uc003lyr.1_Silent_p.K352K|GABRB2_uc003lyt.1_Silent_p.K352K|GABRB2_uc010jiu.1_Silent_p.K289K	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	352	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CCAGGCGCATCTTCTCATTGT	0.433													25	104					0	0	0.00106085	0	0
GABRA6	2559	broad.mit.edu	37	5	161116108	161116108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:161116108C>T	uc003lyu.2	+	4	717	c.379C>T	c.(379-381)CAC>TAC	p.H127Y	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	127	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GTCCATTGCTCACAACATGAC	0.403										TCGA Ovarian(5;0.080)			9	29					0	0	0.000442599	0	0
GABRA6	2559	broad.mit.edu	37	5	161116152	161116152	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:161116152T>G	uc003lyu.2	+	4	761	c.423T>G	c.(421-423)AAT>AAG	p.N141K	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	141	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TAATGCAGAATGGAACCATTT	0.373										TCGA Ovarian(5;0.080)			6	27					0	0	0.00198382	0	0
GABRG2	2566	broad.mit.edu	37	5	161520953	161520953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:161520953G>A	uc003lyz.3	+	2	585	c.227G>A	c.(226-228)GGA>GAA	p.G76E	GABRG2_uc010jjc.2_Missense_Mutation_p.G76E|GABRG2_uc003lyy.3_Missense_Mutation_p.G76E|GABRG2_uc011dej.1_5'UTR	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	76	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		CTGCTGGAAGGATATGACAAT	0.373													8	25					0	0	0.00307968	0	0
HMMR	3161	broad.mit.edu	37	5	162898382	162898382	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:162898382A>G	uc003lzf.2	+	7	742	c.560A>G	c.(559-561)AAG>AGG	p.K187R	HMMR_uc003lzh.2_Missense_Mutation_p.K188R|HMMR_uc003lzg.2_Missense_Mutation_p.K172R|HMMR_uc011dem.1_Missense_Mutation_p.K101R	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	187						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		ATGATGGCTAAGCAAGAAGGC	0.473													10	28					0	0	0.00185496	0	0
HMMR	3161	broad.mit.edu	37	5	162910345	162910346	+	Missense_Mutation	DNP	AA	TG	TG			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:162910345_162910346AA>TG	uc003lzf.2	+	15	1936_1937	c.1754_1755AA>TG	c.(1753-1755)GAA>GTG	p.E585V	HMMR_uc003lzh.2_Missense_Mutation_p.E586V|HMMR_uc003lzg.2_Missense_Mutation_p.E570V|HMMR_uc011dem.1_Missense_Mutation_p.E499V|uc003lzi.2_Intron	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	585						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		CTCTATGAAGAACTATATAATA	0.322													10	83					0	0	6.4e-05	0	0
ODZ2	57451	broad.mit.edu	37	5	167645207	167645207	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:167645207C>T	uc010jjd.2	+	23	4284	c.4284C>T	c.(4282-4284)ATC>ATT	p.I1428I	ODZ2_uc003lzr.3_Silent_p.I1198I|ODZ2_uc003lzt.3_Silent_p.I801I|ODZ2_uc010jje.2_Silent_p.I692I	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		ACAATGTCATCCTTCGAATCA	0.498													43	59					0	0	0.00361006	0	0
ODZ2	57451	broad.mit.edu	37	5	167645621	167645621	+	Silent	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:167645621T>A	uc010jjd.2	+	23	4698	c.4698T>A	c.(4696-4698)CCT>CCA	p.P1566P	ODZ2_uc003lzr.3_Silent_p.P1336P|ODZ2_uc003lzt.3_Silent_p.P939P|ODZ2_uc010jje.2_Silent_p.P830P	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AGAACAAGCCTGTTCTTAATG	0.483													14	98					0	0	0.00244969	0	0
WWC1	23286	broad.mit.edu	37	5	167855772	167855772	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:167855772C>T	uc003lzu.2	+	13	2073	c.1980C>T	c.(1978-1980)ACC>ACT	p.T660T	WWC1_uc003lzv.2_Silent_p.T660T|WWC1_uc011den.1_Silent_p.T660T|WWC1_uc003lzw.2_Silent_p.T459T|WWC1_uc010jjf.1_5'Flank	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	660	C2.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		TGGGTGCGACCCGAATTCAGA	0.542													10	31					0	0	0.000978159	0	0
WWC1	23286	broad.mit.edu	37	5	167881016	167881016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:167881016G>A	uc003lzu.2	+	18	2662	c.2569G>A	c.(2569-2571)GAG>AAG	p.E857K	WWC1_uc003lzv.2_Missense_Mutation_p.E857K|WWC1_uc011den.1_Missense_Mutation_p.E857K|WWC1_uc003lzw.2_Missense_Mutation_p.E656K|WWC1_uc010jjf.1_Missense_Mutation_p.E129K	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	857	Glu-rich.|Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		AGCCgaggaagaggaggagga	0.408													7	27					0	0	0.000442599	0	0
GABRP	2568	broad.mit.edu	37	5	170222313	170222313	+	Silent	SNP	C	T	T	rs149165781		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:170222313C>T	uc003mau.2	+	5	540	c.342C>T	c.(340-342)TTC>TTT	p.F114F	GABRP_uc011dev.1_Silent_p.F114F	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	114	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCGTGGAGTTCCTCTGGGTGC	0.552													14	55					0	0	0.000422831	0	0
FBXW11	23291	broad.mit.edu	37	5	171327068	171327068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:171327068G>A	uc003mbm.1	-	4	781	c.410C>T	c.(409-411)TCG>TTG	p.S137L	FBXW11_uc011dey.1_Missense_Mutation_p.S105L|FBXW11_uc003mbl.1_Missense_Mutation_p.S124L|FBXW11_uc003mbn.1_Missense_Mutation_p.S103L	NM_012300	NP_036432	Q9UKB1	FBW1B_HUMAN	F-box and WD repeat domain containing 11 isoform	137	F-box.				cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of circadian rhythm|positive regulation of proteolysis|positive regulation of transcription, DNA-dependent|protein dephosphorylation|protein destabilization|protein polyubiquitination|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	centrosome|cytosol|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity	p.N260_I262(1)		ovary(1)|breast(1)	2	Renal(175;0.000159)|Lung NSC(126;0.00384)|all_lung(126;0.00659)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ATCCAGGTACGAAAGAATGTT	0.448													23	68					0	0	0.00332997	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171833335	171833335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:171833335G>A	uc003mbr.2	-	3	349	c.178C>T	c.(178-180)CCC>TCC	p.P60S	SH3PXD2B_uc003mbs.1_Missense_Mutation_p.P60S	NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	60	PX.				adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CCTTCCATGGGAAATTTGTCC	0.463													16	50					0	0	0.00074312	0	0
DRD1	1812	broad.mit.edu	37	5	174869174	174869174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:174869174G>A	uc003mcz.2	-	2	1874	c.929C>T	c.(928-930)TCC>TTC	p.S310F		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	310	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	AAAGGTGTTGGAATCAATGCA	0.463													7	33					0	0	0.00307968	0	0
FAM153B	202134	broad.mit.edu	37	5	175528076	175528076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:175528076G>A	uc003mdk.2	+	11	646	c.589G>A	c.(589-591)GGG>AGG	p.G197R		NM_001079529	NP_001072997	P0C7A2	F153B_HUMAN	hypothetical protein LOC202134	197										ovary(1)	1	all_cancers(89;0.00406)|Renal(175;0.000269)|Lung NSC(126;0.0103)|all_lung(126;0.0164)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Kidney(146;0.0965)		GGAGGAGCATGGGCCAGGGCA	0.493													20	181					0	0	0.00375469	0	0
C5orf25	375484	broad.mit.edu	37	5	175772235	175772235	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:175772235G>A	uc003mds.3	+	12	2813	c.2406G>A	c.(2404-2406)AGG>AGA	p.R802R	C5orf25_uc003mdt.3_Silent_p.R387R|C5orf25_uc003mdr.3_RNA|C5orf25_uc003mdv.2_Silent_p.R263R			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	802											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TAATCAAAAGGATTAAGCCCA	0.483													18	62					0	0	0.000958276	0	0
DDX41	51428	broad.mit.edu	37	5	176940065	176940065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:176940065C>T	uc003mho.2	-	12	1270	c.1249G>A	c.(1249-1251)GAG>AAG	p.E417K	DOK3_uc003mhi.3_5'Flank|DOK3_uc003mhj.3_5'Flank|DOK3_uc003mhl.2_5'Flank|DDX41_uc003mhm.2_Missense_Mutation_p.E197K|DDX41_uc003mhn.2_Missense_Mutation_p.E286K|DDX41_uc003mhp.2_Missense_Mutation_p.E286K|DDX41_uc003mhq.1_Missense_Mutation_p.E197K	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	417	Helicase C-terminal.				apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			TTGGCCTCCTCCTTCACATAT	0.612													30	57					0	0	0.00327116	0	0
GRM6	2916	broad.mit.edu	37	5	178409996	178409996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:178409996G>A	uc003mjr.2	-	9	2530	c.2351C>T	c.(2350-2352)CCC>CTC	p.P784L	GRM6_uc003mjq.2_Missense_Mutation_p.P187L	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	784	Helical; Name=6; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GAAGCCGATGGGCTTGGCCTC	0.592													8	42					0	0	0.000673444	0	0
ZNF354C	30832	broad.mit.edu	37	5	178504150	178504150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:178504150C>T	uc003mju.2	+	4	348	c.233C>T	c.(232-234)CCT>CTT	p.P78L		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	78	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		AGAGAAGTCCCTTCAGATACC	0.463													13	34					0	0	0.00244969	0	0
RUFY1	80230	broad.mit.edu	37	5	179028973	179028973	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:179028973C>T	uc003mka.1	+	15	1842	c.1842C>T	c.(1840-1842)GGC>GGT	p.G614G	RUFY1_uc003mkb.1_Silent_p.G506G|RUFY1_uc003mkc.1_Silent_p.G506G|RUFY1_uc003mkd.1_Silent_p.G216G	NM_025158	NP_079434	Q96T51	RUFY1_HUMAN	RUN and FYVE domain-containing 1 isoform a	614	Potential.				endocytosis|protein transport	early endosome membrane	lipid binding|zinc ion binding			ovary(4)|breast(1)	5	all_cancers(89;0.00018)|all_epithelial(37;8.37e-05)|Renal(175;0.000159)|Lung NSC(126;0.00108)|all_lung(126;0.00195)	all_cancers(40;0.0322)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGAAATGGGCCTGCACCTCA	0.572										HNSCC(44;0.11)			6	33					0	0	0.00198382	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179306087	179306087	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:179306087G>A	uc003mlh.2	-	9	1564	c.1527C>T	c.(1525-1527)ATC>ATT	p.I509I	TBC1D9B_uc003mli.2_Silent_p.I509I|TBC1D9B_uc003mlj.2_Silent_p.I509I	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	509	Rab-GAP TBC.					integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCTCTCAGGGATACCCTTCA	0.627													4	19					0	0	0.00116845	0	0
FLT4	2324	broad.mit.edu	37	5	180040032	180040032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:180040032G>A	uc003mma.3	-	25	3489	c.3410C>T	c.(3409-3411)CCG>CTG	p.P1137L	FLT4_uc003mlz.3_Missense_Mutation_p.P1137L	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1137	Cytoplasmic (Potential).|Protein kinase.		P -> S (in juvenile hemangioma).		positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GGCCAGCTCCGGGGCCCTCAT	0.657									Congenital_Hereditary_Lymphedema				10	44					0	0	0.000978159	0	0
FLT4	2324	broad.mit.edu	37	5	180043412	180043412	+	Silent	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:180043412A>T	uc003mma.3	-	23	3253	c.3174T>A	c.(3172-3174)CTT>CTA	p.L1058L	FLT4_uc003mlz.3_Silent_p.L1058L	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1058	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGTCCCGGGCAAGGCCAAAGT	0.617									Congenital_Hereditary_Lymphedema				4	15					0	0	0.000602214	0	0
OR2V2	285659	broad.mit.edu	37	5	180582829	180582829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:180582829G>A	uc011dhj.1	+	1	887	c.887G>A	c.(886-888)AGG>AAG	p.R296K		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTGAGGAACAGGGAGGTGATG	0.542													4	24					0	0	0.000602214	0	0
DUSP22	56940	broad.mit.edu	37	6	304638	304638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:304638G>A	uc003msx.2	+	2	471	c.32G>A	c.(31-33)GGC>GAC	p.G11D	DUSP22_uc011dhn.1_Missense_Mutation_p.G11D|DUSP22_uc003msy.1_5'UTR	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	11					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		ATCCTGCCCGGCCTGTACATC	0.368													21	207					0	0	0.00395357	0	0
EXOC2	55770	broad.mit.edu	37	6	572625	572625	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:572625G>A	uc003mtd.2	-	13	1472	c.1338C>T	c.(1336-1338)CCC>CCT	p.P446P	EXOC2_uc003mte.2_Silent_p.P446P|EXOC2_uc011dho.1_Silent_p.P41P	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	446					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		CCACCCTGTGGGGAGTTTTGT	0.443													23	102					0	0	0.00395357	0	0
PRPF4B	8899	broad.mit.edu	37	6	4042723	4042723	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:4042723T>C	uc003mvv.2	+	5	1662	c.1571T>C	c.(1570-1572)CTT>CCT	p.L524P	PRPF4B_uc003mvw.2_RNA|PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	524						catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				TCTTTAAGCCTTGAAGACTTT	0.338													13	104					0	0	0.00316338	0	0
RPP40	10799	broad.mit.edu	37	6	4998971	4998971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:4998971G>A	uc003mwl.2	-	5	573	c.538C>T	c.(538-540)CTT>TTT	p.L180F	RPP40_uc003mwm.2_Missense_Mutation_p.L157F	NM_006638	NP_006629	O75818	RPP40_HUMAN	ribonuclease P 40kDa subunit	180					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0895)				CAAGCCAAAAGAAAATCAAAT	0.289													7	56					0	0	0.00307968	0	0
CAGE1	285782	broad.mit.edu	37	6	7373626	7373627	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:7373626_7373627CC>TT	uc003mxi.2	-	4	1738_1739	c.1017_1018GG>AA	c.(1015-1020)CGGGAA>CGAAAA	p.E340K	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.E231K|CAGE1_uc003mxk.1_Missense_Mutation_p.E231K	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	476	Potential.										0	Ovarian(93;0.0418)					GCCTCTTTTTCCCGTTTCAACA	0.396													12	94					0	0	6.4e-05	0	0
RIOK1	83732	broad.mit.edu	37	6	7403054	7403054	+	Missense_Mutation	SNP	C	T	T	rs138314843		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:7403054C>T	uc003mxn.2	+	8	865	c.691C>T	c.(691-693)CGT>TGT	p.R231C	RIOK1_uc003mxm.1_Missense_Mutation_p.R127C|RIOK1_uc003mxo.2_5'UTR	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	231	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					TTCAAGATTTCGTCATGGCTA	0.318													10	69					0	0	0.00136819	0	0
DSP	1832	broad.mit.edu	37	6	7572181	7572181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:7572181G>A	uc003mxp.1	+	15	2289	c.2010G>A	c.(2008-2010)ATG>ATA	p.M670I	DSP_uc003mxq.1_Missense_Mutation_p.M670I	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	670	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GGATGCTGATGGAGCTGCAGA	0.458													14	82					0	0	0.00185496	0	0
MAK	4117	broad.mit.edu	37	6	10818140	10818140	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:10818140T>C	uc003mzl.2	-	3	450	c.221A>G	c.(220-222)CAT>CGT	p.H74R	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.H74R|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	74	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				AAAATAAAGATGGTCATTTTC	0.259													10	70					0	0	0.000442599	0	0
GCM2	9247	broad.mit.edu	37	6	10876690	10876690	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:10876690C>T	uc003mzn.3	-	3	516	c.444G>A	c.(442-444)GCG>GCA	p.A148A	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	148	GCM.				cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				GAAAAAAGATCGCGTTGCCAT	0.498													7	73					0	0	0.000442599	0	0
SYCP2L	221711	broad.mit.edu	37	6	10931690	10931690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:10931690C>T	uc003mzo.2	+	20	1947	c.1651C>T	c.(1651-1653)CCC>TCC	p.P551S	SYCP2L_uc010jow.2_Missense_Mutation_p.P171S	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	551						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			AGTTTTCCCTCCCAGTAGTGG	0.398													10	121					0	0	0.00136819	0	0
C6orf105	84830	broad.mit.edu	37	6	11778910	11778911	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:11778910_11778911CC>TT	uc003nab.2	-	1	370_371	c.82_83GG>AA	c.(82-84)GGA>AAA	p.G28K	C6orf105_uc011dip.1_Missense_Mutation_p.G28K	NM_032744	NP_116133	Q96IZ2	CF105_HUMAN	hypothetical protein LOC84830 isoform 2	28						integral to membrane					0	Ovarian(93;0.0848)|Breast(50;0.0871)	all_hematologic(90;0.135)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.193)			CTCGTCTTTTCCTTCCTGTGAG	0.455													28	178					0	0	6.4e-05	0	0
C6orf105	84830	broad.mit.edu	37	6	11778913	11778913	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:11778913T>A	uc003nab.2	-	1	368	c.80A>T	c.(79-81)GAA>GTA	p.E27V	C6orf105_uc011dip.1_Missense_Mutation_p.E27V	NM_032744	NP_116133	Q96IZ2	CF105_HUMAN	hypothetical protein LOC84830 isoform 2	27						integral to membrane					0	Ovarian(93;0.0848)|Breast(50;0.0871)	all_hematologic(90;0.135)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.193)			GTCTTTTCCTTCCTGTGAGAT	0.453													22	183					0	0	0.00188189	0	0
HIVEP1	3096	broad.mit.edu	37	6	12120594	12120594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:12120594C>T	uc003nac.2	+	4	745	c.566C>T	c.(565-567)CCC>CTC	p.P189L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	189					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ACTACGTCCCCCTCCTATACA	0.448													9	73					0	0	0.000673444	0	0
HIVEP1	3096	broad.mit.edu	37	6	12164072	12164072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:12164072C>T	uc003nac.2	+	9	7714	c.7535C>T	c.(7534-7536)CCA>CTA	p.P2512L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2512					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CAAGTCCATCCACCAGGACTG	0.537													26	34					0	0	0.00209593	0	0
GFOD1	54438	broad.mit.edu	37	6	13365590	13365590	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:13365590G>A	uc003nat.1	-	2	1223	c.558C>T	c.(556-558)TTC>TTT	p.F186F	GFOD1_uc003nas.1_Silent_p.F83F	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	186						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			GGCCGGTGAGGAAGGTGAGCA	0.607													8	28					0	0	0.00307968	0	0
RBM24	221662	broad.mit.edu	37	6	17291987	17291987	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:17291987G>A	uc003nbz.3	+	4	352	c.348G>A	c.(346-348)GGG>GGA	p.G116G	RBM24_uc003nby.3_3'UTR|RBM24_uc011dix.1_Silent_p.G58G|RBM24_uc003nca.2_Silent_p.G71G|RBM24_uc011diy.1_Missense_Mutation_p.G30E|RBM24_uc011diz.1_Missense_Mutation_p.G15E	NM_001143942	NP_001137414	Q9BX46	RBM24_HUMAN	RNA binding motif protein 24 isoform 1	116					cell differentiation|regulation of mRNA stability|regulation of myotube differentiation	cytoplasm|nucleus	mRNA 3'-UTR binding|nucleotide binding			ovary(1)|skin(1)	2	Breast(50;0.0615)|Ovarian(93;0.0733)	all_hematologic(90;0.062)	all cancers(50;0.131)|Epithelial(50;0.15)			TTCTCAACAGGATACCTGCCC	0.488													28	193					0	0	0.0024448	0	0
KIF13A	63971	broad.mit.edu	37	6	17794897	17794897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:17794897G>A	uc003ncg.3	-	24	3086	c.2981C>T	c.(2980-2982)TCC>TTC	p.S994F	KIF13A_uc003ncf.2_Missense_Mutation_p.S994F|KIF13A_uc003nch.3_Missense_Mutation_p.S994F|KIF13A_uc003nci.3_Missense_Mutation_p.S994F	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	994					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TTCTAATATGGAGATCCACAT	0.413													17	61					0	0	0.000422831	0	0
KIF13A	63971	broad.mit.edu	37	6	17805797	17805797	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:17805797T>A	uc003ncg.3	-	19	2318	c.2213A>T	c.(2212-2214)AAG>ATG	p.K738M	KIF13A_uc003ncf.2_Missense_Mutation_p.K738M|KIF13A_uc003nch.3_Missense_Mutation_p.K738M|KIF13A_uc003nci.3_Missense_Mutation_p.K738M	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	738	Potential.				cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TTGGGTGCTCTTTCCTTTCCT	0.393													13	40					0	0	0.00136819	0	0
RNF144B	255488	broad.mit.edu	37	6	18463533	18463533	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:18463533C>T	uc003ncs.2	+	7	997	c.693C>T	c.(691-693)TTC>TTT	p.F231F		NM_182757	NP_877434	Q7Z419	R144B_HUMAN	IBR domain containing 2	231					apoptosis|positive regulation of anti-apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0	Ovarian(93;0.00365)|Breast(50;0.0145)	all_hematologic(90;0.0536)	OV - Ovarian serous cystadenocarcinoma(7;0.00165)|all cancers(50;0.0102)|Epithelial(50;0.0105)			ATGACATTTTCCTCAGACATT	0.393													8	66					0	0	0.00307968	0	0
MBOAT1	154141	broad.mit.edu	37	6	20126751	20126752	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:20126751_20126752GG>TT	uc003ncx.1	-	7	915_916	c.710_711CC>AA	c.(709-711)CCC>CAA	p.P237Q	MBOAT1_uc011dji.1_Missense_Mutation_p.P88Q	NM_001080480	NP_001073949	Q6ZNC8	MBOA1_HUMAN	membrane bound O-acyltransferase domain	237					phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(95;0.244)|Breast(50;0.0379)|Ovarian(93;0.0473)|all_epithelial(95;0.109)		OV - Ovarian serous cystadenocarcinoma(7;0.00392)|all cancers(50;0.0117)|Epithelial(50;0.0454)			AACTTACTGTGGGAGAAGGTTC	0.431													10	240					0	0	6.4e-05	0	0
GPLD1	2822	broad.mit.edu	37	6	24475400	24475400	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:24475400G>A	uc003ned.1	-	5	501	c.390C>T	c.(388-390)GTC>GTT	p.V130V	GPLD1_uc010jpr.1_Missense_Mutation_p.S2L|GPLD1_uc010jps.1_Silent_p.V130V|GPLD1_uc003nee.2_Silent_p.V130V	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	130						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						TATGCCAGCTGACATCTGCCG	0.458													23	140					0	0	0.001512	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24503518	24503518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:24503518G>A	uc003neg.2	+	3	494	c.466G>A	c.(466-468)GAA>AAA	p.E156K	ALDH5A1_uc003nef.2_Missense_Mutation_p.E156K	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	156					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	GGCACATGGAGAAATTCTCTA	0.463													8	41					0	0	0.000442599	0	0
C6orf62	81688	broad.mit.edu	37	6	24716492	24716492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:24716492C>T	uc003nel.2	-	2	697	c.190G>A	c.(190-192)GAA>AAA	p.E64K		NM_030939	NP_112201	Q9GZU0	CF062_HUMAN	hypothetical protein LOC81688	64						intracellular					0						ATATTTTCTTCATAATTATTT	0.398													8	89					0	0	0.000442599	0	0
SLC17A1	6568	broad.mit.edu	37	6	25801146	25801146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:25801146G>A	uc003nfh.3	-	11	1357	c.1241C>T	c.(1240-1242)TCC>TTC	p.S414F	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.S412F|SLC17A1_uc010jqc.1_Missense_Mutation_p.S358F	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	414	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AGTCAAAGTGGAAGCAATTAG	0.289													19	145					0	0	0.00229938	0	0
HIST1H2BC	8347	broad.mit.edu	37	6	26123986	26123986	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:26123986G>A	uc003ngk.3	-	1	169	c.147C>T	c.(145-147)GTC>GTT	p.V49V	HIST1H2BC_uc003ngl.2_Silent_p.V49V|HIST1H2AC_uc003ngm.2_5'Flank|HIST1H2AC_uc003ngn.2_5'Flank|HIST1H2AC_uc003ngo.2_5'Flank|HIST1H2AC_uc003ngp.2_5'Flank	NM_003526	NP_003517	P62807	H2B1C_HUMAN	histone cluster 1, H2bc	49					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			ovary(1)	1						TGTCGGGATGGACCTGTTTCA	0.547													21	163					0	0	0.00106085	0	0
HIST1H4G	8369	broad.mit.edu	37	6	26247194	26247194	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:26247194C>T	uc003nhf.2	-	1	12	c.12G>A	c.(10-12)CGG>CGA	p.R4R		NM_003547	NP_003538	Q99525	H4G_HUMAN	histone cluster 1, H4g	4					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				CGGCCTTGCCCCGAACAGACA	0.468													8	60					0	0	0.000978159	0	0
BTN3A1	11119	broad.mit.edu	37	6	26408020	26408020	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:26408020G>A	uc003nhv.2	+	4	923	c.555G>A	c.(553-555)GAG>GAA	p.E185E	BTN3A1_uc011dkj.1_Silent_p.E185E|BTN3A1_uc011dkk.1_Intron|BTN3A1_uc010jqj.2_Silent_p.E185E	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	185	Ig-like V-type 2.|Extracellular (Potential).				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						ACAAGGGAGAGAACATCCCGA	0.547													15	70					0	0	0.000422831	0	0
BTN3A3	10384	broad.mit.edu	37	6	26452256	26452256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:26452256C>T	uc003nhz.2	+	11	1552	c.1372C>T	c.(1372-1374)CCT>TCT	p.P458S	BTN3A3_uc003nia.2_Missense_Mutation_p.P416S|BTN3A3_uc011dkn.1_Missense_Mutation_p.P409S	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	458	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane					0						TCCTGAGCCTCCTAGGAAAGT	0.498													9	55					0	0	0.000673444	0	0
ZNF184	7738	broad.mit.edu	37	6	27419126	27419126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:27419126G>A	uc003njj.2	-	5	3023	c.2212C>T	c.(2212-2214)CGC>TGC	p.R738C	ZNF184_uc010jqv.2_Missense_Mutation_p.R738C|ZNF184_uc003nji.2_Missense_Mutation_p.R738C	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	738	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGAGCAGAGCGATATCTGAAG	0.383													20	175					0	0	0.00332997	0	0
OR2B2	81697	broad.mit.edu	37	6	27879307	27879307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:27879307G>A	uc011dkw.1	-	1	791	c.791C>T	c.(790-792)TCA>TTA	p.S264L		NM_033057	NP_149046	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGAGCTGGGTGAAGGTGGTTG	0.458													11	68					0	0	0.000978159	0	0
OR2B2	81697	broad.mit.edu	37	6	27879370	27879370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:27879370G>A	uc011dkw.1	-	1	728	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_033057	NP_149046	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AATTAGATGGGAGCCACATGT	0.468													12	67					0	0	0.00136819	0	0
OR2B6	26212	broad.mit.edu	37	6	27925191	27925191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:27925191C>T	uc011dkx.1	+	1	173	c.173C>T	c.(172-174)CCC>CTC	p.P58L		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTCATACCCCCATGTATTTT	0.403													12	71					0	0	0.000566183	0	0
OR2B6	26212	broad.mit.edu	37	6	27925360	27925360	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:27925360C>T	uc011dkx.1	+	1	342	c.342C>T	c.(340-342)CTC>CTT	p.L114L		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AATATCTTCTCCTGGCCGTCA	0.463													10	64					0	0	0.000673444	0	0
OR2B6	26212	broad.mit.edu	37	6	27925897	27925897	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:27925897G>A	uc011dkx.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATACACTTAGGAACAAGGAGG	0.393													19	59					0	0	0.00188189	0	0
ZNF165	7718	broad.mit.edu	37	6	28056442	28056442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:28056442G>A	uc003nkg.2	+	5	1736	c.652G>A	c.(652-654)GAA>AAA	p.E218K	ZNF165_uc003nkh.2_Missense_Mutation_p.E218K|ZNF165_uc003nki.3_Missense_Mutation_p.E218K|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	218					viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ATACATATCAGAAGCATCTGG	0.408													46	242					0	0	0.00361006	0	0
SCAND3	114821	broad.mit.edu	37	6	28542481	28542481	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:28542481T>C	uc003nlo.2	-	3	2619	c.2001A>G	c.(1999-2001)AAA>AAG	p.K667K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	667					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTTTGGAAGGTTTAACAGGCA	0.438													16	109					0	0	0.000566183	0	0
SCAND3	114821	broad.mit.edu	37	6	28543486	28543486	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:28543486C>T	uc003nlo.2	-	3	1614	c.996G>A	c.(994-996)GCG>GCA	p.A332A		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	332					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCTTGTATTTCGCTTGTAACT	0.378													21	165					0	0	0.00188189	0	0
OR2W1	26692	broad.mit.edu	37	6	29012353	29012353	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:29012353G>A	uc003nlw.2	-	1	600	c.600C>T	c.(598-600)TTC>TTT	p.F200F		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TGCCTAAAGCGAAAACAGACA	0.423													61	59					0	0	0.00361006	0	0
OR2B3	442184	broad.mit.edu	37	6	29054169	29054169	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:29054169T>C	uc003nlx.2	-	1	922	c.857A>G	c.(856-858)AAC>AGC	p.N286S		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						GATGAGGGAGTTCAACATGGA	0.408													9	76					0	0	0.000274275	0	0
OR12D2	26529	broad.mit.edu	37	6	29364563	29364563	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:29364563C>T	uc003nmf.3	+	1	148	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCGTGGTTTTCCTCACCATCT	0.448													11	85					0	0	0.00136819	0	0
OR12D2	26529	broad.mit.edu	37	6	29364593	29364593	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:29364593G>A	uc003nmf.3	+	1	178	c.117G>A	c.(115-117)GGG>GGA	p.G39G		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTGTGACTGGGAATGGAGCCG	0.458													7	52					0	0	0.00198382	0	0
OR2H1	26716	broad.mit.edu	37	6	29430158	29430158	+	Silent	SNP	C	T	T	rs144363872	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:29430158C>T	uc003nmi.2	+	3	1055	c.612C>T	c.(610-612)TTC>TTT	p.F204F	OR2H1_uc003nmj.1_Silent_p.F204F|OR2H1_uc010jri.1_Silent_p.F126F	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGTCATCTTCGTGGTTGTGC	0.502													21	128					0	0	0.00278032	0	0
UBD	10537	broad.mit.edu	37	6	29524025	29524025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:29524025G>A	uc003nmo.2	-	2	354	c.130C>T	c.(130-132)CCT>TCT	p.P44S	GABBR1_uc003nmp.3_3'UTR	NM_006398	NP_006389	O15205	UBD_HUMAN	ubiquitin D	44	Ubiquitin 1.				aggresome assembly|myeloid dendritic cell differentiation|negative regulation of mitotic prometaphase|positive regulation of apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	aggresome|cytoplasm|nucleus	proteasome binding				0						TCCTGCACAGGAACCTTGGTC	0.468													12	56					0	0	0.00185496	0	0
HLA-G	3135	broad.mit.edu	37	6	29797461	29797461	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:29797461C>T	uc003nnw.2	+	5	1064	c.886C>T	c.(886-888)CTG>TTG	p.L296L	HLA-G_uc011dmb.1_Silent_p.L268L|HLA-G_uc003raj.3_Silent_p.L301L|HLA-G_uc003nnz.3_Silent_p.L204L|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_RNA|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	296	Extracellular (Potential).|Ig-like C1-type.|Alpha-3.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						GCCCCTCATGCTGAGATGGAG	0.582													21	105					0	0	0.00278032	0	0
TRIM39	56658	broad.mit.edu	37	6	30309717	30309717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:30309717C>T	uc010jrz.2	+	9	1550	c.1238C>T	c.(1237-1239)TCC>TTC	p.S413F	TRIM39_uc003npz.2_Missense_Mutation_p.S383F|TRIM39_uc003nqb.2_Missense_Mutation_p.S383F|TRIM39_uc003nqc.2_Missense_Mutation_p.S383F|TRIM39_uc010jsa.1_Intron	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	413	B30.2/SPRY.				apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						TGCCGGGACTCCGTGAGCCGA	0.602													5	33					0	0	0.000602214	0	0
MDC1	9656	broad.mit.edu	37	6	30668266	30668266	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:30668266G>A	uc003nrg.3	-	15	6686	c.6246C>T	c.(6244-6246)TCC>TCT	p.S2082S	MDC1_uc003nrf.3_Silent_p.S713S	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	2082	Required for nuclear localization (NLS2).|BRCT 2.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TCTCCAAAGGGGAGAGGACAA	0.542								Other_conserved_DNA_damage_response_genes					18	121					0	0	0.00229938	0	0
MDC1	9656	broad.mit.edu	37	6	30672849	30672849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:30672849G>A	uc003nrg.3	-	10	4551	c.4111C>T	c.(4111-4113)CCT>TCT	p.P1371S	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.P978S	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1371	Pro-rich.|Interaction with the PRKDC complex.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GGGAGCTCAGGGGCTATAGGG	0.552								Other_conserved_DNA_damage_response_genes					21	152					0	0	0.000720815	0	0
FLOT1	10211	broad.mit.edu	37	6	30708088	30708088	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:30708088C>T	uc003nrm.2	-	8	735	c.571_splice	c.e8-1	p.E191_splice	FLOT1_uc011dmr.1_Splice_Site_p.E143_splice	NM_005803	NP_005794	O75955	FLOT1_HUMAN	flotillin 1							centriolar satellite|endosome|integral to membrane|melanosome|membrane fraction					0						CTTTAGCTTCCTGTCCAAGCA	0.522													8	71					0	0	0.00307968	0	0
DDR1	780	broad.mit.edu	37	6	30857032	30857032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:30857032C>T	uc003nrr.2	+	5	501	c.242C>T	c.(241-243)CCC>CTC	p.P81L	DDR1_uc010jse.2_Missense_Mutation_p.P81L|DDR1_uc003nrq.2_Missense_Mutation_p.P81L|DDR1_uc003nrs.2_Missense_Mutation_p.P81L|DDR1_uc003nrt.2_Missense_Mutation_p.P81L|DDR1_uc011dms.1_Missense_Mutation_p.P99L|DDR1_uc011dmt.1_Missense_Mutation_p.P107L|DDR1_uc003nru.2_Missense_Mutation_p.P81L|DDR1_uc011dmu.1_Missense_Mutation_p.P81L|DDR1_uc003nrv.2_Missense_Mutation_p.P81L|DDR1_uc003nrw.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	81	Extracellular (Potential).|F5/8 type C.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	TCGGTGTTTCCCAAGGAGGAG	0.647													22	109					0	0	0.00278032	0	0
MUC21	394263	broad.mit.edu	37	6	30954473	30954473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:30954473C>T	uc003nsh.2	+	2	772	c.521C>T	c.(520-522)TCC>TTC	p.S174F	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	174	28 X 15 AA approximate tandem repeats.|Ser-rich.|10.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						AGCACAACCTCCAGTGGGGCC	0.612													15	98					0	0	0.00244969	0	0
TCF19	6941	broad.mit.edu	37	6	31130295	31130295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31130295C>T	uc003nss.2	+	4	1363	c.839C>T	c.(838-840)CCC>CTC	p.P280L	TCF19_uc003nst.2_Missense_Mutation_p.P280L	NM_001077511	NP_001070979	Q9Y242	TCF19_HUMAN	transcription factor 19	280	Pro-rich.				cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GTGAGCGCTCCCATGGCTCCC	0.612													5	49					0	0	0.00307968	0	0
BAT1	7919	broad.mit.edu	37	6	31499098	31499098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31499098G>A	uc003ntt.2	-	8	1583	c.952C>T	c.(952-954)CAC>TAC	p.H318Y	BAT1_uc003ntq.2_Missense_Mutation_p.H51Y|BAT1_uc003ntr.2_Missense_Mutation_p.H125Y|BAT1_uc003nts.2_Missense_Mutation_p.H318Y|BAT1_uc011dnn.1_Missense_Mutation_p.H240Y|BAT1_uc003ntu.2_Missense_Mutation_p.H318Y|BAT1_uc003ntv.2_Missense_Mutation_p.H318Y	NM_004640	NP_004631	Q13838	DX39B_HUMAN	HLA-B associated transcript 1	318	Helicase C-terminal.				intronless viral mRNA export from host nucleus|RNA secondary structure unwinding|spliceosome assembly	nuclear speck|spliceosomal complex|transcription export complex	ATP binding|ATP-dependent protein binding|ATP-dependent RNA helicase activity|identical protein binding|U4 snRNA binding|U6 snRNA binding				0						ATCCCACGGTGGATGGCAATG	0.527													14	68					0	0	0.000566183	0	0
LY6G6F	259215	broad.mit.edu	37	6	31675736	31675736	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31675736G>A	uc003nwa.1	+	3	471	c.471G>A	c.(469-471)GTG>GTA	p.V157V	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Silent_p.V157V	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	157	Extracellular (Potential).					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						TGGACTCTGTGACCTGGCAGG	0.617													73	189					0	0	0.00361006	0	0
LY6G6F	259215	broad.mit.edu	37	6	31677893	31677893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31677893G>A	uc003nwa.1	+	4	737	c.737G>A	c.(736-738)GGA>GAA	p.G246E	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Missense_Mutation_p.G246E	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	246	Helical; (Potential).					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						ATGGGCCAGGGAGTTGTCATC	0.622													41	277					0	0	0.00361006	0	0
LY6G6F	259215	broad.mit.edu	37	6	31677949	31677949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31677949C>T	uc003nwa.1	+	4	793	c.793C>T	c.(793-795)CCA>TCA	p.P265S	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Missense_Mutation_p.P265S	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	265	Cytoplasmic (Potential).					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						CCGTGGGGCTCCAGGCAGAGG	0.637													20	179					0	0	0.000958276	0	0
DDAH2	23564	broad.mit.edu	37	6	31696838	31696838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31696838G>A	uc003nwp.2	-	1	732	c.101C>T	c.(100-102)CCC>CTC	p.P34L	DDAH2_uc003nwq.2_Missense_Mutation_p.P34L	NM_013974	NP_039268	O95865	DDAH2_HUMAN	dimethylarginine dimethylaminohydrolase 2	34					anti-apoptosis|arginine catabolic process|citrulline metabolic process|nitric oxide biosynthetic process|nitric oxide mediated signal transduction	cytoplasm	dimethylargininase activity|protein binding				0					L-Citrulline(DB00155)	ATCCAGAGCGGGAAGGCCAGC	0.677													38	215					0	0	0.00361006	0	0
C6orf27	80737	broad.mit.edu	37	6	31735472	31735472	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31735472C>T	uc011dog.1	-	11	1801	c.1563G>A	c.(1561-1563)GTG>GTA	p.V521V	C6orf27_uc003nxd.2_Silent_p.V196V	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	521						extracellular region				ovary(3)	3						GCAGCCCATCCACGCTGAACA	0.557													35	225					0	0	0.00111076	0	0
VARS	7407	broad.mit.edu	37	6	31747781	31747781	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31747781G>A	uc003nxe.2	-	26	3498	c.3075C>T	c.(3073-3075)GTC>GTT	p.V1025V	C6orf27_uc011dog.1_5'Flank|C6orf27_uc003nxd.2_5'Flank|C6orf27_uc011doh.1_5'Flank|VARS_uc003nxf.1_5'UTR	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	1025					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	TCACCAAGTAGACATCACAGA	0.602													38	225					0	0	0.00195071	0	0
VARS	7407	broad.mit.edu	37	6	31750958	31750958	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31750958C>T	uc003nxe.2	-	14	2100	c.1677G>A	c.(1675-1677)CTG>CTA	p.L559L	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	559					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	TCTTCCCCTTCAGGTGCTGGG	0.383													14	138					0	0	0.000566183	0	0
NEU1	4758	broad.mit.edu	37	6	31827673	31827674	+	Missense_Mutation	DNP	CC	TA	TA	rs139301823	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31827673_31827674CC>TA	uc003nxq.3	-	6	1226_1227	c.1070_1071GG>TA	c.(1069-1071)CGG>CTA	p.R357L	NEU1_uc010jtg.2_RNA|NEU1_uc003nxr.3_RNA|NEU1_uc010jth.2_Missense_Mutation_p.R188L|NEU1_uc003nxs.3_3'UTR	NM_000434	NP_000425	Q99519	NEUR1_HUMAN	neuraminidase precursor	357	BNR 4.					cytoplasmic membrane-bounded vesicle|lysosomal lumen|lysosomal membrane|plasma membrane	exo-alpha-sialidase activity|protein binding			ovary(1)	1					Oseltamivir(DB00198)|Zanamivir(DB00558)	CTGTCTCTTTCCGCCATGAGGT	0.614													46	311					0	0	6.4e-05	0	0
SLC44A4	80736	broad.mit.edu	37	6	31831496	31831497	+	Silent	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31831496_31831497GG>AA	uc010jti.2	-	21	2106_2107	c.2040_2041CC>TT	c.(2038-2043)TCCCTG>TCTTTG	p.680_681SL>SL	NEU1_uc003nxq.3_5'Flank|NEU1_uc010jtg.2_5'Flank|NEU1_uc003nxr.3_5'Flank|NEU1_uc010jth.2_5'Flank|NEU1_uc003nxs.3_5'Flank	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	680_681	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	GGCCGGTCCAGGGAGCCGTTGT	0.53													6	57					0	0	6.4e-05	0	0
SLC44A4	80736	broad.mit.edu	37	6	31842599	31842599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31842599C>T	uc010jti.2	-	6	433	c.367G>A	c.(367-369)GAC>AAC	p.D123N	SLC44A4_uc011dol.1_Missense_Mutation_p.D47N|SLC44A4_uc011dom.1_Intron	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	123	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	GTCCATGGGTCCTCCGGGCAG	0.542													48	338					0	0	0.00361006	0	0
CFB	629	broad.mit.edu	37	6	31901725	31901725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31901725C>T	uc011dor.1	+	4	776	c.512C>T	c.(511-513)CCC>CTC	p.P171L	C2_uc003nyc.2_Missense_Mutation_p.P65S|C2_uc011doo.1_Intron|C2_uc011dop.1_Missense_Mutation_p.P110L|C2_uc003nye.3_Missense_Mutation_p.P233L|C2_uc003nyf.2_Missense_Mutation_p.P233L|C2_uc010jtk.2_Missense_Mutation_p.P101L|C2_uc011doq.1_Missense_Mutation_p.P204L|C2_uc003nyg.2_Missense_Mutation_p.P101L	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GCCACCAATCCCACCCAGAAG	0.597													21	132					0	0	0.00152264	0	0
RDBP	7936	broad.mit.edu	37	6	31922531	31922531	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31922531G>A	uc003nyk.2	-	7	747	c.543C>T	c.(541-543)TCC>TCT	p.S181S	RDBP_uc011dot.1_Silent_p.S151S|RDBP_uc003nyl.1_Silent_p.S121S|RDBP_uc003nym.1_Silent_p.S176S	NM_002904	NP_002895	P18615	NELFE_HUMAN	RD RNA-binding protein	181					positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	mitochondrion|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						TTCGGGGAGGGGAGGCTGAGG	0.438													45	244					0	0	0.00361006	0	0
STK19	8859	broad.mit.edu	37	6	31940079	31940079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31940079G>A	uc003nyv.2	+	2	349	c.221G>A	c.(220-222)GGA>GAA	p.G74E	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.G31E|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.G74E|STK19_uc011dox.1_Missense_Mutation_p.G31E|STK19_uc003nyw.2_Missense_Mutation_p.G74E|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	74						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						CCTGGTCTAGGAGGGACGCCC	0.607													9	75					0	0	0.000978159	0	0
STK19	8859	broad.mit.edu	37	6	31940123	31940123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:31940123G>A	uc003nyv.2	+	2	393	c.265G>A	c.(265-267)GAC>AAC	p.D89N	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.D46N|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.D89N|STK19_uc011dox.1_Missense_Mutation_p.D46N|STK19_uc003nyw.2_Missense_Mutation_p.D89N|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	89			D -> N (in a metastatic melanoma sample; somatic mutation).			nucleus	ATP binding|protein binding|protein serine/threonine kinase activity	p.D89N(2)		skin(4)	4						TGCGCCGGAAGACCCTATTTT	0.582													6	82					0	0	0.00198382	0	0
TNXB	7148	broad.mit.edu	37	6	32012952	32012952	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32012952G>A	uc003nzl.2	-	32	10954	c.10752C>T	c.(10750-10752)TTC>TTT	p.F3584F	TNXB_uc003nzg.1_Silent_p.F15F|TNXB_uc003nzh.1_Silent_p.F53F	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3631	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACTGGACCACGAAGGAATCAA	0.647													31	275					0	0	0.00222228	0	0
TNXB	7148	broad.mit.edu	37	6	32018024	32018025	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32018024_32018025CC>AA	uc003nzl.2	-	27	9385_9386	c.9183_9184GG>TT	c.(9181-9186)CTGGGG>CTTTGG	p.G3062W		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3109	Fibronectin type-III 23.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTCAGCTCCCCCAGGCGAGGCT	0.619													14	398					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32036433	32036433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32036433G>A	uc003nzl.2	-	17	6156	c.5954C>T	c.(5953-5955)CCC>CTC	p.P1985L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2067					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGGCTTGATGGGGGGCTCGGG	0.632													72	226					0	0	0.00361006	0	0
TNXB	7148	broad.mit.edu	37	6	32037356	32037356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32037356C>T	uc003nzl.2	-	15	5763	c.5561G>A	c.(5560-5562)GGC>GAC	p.G1854D		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1936	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGAGATGGGGCCCACACGCTT	0.662													40	109					0	0	0.0025221	0	0
TNXB	7148	broad.mit.edu	37	6	32037969	32037969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32037969C>T	uc003nzl.2	-	14	5415	c.5213G>A	c.(5212-5214)AGA>AAA	p.R1738K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1820	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAGGAGGAATCTGTACTTGCG	0.647													10	109					0	0	0.00185496	0	0
TNXB	7148	broad.mit.edu	37	6	32057124	32057124	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32057124C>T	uc003nzl.2	-	5	2593	c.2391G>A	c.(2389-2391)CGG>CGA	p.R797R		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	749					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGCTTGGAACCCGTGCTGTGA	0.632													32	213					0	0	0.000814825	0	0
ATF6B	1388	broad.mit.edu	37	6	32083537	32083537	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32083537G>A	uc003nzn.2	-	18	2124	c.2091C>T	c.(2089-2091)CCC>CCT	p.P697P	TNXB_uc010jts.1_Intron|ATF6B_uc003nzm.1_Intron|ATF6B_uc003nzo.2_Silent_p.P694P	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	697	Lumenal (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGAGGTAGAGGGGCTGGTGGG	0.612													36	268					0	0	0.00148497	0	0
FKBPL	63943	broad.mit.edu	37	6	32096866	32096866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32096866C>T	uc003nzr.2	-	2	962	c.692G>A	c.(691-693)CGA>CAA	p.R231Q	ATF6B_uc003nzo.2_5'Flank|ATF6B_uc003nzn.2_5'Flank|ATF6B_uc011dpg.1_5'Flank|ATF6B_uc011dph.1_5'Flank	NM_022110	NP_071393	Q9UIM3	FKBPL_HUMAN	WAF-1/CIP1 stabilizing protein 39	231	TPR 1.				response to radiation	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						TCCATAGCATCGGGCAGCTCC	0.587													39	287					0	0	0.00128727	0	0
GPSM3	63940	broad.mit.edu	37	6	32159205	32159205	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32159205T>C	uc003oay.3	-	4	814	c.421A>G	c.(421-423)AGA>GGA	p.R141G	PBX2_uc003oav.1_5'Flank|PBX2_uc003oaw.2_5'Flank|GPSM3_uc003oax.3_Missense_Mutation_p.R118G|GPSM3_uc003oaz.2_Missense_Mutation_p.R141G	NM_022107	NP_071390	Q9Y4H4	GPSM3_HUMAN	G-protein signaling modulator 3 (AGS3-like, C.	141	GoLoco 3.				signal transduction	cytoplasm	GTPase activator activity|protein binding				0						CCCTGAACTCTCAGCAGCAAC	0.647													22	194					0	0	0.00278032	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713734	32713734	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32713734G>A	uc003obx.2	+	3	556	c.498G>A	c.(496-498)AAG>AAA	p.K166K		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	166	Alpha-2.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCCTCTCCAAGAGTGATCATT	0.512													12	144					0	0	0.00136819	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32977250	32977250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:32977250C>T	uc003ocr.2	-	1	140	c.64G>A	c.(64-66)GAG>AAG	p.E22K	HLA-DOA_uc010juj.2_5'UTR|HLA-DOA_uc010jui.2_Missense_Mutation_p.E22K	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	22					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						GCCCCTGCCTCCTGCGGGCTC	0.612													5	23					0	0	0.000602214	0	0
COL11A2	1302	broad.mit.edu	37	6	33136775	33136775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:33136775C>T	uc003ocx.1	-	52	4037	c.3809G>A	c.(3808-3810)GGT>GAT	p.G1270D	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.G1184D|COL11A2_uc003ocz.1_Missense_Mutation_p.G1163D	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1270	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						ACCAGGAAAACCAACAGGACC	0.602													7	54					0	0	0.00307968	0	0
ZBTB9	221504	broad.mit.edu	37	6	33423927	33423927	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:33423927G>A	uc003oeq.2	+	2	1318	c.1050G>A	c.(1048-1050)GGG>GGA	p.G350G		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	350	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATCTTCATGGGAATGAAATCC	0.607													7	25					0	0	0.00198382	0	0
RPS10	6204	broad.mit.edu	37	6	34392871	34392871	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:34392871A>G	uc003ojm.2	-	2	348	c.128T>C	c.(127-129)CTT>CCT	p.L43P	RPS10_uc003ojn.2_Missense_Mutation_p.L43P	NM_001014	NP_001005	P46783	RS10_HUMAN	ribosomal protein S10	43					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	protein binding				0						CATGACATGAAGGTTGGGCAC	0.547													3	81					0	0	0.00024832	0	0
SNRPC	6631	broad.mit.edu	37	6	34741339	34741339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:34741339G>A	uc003ojt.1	+	6	487	c.472G>A	c.(472-474)GAC>AAC	p.D158N		NM_003093	NP_003084	P09234	RU1C_HUMAN	small nuclear ribonucleoprotein polypeptide C	158					spliceosomal snRNP assembly	Cajal body|U1 snRNP	protein homodimerization activity|single-stranded RNA binding|zinc ion binding			pancreas(1)	1						GACTCGACCAGACAGATAAGG	0.522													11	71					0	0	0.00136819	0	0
ANKS1A	23294	broad.mit.edu	37	6	34985818	34985818	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:34985818C>T	uc003ojx.3	+	11	2134	c.1992C>T	c.(1990-1992)TTC>TTT	p.F664F	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Silent_p.F204F|ANKS1A_uc010jvp.1_Intron	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	664						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CACCCTCCTTCGCCTCGGAGT	0.607													11	80					0	0	0.000978159	0	0
SCUBE3	222663	broad.mit.edu	37	6	35209380	35209380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:35209380C>T	uc003okf.1	+	11	1262	c.1256C>T	c.(1255-1257)TCT>TTT	p.S419F	SCUBE3_uc003okg.1_Missense_Mutation_p.S418F|SCUBE3_uc003okh.1_Missense_Mutation_p.S306F	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	419					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						TGCAACCGGTCTGGCAAGAAG	0.582											OREG0017372	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	79					0	0	0.000274275	0	0
TULP1	7287	broad.mit.edu	37	6	35476999	35476999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:35476999C>T	uc003okv.3	-	8	821	c.809G>A	c.(808-810)GGA>GAA	p.G270E	TULP1_uc003okw.3_Missense_Mutation_p.G217E	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	270					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						TTTGCCTTTTCCTTTGGCTTT	0.602													36	268					0	0	0.00148497	0	0
TULP1	7287	broad.mit.edu	37	6	35477063	35477063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:35477063C>T	uc003okv.3	-	8	757	c.745G>A	c.(745-747)GAA>AAA	p.E249K	TULP1_uc003okw.3_Missense_Mutation_p.E196K	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	249	Poly-Glu.				dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						TCCTCTTCTTCCTCCTTCCTC	0.488													52	329					0	0	0.00361006	0	0
FKBP5	2289	broad.mit.edu	37	6	35565094	35565094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:35565094G>A	uc011dte.1	-	6	799	c.596C>T	c.(595-597)CCA>CTA	p.P199L	FKBP5_uc003okx.2_Missense_Mutation_p.P199L|FKBP5_uc011dtf.1_Missense_Mutation_p.P20L|FKBP5_uc003oky.2_Missense_Mutation_p.P199L|FKBP5_uc003okz.2_Missense_Mutation_p.P199L	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	199	PPIase FKBP-type 2.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						AATTCCAATTGGAATGTCGTG	0.483													10	143					0	0	0.000978159	0	0
SLC26A8	116369	broad.mit.edu	37	6	35911850	35911850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:35911850G>A	uc003olm.2	-	20	2851	c.2740C>T	c.(2740-2742)CCC>TCC	p.P914S	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.P496S|SLC26A8_uc003oln.2_Missense_Mutation_p.P914S|SLC26A8_uc003oll.2_Missense_Mutation_p.P809S	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	914	Interaction with RACGAP1.|Cytoplasmic (Potential).			P->S: Not a cause of male infertility.	cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CTAGATTTGGGGTTGGGCTCC	0.572													12	83					0	0	0.00136819	0	0
MAPK14	1432	broad.mit.edu	37	6	36027100	36027100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:36027100G>A	uc003olp.2	+	3	762	c.281G>A	c.(280-282)AGG>AAG	p.R94K	MAPK14_uc011dth.1_Missense_Mutation_p.R94K|MAPK14_uc003olo.2_Missense_Mutation_p.R94K|MAPK14_uc003olq.2_Missense_Mutation_p.R94K|MAPK14_uc003olr.2_Missense_Mutation_p.R94K|MAPK14_uc011dti.1_Missense_Mutation_p.R17K	NM_001315	NP_001306	Q16539	MK14_HUMAN	mitogen-activated protein kinase 14 isoform 1	94	Protein kinase.				activation of MAPK activity|cellular component movement|cellular response to ionizing radiation|chemotaxis|innate immune response|mRNA metabolic process|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of muscle cell differentiation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|signal transduction in response to DNA damage|stress-activated MAPK cascade|stress-induced premature senescence|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|MAP kinase kinase activity|protein binding			ovary(2)|stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	6						ACACCTGCAAGGTCTCTGGAG	0.338													37	90					0	0	0.00321405	0	0
KCTD20	222658	broad.mit.edu	37	6	36449483	36449483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:36449483C>T	uc003ome.2	+	6	1194	c.803C>T	c.(802-804)TCT>TTT	p.S268F	KCTD20_uc011dtm.1_Missense_Mutation_p.S123F|KCTD20_uc011dtn.1_Missense_Mutation_p.S22F|KCTD20_uc010jwk.2_Missense_Mutation_p.S102F|KCTD20_uc011dto.1_Missense_Mutation_p.S22F	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	268						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						GATGAGGATTCTGTGGACTGG	0.502													10	56					0	0	0.00185496	0	0
SFRS3	6428	broad.mit.edu	37	6	36566732	36566732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:36566732C>T	uc003omj.2	+	3	484	c.313C>T	c.(313-315)CGT>TGT	p.R105C	SFRS3_uc003omk.2_RNA|SFRS3_uc011dtp.1_Missense_Mutation_p.R105C	NM_003017	NP_003008	P84103	SRSF3_HUMAN	splicing factor, arginine/serine-rich 3	105	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						AGATGATTATCGTAGGAGGAG	0.488			T	BCL6	follicular lymphoma								18	107					0	0	0.00121646	0	0
FGD2	221472	broad.mit.edu	37	6	36995831	36995831	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:36995831C>T	uc010jwp.1	+	16	2031	c.1860C>T	c.(1858-1860)ACC>ACT	p.T620T	FGD2_uc003ong.2_Silent_p.T342T|FGD2_uc011dtv.1_Silent_p.T248T|FGD2_uc003onj.1_3'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	620	PH 2.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						AGCTCTACACCTTCAAGGCCG	0.677													8	34					0	0	0.000274275	0	0
FTSJD2	23070	broad.mit.edu	37	6	37414221	37414221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:37414221C>T	uc003ons.2	+	4	693	c.440C>T	c.(439-441)CCA>CTA	p.P147L	FTSJD2_uc010jwu.2_Missense_Mutation_p.P147L	NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	147					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CGAGATGAGCCAGAGGTAAGT	0.493													37	144					0	0	0.00111076	0	0
MDGA1	266727	broad.mit.edu	37	6	37606016	37606016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:37606016C>T	uc003onu.1	-	16	3920	c.2741G>A	c.(2740-2742)GGG>GAG	p.G914E	MDGA1_uc003onv.1_Missense_Mutation_p.G183E	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	914	MAM.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						GGGACACTCCCCCTTCTTCAG	0.592													4	36					0	0	0.000602214	0	0
DNAH8	1769	broad.mit.edu	37	6	38702357	38702357	+	Missense_Mutation	SNP	C	T	T	rs145773185		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:38702357C>T	uc003ooe.1	+	3	667	c.67C>T	c.(67-69)CGT>TGT	p.R23C	DNAH8_uc003ood.1_Missense_Mutation_p.R240C	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATTTTTTGTTCGTTGCCGTAA	0.318													16	138					0	0	0.00074312	0	0
DNAH8	1769	broad.mit.edu	37	6	38813489	38813489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:38813489G>A	uc003ooe.1	+	34	4934	c.4334G>A	c.(4333-4335)GGA>GAA	p.G1445E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACCGAATCGGGAGAAATTATC	0.393													10	60					0	0	0.000673444	0	0
DNAH8	1769	broad.mit.edu	37	6	38830154	38830154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:38830154G>A	uc003ooe.1	+	42	6179	c.5579G>A	c.(5578-5580)GGA>GAA	p.G1860E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAAGACATGGGAAGGTGTTTG	0.463													72	74					0	0	0.00361006	0	0
DNAH8	1769	broad.mit.edu	37	6	38854576	38854576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:38854576G>A	uc003ooe.1	+	55	8218	c.7618G>A	c.(7618-7620)GAG>AAG	p.E2540K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GATAACTAATGAGATTGTGCG	0.348													7	77					0	0	0.00307968	0	0
DNAH8	1769	broad.mit.edu	37	6	38950159	38950159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:38950159C>T	uc003ooe.1	+	84	12821	c.12221C>T	c.(12220-12222)CCC>CTC	p.P4074L	DNAH8_uc003oog.1_Missense_Mutation_p.P523L	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGGAATATTCCCTACGAATTC	0.353													19	153					0	0	0.00121646	0	0
GLP1R	2740	broad.mit.edu	37	6	39024171	39024171	+	Splice_Site	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:39024171A>C	uc003ooj.3	+	2	139	c.79_splice	c.e2-2	p.G27_splice	GLP1R_uc003ooh.2_Splice_Site|GLP1R_uc003ooi.2_Splice_Site	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor						activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	CCCTCCCCCCAGGGTGCCACT	0.607													4	14					0	0	0.00116845	0	0
C6orf64	55776	broad.mit.edu	37	6	39073498	39073498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:39073498G>A	uc003ook.1	-	2	262	c.262C>T	c.(262-264)CCT>TCT	p.P88S	C6orf64_uc011dty.1_RNA|C6orf64_uc003oom.1_RNA	NM_018322	NP_060792	Q9NPB0	CF064_HUMAN	hypothetical protein LOC55776	88						integral to membrane					0						GACGGCAGAGGAATGGCTGTG	0.498													19	85					0	0	0.00332997	0	0
KIF6	221458	broad.mit.edu	37	6	39607458	39607459	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:39607458_39607459CC>TT	uc003oot.2	-	4	421_422	c.326_327GG>AA	c.(325-327)GGG>GAA	p.G109E	KIF6_uc010jxa.1_5'UTR|KIF6_uc011dua.1_Missense_Mutation_p.G109E|KIF6_uc010jxb.1_Missense_Mutation_p.G109E	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	109	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						GCTCTGCACCCCCTGTGATAGT	0.421													10	37					0	0	6.4e-05	0	0
KIF6	221458	broad.mit.edu	37	6	39682520	39682520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:39682520C>T	uc003oot.2	-	3	294	c.199G>A	c.(199-201)GAT>AAT	p.D67N	KIF6_uc011dua.1_Missense_Mutation_p.D67N|KIF6_uc010jxb.1_Missense_Mutation_p.D67N|KIF6_uc003oou.2_RNA	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	67	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						TGGTTTGCATCCTGATCAAAA	0.353													5	47					0	0	0.00116845	0	0
LRFN2	57497	broad.mit.edu	37	6	40399545	40399545	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:40399545G>A	uc003oph.1	-	2	1773	c.1308C>T	c.(1306-1308)GCC>GCT	p.A436A		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	436	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					ACTTGACCAGGGCCGAGGTGG	0.602													10	52					0	0	0.000673444	0	0
LRFN2	57497	broad.mit.edu	37	6	40399678	40399678	+	Missense_Mutation	SNP	G	A	A	rs143225218		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:40399678G>A	uc003oph.1	-	2	1640	c.1175C>T	c.(1174-1176)CCC>CTC	p.P392L		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	392	Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GCGGGACTTGGGGGGTGCAGT	0.667													8	46					0	0	0.000673444	0	0
LRFN2	57497	broad.mit.edu	37	6	40400047	40400048	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:40400047_40400048CC>TT	uc003oph.1	-	2	1270_1271	c.805_806GG>AA	c.(805-807)GGG>AAG	p.G269K		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	269	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CTTGAGGCCCCCTGGGGAGCCA	0.584													7	33					0	0	6.4e-05	0	0
APOBEC2	10930	broad.mit.edu	37	6	41029481	41029481	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:41029481G>A	uc003opl.2	+	2	693	c.546G>A	c.(544-546)CAG>CAA	p.Q182Q	UNC5CL_uc010jxe.1_Intron|APOBEC2_uc010jxf.2_RNA	NM_006789	NP_006780	Q9Y235	ABEC2_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	182					DNA demethylation|mRNA processing		cytidine deaminase activity|RNA binding|zinc ion binding				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					TGAAGCCCCAGGACTTCGAAT	0.527													8	77					0	0	0.000442599	0	0
FRS3	10817	broad.mit.edu	37	6	41738703	41738703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:41738703G>A	uc003orc.1	-	7	1377	c.1133C>T	c.(1132-1134)GCC>GTC	p.A378V		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	378					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GCGGATGGCGGCCCGGGTGCT	0.672													29	40					0	0	0.00283554	0	0
UBR2	23304	broad.mit.edu	37	6	42627584	42627584	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:42627584C>T	uc011dur.1	+	30	3433	c.3433C>T	c.(3433-3435)CAA>TAA	p.Q1145*	UBR2_uc011dus.1_Nonsense_Mutation_p.Q790*|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	1145	RING-type; atypical.				cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			TAAATTTATTCAAGATCCAGG	0.358													6	38					0	0	0.00198382	0	0
C6orf153	88745	broad.mit.edu	37	6	42992834	42992834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:42992834C>T	uc003otp.1	+	2	250	c.242C>T	c.(241-243)CCA>CTA	p.P81L		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	81					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			GCTTCTAGACCACCTATCCAA	0.438													16	40					0	0	0.00395357	0	0
PTK7	5754	broad.mit.edu	37	6	43096813	43096813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:43096813C>T	uc003oub.1	+	2	376	c.178C>T	c.(178-180)CCG>TCG	p.P60S	PTK7_uc003ouc.1_Missense_Mutation_p.P60S|PTK7_uc003oud.1_Missense_Mutation_p.P60S|PTK7_uc003oue.1_Missense_Mutation_p.P60S|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.P68S|PTK7_uc003oua.2_Missense_Mutation_p.P60S	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	60	Ig-like C2-type 1.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GGCTCCGGGCCCGGTACATGT	0.657													11	29					0	0	0.000978159	0	0
PTK7	5754	broad.mit.edu	37	6	43109755	43109755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:43109755C>T	uc003oub.1	+	12	2053	c.1855C>T	c.(1855-1857)CCC>TCC	p.P619S	PTK7_uc003ouc.1_Missense_Mutation_p.P619S|PTK7_uc003oud.1_Missense_Mutation_p.P579S|PTK7_uc003oue.1_Missense_Mutation_p.P489S|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.P627S|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	619	Ig-like C2-type 7.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			CCAGGGGGACCCCAAGCCGCT	0.597													7	16					0	0	0.00198382	0	0
CUL9	23113	broad.mit.edu	37	6	43188298	43188298	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:43188298C>T	uc003ouk.2	+	32	6459	c.6384C>T	c.(6382-6384)TTC>TTT	p.F2128F	CUL9_uc003oul.2_Silent_p.F2100F|CUL9_uc010jyk.2_Silent_p.F1280F|CUL9_uc003oun.2_5'UTR	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	2128					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CCGGAGCCTTCATTCGTGCCA	0.587													27	159					0	0	0.00127121	0	0
ZNF318	24149	broad.mit.edu	37	6	43305007	43305007	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:43305007G>A	uc003oux.2	-	10	6807	c.6729C>T	c.(6727-6729)TCC>TCT	p.S2243S	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	2243					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CCCTTGGAGGGGACCTTGACA	0.488													16	33					0	0	0.000958276	0	0
ZNF318	24149	broad.mit.edu	37	6	43306630	43306630	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:43306630A>G	uc003oux.2	-	10	5184	c.5106T>C	c.(5104-5106)AGT>AGC	p.S1702S	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1702					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TCTGGAAGGAACTAGAGGTCC	0.502													5	47					0	0	0.00116845	0	0
ZNF318	24149	broad.mit.edu	37	6	43307388	43307388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:43307388G>A	uc003oux.2	-	10	4426	c.4348C>T	c.(4348-4350)CCA>TCA	p.P1450S	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1450	Pro-rich.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			ggaggtggtggaggtgggggt	0.358													8	29					0	0	0.00307968	0	0
ZNF318	24149	broad.mit.edu	37	6	43308574	43308574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:43308574G>A	uc003oux.2	-	9	3527	c.3449C>T	c.(3448-3450)TCT>TTT	p.S1150F	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1150	Matrin-type 2.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TTGCTCCCCAGAAATTGGATC	0.413													41	51					0	0	0.00321405	0	0
ZNF318	24149	broad.mit.edu	37	6	43309940	43309940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:43309940G>A	uc003oux.2	-	8	3364	c.3286C>T	c.(3286-3288)CCC>TCC	p.P1096S	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1096	Matrin-type 1.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CTGTTGTAGGGATCCAGTGTC	0.458													13	75					0	0	0.000422831	0	0
TCTE1	202500	broad.mit.edu	37	6	44250045	44250045	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:44250045G>A	uc003oxi.2	-	4	1254	c.1098C>T	c.(1096-1098)TCC>TCT	p.S366S	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	366	LRR 3.							p.S366F(1)		ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GTAGGTTGAGGGAAATGAGGT	0.612													46	121					0	0	0.00361006	0	0
SUPT3H	8464	broad.mit.edu	37	6	44922332	44922332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:44922332G>A	uc003oxo.2	-	10	944	c.626C>T	c.(625-627)TCC>TTC	p.S209F	SUPT3H_uc003oxn.1_Missense_Mutation_p.S198F|SUPT3H_uc011dvv.1_Missense_Mutation_p.S46F|SUPT3H_uc003oxp.2_Missense_Mutation_p.S198F|SUPT3H_uc011dvw.1_Missense_Mutation_p.S112F	NM_181356	NP_852001	O75486	SUPT3_HUMAN	suppressor of Ty 3 homolog isoform 2	280					histone deubiquitination|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	STAGA complex|transcription factor TFTC complex	DNA binding|transcription coactivator activity			ovary(2)|breast(1)	3						TCGAAATTTGGAAGCTTTTTT	0.333													20	124					0	0	0.00188189	0	0
ENPP5	59084	broad.mit.edu	37	6	46135445	46135445	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:46135445G>A	uc003oxz.1	-	2	763	c.555C>T	c.(553-555)CTC>CTT	p.L185L	ENPP5_uc003oya.1_Silent_p.L185L|ENPP5_uc011dvz.1_Silent_p.L91L|ENPP5_uc010jzc.1_Silent_p.L185L	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	185						extracellular region|integral to membrane	hydrolase activity				0						CTTCCCAATAGAGAAGACCAA	0.418													14	81					0	0	0.00244969	0	0
SLC25A27	9481	broad.mit.edu	37	6	46630223	46630223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:46630223G>A	uc003oyh.2	+	4	745	c.494G>A	c.(493-495)GGA>GAA	p.G165E	SLC25A27_uc011dwb.1_Missense_Mutation_p.G165E|SLC25A27_uc003oyg.2_Missense_Mutation_p.G165E|SLC25A27_uc011dwc.1_Missense_Mutation_p.G79E|SLC25A27_uc003oyi.2_Missense_Mutation_p.G95E	NM_004277	NP_004268	O95847	UCP4_HUMAN	solute carrier family 25, member 27	165	Solcar 2.				generation of precursor metabolites and energy|transport	integral to membrane|mitochondrial inner membrane					0			Lung(136;0.192)			AAACTGGAAGGAAAACCATTG	0.403													9	61					0	0	0.000274275	0	0
PLA2G7	7941	broad.mit.edu	37	6	46682279	46682279	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:46682279T>C	uc010jzf.2	-	5	657	c.388A>G	c.(388-390)ACT>GCT	p.T130A	PLA2G7_uc010jzg.1_Missense_Mutation_p.T130A|PLA2G7_uc011dwd.1_Missense_Mutation_p.T85A|PLA2G7_uc011dwe.1_Missense_Mutation_p.T3A	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	130					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			TTTGCAGGAGTTGTCATTGAA	0.393													12	99					0	0	0.00136819	0	0
GPR116	221395	broad.mit.edu	37	6	46826049	46826049	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:46826049G>A	uc003oyo.3	-	17	3880	c.3591C>T	c.(3589-3591)ATC>ATT	p.I1197I	GPR116_uc011dwj.1_Silent_p.I752I|GPR116_uc011dwk.1_Silent_p.I626I|GPR116_uc003oyp.3_Silent_p.I1055I|GPR116_uc003oyq.3_Silent_p.I1197I|GPR116_uc010jzi.1_Silent_p.I869I	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1197	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AAGGCCTCAGGATCTTGGTGA	0.532													9	84					0	0	0.000978159	0	0
GPR116	221395	broad.mit.edu	37	6	46851844	46851844	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:46851844G>A	uc003oyo.3	-	5	782	c.493C>T	c.(493-495)CTG>TTG	p.L165L	GPR116_uc003oyp.3_Silent_p.L165L|GPR116_uc003oyq.3_Silent_p.L165L|GPR116_uc003oyr.2_Silent_p.L165L	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	165	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TCCTGAAGCAGGCAAAAAGGT	0.378													12	83					0	0	0.00316338	0	0
GPR116	221395	broad.mit.edu	37	6	46852000	46852000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:46852000G>A	uc003oyo.3	-	5	626	c.337C>T	c.(337-339)CCT>TCT	p.P113S	GPR116_uc003oyp.3_Missense_Mutation_p.P113S|GPR116_uc003oyq.3_Missense_Mutation_p.P113S|GPR116_uc003oyr.2_Missense_Mutation_p.P113S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	113	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TTTCCAGCAGGTCTGCAGACT	0.463													14	51					0	0	0.00316338	0	0
GPR116	221395	broad.mit.edu	37	6	46874485	46874486	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:46874485_46874486CC>AT	uc003oyo.3	-	2	303_304	c.14_15GG>AT	c.(13-15)AGG>AAT	p.R5N	GPR116_uc003oyp.3_Missense_Mutation_p.R5N|GPR116_uc003oyq.3_Missense_Mutation_p.R5N|GPR116_uc003oyr.2_Missense_Mutation_p.R5N|uc003oys.2_Intron	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	5					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AAGTGGTTCTCCTTGGGGATTT	0.361													21	86					0	0	6.4e-05	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47251714	47251715	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47251714_47251715GG>AA	uc003oyv.2	-	3	1635_1636	c.1202_1203CC>TT	c.(1201-1203)ACC>ATT	p.T401I		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	401	Cytoplasmic (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			CCCGGTTCTGGGTTGGAGTCAT	0.525													10	68					0	0	6.4e-05	0	0
CD2AP	23607	broad.mit.edu	37	6	47544323	47544323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47544323G>A	uc003oyw.2	+	7	1249	c.793G>A	c.(793-795)GAA>AAA	p.E265K		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	265					cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			AACAGATACCGAAGGTAAAAT	0.323													31	225					0	0	0.0024448	0	0
GPR111	222611	broad.mit.edu	37	6	47647918	47647918	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47647918T>C	uc010jzj.1	+	5	584	c.583T>C	c.(583-585)TCT>CCT	p.S195P	GPR111_uc010jzk.1_Missense_Mutation_p.S127P|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	195	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CACAGATCTGTCTTGTGTAAT	0.383													10	89					0	0	0.000978159	0	0
GPR111	222611	broad.mit.edu	37	6	47649301	47649301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47649301C>T	uc010jzj.1	+	6	1007	c.1006C>T	c.(1006-1008)CCT>TCT	p.P336S	GPR111_uc010jzk.1_Missense_Mutation_p.P268S|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	336	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GGTGCCTTCCCCTTCTCAGGT	0.418													19	102					0	0	0.00152264	0	0
GPR111	222611	broad.mit.edu	37	6	47650089	47650089	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47650089G>A	uc010jzj.1	+	6	1795	c.1794G>A	c.(1792-1794)TGG>TGA	p.W598*	GPR111_uc010jzk.1_Nonsense_Mutation_p.W530*|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	598	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GGCTCAACTGGGACATGACCA	0.547													16	19					0	0	0.000566183	0	0
OPN5	221391	broad.mit.edu	37	6	47749898	47749898	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47749898G>A	uc003ozc.2	+	1	101	c.96G>A	c.(94-96)GCG>GCA	p.A32A		NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	32	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						CTTGGGAAGCGGATTTAGTGG	0.443													10	65					0	0	0.000673444	0	0
OPN5	221391	broad.mit.edu	37	6	47754269	47754269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47754269G>A	uc003ozc.2	+	2	154	c.149G>A	c.(148-150)GGA>GAA	p.G50E	OPN5_uc003ozd.2_5'Flank	NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	50	Helical; Name=1; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						TCCACATTTGGAAATGGATAT	0.358													9	102					0	0	0.000274275	0	0
OPN5	221391	broad.mit.edu	37	6	47776108	47776108	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47776108G>A	uc003ozc.2	+	5	980	c.975G>A	c.(973-975)AAG>AAA	p.K325K	OPN5_uc003ozd.2_Silent_p.K160K	NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	325	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						AAGCAACCAAGAAGAAGTCTC	0.413													13	92					0	0	0.00244969	0	0
C6orf138	442213	broad.mit.edu	37	6	47846101	47846101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47846101C>T	uc011dwm.1	-	3	2513	c.2428G>A	c.(2428-2430)GAG>AAG	p.E810K	C6orf138_uc011dwn.1_Missense_Mutation_p.E574K	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	827						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						TCCTCTCTCTCCTTTCGCTTG	0.413													9	83					0	0	0.000978159	0	0
C6orf138	442213	broad.mit.edu	37	6	47846496	47846496	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47846496A>C	uc011dwm.1	-	3	2118	c.2033T>G	c.(2032-2034)ATT>AGT	p.I678S	C6orf138_uc011dwn.1_Missense_Mutation_p.I442S	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	695	Helical; (Potential).					integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						GCCCAGCTCAATTGAGGTGAC	0.453													3	19					0	0	6.4e-05	0	0
C6orf138	442213	broad.mit.edu	37	6	47846657	47846657	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:47846657G>A	uc011dwm.1	-	3	1957	c.1872C>T	c.(1870-1872)ATC>ATT	p.I624I	C6orf138_uc011dwn.1_Silent_p.I388I	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	641						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						GGTTGAACACGATGAATCGGA	0.483													8	81					0	0	0.000274275	0	0
C6orf138	442213	broad.mit.edu	37	6	48036002	48036002	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:48036002C>T	uc011dwm.1	-	1	424	c.339G>A	c.(337-339)GGG>GGA	p.G113G	C6orf138_uc011dwn.1_Intron|C6orf138_uc003ozf.2_Silent_p.G130G	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	130						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						TCTGCAGGATCCCCTCAGCCT	0.512													12	105					0	0	0.00244969	0	0
MUT	4594	broad.mit.edu	37	6	49425457	49425457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:49425457G>A	uc003ozg.3	-	3	955	c.700C>T	c.(700-702)CCT>TCT	p.P234S		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	234					fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGTTCTGGAGGAAAAATGTAT	0.323													10	75					0	0	0.000442599	0	0
RHAG	6005	broad.mit.edu	37	6	49582466	49582466	+	Silent	SNP	G	A	A	rs151209252		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:49582466G>A	uc003ozk.3	-	5	803	c.741C>T	c.(739-741)CTC>CTT	p.L247L	RHAG_uc010jzl.2_Silent_p.L247L|RHAG_uc010jzm.2_Silent_p.L247L	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	247	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					CACAGGCAGCGAGAGAGAAGT	0.527													15	73					0	0	0.00316338	0	0
RHAG	6005	broad.mit.edu	37	6	49583458	49583458	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:49583458C>T	uc003ozk.3	-	4	581	c.519G>A	c.(517-519)ACG>ACA	p.T173T	RHAG_uc010jzl.2_Silent_p.T173T|RHAG_uc010jzm.2_Silent_p.T173T	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	173	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					AGGCATGGATCGTCATTGATG	0.458													11	61					0	0	0.000978159	0	0
RHAG	6005	broad.mit.edu	37	6	49604504	49604504	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:49604504T>C	uc003ozk.3	-	1	84	c.22A>G	c.(22-24)ATG>GTG	p.M8V	RHAG_uc010jzl.2_Missense_Mutation_p.M8V|RHAG_uc010jzm.2_Missense_Mutation_p.M8V	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	8	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					ACTATAGCCATGAGAGGGAAT	0.448													8	67					0	0	0.000274275	0	0
CRISP3	10321	broad.mit.edu	37	6	49698930	49698930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:49698930C>T	uc003ozs.2	-	7	571	c.556G>A	c.(556-558)GAA>AAA	p.E186K		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	186					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			GCTCCTTGTTCATAAGGGACA	0.328													24	125					0	0	0.00395357	0	0
TFAP2B	7021	broad.mit.edu	37	6	50803776	50803776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:50803776C>T	uc003pag.2	+	4	770	c.604C>T	c.(604-606)CCA>TCA	p.P202S		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	202					nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					CTTTCTAGTTCCAGTTCCTCC	0.493													18	147					0	0	0.000958276	0	0
PKHD1	5314	broad.mit.edu	37	6	51712650	51712650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:51712650G>A	uc003pah.1	-	50	8306	c.8030C>T	c.(8029-8031)CCA>CTA	p.P2677L	PKHD1_uc010jzn.1_Missense_Mutation_p.P660L|PKHD1_uc003pai.2_Missense_Mutation_p.P2677L	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2677	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TGGAAGAAATGGAAAAGACAG	0.483													10	68					0	0	0.000673444	0	0
PKHD1	5314	broad.mit.edu	37	6	51907681	51907681	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:51907681C>A	uc003pah.1	-	27	3349	c.3073G>T	c.(3073-3075)GAG>TAG	p.E1025*	PKHD1_uc003pai.2_Nonsense_Mutation_p.E1025*	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1025	IPT/TIG 5.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CTGGAAGGCTCCACCATATCC	0.488													14	24					1.02788e-11	2.88347e-11	0.000566183	1	0
IL17A	3605	broad.mit.edu	37	6	52052459	52052459	+	Missense_Mutation	SNP	G	A	A	rs144233360	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:52052459G>A	uc003pak.1	+	2	131	c.86G>A	c.(85-87)CGA>CAA	p.R29Q		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	29					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					ACAATCCCACGAAATCCAGGA	0.483													18	106					0	0	0.00121646	0	0
MCM3	4172	broad.mit.edu	37	6	52144289	52144289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:52144289G>A	uc003pan.1	-	5	750	c.640C>T	c.(640-642)CCC>TCC	p.P214S	MCM3_uc011dwu.1_Missense_Mutation_p.P168S	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	214					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding	p.L213_P214>LS(1)		ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					ACAGAGCGGGGGAGCTGGCCG	0.562													13	94					0	0	0.00136819	0	0
KLHL31	401265	broad.mit.edu	37	6	53517009	53517009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:53517009C>T	uc003pcb.3	-	3	1433	c.1292G>A	c.(1291-1293)GGA>GAA	p.G431E	uc003pcc.1_Missense_Mutation_p.S134F	NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	431	Kelch 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					GGCCAGGCTTCCTTCTGCGTT	0.672													7	38					0	0	0.00307968	0	0
LRRC1	55227	broad.mit.edu	37	6	53785519	53785519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:53785519G>A	uc003pcd.1	+	13	1653	c.1376G>A	c.(1375-1377)CGA>CAA	p.R459Q		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	459						cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		AGTGCGATCCGATTTGTGGAG	0.453													18	24					0	0	0.000958276	0	0
TINAG	27283	broad.mit.edu	37	6	54185388	54185388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:54185388G>A	uc003pcj.2	+	2	513	c.367G>A	c.(367-369)GAT>AAT	p.D123N	TINAG_uc003pci.2_Missense_Mutation_p.D123N|TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	123					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			TTGCTTCAAAGATGGTCAACA	0.313													16	117					0	0	0.00152264	0	0
TINAG	27283	broad.mit.edu	37	6	54186101	54186101	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:54186101C>T	uc003pcj.2	+	3	572	c.426C>T	c.(424-426)TGC>TGT	p.C142C	TINAG_uc003pci.2_3'UTR|TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	142					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GCAGCACATGCTCAGGACAGC	0.353													11	48					0	0	0.00136819	0	0
FAM83B	222584	broad.mit.edu	37	6	54791295	54791295	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:54791295A>G	uc003pck.2	+	3	687	c.571A>G	c.(571-573)ATG>GTG	p.M191V		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	191										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTTTCTAAATATGACTGAGAA	0.343													33	66					0	0	0.0024448	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039502	55039502	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:55039502C>T	uc003pcl.2	+	1	432	c.117C>T	c.(115-117)TTC>TTT	p.F39F	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	39	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ACGAGGAATTCCTGCGGTACC	0.542													16	35					0	0	0.00074312	0	0
HCRTR2	3062	broad.mit.edu	37	6	55113544	55113544	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:55113544A>T	uc003pcl.2	+	2	646	c.331A>T	c.(331-333)ACA>TCA	p.T111S	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.T46S	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	111	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCTTCCAGCCACACTGGTCGT	0.453													16	97					0	0	0.000566183	0	0
GFRAL	389400	broad.mit.edu	37	6	55196626	55196626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:55196626G>A	uc003pcm.1	+	2	222	c.136G>A	c.(136-138)GAA>AAA	p.E46K		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	46	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GAGAGTAATGGAAGATGCCTG	0.318													7	39					0	0	0.000442599	0	0
GFRAL	389400	broad.mit.edu	37	6	55264064	55264064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:55264064C>T	uc003pcm.1	+	7	1125	c.1039C>T	c.(1039-1041)CCC>TCC	p.P347S		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	347	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ATTTCATTCCCCCTTCAATGG	0.289													8	37					0	0	0.00307968	0	0
BMP5	653	broad.mit.edu	37	6	55625330	55625330	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:55625330A>T	uc003pcq.2	-	5	1741	c.1029T>A	c.(1027-1029)GAT>GAA	p.D343E	BMP5_uc011dxf.1_Missense_Mutation_p.D343E	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	343					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TTGTGTTATAATCTGAAGATA	0.358													8	14					0	0	0.00307968	0	0
BMP5	653	broad.mit.edu	37	6	55638866	55638866	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:55638866G>A	uc003pcq.2	-	4	1720	c.1008C>T	c.(1006-1008)TCC>TCT	p.S336S	BMP5_uc011dxf.1_Silent_p.S336S	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	336					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TGGACATTCTGGAGGAGTCCT	0.448													14	20					0	0	0.00316338	0	0
COL21A1	81578	broad.mit.edu	37	6	55990387	55990387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:55990387G>A	uc003pcs.2	-	14	1860	c.1628C>T	c.(1627-1629)TCA>TTA	p.S543L	COL21A1_uc010jzz.2_5'Flank|COL21A1_uc011dxg.1_5'Flank|COL21A1_uc011dxh.1_5'Flank|COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.S543L|COL21A1_uc003pcu.1_Missense_Mutation_p.S540L	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	543	Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			AAATCCAGGTGATCCTTTGTC	0.284													11	41					0	0	0.00244969	0	0
COL21A1	81578	broad.mit.edu	37	6	56021727	56021727	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:56021727C>T	uc003pcs.2	-	10	1624	c.1392G>A	c.(1390-1392)GGG>GGA	p.G464G	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Silent_p.G464G|COL21A1_uc003pcu.1_Silent_p.G461G	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	464	Collagen-like 1.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			AGCCAGGGTTCCCAGGCAGTC	0.443													4	10					0	0	0.00024832	0	0
COL21A1	81578	broad.mit.edu	37	6	56035891	56035891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:56035891G>A	uc003pcs.2	-	4	908	c.676C>T	c.(676-678)CGT>TGT	p.R226C	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.R226C|COL21A1_uc003pcu.1_Missense_Mutation_p.R226C	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	226					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTTTCATCACGAGCTGCCACT	0.308													48	115					0	0	0.00361006	0	0
LGSN	51557	broad.mit.edu	37	6	63990034	63990034	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:63990034C>T	uc003peh.2	-	4	1456	c.1422G>A	c.(1420-1422)CAG>CAA	p.Q474Q	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	474					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	CTCCTAGAGCCTGTCTCAGGC	0.393													19	73					0	0	0.00121646	0	0
EYS	346007	broad.mit.edu	37	6	66200546	66200546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:66200546C>T	uc011dxu.1	-	5	1341	c.803G>A	c.(802-804)GGA>GAA	p.G268E	EYS_uc003peq.2_Missense_Mutation_p.G268E|EYS_uc003per.1_Missense_Mutation_p.G268E|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	268	EGF-like 3.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						GCTGCAGTTTCCATGGAAACA	0.299													5	51					0	0	0.00307968	0	0
EYS	346007	broad.mit.edu	37	6	66200553	66200553	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:66200553A>T	uc011dxu.1	-	5	1334	c.796T>A	c.(796-798)TTC>ATC	p.F266I	EYS_uc003peq.2_Missense_Mutation_p.F266I|EYS_uc003per.1_Missense_Mutation_p.F266I|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	266	EGF-like 3.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						TTTCCATGGAAACAGACATGT	0.299													21	42					0	0	0.000878237	0	0
BAI3	577	broad.mit.edu	37	6	69758097	69758097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:69758097C>T	uc003pev.3	+	14	2576	c.2128C>T	c.(2128-2130)CCT>TCT	p.P710S	BAI3_uc010kak.2_Missense_Mutation_p.P710S	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	710	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCAGAAGCTTCCTGCAGCCTC	0.358													25	102					0	0	0.000720815	0	0
COL19A1	1310	broad.mit.edu	37	6	70890372	70890372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:70890372G>A	uc003pfc.1	+	44	2849	c.2732G>A	c.(2731-2733)GGA>GAA	p.G911E		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	911	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GGACCTGTTGGAGATATAGGT	0.393													5	29					0	0	0.000602214	0	0
COL9A1	1297	broad.mit.edu	37	6	70961998	70961998	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:70961998C>T	uc003pfg.3	-	27	1944	c.1785G>A	c.(1783-1785)GGG>GGA	p.G595G	COL9A1_uc003pfe.3_Silent_p.G168G|COL9A1_uc003pff.3_Silent_p.G352G	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	595	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						GACCAGGCTTCCCTGGAGCAC	0.433													11	41					0	0	0.00136819	0	0
COL9A1	1297	broad.mit.edu	37	6	70984465	70984465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:70984465C>T	uc003pfg.3	-	11	1145	c.986G>A	c.(985-987)GGA>GAA	p.G329E	COL9A1_uc003pfe.3_5'UTR|COL9A1_uc003pff.3_Missense_Mutation_p.G86E	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	329	Triple-helical region (COL3).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TCCATCAGGTCCTGTTAATCC	0.353													19	18					0	0	0.00152264	0	0
KCNQ5	56479	broad.mit.edu	37	6	73879529	73879529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:73879529C>T	uc003pgk.2	+	11	1876	c.1529C>T	c.(1528-1530)TCA>TTA	p.S510L	KCNQ5_uc011dyh.1_Missense_Mutation_p.S529L|KCNQ5_uc011dyi.1_Missense_Mutation_p.S520L|KCNQ5_uc010kat.2_Missense_Mutation_p.S501L|KCNQ5_uc011dyj.1_Intron|KCNQ5_uc011dyk.1_Missense_Mutation_p.S260L	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	510					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGTGATGTATCAGTGGAAGAC	0.418													6	35					0	0	0.00116845	0	0
DDX43	55510	broad.mit.edu	37	6	74123753	74123754	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:74123753_74123754AG>CA	uc003pgw.2	+	13	1901_1902	c.1557_1558AG>CA	c.(1555-1560)GGAGAT>GGCAAT	p.D520N		NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	520	Helicase C-terminal.					intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						CTCTGCATGGAGATAGAGAACA	0.347													13	18					0	0	6.4e-05	0	0
COL12A1	1303	broad.mit.edu	37	6	75801230	75801230	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:75801230C>T	uc003phs.2	-	61	8827	c.8661G>A	c.(8659-8661)GGG>GGA	p.G2887G	COL12A1_uc003pht.2_Silent_p.G1723G	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2887	Triple-helical region (COL2) with 1 imperfection.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CTCCTTTCAACCCAGATGGAC	0.299													22	76					0	0	0.000720815	0	0
COL12A1	1303	broad.mit.edu	37	6	75884929	75884929	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:75884929G>A	uc003phs.2	-	13	2701	c.2535C>T	c.(2533-2535)CTC>CTT	p.L845L	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	845	Fibronectin type-III 5.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TATATGTGACGAGATACTGTT	0.473													19	62					0	0	0.00152264	0	0
COL12A1	1303	broad.mit.edu	37	6	75904613	75904613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:75904613G>A	uc003phs.2	-	3	290	c.124C>T	c.(124-126)CAT>TAT	p.H42Y	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	42	Fibronectin type-III 1.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CATGACATATGAACAGTATTT	0.368													14	39					0	0	0.000566183	0	0
FILIP1	27145	broad.mit.edu	37	6	76023567	76023567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:76023567C>T	uc003pia.2	-	5	2354	c.1981G>A	c.(1981-1983)GAT>AAT	p.D661N	FILIP1_uc003phy.1_Missense_Mutation_p.D661N|FILIP1_uc003phz.2_Missense_Mutation_p.D562N|FILIP1_uc010kbe.2_Missense_Mutation_p.D664N|FILIP1_uc003pib.1_Missense_Mutation_p.D413N	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	661	Potential.									skin(3)|ovary(1)	4						TCCAGCTGATCATACTCATCT	0.393													26	100					0	0	0.0024448	0	0
CYB5R4	51167	broad.mit.edu	37	6	84618798	84618798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:84618798C>T	uc003pkf.2	+	4	533	c.401C>T	c.(400-402)GCT>GTT	p.A134V		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	134					cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		ATTAAACCTGCTGTTCTGAAA	0.393													4	20					0	0	0.00116845	0	0
CNR1	1268	broad.mit.edu	37	6	88854370	88854370	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:88854370G>A	uc011dzq.1	-	2	4187	c.624C>T	c.(622-624)TTC>TTT	p.F208F	CNR1_uc010kbz.2_Silent_p.F208F|CNR1_uc011dzr.1_Silent_p.F208F|CNR1_uc011dzs.1_Silent_p.F208F|CNR1_uc003pmq.3_Silent_p.F208F|CNR1_uc011dzt.1_Silent_p.F208F|CNR1_uc010kca.2_Silent_p.F175F	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	208	Helical; Name=3; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	TGGCTGTGAGGAACAGGCTGC	0.567													4	20					0	0	0.00024832	0	0
CNR1	1268	broad.mit.edu	37	6	88854382	88854382	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:88854382C>T	uc011dzq.1	-	2	4175	c.612G>A	c.(610-612)GTG>GTA	p.V204V	CNR1_uc010kbz.2_Silent_p.V204V|CNR1_uc011dzr.1_Silent_p.V204V|CNR1_uc011dzs.1_Silent_p.V204V|CNR1_uc003pmq.3_Silent_p.V204V|CNR1_uc011dzt.1_Silent_p.V204V|CNR1_uc010kca.2_Silent_p.V171V	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	204	Helical; Name=3; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	ACAGGCTGCCCACGGAGGCAG	0.557													8	20					0	0	0.000274275	0	0
MDN1	23195	broad.mit.edu	37	6	90382348	90382348	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:90382348G>A	uc003pnn.1	-	81	13664	c.13548C>T	c.(13546-13548)CTC>CTT	p.L4516L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4516					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GGATGGCACAGAGGATGGCTC	0.418													13	28					0	0	0.00136819	0	0
MDN1	23195	broad.mit.edu	37	6	90411664	90411664	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:90411664C>T	uc003pnn.1	-	54	8381	c.8265G>A	c.(8263-8265)CTG>CTA	p.L2755L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2755					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TCTGGTGGACCAGATGTTTTA	0.453													19	28					0	0	0.00278032	0	0
GJA10	84694	broad.mit.edu	37	6	90605509	90605509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:90605509G>A	uc011eaa.1	+	1	1322	c.1322G>A	c.(1321-1323)CGA>CAA	p.R441Q		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	441	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		TCTGAAAAGCGACATCTGCAC	0.532													14	36					0	0	0.000422831	0	0
EPHA7	2045	broad.mit.edu	37	6	94120510	94120510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:94120510C>T	uc003poe.2	-	3	782	c.541G>A	c.(541-543)GGA>AGA	p.G181R	EPHA7_uc003pof.2_Missense_Mutation_p.G181R|EPHA7_uc011eac.1_Missense_Mutation_p.G181R|EPHA7_uc003pog.3_Missense_Mutation_p.G181R	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	181	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AGATAGAATCCCTTTTTGGAC	0.423													18	19					0	0	0.00152264	0	0
MANEA	79694	broad.mit.edu	37	6	96034656	96034656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:96034656C>T	uc003poo.1	+	2	481	c.341C>T	c.(340-342)CCA>CTA	p.P114L	MANEA_uc003pon.2_Missense_Mutation_p.P114L	NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	114	Catalytic (Probable).|Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		TATGGAAATCCACAATTTGAT	0.378													33	21					0	0	0.00209593	0	0
FUT9	10690	broad.mit.edu	37	6	96651086	96651086	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:96651086C>T	uc003pop.3	+	3	396	c.55C>T	c.(55-57)CTG>TTG	p.L19L		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	19	Helical; Signal-anchor for type II membrane protein; (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CTGCATTATCCTGGGCTGTTT	0.413													7	21					0	0	0.00198382	0	0
FUT9	10690	broad.mit.edu	37	6	96651129	96651129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:96651129C>T	uc003pop.3	+	3	439	c.98C>T	c.(97-99)ACC>ATC	p.T33I		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	33	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		ATCAAACCTACCAACAGCTGG	0.368													5	20					0	0	0.000602214	0	0
MCHR2	84539	broad.mit.edu	37	6	100382357	100382357	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:100382357G>A	uc003pqh.1	-	5	939	c.624C>T	c.(622-624)TTC>TTT	p.F208F	MCHR2_uc003pqi.1_Silent_p.F208F	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	208	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		AGGGTAGAGGGAAAAAAAAAG	0.284													12	46					0	0	0.00185496	0	0
SIM1	6492	broad.mit.edu	37	6	100841367	100841367	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:100841367G>A	uc003pqj.3	-	10	1773	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I	SIM1_uc010kcu.2_Silent_p.I522I	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	522	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		TCTTACCATGGATCCTGTGGA	0.527													9	37					0	0	0.000978159	0	0
ASCC3	10973	broad.mit.edu	37	6	101086613	101086613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:101086613G>A	uc003pqk.2	-	25	4315	c.3986C>T	c.(3985-3987)CCT>CTT	p.P1329L		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1329					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		TGTCTGTACAGGGTTAAAGTG	0.423													23	50					0	0	0.00106085	0	0
GRIK2	2898	broad.mit.edu	37	6	102307252	102307252	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:102307252T>C	uc003pqp.3	+	10	1657	c.1408T>C	c.(1408-1410)TTA>CTA	p.L470L	GRIK2_uc003pqn.2_Silent_p.L470L|GRIK2_uc003pqo.3_Silent_p.L470L|GRIK2_uc010kcw.2_Silent_p.L470L	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	470	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	CCTCAGAGAGTTATCTACAAT	0.398													20	21					0	0	0.000958276	0	0
PRDM1	639	broad.mit.edu	37	6	106543594	106543594	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:106543594G>A	uc003prd.2	+	3	630	c.396G>A	c.(394-396)AGG>AGA	p.R132R		NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	132	SET.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		ACGCCAACAGGAAATATTTTT	0.408			D|N|Mis|F|S		DLBCL								9	27					0	0	0.000673444	0	0
C6orf203	51250	broad.mit.edu	37	6	107365516	107365516	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:107365516T>G	uc003prq.2	+	3	604	c.523T>G	c.(523-525)TTA>GTA	p.L175V	C6orf203_uc011eaj.1_Missense_Mutation_p.L180V|C6orf203_uc010kde.2_Missense_Mutation_p.L175V	NM_016487	NP_057571	Q9P0P8	CF203_HUMAN	hypothetical protein LOC51250 isoform a	175											0	Breast(9;0.00124)|all_epithelial(6;0.0729)	all_cancers(87;0.00461)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|Colorectal(196;0.171)|all_epithelial(87;0.23)	BRCA - Breast invasive adenocarcinoma(8;0.000395)|all cancers(7;0.00065)|Epithelial(6;0.000834)|OV - Ovarian serous cystadenocarcinoma(5;0.244)	BRCA - Breast invasive adenocarcinoma(108;0.117)		TGAGGAAAAATTATGGAAGAA	0.318													22	65					0	0	0.00395357	0	0
DDO	8528	broad.mit.edu	37	6	110714134	110714134	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:110714134G>A	uc003puc.2	-	5	958	c.954C>T	c.(952-954)CTC>CTT	p.L318L	C6orf186_uc003pub.2_Intron|DDO_uc003pud.2_Silent_p.L259L	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	290					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		CTCGCGCAAGGAGCTCTGTCT	0.647													10	32					0	0	0.00136819	0	0
DDO	8528	broad.mit.edu	37	6	110726085	110726085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:110726085C>T	uc003puc.2	-	4	438	c.434G>A	c.(433-435)CGA>CAA	p.R145Q	C6orf186_uc003pub.2_Intron|DDO_uc003pud.2_Intron	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	117					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		AGTCATCTTTCGAAATCCCAG	0.468													13	25					0	0	0.00185496	0	0
RPF2	84154	broad.mit.edu	37	6	111345505	111345505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:111345505C>T	uc003pun.2	+	9	735	c.716C>T	c.(715-717)TCT>TTT	p.S239F	RPF2_uc003puo.2_Missense_Mutation_p.S176F|uc003pup.1_5'Flank	NM_032194	NP_115570	Q9H7B2	RPF2_HUMAN	brix domain containing 1	239						nucleolus	protein binding			ovary(2)	2						TATAAATTATCTATGAAAATG	0.378													10	41					0	0	0.000673444	0	0
COL10A1	1300	broad.mit.edu	37	6	116446585	116446585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:116446585C>T	uc003pwm.2	-	2	167	c.71G>A	c.(70-72)CGA>CAA	p.R24Q	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	24	Nonhelical region (NC2).				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		CATTTGGTATCGTTCAGCGTA	0.398													26	55					0	0	0.000878237	0	0
FAM26E	254228	broad.mit.edu	37	6	116836826	116836826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:116836826C>T	uc003pwy.2	+	2	656	c.604C>T	c.(604-606)CGC>TGC	p.R202C	BET3L_uc011ebh.1_Intron	NM_153711	NP_714922	Q8N5C1	FA26E_HUMAN	hypothetical protein LOC254228	202						integral to membrane					0		all_cancers(87;0.0608)|all_epithelial(87;0.05)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0242)|all cancers(137;0.0419)|OV - Ovarian serous cystadenocarcinoma(136;0.0671)|Epithelial(106;0.212)		ATGTTATGCTCGCTGCCGATC	0.413													12	35					0	0	0.00185496	0	0
FAM26E	254228	broad.mit.edu	37	6	116836887	116836887	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:116836887A>T	uc003pwy.2	+	2	717	c.665A>T	c.(664-666)GAG>GTG	p.E222V	BET3L_uc011ebh.1_Intron	NM_153711	NP_714922	Q8N5C1	FA26E_HUMAN	hypothetical protein LOC254228	222						integral to membrane					0		all_cancers(87;0.0608)|all_epithelial(87;0.05)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0242)|all cancers(137;0.0419)|OV - Ovarian serous cystadenocarcinoma(136;0.0671)|Epithelial(106;0.212)		GCACAAAAGGAGAAGGAGCAG	0.438													10	29					0	0	0.00136819	0	0
ROS1	6098	broad.mit.edu	37	6	117662625	117662625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:117662625G>A	uc003pxp.1	-	29	5039	c.4840C>T	c.(4840-4842)CCA>TCA	p.P1614S	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1614	Fibronectin type-III 7.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTTCCATTTGGAAATTCACTT	0.403			T	GOPC|ROS1	glioblastoma|NSCLC								11	26					0	0	0.000978159	0	0
ROS1	6098	broad.mit.edu	37	6	117662645	117662645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:117662645G>A	uc003pxp.1	-	29	5019	c.4820C>T	c.(4819-4821)CCT>CTT	p.P1607L	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1607	Fibronectin type-III 7.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TTGTCTTAGAGGAGTTTCAGG	0.403			T	GOPC|ROS1	glioblastoma|NSCLC								20	16					0	0	0.00188189	0	0
C6orf170	221322	broad.mit.edu	37	6	121613284	121613284	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:121613284G>A	uc003pyo.1	-	12	1355	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	C6orf170_uc003pyq.1_RNA|C6orf170_uc003pyp.1_5'UTR	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	429					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		GTGAGTGAATGAAATAAATAT	0.279													13	53					0	0	0.00244969	0	0
CLVS2	134829	broad.mit.edu	37	6	123369870	123369870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:123369870G>A	uc003pzi.1	+	4	1537	c.668G>A	c.(667-669)CGG>CAG	p.R223Q		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	223	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GAGAAAACTCGGAAAAGGGTA	0.378													14	59					0	0	0.000422831	0	0
TRMT11	60487	broad.mit.edu	37	6	126319784	126319784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:126319784C>T	uc003qam.2	+	6	597	c.476C>T	c.(475-477)CCA>CTA	p.P159L	TRMT11_uc003qan.2_RNA|TRMT11_uc010kev.2_Missense_Mutation_p.P159L	NM_001031712	NP_001026882	Q7Z4G4	TRM11_HUMAN	tRNA methyltransferase 11	159					tRNA processing		methyltransferase activity|nucleic acid binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0356)		GGTTTAGACCCAAACTGCATC	0.338													18	48					0	0	0.000958276	0	0
C6orf174	387104	broad.mit.edu	37	6	127796835	127796835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:127796835C>T	uc003qbd.2	-	6	3201	c.2336G>A	c.(2335-2337)GGC>GAC	p.G779D	C6orf174_uc003qbc.2_5'UTR	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	779						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GTCGCTCTCGCCGCCGATGGG	0.726													6	10					0	0	0.00116845	0	0
C6orf174	387104	broad.mit.edu	37	6	127797031	127797031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:127797031C>T	uc003qbd.2	-	6	3005	c.2140G>A	c.(2140-2142)GAG>AAG	p.E714K	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	714	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CCGCTGAGCTCGTTGATCTGC	0.657													9	32					0	0	0.00136819	0	0
C6orf174	387104	broad.mit.edu	37	6	127837056	127837056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:127837056C>T	uc003qbd.2	-	2	1569	c.704G>A	c.(703-705)GGA>GAA	p.G235E		NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	235	Gly-rich.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		AACGCCGCTTCCGGAGTTTCT	0.657													4	25					0	0	0.00116845	0	0
LAMA2	3908	broad.mit.edu	37	6	129636758	129636758	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:129636758A>T	uc003qbn.2	+	25	3798	c.3693A>T	c.(3691-3693)GAA>GAT	p.E1231D	LAMA2_uc003qbo.2_Missense_Mutation_p.E1231D	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1231	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TCCATTTGGAACCTTTTTATT	0.393													14	45					0	0	0.000422831	0	0
LAMA2	3908	broad.mit.edu	37	6	129637182	129637182	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:129637182G>A	uc003qbn.2	+	27	4030	c.3925_splice	c.e27-1	p.K1309_splice	LAMA2_uc003qbo.2_Splice_Site_p.K1309_splice	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor						cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CTTGTTAACAGAAAGAATGGA	0.343													18	34					0	0	0.00074312	0	0
ENPP3	5169	broad.mit.edu	37	6	131995398	131995398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:131995398C>T	uc003qcu.3	+	9	1086	c.739C>T	c.(739-741)CCA>TCA	p.P247S	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_Missense_Mutation_p.P213S|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.P247S	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	247	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		ACAAAATAATCCAGCCTGGTG	0.413													7	17					0	0	0.000274275	0	0
ENPP1	5167	broad.mit.edu	37	6	132181527	132181527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:132181527G>A	uc011ecf.1	+	8	816	c.796G>A	c.(796-798)GGA>AGA	p.G266R	ENPP1_uc003qcy.2_5'Flank	NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	266	Phosphodiesterase.|Extracellular (Potential).		G -> V (in ARHR2; rs121908248).		3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	TCTTTTTTAGGGATTGTATCC	0.289													10	20					0	0	0.000673444	0	0
MYB	4602	broad.mit.edu	37	6	135517065	135517065	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:135517065C>T	uc003qfc.2	+	9	1327	c.1128C>T	c.(1126-1128)ATC>ATT	p.I376I	MYB_uc003qfh.2_Silent_p.I376I|MYB_uc003qfi.2_Silent_p.I376I|MYB_uc010kgi.2_Silent_p.I376I|MYB_uc003qfq.2_Silent_p.I373I|MYB_uc010kgj.2_Silent_p.I341I|MYB_uc003qfo.2_Intron|MYB_uc003qfu.2_Silent_p.I373I|MYB_uc003qfl.2_Intron|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_Intron|MYB_uc003qfx.2_Intron|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_Intron|MYB_uc003qfe.2_Intron|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_Intron|MYB_uc003qfm.2_Intron|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_Silent_p.I2I|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_Silent_p.I188I|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Silent_p.I376I|MYB_uc003qge.1_RNA	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	376	Leucine-zipper.|Negative regulatory domain (By similarity).				blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		GGTGCATGATCGTCCACCAGG	0.478			T	NFIB	adenoid cystic carcinoma								10	18					0	0	0.000442599	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597560	136597560	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:136597560T>A	uc003qgx.1	-	5	1356	c.1103A>T	c.(1102-1104)AAA>ATA	p.K368I	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Missense_Mutation_p.K366I|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.K366I	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	368					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TGCCCTCCCTTTCTCTGATCC	0.423													10	65					0	0	0.000978159	0	0
MAP7	9053	broad.mit.edu	37	6	136704882	136704882	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:136704882C>T	uc003qgz.2	-	6	810	c.564G>A	c.(562-564)TCG>TCA	p.S188S	MAP7_uc011edf.1_Silent_p.S173S|MAP7_uc011edg.1_Silent_p.S210S|MAP7_uc010kgu.2_Silent_p.S210S|MAP7_uc011edh.1_Intron|MAP7_uc010kgv.2_Silent_p.S210S|MAP7_uc010kgs.2_Silent_p.S42S|MAP7_uc011edi.1_Silent_p.S42S|MAP7_uc010kgq.1_Silent_p.S94S|MAP7_uc003qha.1_Intron|MAP7_uc010kgr.2_Silent_p.S42S|MAP7_uc010kgt.2_Silent_p.S210S	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	188					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		CAACATATTTCGAAAGATTCA	0.398													11	20					0	0	0.00185496	0	0
PEX7	5191	broad.mit.edu	37	6	137191066	137191066	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:137191066A>G	uc003qhd.2	+	7	774	c.672A>G	c.(670-672)AGA>AGG	p.R224R	PEX7_uc010kgx.2_RNA	NM_000288	NP_000279	O00628	PEX7_HUMAN	peroxisomal biogenesis factor 7	224	WD 4.				ether lipid biosynthetic process|protein import into peroxisome matrix	peroxisome	peroxisome matrix targeting signal-2 binding				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000257)|OV - Ovarian serous cystadenocarcinoma(155;0.00492)		GTAGTTTGAGAGGCTGGGACT	0.388													48	125					0	0	0.00361006	0	0
IL20RA	53832	broad.mit.edu	37	6	137338107	137338107	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:137338107G>A	uc003qhj.2	-	2	655	c.222C>T	c.(220-222)TTC>TTT	p.F74F	IL20RA_uc011edl.1_Silent_p.F25F|IL20RA_uc003qhk.2_Missense_Mutation_p.S23L|IL20RA_uc010kgy.1_RNA	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	74	Extracellular (Potential).|Fibronectin type-III 1.					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		AAACTTACATGAAATACTGCA	0.373													16	42					0	0	0.00074312	0	0
IL20RA	53832	broad.mit.edu	37	6	137338238	137338238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:137338238G>A	uc003qhj.2	-	2	524	c.91C>T	c.(91-93)CCC>TCC	p.P31S	IL20RA_uc011edl.1_5'UTR|IL20RA_uc003qhk.2_5'UTR|IL20RA_uc010kgy.1_RNA	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	31	Extracellular (Potential).					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		GAGACACAGGGAACTGAAAAA	0.353													8	3					0	0	0.000274275	0	0
UTRN	7402	broad.mit.edu	37	6	144812176	144812176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:144812176C>T	uc003qkt.2	+	31	4467	c.4375C>T	c.(4375-4377)CAC>TAC	p.H1459Y		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1459	Spectrin 10.|Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		AGCAGAACTTCACGTTCTGGA	0.522													15	56					0	0	0.00244969	0	0
MTHFD1L	25902	broad.mit.edu	37	6	151281506	151281506	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:151281506G>A	uc003qob.2	+	18	2167	c.1899G>A	c.(1897-1899)GTG>GTA	p.V633V	MTHFD1L_uc011een.1_RNA|MTHFD1L_uc011eeo.1_Silent_p.V634V|MTHFD1L_uc003qoc.2_Silent_p.V581V	NM_015440	NP_056255	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+	633	Formyltetrahydrofolate synthetase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity			ovary(3)|large_intestine(1)	4		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		GAAGGATGGTGGTGGCCAGTG	0.582													3	8					0	0	6.4e-05	0	0
SYNE1	23345	broad.mit.edu	37	6	152651014	152651014	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:152651014A>G	uc010kiw.2	-	78	15408	c.14806T>C	c.(14806-14808)TCC>CCC	p.S4936P	SYNE1_uc003qot.3_Missense_Mutation_p.S4865P|SYNE1_uc003qou.3_Missense_Mutation_p.S4936P|SYNE1_uc010kiz.2_Missense_Mutation_p.S691P	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4936	Cytoplasmic (Potential).|Potential.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTCAAGCTGGACTGGACCTCT	0.488										HNSCC(10;0.0054)			25	121					0	0	0.00127121	0	0
SYNE1	23345	broad.mit.edu	37	6	152716751	152716751	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:152716751A>G	uc010kiw.2	-	51	8214	c.7612T>C	c.(7612-7614)TTC>CTC	p.F2538L	SYNE1_uc003qot.3_Missense_Mutation_p.F2545L|SYNE1_uc003qou.3_Missense_Mutation_p.F2538L|SYNE1_uc010kjb.1_Missense_Mutation_p.F2521L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2538	Cytoplasmic (Potential).|Spectrin 5.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCCGTATTGAACCTTTCTTCC	0.373										HNSCC(10;0.0054)			13	41					0	0	0.00136819	0	0
SYNE1	23345	broad.mit.edu	37	6	152737772	152737772	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:152737772G>A	uc010kiw.2	-	41	6402	c.5800C>T	c.(5800-5802)CAA>TAA	p.Q1934*	SYNE1_uc003qot.3_Nonsense_Mutation_p.Q1941*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Q1934*|SYNE1_uc010kjb.1_Nonsense_Mutation_p.Q1917*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1934	Cytoplasmic (Potential).|Potential.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGATGGTATTGGGCTTTGGAA	0.483										HNSCC(10;0.0054)			21	30					0	0	0.00229938	0	0
SYNE1	23345	broad.mit.edu	37	6	152740785	152740785	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:152740785C>T	uc010kiw.2	-	40	5942	c.5340G>A	c.(5338-5340)TGG>TGA	p.W1780*	SYNE1_uc003qot.3_Nonsense_Mutation_p.W1787*|SYNE1_uc003qou.3_Nonsense_Mutation_p.W1780*|SYNE1_uc010kjb.1_Nonsense_Mutation_p.W1763*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1780	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ACAGTTTAATCCAGACAGAAA	0.358										HNSCC(10;0.0054)			5	22					0	0	0.000602214	0	0
MYCT1	80177	broad.mit.edu	37	6	153019176	153019176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:153019176G>A	uc003qpd.3	+	1	147	c.139G>A	c.(139-141)GAT>AAT	p.D47N	MYCT1_uc010kjc.1_Missense_Mutation_p.D47N|MYCT1_uc003qpc.3_Missense_Mutation_p.D47N	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	47						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		ATTTCTTGTGGATATTATGGC	0.313													12	38					0	0	0.00185496	0	0
RGS17	26575	broad.mit.edu	37	6	153365070	153365070	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:153365070A>G	uc003qpm.2	-	2	240	c.84T>C	c.(82-84)TGT>TGC	p.C28C		NM_012419	NP_036551	Q9UGC6	RGS17_HUMAN	regulator of G-protein signalling 17	28	Poly-Cys.				negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			pancreas(1)	1		Ovarian(120;0.126)		OV - Ovarian serous cystadenocarcinoma(155;1.09e-09)|BRCA - Breast invasive adenocarcinoma(81;0.0429)		AACAAAAGCAACAGGTGTTGT	0.517									Lung_Cancer_Familial_Clustering_of				11	41					0	0	0.00185496	0	0
ARID1B	57492	broad.mit.edu	37	6	157505554	157505554	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:157505554C>T	uc003qqn.2	+	13	3633	c.3481C>T	c.(3481-3483)CAG>TAG	p.Q1161*	ARID1B_uc003qqo.2_Nonsense_Mutation_p.Q1121*|ARID1B_uc003qqp.2_Nonsense_Mutation_p.Q1108*|ARID1B_uc010kjl.2_Nonsense_Mutation_p.Q306*	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1166					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GCCCAAGCTCCAGCCGCCATC	0.617													6	14					0	0	0.00307968	0	0
SYNJ2	8871	broad.mit.edu	37	6	158514098	158514098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:158514098C>T	uc003qqx.1	+	26	3781	c.3706C>T	c.(3706-3708)CCT>TCT	p.P1236S	SYNJ2_uc003qqw.1_Missense_Mutation_p.P1236S|SYNJ2_uc003qqy.1_Missense_Mutation_p.P949S|SYNJ2_uc003qqz.1_Missense_Mutation_p.P853S|SYNJ2_uc003qra.1_Missense_Mutation_p.P579S|SYNJ2_uc010kjp.1_Missense_Mutation_p.P119S	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1236	Catalytic (By similarity).|Pro-rich.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		ACCCAGAGTTCCTGCCATCAA	0.552													5	16					0	0	0.000602214	0	0
SLC22A2	6582	broad.mit.edu	37	6	160671584	160671584	+	Silent	SNP	G	A	A	rs8177510		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:160671584G>A	uc003qtf.2	-	3	839	c.669C>T	c.(667-669)ATC>ATT	p.I223I	SLC22A2_uc003qte.1_Silent_p.I223I|SLC22A2_uc003qth.1_Silent_p.I223I	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	223	Helical; (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		TCTTACTCAGGATGTAGCCTA	0.483													15	40					0	0	0.00121646	0	0
PLG	5340	broad.mit.edu	37	6	161139393	161139393	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:161139393G>A	uc003qtm.3	+	8	918	c.855G>A	c.(853-855)GGG>GGA	p.G285G		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	285	Kringle 3.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ACTATCGCGGGAATGTGGCTG	0.498													11	24					0	0	0.000978159	0	0
C6orf118	168090	broad.mit.edu	37	6	165712932	165712932	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:165712932C>T	uc003qum.3	-	4	972	c.936G>A	c.(934-936)GAG>GAA	p.E312E	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	312											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CGATCGTCACCTCGTACTGTG	0.473													11	22					0	0	0.00136819	0	0
THBS2	7058	broad.mit.edu	37	6	169632811	169632811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:169632811C>T	uc003qwt.2	-	13	2128	c.1880G>A	c.(1879-1881)AGA>AAA	p.R627K		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	627	EGF-like 2; calcium-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CTGGTTCCCTCTGTATCGGGG	0.622													7	27					0	0	0.00198382	0	0
THBS2	7058	broad.mit.edu	37	6	169648950	169648950	+	Silent	SNP	G	A	A	rs139930955	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:169648950G>A	uc003qwt.2	-	4	419	c.171C>T	c.(169-171)TTC>TTT	p.F57F		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	57	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CAAAGCGCACGAAGCGGTAAG	0.592													5	14					0	0	0.000602214	0	0
C6orf70	55780	broad.mit.edu	37	6	170160786	170160786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr6:170160786C>T	uc003qxg.1	+	8	824	c.791C>T	c.(790-792)TCT>TTT	p.S264F	C6orf70_uc011ehb.1_Missense_Mutation_p.S138F|C6orf70_uc003qxh.1_Missense_Mutation_p.S264F|C6orf70_uc010kky.1_Missense_Mutation_p.S138F	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	264						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		ATGATGAAATCTGCTTTTATA	0.348													10	21					0	0	0.00185496	0	0
FAM20C	56975	broad.mit.edu	37	7	195687	195687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:195687G>A	uc003sip.2	+	2	970	c.739G>A	c.(739-741)GAG>AAG	p.E247K		NM_020223	NP_064608	Q8IXL6	DMP4_HUMAN	family with sequence similarity 20, member C	247						extracellular region					0		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.57e-17)|Epithelial(4;1.26e-16)|all cancers(6;4.79e-14)		CCCGGCCATCGAGGCCCTGCT	0.632													7	50					0	0	0.000442599	0	0
SNX8	29886	broad.mit.edu	37	7	2304088	2304088	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:2304088G>A	uc003slw.2	-	6	670	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	209					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		CAGCTGGGAGGAAGTCCTGAC	0.602													5	20					0	0	0.000602214	0	0
GNA12	2768	broad.mit.edu	37	7	2834666	2834666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:2834666G>A	uc003smu.2	-	2	585	c.421C>T	c.(421-423)CCT>TCT	p.P141S	GNA12_uc011jwb.1_Missense_Mutation_p.P141S|GNA12_uc003smt.2_Missense_Mutation_p.P82S	NM_007353	NP_031379	Q03113	GNA12_HUMAN	guanine nucleotide binding protein (G protein)	141					G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.02e-13)		GGCTCCACAGGCAGCCCCGCC	0.562													21	123					0	0	0.00188189	0	0
SDK1	221935	broad.mit.edu	37	7	4007031	4007031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:4007031C>T	uc003smx.2	+	10	1650	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	504	Ig-like C2-type 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGTGAGGTGTCCGGGGCTCCC	0.552													9	51					0	0	0.000442599	0	0
SDK1	221935	broad.mit.edu	37	7	4050601	4050601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:4050601C>T	uc003smx.2	+	15	2274	c.2135C>T	c.(2134-2136)TCT>TTT	p.S712F	SDK1_uc010kso.2_5'UTR	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	712	Fibronectin type-III 1.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTTTCAGACTCTCCATGGAAG	0.423													9	43					0	0	0.000673444	0	0
FOXK1	221937	broad.mit.edu	37	7	4780549	4780549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:4780549C>T	uc003snc.1	+	2	651	c.641C>T	c.(640-642)CCG>CTG	p.P214L	FOXK1_uc003sna.1_Missense_Mutation_p.P51L|FOXK1_uc003snb.1_Missense_Mutation_p.P214L	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	214					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		CCAGCCTCCCCGCTGCGGCCA	0.647													15	67					0	0	0.00316338	0	0
FBXL18	80028	broad.mit.edu	37	7	5540754	5540754	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:5540754G>A	uc003soo.2	-	3	1240	c.1146C>T	c.(1144-1146)TGC>TGT	p.C382C	FBXL18_uc003son.3_Silent_p.C382C	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	382	LRR 6.									central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		GCAGGTTGCAGCAGGACGCCA	0.697													5	34					0	0	0.00198382	0	0
OCM	654231	broad.mit.edu	37	7	5920543	5920543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:5920543G>A	uc003spe.3	+	1	115	c.23G>A	c.(22-24)AGT>AAT	p.S8N		NM_001097622	NP_001091091	P0CE72	ONCO_HUMAN	oncomodulin	8							calcium ion binding				0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0978)|OV - Ovarian serous cystadenocarcinoma(56;2.11e-14)		GACGTGCTCAGTGCTGACGAC	0.537													13	71					0	0	0.00074312	0	0
AIMP2	7965	broad.mit.edu	37	7	6063007	6063007	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:6063007C>A	uc003spo.2	+	4	761	c.648C>A	c.(646-648)TTC>TTA	p.F216L	EIF2AK1_uc003spp.2_3'UTR|EIF2AK1_uc003spq.2_3'UTR	NM_006303	NP_006294	Q13155	AIMP2_HUMAN	aminoacyl tRNA synthetase complex-interacting	216	Interaction with TP53.				apoptosis|cell differentiation|multicellular organismal development|tRNA aminoacylation for protein translation	cytosol|nucleus	protein binding			ovary(1)	1						TTGCACGTTTCTTGTTCTCTC	0.458													12	65					1.5842e-08	4.43419e-08	0.00185496	1	0
C7orf70	84792	broad.mit.edu	37	7	6370348	6370348	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:6370348G>A	uc003spu.2	-	2	906	c.438C>T	c.(436-438)CCC>CCT	p.P146P		NM_001037163	NP_001032240	Q7Z4H9	SIPAR_HUMAN	hypothetical protein LOC84792	146						nucleus					0						GCTCTCCTTTGGGGCACTGTC	0.607													31	13					0	0	0.00209593	0	0
RAC1	5879	broad.mit.edu	37	7	6426892	6426892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:6426892C>T	uc003spx.2	+	2	326	c.85C>T	c.(85-87)CCT>TCT	p.P29S	RAC1_uc003spw.2_Missense_Mutation_p.P29S	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	29					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CAATGCATTTCCTGGAGAATA	0.353													29	172					0	0	0.0024448	0	0
C1GALT1	56913	broad.mit.edu	37	7	7283248	7283249	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:7283248_7283249CC>TT	uc010ktn.2	+	4	1205_1206	c.982_983CC>TT	c.(982-984)CCA>TTA	p.P328L	C1GALT1_uc003sra.2_Missense_Mutation_p.P328L|uc003srb.1_5'Flank	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	328	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		TCATCTTCGTCCATATGGTTAT	0.347													32	178					0	0	6.4e-05	0	0
COL28A1	340267	broad.mit.edu	37	7	7493093	7493093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:7493093C>T	uc003src.1	-	17	1535	c.1418G>A	c.(1417-1419)GGA>GAA	p.G473E	COL28A1_uc011jxe.1_Missense_Mutation_p.G156E|COL28A1_uc003srd.2_Missense_Mutation_p.G28E	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	473					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TAAGCCCTGTCCTGCGGGCCC	0.393													17	125					0	0	0.00152264	0	0
COL28A1	340267	broad.mit.edu	37	7	7557443	7557443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:7557443C>T	uc003src.1	-	7	956	c.839G>A	c.(838-840)GGA>GAA	p.G280E	COL28A1_uc011jxe.1_5'UTR|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	280					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		ACCTCTTTCTCCAGCTTCTCC	0.423													18	101					0	0	0.00278032	0	0
GLCCI1	113263	broad.mit.edu	37	7	8125931	8125931	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:8125931C>T	uc003srk.2	+	8	1966	c.1407C>T	c.(1405-1407)CTC>CTT	p.L469L		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	469											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		TAGGCCCCCTCTTACCTGCTT	0.502													36	185					0	0	0.00111076	0	0
PHF14	9678	broad.mit.edu	37	7	11053476	11053476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:11053476C>T	uc003sry.1	+	5	1583	c.1148C>T	c.(1147-1149)CCT>CTT	p.P383L	PHF14_uc011jxi.1_Missense_Mutation_p.P98L|PHF14_uc003srz.2_Missense_Mutation_p.P383L|PHF14_uc011jxj.1_Missense_Mutation_p.P98L	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	383							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		GGTGTTTCTCCTAGCTGTGAA	0.388													5	45					0	0	0.00198382	0	0
THSD7A	221981	broad.mit.edu	37	7	11630095	11630095	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:11630095T>C	uc003ssf.3	-	4	1697	c.1445A>G	c.(1444-1446)AAC>AGC	p.N482S		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	482	Extracellular (Potential).|TSP type-1 4.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACCTTCTTTGTTCTTGTGGGT	0.493										HNSCC(18;0.044)			4	34					0	0	0.000602214	0	0
THSD7A	221981	broad.mit.edu	37	7	11676392	11676392	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:11676392C>T	uc003ssf.3	-	2	639	c.387G>A	c.(385-387)TGG>TGA	p.W129*		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	129	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GACACTGATTCCAAGGTCCCA	0.468										HNSCC(18;0.044)			9	42					0	0	0.000274275	0	0
DGKB	1607	broad.mit.edu	37	7	14613939	14613939	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:14613939G>A	uc003ssz.2	-	19	1858	c.1671C>T	c.(1669-1671)ATC>ATT	p.I557I	DGKB_uc011jxt.1_Silent_p.I538I|DGKB_uc003sta.2_Silent_p.I557I|DGKB_uc011jxu.1_Silent_p.I556I	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	557	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TGTCCAACATGATTTCTGTGC	0.368													26	153					0	0	0.00395357	0	0
MEOX2	4223	broad.mit.edu	37	7	15652188	15652188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:15652188C>T	uc003stc.2	-	3	1020	c.739G>A	c.(739-741)GGT>AGT	p.G247S	MEOX2_uc011jxw.1_Missense_Mutation_p.G247S	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	247					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		TGCTGTCCACCCTTTACCCTC	0.473													11	76					0	0	0.00185496	0	0
ISPD	729920	broad.mit.edu	37	7	16255735	16255735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:16255735C>T	uc010ktx.2	-	9	1207	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	ISPD_uc010kty.2_Missense_Mutation_p.E353K|uc003stf.2_Intron	NM_001101426	NP_001094896	A4D126	ISPD_HUMAN	notch1-induced protein isoform a	403					isoprenoid biosynthetic process		nucleotidyltransferase activity			ovary(1)	1						ATATTTCTTTCTTTTACTTCC	0.313										Multiple Myeloma(15;0.18)			13	94					0	0	0.00244969	0	0
ISPD	729920	broad.mit.edu	37	7	16255819	16255819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:16255819G>A	uc010ktx.2	-	9	1123	c.1123C>T	c.(1123-1125)CAT>TAT	p.H375Y	ISPD_uc010kty.2_Missense_Mutation_p.H325Y|uc003stf.2_Intron	NM_001101426	NP_001094896	A4D126	ISPD_HUMAN	notch1-induced protein isoform a	375					isoprenoid biosynthetic process		nucleotidyltransferase activity			ovary(1)	1						TCAAGAAAATGAACCTGCAAA	0.299										Multiple Myeloma(15;0.18)			5	31					0	0	0.000602214	0	0
TSPAN13	27075	broad.mit.edu	37	7	16817517	16817517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:16817517C>T	uc003stq.2	+	4	649	c.407C>T	c.(406-408)CCA>CTA	p.P136L		NM_014399	NP_055214	O95857	TSN13_HUMAN	tetraspan NET-6	136	Extracellular (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1	Lung NSC(10;0.0494)|all_lung(11;0.109)			UCEC - Uterine corpus endometrioid carcinoma (126;0.188)		AGTGTTAACCCAAATGACACC	0.383													47	32					0	0	0.00361006	0	0
SNX13	23161	broad.mit.edu	37	7	17915119	17915119	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:17915119G>A	uc003stw.1	-	7	861	c.648C>T	c.(646-648)TCC>TCT	p.S216S	SNX13_uc003stv.2_Silent_p.S216S|SNX13_uc010kuc.2_Silent_p.S13S|SNX13_uc003stx.1_Silent_p.S136S			Q9Y5W8	SNX13_HUMAN	SubName: Full=Putative uncharacterized protein SNX13; SubName: Full=Sorting nexin 13, isoform CRA_g;	216	PXA.				cell communication|intracellular protein transport|negative regulation of signal transduction|positive regulation of GTPase activity	early endosome membrane	phosphatidylinositol binding|signal transducer activity			central_nervous_system(2)|kidney(1)	3	Lung NSC(10;0.0261)|all_lung(11;0.0521)					CATCTTTGGGGGAAGTGCACA	0.363													12	73					0	0	0.00185496	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067222	18067222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:18067222C>T	uc003stz.2	-	1	265	c.184G>A	c.(184-186)GAA>AAA	p.E62K		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	62					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					TCGTTGATTTCGCCACAACCA	0.473													38	286					0	0	0.00170553	0	0
HDAC9	9734	broad.mit.edu	37	7	18624924	18624924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:18624924C>T	uc003suh.2	+	2	84	c.43C>T	c.(43-45)CCT>TCT	p.P15S	HDAC9_uc003sue.2_Missense_Mutation_p.P15S|HDAC9_uc011jyd.1_Missense_Mutation_p.P15S|HDAC9_uc003sui.2_Missense_Mutation_p.P15S|HDAC9_uc003suj.2_Missense_Mutation_p.P15S|HDAC9_uc011jya.1_Missense_Mutation_p.P56S|HDAC9_uc003sua.1_Missense_Mutation_p.P34S|HDAC9_uc011jyb.1_Missense_Mutation_p.P15S|HDAC9_uc003sud.1_Missense_Mutation_p.P15S|HDAC9_uc011jyc.1_Missense_Mutation_p.P15S|HDAC9_uc003suf.1_Missense_Mutation_p.P43S|HDAC9_uc010kud.1_Missense_Mutation_p.P15S|HDAC9_uc011jye.1_5'UTR|HDAC9_uc011jyf.1_5'UTR	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	15					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GTCAGAAGTTCCTGTGGGCCT	0.478													87	69					0	0	0.00361006	0	0
HDAC9	9734	broad.mit.edu	37	7	18688140	18688140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:18688140C>T	uc003suh.2	+	10	1333	c.1292C>T	c.(1291-1293)TCA>TTA	p.S431L	HDAC9_uc003sue.2_Missense_Mutation_p.S431L|HDAC9_uc011jyd.1_Missense_Mutation_p.S431L|HDAC9_uc003sui.2_Missense_Mutation_p.S434L|HDAC9_uc003suj.2_Missense_Mutation_p.S390L|HDAC9_uc011jya.1_Missense_Mutation_p.S428L|HDAC9_uc003sua.1_Missense_Mutation_p.S409L|HDAC9_uc011jyb.1_Missense_Mutation_p.S387L|HDAC9_uc003sud.1_Missense_Mutation_p.S431L|HDAC9_uc011jyc.1_Missense_Mutation_p.S390L|HDAC9_uc003suf.1_Missense_Mutation_p.S462L|HDAC9_uc010kud.1_Missense_Mutation_p.S434L|HDAC9_uc011jye.1_Missense_Mutation_p.S403L|HDAC9_uc011jyf.1_Missense_Mutation_p.S354L|HDAC9_uc010kue.1_Missense_Mutation_p.S174L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	431					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GAGAGAATTTCACCTGGCATT	0.433													9	28					0	0	0.000673444	0	0
HDAC9	9734	broad.mit.edu	37	7	18705996	18705996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:18705996G>A	uc003suh.2	+	11	1660	c.1619G>A	c.(1618-1620)GGA>GAA	p.G540E	HDAC9_uc003sue.2_Missense_Mutation_p.G540E|HDAC9_uc011jyd.1_Missense_Mutation_p.G540E|HDAC9_uc003sui.2_Missense_Mutation_p.G543E|HDAC9_uc003suj.2_Missense_Mutation_p.G499E|HDAC9_uc011jya.1_Missense_Mutation_p.G537E|HDAC9_uc003sua.1_Missense_Mutation_p.G518E|HDAC9_uc011jyb.1_Missense_Mutation_p.G496E|HDAC9_uc003sud.1_Missense_Mutation_p.G540E|HDAC9_uc011jyc.1_Missense_Mutation_p.G499E|HDAC9_uc003suf.1_Missense_Mutation_p.G571E|HDAC9_uc010kud.1_Missense_Mutation_p.G543E|HDAC9_uc011jye.1_Missense_Mutation_p.G512E|HDAC9_uc011jyf.1_Missense_Mutation_p.G463E|HDAC9_uc010kue.1_Intron	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	540					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GACACACTGGGACAAGTTGGG	0.547											OREG0017877	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	7					0	0	0.00024832	0	0
MACC1	346389	broad.mit.edu	37	7	20198551	20198551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:20198551C>T	uc003sus.3	-	5	1742	c.1433G>A	c.(1432-1434)AGA>AAA	p.R478K	MACC1_uc010kug.2_Missense_Mutation_p.R478K	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	478					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						GTGCATCTCTCTGTGCTCAAC	0.393													8	32					0	0	0.00307968	0	0
MACC1	346389	broad.mit.edu	37	7	20198624	20198624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:20198624C>T	uc003sus.3	-	5	1669	c.1360G>A	c.(1360-1362)GAA>AAA	p.E454K	MACC1_uc010kug.2_Missense_Mutation_p.E454K	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	454					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						TGTTTAATTTCTTTCCTTTCT	0.338													6	32					0	0	0.00116845	0	0
ITGB8	3696	broad.mit.edu	37	7	20406638	20406638	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:20406638T>C	uc003suu.2	+	3	922	c.217T>C	c.(217-219)TTC>CTC	p.F73L	ITGB8_uc011jyh.1_5'UTR|ITGB8_uc003sut.2_Missense_Mutation_p.F73L	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	73	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						TAAACAGGATTTCATTTCAGG	0.303													56	42					0	0	0.00361006	0	0
ABCB5	340273	broad.mit.edu	37	7	20721180	20721180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:20721180G>A	uc003suw.3	+	6	971	c.425G>A	c.(424-426)CGA>CAA	p.R142Q	ABCB5_uc010kuh.2_Missense_Mutation_p.R587Q	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	142	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TCTACTATTCGAAGTGCAGAT	0.403													9	60					0	0	0.000274275	0	0
ABCB5	340273	broad.mit.edu	37	7	20739693	20739693	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:20739693G>T	uc003suw.3	+	10	1483	c.937G>T	c.(937-939)GGC>TGC	p.G313C	ABCB5_uc010kuh.2_Missense_Mutation_p.G758C	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	313	Extracellular (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						ATTATTTTACGGCAGAGCAGG	0.303													18	122					1.36565e-18	3.8405e-18	0.00278032	1	0
DNAH11	8701	broad.mit.edu	37	7	21640507	21640507	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:21640507A>G	uc003svc.2	+	16	3245	c.3214A>G	c.(3214-3216)ATT>GTT	p.I1072V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1072	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AAATGAAGAAATTCCCGAACA	0.408									Kartagener_syndrome				16	76					0	0	0.000566183	0	0
DNAH11	8701	broad.mit.edu	37	7	21654753	21654753	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:21654753T>C	uc003svc.2	+	21	3905	c.3874T>C	c.(3874-3876)TTA>CTA	p.L1292L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1292	Potential.|Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCTTGAGGCCTTAGAAGAAGA	0.398									Kartagener_syndrome				4	41					0	0	0.00024832	0	0
DNAH11	8701	broad.mit.edu	37	7	21742383	21742383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:21742383C>T	uc003svc.2	+	38	6288	c.6257C>T	c.(6256-6258)TCT>TTT	p.S2086F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2086					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GTGGCTGGATCTCTGAAACGA	0.398									Kartagener_syndrome				5	32					0	0	0.00116845	0	0
DNAH11	8701	broad.mit.edu	37	7	21857904	21857904	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:21857904G>A	uc003svc.2	+	66	10690	c.10659G>A	c.(10657-10659)ACG>ACA	p.T3553T		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3553	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCGAGGAAACGATAGATCCAG	0.323									Kartagener_syndrome				11	70					0	0	0.00244969	0	0
DNAH11	8701	broad.mit.edu	37	7	21857953	21857954	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:21857953_21857954GG>AA	uc003svc.2	+	66	10739_10740	c.10708_10709GG>AA	c.(10708-10710)GGA>AAA	p.G3570K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3570	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AATTAAAAAAGGAAAGTAAGTA	0.351									Kartagener_syndrome				9	70					0	0	6.4e-05	0	0
DNAH11	8701	broad.mit.edu	37	7	21892114	21892114	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:21892114T>G	uc003svc.2	+	68	10978	c.10947T>G	c.(10945-10947)TTT>TTG	p.F3649L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3649	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AAAATGATTTTAAAATTGAGC	0.358									Kartagener_syndrome				9	75					0	0	0.000978159	0	0
DNAH11	8701	broad.mit.edu	37	7	21892148	21892148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:21892148C>T	uc003svc.2	+	68	11012	c.10981C>T	c.(10981-10983)CTT>TTT	p.L3661F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3661	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGACGATCTCCTTTTGCGCCT	0.433									Kartagener_syndrome				6	76					0	0	0.00198382	0	0
GPNMB	10457	broad.mit.edu	37	7	23300152	23300152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:23300152C>T	uc003swc.2	+	6	939	c.778C>T	c.(778-780)CCC>TCC	p.P260S	GPNMB_uc003swb.2_Missense_Mutation_p.P260S|GPNMB_uc011jyy.1_Missense_Mutation_p.P202S|GPNMB_uc011jyz.1_Missense_Mutation_p.P161S	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	260	PKD.|Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			CAAAGATCTCCCCATTATGTT	0.413													19	114					0	0	0.00188189	0	0
STK31	56164	broad.mit.edu	37	7	23871972	23871972	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:23871972A>G	uc003sws.3	+	24	3114	c.3047A>G	c.(3046-3048)AAC>AGC	p.N1016S	STK31_uc003swt.3_Missense_Mutation_p.N993S|STK31_uc011jze.1_Missense_Mutation_p.N993S|STK31_uc010kuq.2_Missense_Mutation_p.N993S|STK31_uc003swv.1_Intron	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	1016	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GGTGAAGCCAACTTTGATTGT	0.318													29	194					0	0	0.00327116	0	0
MPP6	51678	broad.mit.edu	37	7	24689321	24689321	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:24689321C>T	uc003swx.2	+	5	660	c.361C>T	c.(361-363)CAG>TAG	p.Q121*	MPP6_uc003swy.2_Nonsense_Mutation_p.Q121*	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	121					protein complex assembly		protein binding				0						TATCAATAATCAGTTATTACC	0.383													14	101					0	0	0.00244969	0	0
C7orf31	136895	broad.mit.edu	37	7	25176355	25176356	+	Nonsense_Mutation	DNP	GG	AA	AA	rs146941527	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:25176355_25176356GG>AA	uc003sxn.1	-	10	1569_1570	c.1008_1009CC>TT	c.(1006-1011)GCCCGA>GCTTGA	p.R337*	C7orf31_uc003sxm.1_Nonsense_Mutation_p.R179*	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	337											0						TGAATTAATCGGGCAATTCGTC	0.426													23	164					0	0	6.4e-05	0	0
NPVF	64111	broad.mit.edu	37	7	25266433	25266433	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:25266433C>T	uc003sxo.2	-	2	398	c.351G>A	c.(349-351)GAG>GAA	p.E117E		NM_022150	NP_071433	Q9HCQ7	RFRP_HUMAN	neuropeptide VF precursor	117					neuropeptide signaling pathway	extracellular region|membrane	G-protein coupled receptor activity			ovary(1)	1						CGAGGCTCACCTCCATATTTC	0.493													22	127					0	0	0.00188189	0	0
HOXA3	3200	broad.mit.edu	37	7	27148297	27148297	+	Missense_Mutation	SNP	G	A	A	rs144351903		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:27148297G>A	uc011jzl.1	-	3	769	c.569C>T	c.(568-570)TCG>TTG	p.S190L	HOXA3_uc011jzk.1_Missense_Mutation_p.S32L|HOXA3_uc003syk.2_Missense_Mutation_p.S190L	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	190					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						GCGCTTGGACGAAGCCTGCCC	0.716													6	23					0	0	0.00198382	0	0
HOXA6	3203	broad.mit.edu	37	7	27186993	27186993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:27186993C>T	uc003syo.1	-	1	376	c.376G>A	c.(376-378)GAA>AAA	p.E126K	uc003syp.1_Missense_Mutation_p.R26C|HOXA6_uc003syq.1_RNA	NM_024014	NP_076919	P31267	HXA6_HUMAN	homeobox A6	126						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						TCGGCGCCTTCGTCATGGAGT	0.617													9	45					0	0	0.000274275	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27835784	27835784	+	Silent	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:27835784C>A	uc003szl.2	+	12	1742	c.1584C>A	c.(1582-1584)ACC>ACA	p.T528T	TAX1BP1_uc011jzo.1_Silent_p.T528T|TAX1BP1_uc003szk.2_Silent_p.T528T|TAX1BP1_uc011jzp.1_Silent_p.T371T	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	528	Potential.				anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			GTGAAATGACCAAAGAAATTG	0.318													19	425					0.00152264	0.00423259	0.00152264	1	0
CREB5	9586	broad.mit.edu	37	7	28534529	28534529	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:28534529C>T	uc003szq.2	+	3	471	c.81C>T	c.(79-81)TTC>TTT	p.F27F	CREB5_uc003szo.2_5'UTR|CREB5_uc003szr.2_Silent_p.F20F	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	27	C2H2-type.				positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						GACAGCGCTTCCCAACAGAGG	0.363													54	289					0	0	0.00361006	0	0
CREB5	9586	broad.mit.edu	37	7	28763871	28763871	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:28763871C>T	uc003szq.2	+	7	1014	c.624C>T	c.(622-624)ATC>ATT	p.I208I	CREB5_uc003szo.2_Silent_p.I175I|CREB5_uc003szr.2_Silent_p.I201I|CREB5_uc003szs.2_Silent_p.I69I|CREB5_uc011jzr.1_Silent_p.I57I	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	208					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						ACTCCAGCATCATGGGGATGC	0.453													18	117					0	0	0.00121646	0	0
SCRN1	9805	broad.mit.edu	37	7	29976306	29976307	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:29976306_29976307GG>AA	uc010kvp.2	-	5	974_975	c.770_771CC>TT	c.(769-771)ACC>ATT	p.T257I	SCRN1_uc011jzy.1_Missense_Mutation_p.T189I|SCRN1_uc003tak.2_Missense_Mutation_p.T257I|SCRN1_uc011jzz.1_Missense_Mutation_p.T257I|SCRN1_uc011kaa.1_Missense_Mutation_p.T277I|SCRN1_uc011jzw.1_Missense_Mutation_p.T124I|SCRN1_uc011jzx.1_Missense_Mutation_p.T80I	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	257					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						TGTCCCGTAAGGTGTTCATCAT	0.406													19	120					0	0	6.4e-05	0	0
GARS	2617	broad.mit.edu	37	7	30661969	30661969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:30661969G>A	uc003tbm.2	+	12	1861	c.1504G>A	c.(1504-1506)GGA>AGA	p.G502R		NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	502					cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	ACCCAGTAAGGGAGCAATTGG	0.403													7	89					0	0	0.00198382	0	0
FAM188B	84182	broad.mit.edu	37	7	30830930	30830930	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:30830930C>T	uc003tbt.2	+	5	890	c.813C>T	c.(811-813)TCC>TCT	p.S271S	FAM188B_uc010kwe.2_Silent_p.S242S	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	271											0						CCAGGACCTCCCTGGGTCAGC	0.607													5	43					0	0	0.000602214	0	0
AQP1	358	broad.mit.edu	37	7	30951875	30951875	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:30951875C>T	uc003tbv.1	+	1	408	c.351C>T	c.(349-351)TCC>TCT	p.S117S	AQP1_uc011kac.1_Silent_p.S177S	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	117	Extracellular.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	GCATCACCTCCTCCCTGACTG	0.567													5	63					0	0	0.00116845	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31124449	31124449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:31124449G>A	uc003tca.1	+	8	759	c.536G>A	c.(535-537)CGG>CAG	p.R179Q	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.R158Q|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.R179Q|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.R179Q|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.R179Q|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	179	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						TGTCGCTTCCGGTGAGACCCT	0.532													8	55					0	0	0.00307968	0	0
PDE1C	5137	broad.mit.edu	37	7	31855584	31855584	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:31855584C>T	uc003tcm.1	-	15	2236	c.1767G>A	c.(1765-1767)GGG>GGA	p.G589G	PDE1C_uc003tcn.1_Silent_p.G589G|PDE1C_uc003tco.1_Silent_p.G649G|PDE1C_uc003tcr.2_Silent_p.G589G|PDE1C_uc003tcs.2_Silent_p.G589G	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	589					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGGAGTTTTTCCCACGAGGGT	0.458													13	99					0	0	0.00316338	0	0
KBTBD2	25948	broad.mit.edu	37	7	32909888	32909889	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:32909888_32909889GG>AA	uc003tdb.2	-	4	1599_1600	c.940_941CC>TT	c.(940-942)CCT>TTT	p.P314F	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	314											0			GBM - Glioblastoma multiforme(11;0.0499)			ATCATTATCAGGAGTTACAACG	0.411													14	78					0	0	6.4e-05	0	0
BBS9	27241	broad.mit.edu	37	7	33397504	33397504	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:33397504C>T	uc003tdn.1	+	16	2103	c.1590C>T	c.(1588-1590)CCC>CCT	p.P530P	BBS9_uc003tdo.1_Silent_p.P495P|BBS9_uc003tdp.1_Silent_p.P525P|BBS9_uc003tdq.1_Silent_p.P490P|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_Silent_p.P54P|BBS9_uc003tds.1_5'UTR|BBS9_uc011kao.1_Silent_p.P408P	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	530					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			TTAGACTTCCCCTAAAGTTAA	0.348									Bardet-Biedl_syndrome				23	148					0	0	0.00395357	0	0
NPSR1	387129	broad.mit.edu	37	7	34698142	34698142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:34698142G>A	uc003teg.1	+	1	246	c.118G>A	c.(118-120)GAA>AAA	p.E40K	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.E40K|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.E40K|NPSR1_uc003tei.1_Missense_Mutation_p.E40K|NPSR1_uc010kww.1_Missense_Mutation_p.E40K|NPSR1_uc011kar.1_Missense_Mutation_p.E40K	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	40	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GGAAGGAAAGGAATGGGGTTC	0.478													6	43					0	0	0.00198382	0	0
NPSR1	387129	broad.mit.edu	37	7	34851456	34851456	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:34851456C>T	uc003teg.1	+	4	587	c.459C>T	c.(457-459)CCC>CCT	p.P153P	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.P153P|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Silent_p.P153P|NPSR1_uc010kww.1_Silent_p.P142P|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	153	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TCGTCTACCCCATGAAGTTCC	0.463													21	84					0	0	0.000720815	0	0
DPY19L1	23333	broad.mit.edu	37	7	35050162	35050162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:35050162G>A	uc003tem.3	-	6	608	c.463C>T	c.(463-465)CCT>TCT	p.P155S		NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	155						integral to membrane					0						AAGCAAGCAGGATCTCCCAAT	0.264													17	95					0	0	0.000566183	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35144271	35144271	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:35144271C>T	uc003teq.1	-	18	1944	c.837G>A	c.(835-837)TTG>TTA	p.L279L	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						GAGAGCATATCAAGGAAGCCA	0.378													8	56					0	0	0.00307968	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35171960	35171960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:35171960C>T	uc003teq.1	-	12	1474	c.367G>A	c.(367-369)GAA>AAA	p.E123K	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TTTTGAATTTCATTTCTCTTT	0.239													6	24					0	0	0.00307968	0	0
HERPUD2	64224	broad.mit.edu	37	7	35707140	35707140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:35707140G>A	uc003tet.2	-	4	1203	c.398C>T	c.(397-399)GCT>GTT	p.A133V	HERPUD2_uc003tes.3_Missense_Mutation_p.A133V	NM_022373	NP_071768	Q9BSE4	HERP2_HUMAN	HERPUD family member 2	133	Ser-rich.				response to unfolded protein	integral to membrane				ovary(3)	3						AGAACCCACAGCTAAAGACAA	0.398													15	77					0	0	0.00316338	0	0
SEPT7	989	broad.mit.edu	37	7	35923579	35923579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:35923579C>T	uc010kxc.2	+	8	995	c.802C>T	c.(802-804)CCT>TCT	p.P268S	SEPT7_uc011kat.1_Missense_Mutation_p.P267S|SEPT7_uc011kau.1_Missense_Mutation_p.P232S|SEPT7_uc011kav.1_Missense_Mutation_p.P215S|SEPT7_uc003tey.2_Missense_Mutation_p.P116S	NM_001788	NP_001779	Q16181	SEPT7_HUMAN	cell division cycle 10 isoform 1	268					cilium morphogenesis|cytokinesis|mitosis|protein heterooligomerization|regulation of embryonic cell shape	cilium axoneme|cleavage furrow|condensed chromosome kinetochore|midbody|nucleus|septin complex|spindle|stress fiber	GTP binding|protein binding|structural molecule activity				0						AAGGCAGTATCCTTGGGGTGT	0.338													12	55					0	0	0.00244969	0	0
ELMO1	9844	broad.mit.edu	37	7	37283994	37283994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:37283994C>T	uc003tfk.1	-	7	723	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	ELMO1_uc011kbc.1_Missense_Mutation_p.R43Q|ELMO1_uc010kxg.1_Missense_Mutation_p.R139Q	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	139					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TTTCTGGTATCGCCTGCAAAA	0.343													22	164					0	0	0.000720815	0	0
TXNDC3	51314	broad.mit.edu	37	7	37901712	37901712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:37901712G>A	uc003tfn.2	+	7	725	c.353G>A	c.(352-354)AGA>AAA	p.R118K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	118	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GATGAGGAGAGAAAAATTGCA	0.338									Kartagener_syndrome				9	35					0	0	0.000442599	0	0
AMPH	273	broad.mit.edu	37	7	38433715	38433715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:38433715G>A	uc003tgu.2	-	18	1567	c.1498C>T	c.(1498-1500)CCT>TCT	p.P500S	AMPH_uc003tgv.2_Missense_Mutation_p.P458S|AMPH_uc003tgt.2_Missense_Mutation_p.P385S|AMPH_uc003tgw.1_Missense_Mutation_p.P523S|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	500					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						TCCCCGGCAGGGACAGTGGCC	0.572													15	80					0	0	0.000422831	0	0
AMPH	273	broad.mit.edu	37	7	38574563	38574563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:38574563C>T	uc003tgu.2	-	2	187	c.118G>A	c.(118-120)GAA>AAA	p.E40K	AMPH_uc003tgv.2_Missense_Mutation_p.E40K	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	40	BAR.|Potential.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						ACATATTCTTCGAACTGTTCG	0.338													12	66					0	0	0.00185496	0	0
VPS41	27072	broad.mit.edu	37	7	38791813	38791813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:38791813G>A	uc003tgy.2	-	22	1915	c.1889C>T	c.(1888-1890)CCC>CTC	p.P630L	VPS41_uc003tgz.2_Missense_Mutation_p.P605L|VPS41_uc010kxn.2_Missense_Mutation_p.P541L	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	630	Clathrin.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						TCGGAGAAAGGGAAGTAAGTT	0.433													13	99					0	0	0.00136819	0	0
POU6F2	11281	broad.mit.edu	37	7	39247115	39247115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:39247115G>A	uc003thb.1	+	4	449	c.407G>A	c.(406-408)GGA>GAA	p.G136E	POU6F2_uc010kxo.2_Missense_Mutation_p.G128E	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	136					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GGCCAGCAAGGACTGGTTCTC	0.597													8	55					0	0	0.00307968	0	0
POU6F2	11281	broad.mit.edu	37	7	39504282	39504282	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:39504282C>T	uc003thb.1	+	10	2115	c.2073C>T	c.(2071-2073)TCC>TCT	p.S691S		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	691					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						AAGAAAACTCCTAAAGAGATG	0.433													5	14					0	0	0.000602214	0	0
CDK13	8621	broad.mit.edu	37	7	40037154	40037154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:40037154C>T	uc003thh.3	+	3	2215	c.1933C>T	c.(1933-1935)CTT>TTT	p.L645F	CDK13_uc003thi.3_Missense_Mutation_p.L645F|CDK13_uc011kbf.1_Missense_Mutation_p.L31F	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	645					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						ACTCCGATGTCTTCTTGCTGA	0.368													28	197					0	0	0.00209593	0	0
INHBA	3624	broad.mit.edu	37	7	41729597	41729597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:41729597C>T	uc003thq.2	-	2	1167	c.932G>A	c.(931-933)GGC>GAC	p.G311D	INHBA_uc003thr.2_Missense_Mutation_p.G311D	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	311					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						ACACTCCAAGCCCCGCCGACG	0.478										TSP Lung(11;0.080)			10	97					0	0	0.00185496	0	0
INHBA	3624	broad.mit.edu	37	7	41730140	41730140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:41730140C>T	uc003thq.2	-	2	624	c.389G>A	c.(388-390)GGA>GAA	p.G130E	INHBA_uc003thr.2_Missense_Mutation_p.G130E	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	130					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CCTGGCTGTTCCTGAAGATGA	0.478										TSP Lung(11;0.080)			5	18					0	0	0.000602214	0	0
MRPS24	64951	broad.mit.edu	37	7	43906466	43906466	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:43906466G>A	uc003tit.1	-	4	387	c.336C>T	c.(334-336)CGC>CGT	p.R112R		NM_032014	NP_114403	Q96EL2	RT24_HUMAN	mitochondrial ribosomal protein S24 precursor	112					translation	mitochondrial large ribosomal subunit|mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						GGTTACCCCGGCGCTTTAAAA	0.552													9	44					0	0	0.000274275	0	0
URGCP	55665	broad.mit.edu	37	7	43918118	43918118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:43918118G>A	uc003tiw.2	-	6	1001	c.944C>T	c.(943-945)TCC>TTC	p.S315F	URGCP_uc003tiu.2_Missense_Mutation_p.S272F|URGCP_uc003tiv.2_Missense_Mutation_p.S240F|URGCP_uc003tix.2_Missense_Mutation_p.S306F|URGCP_uc003tiy.2_Missense_Mutation_p.S272F|URGCP_uc003tiz.2_Missense_Mutation_p.S272F|URGCP_uc011kbj.1_Missense_Mutation_p.S272F	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	315					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						AAAAAACCAGGAAATTTCTAC	0.562													6	50					0	0	0.00116845	0	0
NPC1L1	29881	broad.mit.edu	37	7	44553248	44553248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:44553248C>T	uc003tlb.2	-	20	3934	c.3878G>A	c.(3877-3879)GGG>GAG	p.G1293E	NPC1L1_uc003tlc.2_Missense_Mutation_p.G1266E|NPC1L1_uc011kbw.1_Missense_Mutation_p.G1220E|NPC1L1_uc003tla.2_Silent_p.T99T	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1293	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AACGTCAGGCCCTGCGGAGAG	0.612													6	38					0	0	0.00198382	0	0
OGDH	4967	broad.mit.edu	37	7	44713424	44713424	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:44713424C>T	uc003tln.2	+	6	781	c.672C>T	c.(670-672)TTC>TTT	p.F224F	OGDH_uc003tlm.2_Silent_p.F224F|OGDH_uc011kbx.1_Silent_p.F220F|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Silent_p.F235F|OGDH_uc011kbz.1_Intron|OGDH_uc003tlo.1_Silent_p.F57F	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	224					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	AGTTCATGTTCATCAATGACC	0.517													13	82					0	0	0.00316338	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44805143	44805143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:44805143C>T	uc003tlr.2	+	16	2330	c.2207C>T	c.(2206-2208)CCC>CTC	p.P736L	ZMIZ2_uc003tlq.2_Missense_Mutation_p.P678L|ZMIZ2_uc003tls.2_Missense_Mutation_p.P710L|ZMIZ2_uc003tlt.2_Missense_Mutation_p.P359L|ZMIZ2_uc010kyj.2_Missense_Mutation_p.P258L|ZMIZ2_uc003tlu.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	736	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CTGCAGCCCCCCTCAGTCCCT	0.682													10	3					0	0	0.000978159	0	0
ADCY1	107	broad.mit.edu	37	7	45699648	45699648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:45699648C>T	uc003tne.3	+	7	1333	c.1315C>T	c.(1315-1317)CAT>TAT	p.H439Y	ADCY1_uc003tnd.2_Missense_Mutation_p.H214Y	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	439	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TAGGAAGGTTCATATCACAAA	0.522													11	59					0	0	0.000978159	0	0
PKD1L1	168507	broad.mit.edu	37	7	47879118	47879118	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:47879118G>A	uc003tny.1	-	36	5695	c.5695C>T	c.(5695-5697)CTG>TTG	p.L1899L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1899	PLAT.|Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CCGGCAGACAGCCAGCACTGG	0.662													3	12					0	0	0.00024832	0	0
PKD1L1	168507	broad.mit.edu	37	7	47925613	47925613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:47925613C>T	uc003tny.1	-	18	2876	c.2876G>A	c.(2875-2877)GGA>GAA	p.G959E		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	959	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGCACCGAGTCCCAGCGAGCC	0.478													11	72					0	0	0.000978159	0	0
PKD1L1	168507	broad.mit.edu	37	7	47947802	47947802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:47947802C>T	uc003tny.1	-	9	1274	c.1274G>A	c.(1273-1275)GGA>GAA	p.G425E		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	425	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CACTTCGGTTCCATGAAACTC	0.418													10	57					0	0	0.00136819	0	0
PKD1L1	168507	broad.mit.edu	37	7	47969010	47969010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:47969010C>T	uc003tny.1	-	7	851	c.851G>A	c.(850-852)CGA>CAA	p.R284Q		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	284	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ATCAGAATTTCGAGCTAGGAT	0.537													25	77					0	0	0.00395357	0	0
ABCA13	154664	broad.mit.edu	37	7	48427452	48427452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:48427452C>T	uc003toq.2	+	36	11394	c.11369C>T	c.(11368-11370)CCC>CTC	p.P3790L	ABCA13_uc010kys.1_Missense_Mutation_p.P864L|ABCA13_uc003tos.1_Missense_Mutation_p.P616L|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3790					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGGTATTTCCCCTTTACTGCC	0.313													5	38					0	0	0.000602214	0	0
ZPBP	11055	broad.mit.edu	37	7	49977183	49977183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:49977183C>T	uc003tou.2	-	8	1067	c.997G>A	c.(997-999)GGA>AGA	p.G333R	ZPBP_uc011kci.1_Missense_Mutation_p.G259R|ZPBP_uc010kyw.2_Missense_Mutation_p.G332R	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	333					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					CAATGAATTCCATCACGGGGG	0.328													14	101					0	0	0.00121646	0	0
IKZF1	10320	broad.mit.edu	37	7	50444346	50444346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:50444346G>A	uc003tow.3	+	5	444	c.276G>A	c.(274-276)ATG>ATA	p.M92I	IKZF1_uc003tox.3_Missense_Mutation_p.M92I|IKZF1_uc003toy.3_Missense_Mutation_p.M92I|IKZF1_uc011kck.1_Intron|IKZF1_uc003toz.3_Missense_Mutation_p.M62I|IKZF1_uc010kyx.2_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	92					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GAGAGAAAATGAATGGCTCCC	0.488			D		ALL								12	46					0	0	0.00185496	0	0
IKZF1	10320	broad.mit.edu	37	7	50459490	50459490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:50459490G>A	uc003tow.3	+	8	947	c.779G>A	c.(778-780)AGA>AAA	p.R260K	IKZF1_uc003tox.3_Missense_Mutation_p.R218K|IKZF1_uc003toy.3_Missense_Mutation_p.R218K|IKZF1_uc011kck.1_Missense_Mutation_p.R173K|IKZF1_uc003toz.3_Missense_Mutation_p.R230K|IKZF1_uc010kyx.2_Intron|IKZF1_uc003tpa.3_Missense_Mutation_p.R12K	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	260					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GGATCAGAGAGATCTCTCGTG	0.413			D		ALL								9	64					0	0	0.00136819	0	0
FIGNL1	63979	broad.mit.edu	37	7	50513288	50513288	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:50513288G>A	uc003tpc.2	-	4	2075	c.1698C>T	c.(1696-1698)CCC>CCT	p.P566P	FIGNL1_uc003tpb.2_Silent_p.P455P|FIGNL1_uc003tpd.2_Silent_p.P566P|FIGNL1_uc003tpe.2_Silent_p.P566P|FIGNL1_uc010kyy.2_Silent_p.P566P	NM_001042762	NP_001036227	Q6PIW4	FIGL1_HUMAN	fidgetin-like 1	566					ATP metabolic process|negative regulation of apoptosis|osteoblast differentiation|osteoblast proliferation|regulation of cell cycle	cytoplasm|nucleus	ATP binding|magnesium ion binding|nucleoside-triphosphatase activity			ovary(3)	3	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;3.73e-08)|all_hematologic(4;7.51e-06)				CTTCTGGGAGGGGAATATAAA	0.438													18	69					0	0	0.000958276	0	0
FIGNL1	63979	broad.mit.edu	37	7	50514458	50514458	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:50514458G>A	uc003tpc.2	-	4	905	c.528C>T	c.(526-528)TTC>TTT	p.F176F	FIGNL1_uc003tpb.2_Silent_p.F65F|FIGNL1_uc003tpd.2_Silent_p.F176F|FIGNL1_uc003tpe.2_Silent_p.F176F|FIGNL1_uc010kyy.2_Silent_p.F176F	NM_001042762	NP_001036227	Q6PIW4	FIGL1_HUMAN	fidgetin-like 1	176					ATP metabolic process|negative regulation of apoptosis|osteoblast differentiation|osteoblast proliferation|regulation of cell cycle	cytoplasm|nucleus	ATP binding|magnesium ion binding|nucleoside-triphosphatase activity			ovary(3)	3	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;3.73e-08)|all_hematologic(4;7.51e-06)				TGCTCTCCGGGAAGTCTTGGG	0.468													33	172					0	0	0.00111076	0	0
COBL	23242	broad.mit.edu	37	7	51111157	51111157	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:51111157G>A	uc003tpr.3	-	8	1514	c.1329C>T	c.(1327-1329)GAC>GAT	p.D443D	COBL_uc003tps.2_Silent_p.D500D|COBL_uc011kcl.1_Silent_p.D443D|COBL_uc010kzc.2_Silent_p.D443D|COBL_uc003tpp.3_Silent_p.D229D|COBL_uc003tpq.3_Silent_p.D384D	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	443										skin(3)|ovary(2)	5	Glioma(55;0.08)					TTCCAGCGAGGTCCTGGTCAC	0.567													13	58					0	0	0.00316338	0	0
LOC442308	442308	broad.mit.edu	37	7	55713524	55713524	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:55713524G>A	uc010kzj.2	+	1		c.213G>A				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						TAGAACCTGGGACCATGGACT	0.537													11	67					0	0	0.00244969	0	0
ZNF107	51427	broad.mit.edu	37	7	64166713	64166713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:64166713C>T	uc003ttd.2	+	7	817	c.31C>T	c.(31-33)CAT>TAT	p.H11Y	ZNF107_uc003tte.2_Missense_Mutation_p.H11Y	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				AATGTCTTTTCATTTTGCCCA	0.299													9	94					0	0	0.000978159	0	0
ZNF138	7697	broad.mit.edu	37	7	64291840	64291840	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:64291840C>T	uc011kdp.1	+	5	533	c.357C>T	c.(355-357)CTC>CTT	p.L119L	ZNF138_uc003ttg.2_Missense_Mutation_p.R17C|ZNF138_uc011kdq.1_Missense_Mutation_p.R48C|ZNF138_uc003tth.2_RNA|ZNF138_uc010kzs.2_Missense_Mutation_p.R42C	NM_001160183	NP_001153655	B4DFX2	B4DFX2_HUMAN	zinc finger protein 138 isoform 2	119					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding				0		Lung NSC(55;0.0795)|all_lung(88;0.18)				TCTGTGTTCTCGTTTTGCCCA	0.333													17	101					0	0	0.00074312	0	0
ZNF273	10793	broad.mit.edu	37	7	64388601	64388601	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:64388601T>C	uc003tto.2	+	4	971	c.895T>C	c.(895-897)TTT>CTT	p.F299L	ZNF273_uc003ttl.2_Missense_Mutation_p.F234L|ZNF273_uc003ttn.2_Missense_Mutation_p.F234L	NM_021148	NP_066971	Q14593	ZN273_HUMAN	zinc finger protein 273	299	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(55;0.0295)|all_lung(88;0.0691)				TGGCAAAGTCTTTAGTGTATT	0.328													8	58					0	0	0.000274275	0	0
SBDS	51119	broad.mit.edu	37	7	66456124	66456124	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:66456124G>A	uc003tvm.1	-	4	808	c.624C>T	c.(622-624)ATC>ATT	p.I208I		NM_016038	NP_057122	Q9Y3A5	SBDS_HUMAN	Shwachman-Bodian-Diamond syndrome protein	208					bone marrow development|bone mineralization|leukocyte chemotaxis|mature ribosome assembly|mitotic spindle stabilization|positive regulation of translation|ribosomal large subunit biogenesis|rRNA processing	cytoplasm|nucleolus|nucleoplasm|spindle pole	microtubule binding|ribosome binding|rRNA binding			ovary(1)	1						TGACTCTTACGATTTCTAACT	0.338			Gene Conversion			AML|MDS			Shwachman-Diamond_syndrome				10	86					0	0	0.000673444	0	0
TYW1	55253	broad.mit.edu	37	7	66489954	66489955	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:66489954_66489955CC>TT	uc003tvn.2	+	7	1078_1079	c.929_930CC>TT	c.(928-930)TCC>TTT	p.S310F	TYW1_uc010lai.2_RNA	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	310					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				AGCCTAAATTCCATTGTTGATG	0.426													9	103					0	0	6.4e-05	0	0
AUTS2	26053	broad.mit.edu	37	7	69364339	69364339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:69364339G>A	uc003tvw.3	+	2	1120	c.377G>A	c.(376-378)CGA>CAA	p.R126Q	AUTS2_uc003tvv.3_Missense_Mutation_p.R126Q|AUTS2_uc003tvx.3_Missense_Mutation_p.R126Q	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	126										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		AAGAAGAAACGAGAAGCACTT	0.483													6	48					0	0	0.00307968	0	0
AUTS2	26053	broad.mit.edu	37	7	70255391	70255391	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:70255391C>T	uc003tvw.3	+	19	3932	c.3189C>T	c.(3187-3189)TAC>TAT	p.Y1063Y	AUTS2_uc003tvx.3_Silent_p.Y1039Y|AUTS2_uc011keg.1_Silent_p.Y515Y	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	1063										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		GCTTCCCGTACCCTTCTTTCC	0.612													13	5					0	0	0.00136819	0	0
WBSCR17	64409	broad.mit.edu	37	7	70886063	70886063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:70886063G>A	uc003tvy.2	+	5	934	c.934G>A	c.(934-936)GAC>AAC	p.D312N	WBSCR17_uc003tvz.2_Missense_Mutation_p.D11N	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	312	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				AGACTGGTGGGACGCCGGAGA	0.592													9	26					0	0	0.000274275	0	0
WBSCR17	64409	broad.mit.edu	37	7	71130578	71130578	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:71130578G>A	uc003tvy.2	+	7	1263	c.1263G>A	c.(1261-1263)CTG>CTA	p.L421L	WBSCR17_uc003tvz.2_Silent_p.L120L	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	421	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				ACCTGCCGCTGGAGGTAGGGA	0.478													29	11					0	0	0.00283554	0	0
CALN1	83698	broad.mit.edu	37	7	71275406	71275406	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:71275406C>T	uc003twa.3	-	5	974	c.447G>A	c.(445-447)ACG>ACA	p.T149T	CALN1_uc003twb.3_Silent_p.T191T|CALN1_uc003twc.3_Silent_p.T149T	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	149	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				TGTCCTTCATCGTTAGGTGGT	0.463													13	116					0	0	0.00244969	0	0
POM121	9883	broad.mit.edu	37	7	72409160	72409160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:72409160C>T	uc003twk.2	+	6	1307	c.1307C>T	c.(1306-1308)CCC>CTC	p.P436L	POM121_uc003twj.2_Missense_Mutation_p.P171L|POM121_uc010lam.1_Missense_Mutation_p.P171L	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	436	Ser-rich.|Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				AGTTCATCACCCTTCTCTAGC	0.507													29	188					0	0	0.00283554	0	0
POM121	9883	broad.mit.edu	37	7	72413896	72413896	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:72413896A>G	uc003twk.2	+	11	3364	c.3364A>G	c.(3364-3366)ACC>GCC	p.T1122A	POM121_uc003twj.2_Missense_Mutation_p.T857A|POM121_uc010lam.1_Missense_Mutation_p.T857A	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1122	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				AGGCTCCAGCACCACCACCGG	0.637													3	36					0	0	6.4e-05	0	0
NCF1B	654816	broad.mit.edu	37	7	72639930	72639931	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:72639930_72639931GG>AA	uc011kes.1	+	3	165_166	c.161_162GG>AA	c.(160-162)TGG>TAA	p.W54*	FKBP6_uc003twz.2_Intron|NCF1B_uc011ker.1_Nonsense_Mutation_p.W56*	NM_000265	NP_000256			neutrophil cytosolic factor 1												0						GCTCCCAAGTGGTTTGACGGGC	0.668													6	22					0	0	6.4e-05	0	0
NSUN5	55695	broad.mit.edu	37	7	72717711	72717711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:72717711G>A	uc003txw.2	-	9	1208	c.1172C>T	c.(1171-1173)CCC>CTC	p.P391L	FKBP6_uc003twz.2_Intron|NSUN5_uc003txv.2_Missense_Mutation_p.P391L|NSUN5_uc003txx.2_Missense_Mutation_p.P353L|NSUN5_uc011kev.1_Missense_Mutation_p.P391L	NM_018044	NP_060514	Q96P11	NSUN5_HUMAN	NOL1/NOP2/Sun domain family, member 5 isoform 2	391							methyltransferase activity				0		Lung NSC(55;0.163)				GCCTCGGTGGGGCCAGGCAGG	0.667													9	20					0	0	0.000442599	0	0
BAZ1B	9031	broad.mit.edu	37	7	72907212	72907212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:72907212G>A	uc003tyc.2	-	5	956	c.611C>T	c.(610-612)TCA>TTA	p.S204L		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	204	Mediates the tyrosine-protein kinase activity.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				TTTTTTTAATGAAGTAGGAAG	0.318													19	140					0	0	0.00332997	0	0
MLXIPL	51085	broad.mit.edu	37	7	73013920	73013920	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:73013920A>T	uc003tyn.1	-	8	1055	c.1007T>A	c.(1006-1008)CTG>CAG	p.L336Q	MLXIPL_uc003tyj.1_5'Flank|MLXIPL_uc003tyk.1_Missense_Mutation_p.L336Q|MLXIPL_uc003tyl.1_Missense_Mutation_p.L336Q|MLXIPL_uc003tym.1_Missense_Mutation_p.L336Q|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.L243Q|MLXIPL_uc003tyq.1_Missense_Mutation_p.L78Q	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	336					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				CTCTGGGCCCAGGGTCCCACT	0.657													10	58					0	0	0.000673444	0	0
VPS37D	155382	broad.mit.edu	37	7	73085385	73085385	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:73085385G>A	uc003tyr.2	+	4	550	c.435G>A	c.(433-435)GAG>GAA	p.E145E		NM_001077621	NP_001071089	Q86XT2	VP37D_HUMAN	vacuolar protein sorting 37D	145	VPS37 C-terminal.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0		Lung NSC(55;0.0908)|all_lung(88;0.198)				AAAGCCTGGAGGCCTTCCTGC	0.692													5	48					0	0	0.000602214	0	0
CLDN4	1364	broad.mit.edu	37	7	73245869	73245869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:73245869C>T	uc003tzi.3	+	1	677	c.338C>T	c.(337-339)GCC>GTC	p.A113V	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	113	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				GATGAAAGCGCCAAGGCCAAG	0.622													7	27					0	0	0.000274275	0	0
WBSCR28	135886	broad.mit.edu	37	7	73279510	73279510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:73279510C>T	uc003tzk.2	+	2	296	c.260C>T	c.(259-261)CCC>CTC	p.P87L	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_5'UTR	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	87	Helical; (Potential).					integral to membrane				breast(1)	1		Lung NSC(55;0.159)				ATACAGGTCCCCGTATGGCTG	0.692													5	40					0	0	0.000602214	0	0
LIMK1	3984	broad.mit.edu	37	7	73520478	73520478	+	Silent	SNP	G	A	A	rs55770268		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:73520478G>A	uc003uaa.1	+	7	951	c.786G>A	c.(784-786)CTG>CTA	p.L262L	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Silent_p.L228L|LIMK1_uc003uac.1_Silent_p.L54L	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	262					actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				ACGATACACTGGGCCACGGGC	0.632													88	50					0	0	0.00361006	0	0
CLIP2	7461	broad.mit.edu	37	7	73790984	73790984	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:73790984C>T	uc003uam.2	+	10	2580	c.2253C>T	c.(2251-2253)TTC>TTT	p.F751F	CLIP2_uc003uan.2_Silent_p.F716F|CLIP2_uc003uao.2_Silent_p.F145F	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	751	Potential.					microtubule associated complex				skin(3)	3						CTATCGAGTTCCTCAAGGAGC	0.637													5	52					0	0	0.00307968	0	0
POM121C	100101267	broad.mit.edu	37	7	75068439	75068440	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:75068439_75068440GG>TT	uc010lde.1	-	4	1016_1017	c.1016_1017CC>AA	c.(1015-1017)CCC>CAA	p.P339Q	POM121C_uc003udk.3_Missense_Mutation_p.P97Q			A8CG34	P121C_HUMAN	Homo sapiens POM121-2 mRNA for nuclear pore membrane protein 121-2, partial cds.	339	Required for targeting to the nucleus and nuclear pore complex.|Pore side (Potential).|Ser-rich.				mRNA transport|protein transport|transmembrane transport	endoplasmic reticulum membrane|nuclear membrane|nuclear pore	protein binding				0						CAAAAGAAGCGGGGACTCCACT	0.47													7	197					0	0	6.4e-05	0	0
STYXL1	51657	broad.mit.edu	37	7	75634642	75634642	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:75634642G>A	uc003uej.3	-	6	707	c.534C>T	c.(532-534)GAC>GAT	p.D178D	STYXL1_uc003uef.2_5'UTR|STYXL1_uc011kgf.1_Silent_p.D40D|STYXL1_uc011kgg.1_Silent_p.D30D|STYXL1_uc003ueh.2_Silent_p.D40D|STYXL1_uc003uek.3_Silent_p.D82D|STYXL1_uc003uel.2_Silent_p.D178D|STYXL1_uc003uem.2_Silent_p.D178D|STYXL1_uc010ldg.1_RNA|STYXL1_uc010ldh.1_Silent_p.D178D|STYXL1_uc003uen.1_Silent_p.D178D	NM_016086	NP_057170	Q9Y6J8	STYL1_HUMAN	map kinase phosphatase-like protein MK-STYX	178	Tyrosine-protein phosphatase.				intracellular signal transduction|protein dephosphorylation	intracellular	protein binding|protein tyrosine/serine/threonine phosphatase activity				0						GAATCTTGGGGTCACAGGCTT	0.433													13	93					0	0	0.00316338	0	0
MAGI2	9863	broad.mit.edu	37	7	77824279	77824279	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:77824279G>A	uc003ugx.2	-	12	2435	c.2181C>T	c.(2179-2181)TCC>TCT	p.S727S	MAGI2_uc003ugy.2_Silent_p.S727S|MAGI2_uc010ldx.1_Silent_p.S336S|MAGI2_uc010ldy.1_Silent_p.S336S	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	727						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				AGTCAGGAAAGGAGCTCCTGT	0.517													8	76					0	0	0.000274275	0	0
MAGI2	9863	broad.mit.edu	37	7	77885265	77885265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:77885265C>T	uc003ugx.2	-	10	2296	c.2042G>A	c.(2041-2043)CGA>CAA	p.R681Q	MAGI2_uc003ugy.2_Missense_Mutation_p.R681Q|MAGI2_uc010ldx.1_Missense_Mutation_p.R290Q|MAGI2_uc010ldy.1_Missense_Mutation_p.R290Q|MAGI2_uc011kgr.1_Missense_Mutation_p.R513Q|MAGI2_uc011kgs.1_Missense_Mutation_p.R518Q	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	681	PDZ 3.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				CTTACCTCCTCGATGGATAAT	0.368													7	29					0	0	0.000274275	0	0
GNAT3	346562	broad.mit.edu	37	7	80117911	80117911	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:80117911G>A	uc011kgu.1	-	3	243	c.243C>T	c.(241-243)ATC>ATT	p.I81I	CD36_uc003uhc.2_Intron	NM_001102386	NP_001095856	A8MTJ3	GNAT3_HUMAN	guanine nucleotide binding protein, alpha	81					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction|sensory perception of sweet taste|sensory perception of umami taste	cytoplasm|heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						CAATAGCTAGGATGGATTGCA	0.358													5	15					0	0	0.00198382	0	0
CD36	948	broad.mit.edu	37	7	80301345	80301345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:80301345G>A	uc003uhc.2	+	14	1798	c.1114G>A	c.(1114-1116)GAT>AAT	p.D372N	CD36_uc003uhd.3_Missense_Mutation_p.D372N|CD36_uc011kgv.1_Missense_Mutation_p.D296N|CD36_uc003uhe.3_Missense_Mutation_p.D372N|CD36_uc003uhf.3_Missense_Mutation_p.D372N|CD36_uc003uhg.3_Missense_Mutation_p.D372N|CD36_uc003uhh.3_Missense_Mutation_p.D372N	NM_001127444	NP_001120916	P16671	CD36_HUMAN	CD36 antigen	372	Extracellular (Potential).				cell adhesion|cGMP-mediated signaling|cholesterol transport|lipid metabolic process|lipid storage|lipoprotein transport|low-density lipoprotein particle clearance|nitric oxide mediated signal transduction|plasma membrane long-chain fatty acid transport|platelet activation|platelet degranulation|positive regulation of cell-matrix adhesion|positive regulation of macrophage derived foam cell differentiation	integral to plasma membrane|membrane fraction|platelet alpha granule membrane	lipid binding|low-density lipoprotein receptor activity|thrombospondin receptor activity|transforming growth factor beta binding			ovary(1)	1						GACATACTTGGATATTGAACC	0.294													21	111					0	0	0.000878237	0	0
HGF	3082	broad.mit.edu	37	7	81386535	81386535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:81386535G>A	uc003uhl.2	-	4	617	c.452C>T	c.(451-453)CCC>CTC	p.P151L	HGF_uc003uhm.2_Missense_Mutation_p.P151L|HGF_uc003uhn.1_Missense_Mutation_p.P151L|HGF_uc003uho.1_Missense_Mutation_p.P151L|HGF_uc003uhp.2_Missense_Mutation_p.P151L	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	151	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						GGAACTCCAGGGCTGACATTT	0.398													14	86					0	0	0.000566183	0	0
PCLO	27445	broad.mit.edu	37	7	82544691	82544691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82544691G>A	uc003uhx.2	-	7	12900	c.12611C>T	c.(12610-12612)TCA>TTA	p.S4204L	PCLO_uc003uhv.2_Missense_Mutation_p.S4204L|PCLO_uc010lec.2_Missense_Mutation_p.S1169L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4135					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGAATAGGTGAAAATTTTGA	0.383													6	28					0	0	0.00116845	0	0
PCLO	27445	broad.mit.edu	37	7	82580168	82580168	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82580168G>A	uc003uhx.2	-	6	10025	c.9736C>T	c.(9736-9738)CGA>TGA	p.R3246*	PCLO_uc003uhv.2_Nonsense_Mutation_p.R3246*|PCLO_uc010lec.2_Nonsense_Mutation_p.R211*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3177	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTTGTTCTCGGAACCTTTGA	0.473													70	31					0	0	0.00361006	0	0
PCLO	27445	broad.mit.edu	37	7	82582185	82582185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82582185G>A	uc003uhx.2	-	5	8373	c.8084C>T	c.(8083-8085)TCC>TTC	p.S2695F	PCLO_uc003uhv.2_Missense_Mutation_p.S2695F|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2626					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AATTGTTATGGAAATGCTGCT	0.413													6	56					0	0	0.00116845	0	0
PCLO	27445	broad.mit.edu	37	7	82582551	82582551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82582551G>A	uc003uhx.2	-	5	8007	c.7718C>T	c.(7717-7719)TCC>TTC	p.S2573F	PCLO_uc003uhv.2_Missense_Mutation_p.S2573F|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2504					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAGGGATTTGGAAAATCTTGG	0.423													103	58					0	0	0.00361006	0	0
PCLO	27445	broad.mit.edu	37	7	82583913	82583913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82583913G>A	uc003uhx.2	-	5	6645	c.6356C>T	c.(6355-6357)TCG>TTG	p.S2119L	PCLO_uc003uhv.2_Missense_Mutation_p.S2119L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2050					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTGCTGGTCGAATCTGTAAG	0.418													8	40					0	0	0.000442599	0	0
PCLO	27445	broad.mit.edu	37	7	82584293	82584293	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82584293C>T	uc003uhx.2	-	5	6265	c.5976G>A	c.(5974-5976)AAG>AAA	p.K1992K	PCLO_uc003uhv.2_Silent_p.K1992K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1923					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAAGTCTTATCTTTTGCTCTC	0.383													27	208					0	0	0.001512	0	0
PCLO	27445	broad.mit.edu	37	7	82585021	82585021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82585021C>T	uc003uhx.2	-	5	5537	c.5248G>A	c.(5248-5250)GGA>AGA	p.G1750R	PCLO_uc003uhv.2_Missense_Mutation_p.G1750R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1681					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGCTCTCTCCTTTTTTGTGA	0.473													19	155					0	0	0.00229938	0	0
PCLO	27445	broad.mit.edu	37	7	82585284	82585284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82585284C>T	uc003uhx.2	-	5	5274	c.4985G>A	c.(4984-4986)GGA>GAA	p.G1662E	PCLO_uc003uhv.2_Missense_Mutation_p.G1662E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1593					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCGTAGCCCTCCTCCTCCAGT	0.368													59	46					0	0	0.00361006	0	0
PCLO	27445	broad.mit.edu	37	7	82585683	82585683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82585683C>T	uc003uhx.2	-	5	4875	c.4586G>A	c.(4585-4587)CGA>CAA	p.R1529Q	PCLO_uc003uhv.2_Missense_Mutation_p.R1529Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1460					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTAGTTCTTCGTTTTCTTTG	0.398													12	82					0	0	0.00136819	0	0
PCLO	27445	broad.mit.edu	37	7	82785047	82785047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82785047G>A	uc003uhx.2	-	2	1199	c.910C>T	c.(910-912)CCA>TCA	p.P304S	PCLO_uc003uhv.2_Missense_Mutation_p.P304S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGAATAGGTGGTTTGGATGGG	0.522													10	60					0	0	0.00244969	0	0
PCLO	27445	broad.mit.edu	37	7	82785193	82785193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:82785193C>T	uc003uhx.2	-	2	1053	c.764G>A	c.(763-765)GGA>GAA	p.G255E	PCLO_uc003uhv.2_Missense_Mutation_p.G255E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	255	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AATTGGCTTTCCTGTACCTGG	0.478													9	59					0	0	0.000673444	0	0
SEMA3E	9723	broad.mit.edu	37	7	83029428	83029428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:83029428C>T	uc003uhy.1	-	11	1748	c.1282G>A	c.(1282-1284)GAT>AAT	p.D428N		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	428	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				TATTTTCCATCTGTTTTTACC	0.403													10	87					0	0	0.000978159	0	0
SEMA3E	9723	broad.mit.edu	37	7	83029548	83029548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:83029548C>T	uc003uhy.1	-	11	1628	c.1162G>A	c.(1162-1164)GGA>AGA	p.G388R		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	388	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				TATCTCCCTCCATTTACTTTG	0.383													6	66					0	0	0.00198382	0	0
GRM3	2913	broad.mit.edu	37	7	86394792	86394792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:86394792G>A	uc003uid.2	+	2	1430	c.331G>A	c.(331-333)GAG>AAG	p.E111K	GRM3_uc010lef.2_Missense_Mutation_p.E109K|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	111	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GCAATCACTGGAGTTTGTCAG	0.418													6	41					0	0	0.00198382	0	0
GRM3	2913	broad.mit.edu	37	7	86468214	86468214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:86468214G>A	uc003uid.2	+	4	2483	c.1384G>A	c.(1384-1386)GGA>AGA	p.G462R	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.G334R|GRM3_uc010leh.2_Missense_Mutation_p.G54R	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	462	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TTTTGGAGATGGAATGGGGCG	0.378													14	11					0	0	0.000566183	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86509846	86509846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:86509846C>T	uc011kha.1	-	22	3216	c.3031G>A	c.(3031-3033)GAA>AAA	p.E1011K	KIAA1324L_uc003uif.1_Missense_Mutation_p.E771K|KIAA1324L_uc011kgz.1_Missense_Mutation_p.E897K|KIAA1324L_uc003uie.2_Missense_Mutation_p.E844K	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	1011	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					TCTTCTTTTTCCTAAGAAAAA	0.333													9	54					0	0	0.000442599	0	0
ABCB1	5243	broad.mit.edu	37	7	87183229	87183229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:87183229C>T	uc003uiz.1	-	10	1265	c.847G>A	c.(847-849)GAA>AAA	p.E283K	ABCB1_uc011khc.1_Missense_Mutation_p.E219K	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	283	ABC transmembrane type-1 1.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CTTTTAGCTTCTTCTAAATTT	0.308													18	95					0	0	0.000958276	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87370852	87370852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:87370852C>T	uc003ujb.2	+	7	1048	c.637C>T	c.(637-639)CCT>TCT	p.P213S	RUNDC3B_uc011khd.1_Missense_Mutation_p.P196S|RUNDC3B_uc011khe.1_Missense_Mutation_p.P196S|RUNDC3B_uc003ujc.2_Missense_Mutation_p.P196S|RUNDC3B_uc003ujd.2_Missense_Mutation_p.P118S	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	213										skin(1)	1	Esophageal squamous(14;0.00164)					TGGCAGTTTTCCTGCTGTAAT	0.264													8	56					0	0	0.000442599	0	0
SLC25A40	55972	broad.mit.edu	37	7	87476285	87476285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:87476285G>A	uc003uje.2	-	8	961	c.610C>T	c.(610-612)CTT>TTT	p.L204F		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	204	Helical; Name=4; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					ACATCTCTAAGAACAGTAGGA	0.378													10	59					0	0	0.000673444	0	0
MGC26647	219557	broad.mit.edu	37	7	88423674	88423674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:88423674C>T	uc003ujv.2	-	2	765	c.583G>A	c.(583-585)GGA>AGA	p.G195R	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	195											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			TCGCCTGGTCCTTTAGTGCCT	0.448													6	41					0	0	0.00116845	0	0
C7orf63	79846	broad.mit.edu	37	7	89927075	89927076	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:89927075_89927076GG>TT	uc010lep.2	+	16	2039_2040	c.1788_1789GG>TT	c.(1786-1791)TTGGGA>TTTTGA	p.596_597LG>F*	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_Nonsense_Mutation_p.271_272LG>F*|C7orf63_uc011khj.1_Nonsense_Mutation_p.578_579LG>F*|C7orf63_uc011khk.1_Nonsense_Mutation_p.158_159LG>F*	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	596_597							binding			ovary(1)	1						GCTGTATTTTGGGATGTTATCC	0.287													9	208					0	0	6.4e-05	0	0
AKAP9	10142	broad.mit.edu	37	7	91651636	91651636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:91651636C>T	uc003ulg.2	+	13	4147	c.3922C>T	c.(3922-3924)CAT>TAT	p.H1308Y	AKAP9_uc003ule.2_Missense_Mutation_p.H1320Y|AKAP9_uc003ulf.2_Missense_Mutation_p.H1308Y|AKAP9_uc003uli.2_Missense_Mutation_p.H933Y	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1320					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TTTATCAATCCATTCTCAGAT	0.333			T	BRAF	papillary thyroid								24	154					0	0	0.00106085	0	0
AKAP9	10142	broad.mit.edu	37	7	91674501	91674501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:91674501C>T	uc003ulg.2	+	21	5567	c.5342C>T	c.(5341-5343)TCA>TTA	p.S1781L	AKAP9_uc003ulf.2_Missense_Mutation_p.S1781L|AKAP9_uc003uli.2_Missense_Mutation_p.S1406L	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1793					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TCTGTAAAGTCATGTGTCCAT	0.423			T	BRAF	papillary thyroid								16	73					0	0	0.000566183	0	0
AKAP9	10142	broad.mit.edu	37	7	91695830	91695830	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:91695830C>T	uc003ulg.2	+	26	6525	c.6300C>T	c.(6298-6300)TTC>TTT	p.F2100F	AKAP9_uc003ulf.2_Silent_p.F2100F|AKAP9_uc003uli.2_Silent_p.F1723F	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2112	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TTCCTCGATTCCAGCCTATCA	0.363			T	BRAF	papillary thyroid								13	104					0	0	0.00316338	0	0
PEX1	5189	broad.mit.edu	37	7	92129126	92129126	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:92129126G>A	uc003uly.2	-	16	2706	c.2610C>T	c.(2608-2610)CCC>CCT	p.P870P	PEX1_uc011khr.1_Silent_p.P662P|PEX1_uc010ley.2_Silent_p.P813P|PEX1_uc011khs.1_Silent_p.P548P|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	870					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TTTGTCGTATGGGCAAGTTTG	0.358													20	110					0	0	0.00152264	0	0
SAMD9	54809	broad.mit.edu	37	7	92734725	92734725	+	Missense_Mutation	SNP	G	A	A	rs147146654		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:92734725G>A	uc003umf.2	-	3	942	c.686C>T	c.(685-687)TCA>TTA	p.S229L	SAMD9_uc003umg.2_Missense_Mutation_p.S229L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	229						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			ATTGGTACGTGAATTCATACA	0.403													34	159					0	0	0.00327116	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764573	92764573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:92764573G>A	uc003umh.1	-	5	1928	c.712C>T	c.(712-714)CAT>TAT	p.H238Y	SAMD9L_uc003umj.1_Missense_Mutation_p.H238Y|SAMD9L_uc003umi.1_Missense_Mutation_p.H238Y|SAMD9L_uc010lfb.1_Missense_Mutation_p.H238Y|SAMD9L_uc003umk.1_Missense_Mutation_p.H238Y|SAMD9L_uc010lfc.1_Missense_Mutation_p.H238Y|SAMD9L_uc010lfd.1_Missense_Mutation_p.H238Y|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	238										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			ACTCCAAAATGGATGGTGCCA	0.418													8	53					0	0	0.00307968	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92826821	92826821	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:92826821C>T	uc003umm.2	-	5	1138	c.1115G>A	c.(1114-1116)TGG>TAG	p.W372*	HEPACAM2_uc003uml.2_Nonsense_Mutation_p.W360*|HEPACAM2_uc010lff.2_Nonsense_Mutation_p.W360*|HEPACAM2_uc011khy.1_Nonsense_Mutation_p.W395*	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	372	Helical; (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						ATATTTTTTCCATAGGAAGAG	0.308													5	55					0	0	0.000602214	0	0
CCDC132	55610	broad.mit.edu	37	7	92978030	92978030	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:92978030T>C	uc003umo.2	+	24	2343	c.2215T>C	c.(2215-2217)TTG>CTG	p.L739L	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Silent_p.L709L|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Silent_p.L459L	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	739											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			TAGGGTATTCTTGGCTGAACA	0.408													13	74					0	0	0.000566183	0	0
CALCR	799	broad.mit.edu	37	7	93065372	93065372	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:93065372G>A	uc003umv.1	-	13	1404	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	CALCR_uc011kia.1_Silent_p.I161I|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.I347I|CALCR_uc003umw.2_Silent_p.I347I	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	363	Helical; Name=6; (Potential).			I -> T (in Ref. 3; AAC50301).	activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	GGGGCACAAGGATCATGGTGG	0.493													5	38					0	0	0.000602214	0	0
CALCR	799	broad.mit.edu	37	7	93072988	93072988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:93072988G>A	uc003umv.1	-	10	1093	c.832C>T	c.(832-834)CTT>TTT	p.L278F	CALCR_uc011kia.1_Missense_Mutation_p.L58F|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.L244F|CALCR_uc003umw.2_Missense_Mutation_p.L244F	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	260	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	AGTGTATGAAGATAGATCCCT	0.438													38	19					0	0	0.00361006	0	0
PEG10	23089	broad.mit.edu	37	7	94293378	94293378	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:94293378G>A	uc011kie.1	+	2	955	c.738G>A	c.(736-738)AAG>AAA	p.K246K		NM_001040152	NP_001035242	Q86TG7	PEG10_HUMAN	paternally expressed 10 isoform RF1	170	Necessary for interaction with ALK1.				apoptosis|cell differentiation|negative regulation of transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			CCAAACGCAAGATCAGACGCC	0.537													19	151					0	0	0.00188189	0	0
ASB4	51666	broad.mit.edu	37	7	95157196	95157196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:95157196C>T	uc011kij.1	+	3	559	c.559C>T	c.(559-561)CTT>TTT	p.L187F	ASB4_uc003unx.2_Missense_Mutation_p.L187F	NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	187	ANK 4.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			CCACTTCGGCCTTTCGGAGCT	0.572											OREG0018172	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	59					0	0	0.00307968	0	0
TAC1	6863	broad.mit.edu	37	7	97361934	97361934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:97361934C>T	uc003uop.3	+	2	256	c.10C>T	c.(10-12)CTC>TTC	p.L4F	TAC1_uc003uoq.3_Missense_Mutation_p.L4F|TAC1_uc003uor.3_Missense_Mutation_p.L4F|TAC1_uc003uos.3_Missense_Mutation_p.L4F	NM_003182	NP_003173	P20366	TKN1_HUMAN	tachykinin 1 isoform beta precursor	4					detection of abiotic stimulus|elevation of cytosolic calcium ion concentration|insemination|neuropeptide signaling pathway|synaptic transmission|tachykinin receptor signaling pathway	extracellular space					0	all_cancers(62;3.95e-09)|all_epithelial(64;1.1e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0358)|all_lung(186;0.0384)				Bacitracin(DB00626)	CATGAAAATCCTCGTGGCCTT	0.438													21	187					0	0	0.00188189	0	0
ASNS	440	broad.mit.edu	37	7	97498267	97498267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:97498267G>A	uc003uot.3	-	3	708	c.202C>T	c.(202-204)CCG>TCG	p.P68S	ASNS_uc011kin.1_Intron|ASNS_uc003uou.3_Missense_Mutation_p.P68S|ASNS_uc003uov.3_Missense_Mutation_p.P68S|ASNS_uc011kio.1_Missense_Mutation_p.P47S|ASNS_uc003uow.3_Missense_Mutation_p.P47S|ASNS_uc003uox.3_Intron	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	68	Glutamine amidotransferase type-2.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CACAAATACGGATATTTCTTC	0.433													8	96					0	0	0.000673444	0	0
LMTK2	22853	broad.mit.edu	37	7	97821025	97821025	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:97821025G>A	uc003upd.1	+	11	1541	c.1248G>A	c.(1246-1248)CGG>CGA	p.R416R		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	416					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					AGAGCCAGCGGGACTCAGAGG	0.537													7	41					0	0	0.00307968	0	0
TECPR1	25851	broad.mit.edu	37	7	97863002	97863002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:97863002C>T	uc003upg.2	-	11	1608	c.1403G>A	c.(1402-1404)AGG>AAG	p.R468K	TECPR1_uc003uph.1_Missense_Mutation_p.R398K	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	468						integral to membrane	protein binding			pancreas(1)	1						TCTGGCCTCCCTGCTGCCCTC	0.662													7	50					0	0	0.000673444	0	0
TMEM130	222865	broad.mit.edu	37	7	98452871	98452871	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:98452871G>A	uc003upo.2	-	5	984	c.795C>T	c.(793-795)TTC>TTT	p.F265F	TMEM130_uc011kiq.1_Silent_p.F246F|TMEM130_uc011kir.1_Silent_p.F265F|TMEM130_uc003upn.2_Silent_p.F163F	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	265	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCTCCCCAGGAAGTTCAAGG	0.572													8	70					0	0	0.000673444	0	0
TRRAP	8295	broad.mit.edu	37	7	98547192	98547192	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:98547192C>T	uc003upp.2	+	35	5129	c.4920C>T	c.(4918-4920)TTC>TTT	p.F1640F	TRRAP_uc011kis.1_Silent_p.F1622F|TRRAP_uc003upr.2_Silent_p.F1339F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1640					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCTCCAGTTCCAGGCCATCA	0.607													20	9					0	0	0.00121646	0	0
TRRAP	8295	broad.mit.edu	37	7	98591302	98591302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:98591302C>T	uc003upp.2	+	65	10156	c.9947C>T	c.(9946-9948)TCT>TTT	p.S3316F	TRRAP_uc011kis.1_Missense_Mutation_p.S3287F|TRRAP_uc003upr.2_Missense_Mutation_p.S3022F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3316					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCCTTCTGTCTTCCCTGGAA	0.537													11	50					0	0	0.000978159	0	0
ZNF655	79027	broad.mit.edu	37	7	99169928	99169928	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:99169928T>G	uc003urh.2	+	3	590	c.197T>G	c.(196-198)GTG>GGG	p.V66G	ZNF655_uc010lga.2_Missense_Mutation_p.V101G|ZNF655_uc010lgc.2_Missense_Mutation_p.V101G|ZNF655_uc003urj.2_Missense_Mutation_p.V66G|ZNF655_uc003urk.2_5'UTR|ZNF655_uc010lgd.2_5'UTR	NM_138494	NP_612503	Q8N720	ZN655_HUMAN	zinc finger protein 655 isoform a	66					G1 phase|regulation of mitotic cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_epithelial(64;3.19e-09)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					TCGGAAGAAGTGCATTCATAC	0.363													12	65					0	0	0.00244969	0	0
CYP3A7	1551	broad.mit.edu	37	7	99317987	99317987	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:99317987C>T	uc003uru.2	-	4	372	c.267G>A	c.(265-267)ATG>ATA	p.M89I	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	89					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					CTGTTTTGATCATGTCGGGAT	0.363													7	87					0	0	0.00198382	0	0
CYP3A7	1551	broad.mit.edu	37	7	99328737	99328737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:99328737C>T	uc003uru.2	-	2	215	c.110G>A	c.(109-111)GGA>GAA	p.G37E	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	37					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					CCCTGGAATTCCAAGCTTCTT	0.423													12	50					0	0	0.00136819	0	0
ZSCAN21	7589	broad.mit.edu	37	7	99654713	99654713	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:99654713C>T	uc003uso.2	+	2	228	c.84C>T	c.(82-84)GTC>GTT	p.V28V	ZSCAN21_uc011kje.1_Silent_p.V27V|ZSCAN21_uc003usn.1_Silent_p.V27V	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	28					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TGGTAAAAGTCGAGGAGAAAG	0.557													98	59					0	0	0.00361006	0	0
ZSCAN21	7589	broad.mit.edu	37	7	99654869	99654869	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:99654869C>T	uc003uso.2	+	2	384	c.240C>T	c.(238-240)ACC>ACT	p.T80T	ZSCAN21_uc011kje.1_Silent_p.T79T|ZSCAN21_uc003usn.1_Silent_p.T79T	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	80	SCAN box.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			AGATCCACACCAAGGAGCAGA	0.637													18	10					0	0	0.00074312	0	0
STAG3	10734	broad.mit.edu	37	7	99780373	99780374	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:99780373_99780374CG>AT	uc003utx.1	+	4	402_403	c.247_248CG>AT	c.(247-249)CGA>ATA	p.R83I	STAG3_uc010lgs.1_5'UTR|STAG3_uc011kjk.1_Missense_Mutation_p.R83I	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	83					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAAAGGGTCCCGAGTGGTACAT	0.406													11	384					0	0	6.4e-05	0	0
PILRB	29990	broad.mit.edu	37	7	99955936	99955936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:99955936C>T	uc003uuk.2	+	15	2507	c.11C>T	c.(10-12)CCC>CTC	p.P4L	PILRB_uc003uul.2_Missense_Mutation_p.P4L|PILRB_uc003uum.1_RNA|PILRB_uc003uun.2_Missense_Mutation_p.P4L	NM_013440	NP_038468	Q9UKJ0	PILRB_HUMAN	paired immunoglobulin-like type 2 receptor beta	4					activation of transmembrane receptor protein tyrosine kinase activity	integral to plasma membrane	protein binding|receptor activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATGGGTCGGCCCCTGCTGCTG	0.667													12	102					0	0	0.000422831	0	0
PILRA	29992	broad.mit.edu	37	7	99971761	99971761	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:99971761C>T	uc003uuo.1	+	2	371	c.159C>T	c.(157-159)TTC>TTT	p.F53F	PILRA_uc011kjn.1_Silent_p.F53F|PILRA_uc011kjo.1_Silent_p.F53F|PILRA_uc003uup.1_Silent_p.F53F|PILRA_uc003uuq.1_Silent_p.F53F	NM_013439	NP_038467	Q9UKJ1	PILRA_HUMAN	paired immunoglobulin-like type 2 receptor alpha	53	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms	extracellular region|integral to membrane|plasma membrane	protein binding|receptor activity			skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AAATCCCCTTCTCCTTCTATT	0.562													5	44					0	0	0.000602214	0	0
LRCH4	4034	broad.mit.edu	37	7	100175158	100175158	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100175158G>A	uc003uvj.2	-	10	1193	c.1140C>T	c.(1138-1140)AGC>AGT	p.S380S	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	380					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTGCCCCAGGGCTTAATTCGG	0.672													5	54					0	0	0.00198382	0	0
PCOLCE	5118	broad.mit.edu	37	7	100200102	100200102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100200102C>T	uc003uvo.2	+	1	221	c.23C>T	c.(22-24)TCC>TTC	p.S8F	uc011kjy.1_RNA|PCOLCE_uc011kkb.1_Missense_Mutation_p.S8F|PCOLCE_uc010lhb.1_RNA	NM_002593	NP_002584	Q15113	PCOC1_HUMAN	procollagen C-endopeptidase enhancer	8					multicellular organismal development	extracellular space	collagen binding|heparin binding|peptidase activator activity				0	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GCCACAGCCTCCCTCCTGGGG	0.567													12	59					0	0	0.00136819	0	0
ZAN	7455	broad.mit.edu	37	7	100349969	100349969	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100349969C>T	uc003uwj.2	+	14	2406	c.2241C>T	c.(2239-2241)ATC>ATT	p.I747I	ZAN_uc003uwk.2_Silent_p.I747I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	747	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACCCACCATCCCCACAGAAA	0.517													25	13					0	0	0.00127121	0	0
SLC12A9	56996	broad.mit.edu	37	7	100456718	100456718	+	Silent	SNP	C	T	T	rs148415163		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100456718C>T	uc003uwp.2	+	7	1054	c.912C>T	c.(910-912)GTC>GTT	p.V304V	SLC12A9_uc003uwq.2_Silent_p.V215V|SLC12A9_uc011kki.1_5'UTR|SLC12A9_uc003uwr.2_Silent_p.V40V|SLC12A9_uc003uws.2_Intron|SLC12A9_uc003uwt.2_Silent_p.V40V|SLC12A9_uc003uwv.2_5'UTR	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	304	Helical; (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GCACGATCGTCGCCGTCGCCT	0.622													17	156					0	0	0.000878237	0	0
SRRT	51593	broad.mit.edu	37	7	100482420	100482420	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100482420G>A	uc003uwy.2	+	9	1270	c.1002G>A	c.(1000-1002)AAG>AAA	p.K334K	SRRT_uc010lhl.1_Silent_p.K334K|SRRT_uc003uxa.2_Silent_p.K334K|SRRT_uc003uwz.2_Silent_p.K334K	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	334	Glu-rich.				cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						ATGGGGACAAGGAAGAGAAGA	0.512													8	71					0	0	0.000274275	0	0
MUC17	140453	broad.mit.edu	37	7	100678765	100678765	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100678765C>T	uc003uxp.1	+	3	4121	c.4068C>T	c.(4066-4068)ATC>ATT	p.I1356I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1356	Extracellular (Potential).|20.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAATCAGCATCCTTTCAACAA	0.458													34	215					0	0	0.00375469	0	0
MUC17	140453	broad.mit.edu	37	7	100678878	100678878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100678878G>A	uc003uxp.1	+	3	4234	c.4181G>A	c.(4180-4182)GGA>GAA	p.G1394E	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1394	Extracellular (Potential).|59 X approximate tandem repeats.|21.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTAGTGAAGGAACCACTCCG	0.512													25	204					0	0	0.00178596	0	0
MUC17	140453	broad.mit.edu	37	7	100685956	100685956	+	Silent	SNP	C	T	T	rs141089332		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100685956C>T	uc003uxp.1	+	3	11312	c.11259C>T	c.(11257-11259)ACC>ACT	p.T3753T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3753	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AAATAAGCACCCTTGGGACCA	0.483													24	139					0	0	0.00395357	0	0
MUC17	140453	broad.mit.edu	37	7	100686365	100686365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:100686365C>T	uc003uxp.1	+	3	11721	c.11668C>T	c.(11668-11670)CCT>TCT	p.P3890S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3890	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTAGCTTTCCTGGGGCCAG	0.478													18	102					0	0	0.000958276	0	0
EMID2	136227	broad.mit.edu	37	7	101192500	101192500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:101192500C>T	uc010lhy.1	+	9	1175	c.983C>T	c.(982-984)TCC>TTC	p.S328F	EMID2_uc003uyo.1_Missense_Mutation_p.S330F	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	330	Collagen-like 2.					collagen				ovary(1)	1	Lung NSC(181;0.215)					ACACCTGGATCCCAGGTAAGG	0.642													5	47					0	0	0.00198382	0	0
CUX1	1523	broad.mit.edu	37	7	101840329	101840329	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:101840329C>T	uc003uyx.3	+	15	1676	c.1638C>T	c.(1636-1638)TCC>TCT	p.S546S	CUX1_uc003uys.3_Silent_p.S557S|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	546	CUT 1.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GGAGCGTCTCCGAGGGCGAGG	0.517													13	90					0	0	0.00185496	0	0
CUX1	1523	broad.mit.edu	37	7	101923374	101923374	+	Missense_Mutation	SNP	G	A	A	rs139293638		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:101923374G>A	uc003uyt.2	+	19	1745	c.1726G>A	c.(1726-1728)GAG>AAG	p.E576K	CUX1_uc011kkn.1_Missense_Mutation_p.E537K|CUX1_uc003uyw.2_Missense_Mutation_p.E530K|CUX1_uc003uyv.2_Missense_Mutation_p.E560K|CUX1_uc003uyu.2_Missense_Mutation_p.E574K|CUX1_uc003uyz.2_RNA	NM_001913	NP_001904	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform b	165	Potential.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GTCCCAGTACGAGGAGCGCCT	0.672													7	45					0	0	0.000442599	0	0
LRWD1	222229	broad.mit.edu	37	7	102106288	102106288	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:102106288C>T	uc003uzn.2	+	2	243	c.105C>T	c.(103-105)TCC>TCT	p.S35S	ALKBH4_uc003uzl.2_5'Flank|ALKBH4_uc003uzm.2_5'Flank|LRWD1_uc003uzo.2_5'UTR	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	35	LRR 1.				chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						AGCTGCTTTCCGAGCACCTGG	0.622													7	37					0	0	0.00198382	0	0
SLC26A5	375611	broad.mit.edu	37	7	103029807	103029808	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:103029807_103029808GG>TA	uc003vbz.2	-	13	1611_1612	c.1375_1376CC>TA	c.(1375-1377)CCC>TAC	p.P459Y	SLC26A5_uc003vbt.1_Missense_Mutation_p.P459Y|SLC26A5_uc003vbu.1_Missense_Mutation_p.P459Y|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Intron|SLC26A5_uc003vby.2_Intron|SLC26A5_uc010liy.2_Intron	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	459	Helical; Name=11; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CCAGAAAAAGGGGAGATCTGAG	0.436													7	117					0	0	6.4e-05	0	0
SLC26A5	375611	broad.mit.edu	37	7	103033422	103033422	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:103033422T>C	uc003vbz.2	-	10	1299	c.1063A>G	c.(1063-1065)ATC>GTC	p.I355V	SLC26A5_uc003vbt.1_Missense_Mutation_p.I355V|SLC26A5_uc003vbu.1_Missense_Mutation_p.I355V|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_Intron|SLC26A5_uc003vbx.2_Missense_Mutation_p.I355V|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	355	Helical; Name=8; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						GCCATGGAGATGGTCACTGAA	0.468													8	89					0	0	0.000274275	0	0
RELN	5649	broad.mit.edu	37	7	103126752	103126752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:103126752C>T	uc003vca.2	-	61	10035	c.9875G>A	c.(9874-9876)GGA>GAA	p.G3292E	RELN_uc010liz.2_Missense_Mutation_p.G3292E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3292					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACAGCCACTTCCTATGACTCC	0.502													18	88					0	0	0.00188189	0	0
RELN	5649	broad.mit.edu	37	7	103236980	103236980	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:103236980G>A	uc003vca.2	-	25	3622	c.3462C>T	c.(3460-3462)CTC>CTT	p.L1154L	RELN_uc010liz.2_Silent_p.L1154L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1154					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TGTACTGAAGGAGGACGCCCT	0.522													15	110					0	0	0.00121646	0	0
MLL5	55904	broad.mit.edu	37	7	104715193	104715193	+	Silent	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:104715193T>C	uc003vcm.2	+	8	1194	c.660T>C	c.(658-660)GTT>GTC	p.V220V	MLL5_uc010lja.1_Silent_p.V74V|MLL5_uc010ljb.1_Silent_p.V220V|MLL5_uc003vcl.2_Silent_p.V220V|MLL5_uc010ljc.2_Silent_p.V220V|MLL5_uc003vco.1_RNA|MLL5_uc010ljd.1_5'Flank	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	220					cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						CTTCAAGAGTTTCCAAAGTTA	0.363													20	112					0	0	0.00152264	0	0
MLL5	55904	broad.mit.edu	37	7	104753447	104753447	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:104753447A>G	uc003vcm.2	+	27	5778	c.5244A>G	c.(5242-5244)CCA>CCG	p.P1748P	MLL5_uc010ljc.2_Silent_p.P1748P|MLL5_uc010ljf.1_Intron|MLL5_uc010ljg.2_Silent_p.P482P	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	1748	Pro-rich.				cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						AAGGACCTCCACTTTTTCCTT	0.562													11	87					0	0	0.00316338	0	0
PUS7	54517	broad.mit.edu	37	7	105121519	105121519	+	Silent	SNP	G	A	A	rs137934853	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:105121519G>A	uc003vcx.2	-	9	1374	c.1155C>T	c.(1153-1155)GTC>GTT	p.V385V	PUS7_uc010lji.2_Silent_p.V391V|PUS7_uc003vcy.2_Silent_p.V385V|PUS7_uc003vcz.1_Silent_p.V385V	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	385	TRUD.				pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						GATACGTAGGGACAGCTGTGG	0.363													16	85					0	0	0.000566183	0	0
RINT1	60561	broad.mit.edu	37	7	105187477	105187477	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:105187477C>T	uc003vda.1	+	5	867	c.636C>T	c.(634-636)TTC>TTT	p.F212F	RINT1_uc010ljj.1_Intron	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	212					cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						TTCTTGGTTTCATGAGAGCCA	0.403													17	128					0	0	0.000566183	0	0
NAMPT	10135	broad.mit.edu	37	7	105913022	105913022	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:105913022A>G	uc003vdq.2	-	4	709	c.401T>C	c.(400-402)GTG>GCG	p.V134A	NAMPT_uc003vdr.1_Missense_Mutation_p.V134A|NAMPT_uc011klu.1_Missense_Mutation_p.V47A	NM_005746	NP_005737	P43490	NAMPT_HUMAN	nicotinamide phosphoribosyltransferase	134					cell-cell signaling|NAD biosynthetic process|nicotinamide metabolic process|positive regulation of cell proliferation|positive regulation of nitric-oxide synthase biosynthetic process|signal transduction|water-soluble vitamin metabolic process	cytosol	cytokine activity|nicotinamide phosphoribosyltransferase activity|nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			large_intestine(1)	1						TGTGTTTTCCACCGTGAAGAG	0.343													6	86					0	0	0.00116845	0	0
HBP1	26959	broad.mit.edu	37	7	106829856	106829856	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:106829856G>C	uc003vdy.2	+	7	1071	c.885G>C	c.(883-885)GAG>GAC	p.E295D	HBP1_uc011klv.1_Missense_Mutation_p.E305D|HBP1_uc003vdz.2_Missense_Mutation_p.E295D|HBP1_uc003vea.2_Missense_Mutation_p.E295D|HBP1_uc003veb.1_Missense_Mutation_p.E295D	NM_012257	NP_036389	O60381	HBP1_HUMAN	HMG-box transcription factor 1	295	AXH.				cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			skin(1)	1						TTACCGTAGAGTGTAAGCTGG	0.338													10	72					0	0	0.00136819	0	0
LAMB1	3912	broad.mit.edu	37	7	107599799	107599799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:107599799G>A	uc003vew.2	-	20	2920	c.2585C>T	c.(2584-2586)CCA>CTA	p.P862L	LAMB1_uc003vev.2_Missense_Mutation_p.P886L	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	862	Laminin EGF-like 7.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGGCAACTTGGAAAGCCCCA	0.582													7	81					0	0	0.000274275	0	0
LAMB4	22798	broad.mit.edu	37	7	107717394	107717394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:107717394C>T	uc010ljo.1	-	17	2203	c.2119G>A	c.(2119-2121)GAC>AAC	p.D707N	LAMB4_uc003vey.2_Missense_Mutation_p.D707N	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	707	Laminin IV type B.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CTTACAGAGTCCACCAGGACA	0.388													12	144					0	0	0.00136819	0	0
LAMB4	22798	broad.mit.edu	37	7	107746428	107746428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:107746428G>A	uc010ljo.1	-	8	788	c.704C>T	c.(703-705)ACC>ATC	p.T235I	LAMB4_uc003vey.2_Missense_Mutation_p.T235I	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	235	Laminin N-terminal.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						ATCCCCAAGGGTGTGGAGCTT	0.403													9	61					0	0	0.000673444	0	0
NRCAM	4897	broad.mit.edu	37	7	107790410	107790410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:107790410C>T	uc003vfb.2	-	33	4331	c.3860G>A	c.(3859-3861)GGA>GAA	p.G1287E	NRCAM_uc003vfc.2_Missense_Mutation_p.G1166E|NRCAM_uc011kmk.1_Missense_Mutation_p.G1189E|NRCAM_uc003vfd.2_Missense_Mutation_p.G1170E|NRCAM_uc003vfe.2_Missense_Mutation_p.G1158E|NRCAM_uc003vez.2_Missense_Mutation_p.G70E|NRCAM_uc003vfa.2_Missense_Mutation_p.G131E|NRCAM_uc011kmj.1_Missense_Mutation_p.G133E	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	1287	Cytoplasmic (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						GCTTTCGTTTCCTTCAGCCGG	0.418													30	85					0	0	0.00209593	0	0
NRCAM	4897	broad.mit.edu	37	7	107818488	107818488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:107818488G>A	uc003vfb.2	-	26	3392	c.2921C>T	c.(2920-2922)CCA>CTA	p.P974L	NRCAM_uc003vfc.2_Missense_Mutation_p.P958L|NRCAM_uc011kmk.1_Missense_Mutation_p.P969L|NRCAM_uc003vfd.2_Missense_Mutation_p.P950L|NRCAM_uc003vfe.2_Missense_Mutation_p.P950L|NRCAM_uc011kmj.1_5'Flank	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	974	Fibronectin type-III 4.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						GTGGCTCGGTGGATCCCATTC	0.438													8	45					0	0	0.00307968	0	0
NRCAM	4897	broad.mit.edu	37	7	107872892	107872892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:107872892C>T	uc003vfb.2	-	7	776	c.305G>A	c.(304-306)GGA>GAA	p.G102E	NRCAM_uc003vfc.2_Missense_Mutation_p.G96E|NRCAM_uc011kmk.1_Missense_Mutation_p.G97E|NRCAM_uc003vfd.2_Missense_Mutation_p.G97E|NRCAM_uc003vfe.2_Missense_Mutation_p.G97E	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	102	Ig-like 1.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						TATGAGCGTTCCTGTGCCAGG	0.478													12	62					0	0	0.00185496	0	0
LRRN3	54674	broad.mit.edu	37	7	110763663	110763663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:110763663G>A	uc003vft.3	+	4	1881	c.835G>A	c.(835-837)GAT>AAT	p.D279N	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Missense_Mutation_p.D279N|LRRN3_uc003vfs.3_Missense_Mutation_p.D279N	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	279	Extracellular (Potential).|LRR 9.					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		ACGAAGGGGTGATTTTAGCAA	0.338													9	57					0	0	0.000274275	0	0
FOXP2	93986	broad.mit.edu	37	7	114282672	114282672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:114282672G>A	uc003vhb.2	+	7	1357	c.983G>A	c.(982-984)CGA>CAA	p.R328Q	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Missense_Mutation_p.R353Q|FOXP2_uc003vha.2_Missense_Mutation_p.R236Q|FOXP2_uc011kmu.1_Missense_Mutation_p.R345Q|FOXP2_uc011kmv.1_Missense_Mutation_p.R327Q|FOXP2_uc010ljz.1_Missense_Mutation_p.R236Q|FOXP2_uc003vgx.2_Missense_Mutation_p.R328Q|FOXP2_uc003vhd.2_Missense_Mutation_p.R328Q|FOXP2_uc003vhc.2_Missense_Mutation_p.R353Q	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	328					camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						AGTGCAAGACGAGACAGGTAA	0.363													10	72					0	0	0.000442599	0	0
FOXP2	93986	broad.mit.edu	37	7	114299459	114299459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:114299459C>T	uc003vhb.2	+	12	1891	c.1517C>T	c.(1516-1518)CCA>CTA	p.P506L	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Missense_Mutation_p.P531L|FOXP2_uc003vha.2_Missense_Mutation_p.P414L|FOXP2_uc011kmu.1_Missense_Mutation_p.P523L|FOXP2_uc011kmv.1_Missense_Mutation_p.P505L|FOXP2_uc010ljz.1_Intron|FOXP2_uc003vhe.1_Missense_Mutation_p.P76L	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	506	Fork-head.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						GTCAGACCTCCATTTACTTAT	0.284													13	128					0	0	0.00244969	0	0
MET	4233	broad.mit.edu	37	7	116380042	116380042	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:116380042G>A	uc003vij.2	+	4	1618	c.1431G>A	c.(1429-1431)GTG>GTA	p.V477V	MET_uc010lkh.2_Silent_p.V477V|MET_uc011knc.1_Silent_p.V477V|MET_uc011knd.1_Silent_p.V477V|MET_uc011kne.1_Silent_p.V477V|MET_uc011knf.1_Silent_p.V477V|MET_uc011kng.1_Silent_p.V477V|MET_uc011knh.1_Silent_p.V477V|MET_uc011kni.1_Silent_p.V477V|MET_uc011knj.1_Silent_p.V47V|MET_uc011kna.1_Silent_p.V477V|MET_uc011knb.1_Silent_p.V477V	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	477	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CCCCTCATGTGAATTTTCTCC	0.403			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				27	122					0	0	0.00106085	0	0
WNT2	7472	broad.mit.edu	37	7	116955182	116955182	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:116955182C>T	uc003viz.2	-	3	831	c.531G>A	c.(529-531)AGG>AGA	p.R177R	WNT2_uc003vja.2_Silent_p.R81R	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	177					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		cctttcctttcctttcctttG	0.443													16	82					0	0	0.00316338	0	0
CFTR	1080	broad.mit.edu	37	7	117175409	117175409	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:117175409C>T	uc003vjd.2	+	6	819	c.687C>T	c.(685-687)TTC>TTT	p.F229F	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	229	Helical; Name=4; (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GACTTGGTTTCCTGATAGTCC	0.448									Cystic_Fibrosis				15	77					0	0	0.000566183	0	0
CFTR	1080	broad.mit.edu	37	7	117175426	117175426	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:117175426T>G	uc003vjd.2	+	6	836	c.704T>G	c.(703-705)CTT>CGT	p.L235R	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	235	Helical; Name=4; (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GTCCTTGCCCTTTTTCAGGCT	0.438									Cystic_Fibrosis				8	75					0	0	0.000274275	0	0
CFTR	1080	broad.mit.edu	37	7	117175444	117175444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:117175444G>A	uc003vjd.2	+	6	854	c.722G>A	c.(721-723)GGG>GAG	p.G241E	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	241	Helical; Name=4; (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GCTGGGCTAGGGAGAATGATG	0.433									Cystic_Fibrosis				10	66					0	0	0.00136819	0	0
KCND2	3751	broad.mit.edu	37	7	120373106	120373106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:120373106G>A	uc003vjj.1	+	2	2230	c.1265G>A	c.(1264-1266)CGA>CAA	p.R422Q		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	422	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GCAGACAAACGAAGGGCACAA	0.438													6	24					0	0	0.00198382	0	0
TSPAN12	23554	broad.mit.edu	37	7	120446636	120446636	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:120446636G>A	uc003vjk.2	-	7	953	c.579C>T	c.(577-579)GCC>GCT	p.A193A	TSPAN12_uc010lkj.2_Silent_p.A66A	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	193	Extracellular (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					CTTCCTGGTGGGCCTGTTTGG	0.408													12	43					0	0	0.00244969	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121651176	121651176	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:121651176C>T	uc003vjy.2	+	12	2471	c.2076C>T	c.(2074-2076)TCC>TCT	p.S692S	PTPRZ1_uc003vjz.2_Silent_p.S692S|PTPRZ1_uc011knt.1_Silent_p.S142S	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	692	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CAACCAAGTCCTTTTCTGCAG	0.468													4	34					0	0	0.000602214	0	0
AASS	10157	broad.mit.edu	37	7	121719731	121719731	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:121719731G>A	uc003vka.2	-	20	2412	c.2316C>T	c.(2314-2316)CCC>CCT	p.P772P	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Silent_p.P772P|AASS_uc011knw.1_Silent_p.P260P	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	772	Saccharopine dehydrogenase.				protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	GCTCAGAGGAGGGTGAAATCC	0.403													12	48					0	0	0.00136819	0	0
FEZF1	389549	broad.mit.edu	37	7	121942985	121942985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:121942985C>T	uc003vkd.2	-	3	1011	c.937G>A	c.(937-939)GAA>AAA	p.E313K	FEZF1_uc003vkc.2_Missense_Mutation_p.E263K|uc010lko.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	313					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						TGAGGTTTTTCCTAAGCAGGA	0.383													25	146					0	0	0.001512	0	0
CADPS2	93664	broad.mit.edu	37	7	122114438	122114438	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:122114438G>A	uc010lkp.2	-	12	2158	c.1995C>T	c.(1993-1995)TGC>TGT	p.C665C	CADPS2_uc011knx.1_Silent_p.C36C|CADPS2_uc003vkg.3_Silent_p.C362C|CADPS2_uc010lkq.2_Silent_p.C662C	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	665					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						TACTCACCAAGCAAGAATAGG	0.363													16	99					0	0	0.000566183	0	0
RNF133	168433	broad.mit.edu	37	7	122338481	122338481	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:122338481G>A	uc003vkj.1	-	1	728	c.492C>T	c.(490-492)TTC>TTT	p.F164F	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	164	PA.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						TAATTAAATGGAAAATTTCCG	0.423													8	79					0	0	0.000442599	0	0
RNF148	378925	broad.mit.edu	37	7	122342384	122342384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:122342384G>A	uc003vkk.1	-	1	638	c.421C>T	c.(421-423)CCC>TCC	p.P141S	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron|RNF148_uc010lkr.1_Intron	NM_198085	NP_932351	Q8N7C7	RN148_HUMAN	ring finger protein 148 precursor	141	PA.					integral to membrane	zinc ion binding				0						TGAGACATGGGAAATACTTTA	0.448													17	129					0	0	0.000422831	0	0
TAS2R16	50833	broad.mit.edu	37	7	122634905	122634905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:122634905C>T	uc003vkl.1	-	1	850	c.784G>A	c.(784-786)GAA>AAA	p.E262K		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	262	Helical; Name=7; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding	p.E262E(1)		ovary(1)|skin(1)	2						ACAAAAGCTTCCCAGACCCAT	0.403													16	77					0	0	0.00188189	0	0
SLC13A1	6561	broad.mit.edu	37	7	122759254	122759254	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:122759254G>A	uc003vkm.2	-	13	1418	c.1393C>T	c.(1393-1395)CTG>TTG	p.L465L	SLC13A1_uc010lks.2_Silent_p.L341L	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	465	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	AATGAACCCAGAGGAGATAAT	0.343													9	74					0	0	0.00136819	0	0
ASB15	142685	broad.mit.edu	37	7	123270144	123270144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:123270144G>A	uc003vku.1	+	11	1857	c.1565G>A	c.(1564-1566)AGA>AAA	p.R522K	ASB15_uc003vkw.1_Missense_Mutation_p.R522K	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	522					intracellular signal transduction					skin(2)|lung(1)	3						GAAGTACAGAGAGAATGGCCA	0.368													17	99					0	0	0.00074312	0	0
LMOD2	442721	broad.mit.edu	37	7	123302477	123302477	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:123302477C>T	uc003vky.2	+	2	994	c.837C>T	c.(835-837)TTC>TTT	p.F279F		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	279						cytoskeleton	actin binding|tropomyosin binding				0						AGTCCAACTTCATAACGGGAA	0.552													7	58					0	0	0.000673444	0	0
HYAL4	23553	broad.mit.edu	37	7	123509188	123509188	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:123509188G>A	uc003vlc.2	+	3	1499	c.861G>A	c.(859-861)AGG>AGA	p.R287R	HYAL4_uc011knz.1_Silent_p.R287R	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	287	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						AATCCATGAGGATCTCCACCA	0.423													8	61					0	0	0.00307968	0	0
SPAM1	6677	broad.mit.edu	37	7	123593922	123593922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:123593922C>T	uc003vld.2	+	4	700	c.298C>T	c.(298-300)CCT>TCT	p.P100S	SPAM1_uc003vle.2_Missense_Mutation_p.P100S|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.P100S|SPAM1_uc010lku.2_Missense_Mutation_p.P100S	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	100					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TGGCTACTATCCTTACATAGA	0.418													6	15					0	0	0.00116845	0	0
SPAM1	6677	broad.mit.edu	37	7	123599723	123599723	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:123599723G>A	uc003vld.2	+	6	1632	c.1230G>A	c.(1228-1230)GAG>GAA	p.E410E	SPAM1_uc003vle.2_Silent_p.E410E|SPAM1_uc011koa.1_Silent_p.E66E|SPAM1_uc003vlf.3_Silent_p.E410E|SPAM1_uc010lku.2_Silent_p.E410E	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	410					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TTCAACTTGAGAAAGGTGGAA	0.403													6	19					0	0	0.00307968	0	0
GRM8	2918	broad.mit.edu	37	7	126173432	126173432	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:126173432G>A	uc003vlr.2	-	8	2315	c.2004C>T	c.(2002-2004)ACC>ACT	p.T668T	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.T668T|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	668	Helical; Name=3; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GGTTTGTTTTGGTCAGAAGGG	0.478										HNSCC(24;0.065)			6	89					0	0	0.00307968	0	0
METTL2B	55798	broad.mit.edu	37	7	128119262	128119262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:128119262C>T	uc003vnf.2	+	3	290	c.253C>T	c.(253-255)CAC>TAC	p.H85Y	METTL2B_uc003vng.2_Missense_Mutation_p.H20Y|METTL2B_uc011kop.1_5'UTR	NM_018396	NP_060866	Q6P1Q9	MTL2B_HUMAN	methyltransferase like 2B	85							methyltransferase activity			skin(1)	1						CTACAAAATCCACGAAAATGG	0.338													12	95					0	0	0.000422831	0	0
FLNC	2318	broad.mit.edu	37	7	128483878	128483878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:128483878G>A	uc003vnz.3	+	19	3049	c.2840G>A	c.(2839-2841)GGC>GAC	p.G947D	FLNC_uc003voa.3_Missense_Mutation_p.G947D	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	947	Filamin 7.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GTGACTTATGGCGGGGACCCT	0.532													7	85					0	0	0.00307968	0	0
TNPO3	23534	broad.mit.edu	37	7	128614962	128614962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:128614962G>A	uc003vol.1	-	18	2607	c.2233C>T	c.(2233-2235)CAC>TAC	p.H745Y	TNPO3_uc010llx.1_Missense_Mutation_p.H156Y|TNPO3_uc003vom.1_Missense_Mutation_p.H679Y|TNPO3_uc010lly.1_Missense_Mutation_p.H779Y|TNPO3_uc010llz.1_Missense_Mutation_p.H681Y	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	745					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						GTGTCAGGGTGATTCTGGAGA	0.443													8	88					0	0	0.000274275	0	0
FAM40B	57464	broad.mit.edu	37	7	129079882	129079882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:129079882C>T	uc011koy.1	+	2	189	c.149C>T	c.(148-150)ACT>ATT	p.T50I	FAM40B_uc003vow.2_Missense_Mutation_p.T50I	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	50											0						GACTGTCCCACTCTGGAGTTT	0.483													9	73					0	0	0.00136819	0	0
PLXNA4	91584	broad.mit.edu	37	7	131859575	131859576	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:131859575_131859576GG>TA	uc003vra.3	-	21	4207_4208	c.3978_3979CC>TA	c.(3976-3981)TTCCCA>TTTACA	p.P1327T		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1327	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCAATTCCTGGGAACAGCACCC	0.47													17	93					0	0	6.4e-05	0	0
PLXNA4	91584	broad.mit.edu	37	7	131859612	131859612	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:131859612G>A	uc003vra.3	-	21	4171	c.3942C>T	c.(3940-3942)TTC>TTT	p.F1314F		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1314	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TATAGTCCAGGAACGGAATCC	0.577													10	89					0	0	0.000978159	0	0
PLXNA4	91584	broad.mit.edu	37	7	131866180	131866180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:131866180C>T	uc003vra.3	-	18	3681	c.3452G>A	c.(3451-3453)GGA>GAA	p.G1151E		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1151	IPT/TIG 4.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CTCCAGGATTCCTGAGGGACC	0.577													7	112					0	0	0.000442599	0	0
EXOC4	60412	broad.mit.edu	37	7	132973809	132973809	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:132973809T>C	uc003vrk.2	+	3	445	c.410T>C	c.(409-411)GTG>GCG	p.V137A	EXOC4_uc011kpo.1_Missense_Mutation_p.V36A|EXOC4_uc003vri.2_Missense_Mutation_p.V137A|EXOC4_uc003vrj.2_Missense_Mutation_p.V137A	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	137					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				ATCAAGCAAGTGCCTCAAAAG	0.453													10	51					0	0	0.000442599	0	0
AKR1B10	57016	broad.mit.edu	37	7	134222966	134222966	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:134222966C>T	uc003vrr.2	+	8	1082	c.762C>T	c.(760-762)ATC>ATT	p.I254I		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	254					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						GTTTCCATATCCAGAGGAATG	0.483													16	137					0	0	0.00152264	0	0
STRA8	346673	broad.mit.edu	37	7	134925451	134925451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:134925451G>A	uc011kpx.1	+	2	241	c.241G>A	c.(241-243)GAT>AAT	p.D81N		NM_182489	NP_872295	Q7Z7C7	STRA8_HUMAN	STRA8	81					DNA replication|regulation of transcription, DNA-dependent	cytoplasm|nucleus					0						CTCTCAGTCTGATCTCATAGC	0.602													11	73					0	0	0.00136819	0	0
NUP205	23165	broad.mit.edu	37	7	135300744	135300744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:135300744C>T	uc003vsw.2	+	24	3422	c.3391C>T	c.(3391-3393)CGT>TGT	p.R1131C		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1131					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						CTCTCTGAATCGTCAGCGGTC	0.403													74	31					0	0	0.00361006	0	0
AKR1D1	6718	broad.mit.edu	37	7	137801365	137801365	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:137801365G>A	uc003vtz.2	+	9	1008	c.939_splice	c.e9-1	p.M313_splice	AKR1D1_uc011kqe.1_Splice_Site_p.V286_splice|AKR1D1_uc011kqf.1_Splice_Site_p.M272_splice|AKR1D1_uc010lmy.1_Splice_Site	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1						androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TGTTTTGGCAGGTGGCGCGAT	0.448													19	140					0	0	0.00395357	0	0
TRIM24	8805	broad.mit.edu	37	7	138189106	138189106	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:138189106A>C	uc003vuc.2	+	2	651	c.436A>C	c.(436-438)AAG>CAG	p.K146Q	TRIM24_uc003vub.2_Missense_Mutation_p.K146Q	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	146					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						CTTTTTTGTGAAGGACACTAC	0.373													18	138					0	0	0.000566183	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138437493	138437493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:138437493C>T	uc003vuf.2	-	10	1144	c.906G>A	c.(904-906)ATG>ATA	p.M302I	ATP6V0A4_uc003vug.2_Missense_Mutation_p.M302I|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.M302I	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	302	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						AGACAGCTTTCATCTTCTGCA	0.537													8	82					0	0	0.00307968	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138453565	138453565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:138453565C>T	uc003vuf.2	-	4	489	c.251G>A	c.(250-252)AGC>AAC	p.S84N	ATP6V0A4_uc003vug.2_Missense_Mutation_p.S84N|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.S84N	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	84	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GGTCAGTGGGCTTTTCTCGAG	0.493													5	43					0	0	0.00198382	0	0
KIAA1549	57670	broad.mit.edu	37	7	138603927	138603927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:138603927C>T	uc011kql.1	-	2	494	c.445G>A	c.(445-447)GAG>AAG	p.E149K	KIAA1549_uc003vuk.3_Missense_Mutation_p.E99K|KIAA1549_uc011kqj.1_Missense_Mutation_p.E149K	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	149						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						ACGGCCACCTCTTTACTCGTC	0.453			O	BRAF	pilocytic astrocytoma								29	242					0	0	0.00327116	0	0
TTC26	79989	broad.mit.edu	37	7	138827047	138827047	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:138827047A>G	uc003vus.2	+	5	509	c.395A>G	c.(394-396)CAC>CGC	p.H132R	TTC26_uc003vuq.2_Missense_Mutation_p.H132R|TTC26_uc011kqm.1_Missense_Mutation_p.H132R|TTC26_uc003vur.3_Missense_Mutation_p.H132R|TTC26_uc011kqn.1_Missense_Mutation_p.H132R|TTC26_uc011kqo.1_Missense_Mutation_p.H101R|TTC26_uc011kqp.1_Missense_Mutation_p.H27R|TTC26_uc003vut.2_5'UTR|TTC26_uc011kqq.1_Missense_Mutation_p.H132R	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	132							binding			ovary(1)	1						CACTTGGCTCACAAGGTATTT	0.323													25	173					0	0	0.00106085	0	0
BRAF	673	broad.mit.edu	37	7	140481408	140481408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:140481408G>A	uc003vwc.3	-	11	1461	c.1400C>T	c.(1399-1401)TCA>TTA	p.S467L		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	467	ATP (By similarity).|Protein kinase.		S -> A (in CFC syndrome).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.S467L(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TGTTCCAAATGATCCAGATCC	0.383		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				17	132					0	0	0.000566183	0	0
SSBP1	6742	broad.mit.edu	37	7	141443419	141443419	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141443419G>A	uc003vwo.1	+	4	222	c.144G>A	c.(142-144)GTG>GTA	p.V48V	SSBP1_uc011kri.1_Silent_p.V48V|SSBP1_uc010lnp.1_Silent_p.V48V	NM_003143	NP_003134	Q04837	SSBP_HUMAN	single-stranded DNA binding protein 1 precursor	48	SSB.				DNA replication|positive regulation of helicase activity	mitochondrial nucleoid	single-stranded DNA binding			ovary(1)	1	Melanoma(164;0.0171)					TGAGACAGGTGGAAGGAAAAA	0.443													17	126					0	0	0.000958276	0	0
PRSS37	136242	broad.mit.edu	37	7	141536973	141536973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141536973C>T	uc003vws.1	-	4	878	c.506G>A	c.(505-507)GGA>GAA	p.G169E	PRSS37_uc011krk.1_Missense_Mutation_p.G156E|PRSS37_uc011krl.1_Missense_Mutation_p.G168E|PRSS37_uc003vwt.1_Missense_Mutation_p.G156E	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	169	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						GTGGCTTTTTCCTTGTTCTGT	0.433													12	84					0	0	0.000978159	0	0
OR9A4	130075	broad.mit.edu	37	7	141619132	141619132	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141619132T>C	uc003vwu.1	+	1	457	c.457T>C	c.(457-459)TTT>CTT	p.F153L		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					GGTGTTTGGGTTTCTTTTTCA	0.423													12	144					0	0	0.00136819	0	0
OR9A4	130075	broad.mit.edu	37	7	141619141	141619141	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141619141C>T	uc003vwu.1	+	1	466	c.466C>T	c.(466-468)CAA>TAA	p.Q156*		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					GTTTCTTTTTCAAATCTGGCC	0.413													26	132					0	0	0.000720815	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672621	141672621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141672621G>A	uc003vwx.1	-	1	953	c.869C>T	c.(868-870)CCC>CTC	p.P290L		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	290	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					ATGCCCAGAGGGACAAGCTGC	0.532													5	47					0	0	0.00198382	0	0
MGAM	8972	broad.mit.edu	37	7	141720782	141720782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141720782G>A	uc003vwy.2	+	5	511	c.457G>A	c.(457-459)GCC>ACC	p.A153T		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	153	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGGATTCACAGCCCGGTTGAA	0.338													7	57					0	0	0.00198382	0	0
MGAM	8972	broad.mit.edu	37	7	141752690	141752690	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141752690A>T	uc003vwy.2	+	26	3119	c.3065A>T	c.(3064-3066)AAG>ATG	p.K1022M		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1022	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATCTCCTTAAAGTCTTCCGTT	0.458													13	78					0	0	0.00185496	0	0
MGAM	8972	broad.mit.edu	37	7	141758086	141758086	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141758086C>T	uc003vwy.2	+	31	3831	c.3777C>T	c.(3775-3777)ATC>ATT	p.I1259I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1259	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACTCTGAGATCGCCAGCTTGT	0.498													30	225					0	0	0.0024448	0	0
MGAM	8972	broad.mit.edu	37	7	141795456	141795456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:141795456C>T	uc003vwy.2	+	41	4916	c.4862C>T	c.(4861-4863)ACC>ATC	p.T1621I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1621	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TATCTGTATACCTTGATGCAT	0.502													21	142					0	0	0.00229938	0	0
PRSS1	5644	broad.mit.edu	37	7	142459835	142459835	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142459835G>A	uc003wak.2	+	3	428	c.411G>A	c.(409-411)ACG>ACA	p.T137T	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Silent_p.T77T	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	137	Peptidase S1.		T -> M (in a colorectal cancer sample; somatic mutation).		digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity	p.T137M(1)		large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CCACTGGCACGAAGTGCCTCA	0.552									Hereditary_Pancreatitis				12	55					0	0	0.000422831	0	0
TRY6	154754	broad.mit.edu	37	7	142482271	142482271	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142482271C>T	uc011ksq.1	+	5	734	c.651C>T	c.(649-651)GGC>GGT	p.G217G	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						TCTCCTGGGGCTATGGCTGTG	0.517													5	37					0	0	0.00116845	0	0
TRPV6	55503	broad.mit.edu	37	7	142572253	142572253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142572253C>T	uc003wbx.1	-	11	1659	c.1443G>A	c.(1441-1443)ATG>ATA	p.M481I	TRPV6_uc003wbw.1_Missense_Mutation_p.M267I|TRPV6_uc010lou.1_Missense_Mutation_p.M352I	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	481	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CCTTCTGAATCATGATGGTGA	0.458													11	88					0	0	0.000978159	0	0
TRPV6	55503	broad.mit.edu	37	7	142572683	142572683	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142572683G>A	uc003wbx.1	-	10	1476	c.1260C>T	c.(1258-1260)ATC>ATT	p.I420I	TRPV6_uc003wbw.1_Silent_p.I206I|TRPV6_uc010lou.1_Silent_p.I291I	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	420	Helical; (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GGCCCCCAAGGATGGTCTGTC	0.542													12	78					0	0	0.00316338	0	0
TRPV5	56302	broad.mit.edu	37	7	142630494	142630494	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142630494G>A	uc003wby.1	-	1	327	c.63C>T	c.(61-63)TCC>TCT	p.S21S	TRPV5_uc003wbz.2_Silent_p.S21S	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	21	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TGACCAGAAAGGAGGGCAGAA	0.537													14	71					0	0	0.00316338	0	0
KEL	3792	broad.mit.edu	37	7	142650990	142650990	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142650990C>T	uc003wcb.2	-	9	1188	c.978G>A	c.(976-978)CCG>CCA	p.P326P		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	326	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TCAGGGACATCGGTGTGAATG	0.522													51	16					0	0	0.00361006	0	0
KEL	3792	broad.mit.edu	37	7	142651377	142651377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142651377G>A	uc003wcb.2	-	8	1028	c.818C>T	c.(817-819)TCC>TTC	p.S273F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	273	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GATTGACAAGGAAGAGTGTTC	0.542													7	44					0	0	0.00198382	0	0
KEL	3792	broad.mit.edu	37	7	142658153	142658153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142658153G>A	uc003wcb.2	-	4	472	c.262C>T	c.(262-264)CAT>TAT	p.H88Y		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	88	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GCCAGGTAATGATCCCGGAGA	0.542													7	49					0	0	0.00307968	0	0
OR9A2	135924	broad.mit.edu	37	7	142723401	142723401	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142723401C>T	uc003wcc.1	-	1	819	c.819G>A	c.(817-819)TTG>TTA	p.L273L		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					ACACAGAAACCAACAGGGAAA	0.458													8	75					0	0	0.00307968	0	0
OR6V1	346517	broad.mit.edu	37	7	142749652	142749652	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:142749652C>A	uc011ksv.1	+	1	215	c.215C>A	c.(214-216)ACC>AAC	p.T72N		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					ATCTTGGTAACCATGACTGCA	0.493													19	115					6.49762e-13	1.82501e-12	0.00074312	1	0
TAS2R60	338398	broad.mit.edu	37	7	143140874	143140874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:143140874C>T	uc011ktg.1	+	1	329	c.329C>T	c.(328-330)TCC>TTC	p.S110F	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	110	Cytoplasmic (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					ACCTTATGGTCCTCTACCTGG	0.483													17	135					0	0	0.000958276	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141184	143141184	+	Missense_Mutation	SNP	G	A	A	rs141559059		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:143141184G>A	uc011ktg.1	+	1	639	c.639G>A	c.(637-639)ATG>ATA	p.M213I	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	213	Cytoplasmic (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity	p.M213I(2)		skin(6)	6	Melanoma(164;0.172)					TCATTTGCATGATTTTGCTCA	0.463													74	50					0	0	0.00361006	0	0
OR2F2	135948	broad.mit.edu	37	7	143633204	143633204	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:143633204G>A	uc011ktv.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					ATAGTCTAAGGAATAAAGAGG	0.438													10	57					0	0	0.00136819	0	0
OR6B1	135946	broad.mit.edu	37	7	143701904	143701904	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:143701904T>A	uc003wdt.1	+	1	815	c.815T>A	c.(814-816)ATT>AAT	p.I272N		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					AACAAAATTATTTCCATCTTC	0.418													64	32					0	0	0.00361006	0	0
OR2A12	346525	broad.mit.edu	37	7	143793046	143793046	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:143793046G>A	uc011kty.1	+	1	846	c.846G>A	c.(844-846)CCG>CCA	p.P282P		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					TTTTCAACCCGATCCTGAACC	0.468													21	204					0	0	0.00395357	0	0
OR2A2	442361	broad.mit.edu	37	7	143807311	143807311	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:143807311G>A	uc011ktz.1	+	1	636	c.636G>A	c.(634-636)TTG>TTA	p.L212L		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CTCTTTCCTTGATTCTGGTCT	0.527													39	28					0	0	0.00321405	0	0
NOBOX	135935	broad.mit.edu	37	7	144097406	144097406	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:144097406C>T	uc011kue.1	-	5	845	c.845_splice	c.e5-1	p.D282_splice		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox						cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					TCCAGCTGATCTGAAAGAAGA	0.517													5	60					0	0	0.00307968	0	0
NOBOX	135935	broad.mit.edu	37	7	144099029	144099029	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:144099029G>A	uc011kue.1	-	3	225	c.225C>T	c.(223-225)CCC>CCT	p.P75P		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	75					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GTATCTCTAAGGGATCATGTT	0.507													39	32					0	0	0.00361006	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146536841	146536841	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:146536841C>T	uc003weu.1	+	3	763	c.247C>T	c.(247-249)CAA>TAA	p.Q83*		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	83	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CGACCATTATCAATGGCTTCA	0.468										HNSCC(39;0.1)			14	52					0	0	0.00074312	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147183040	147183040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:147183040C>T	uc003weu.1	+	11	2200	c.1684C>T	c.(1684-1686)CAC>TAC	p.H562Y		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	562	EGF-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGTGCCCAATCACTGTGAGCA	0.458										HNSCC(39;0.1)			18	115					0	0	0.00278032	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148080974	148080974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:148080974G>A	uc003weu.1	+	22	4225	c.3709G>A	c.(3709-3711)GAT>AAT	p.D1237N	CNTNAP2_uc003wev.1_Missense_Mutation_p.D14N	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1237	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GGATCACCTGGATTCAGGTAA	0.383										HNSCC(39;0.1)			20	9					0	0	0.00278032	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148112653	148112653	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:148112653A>G	uc003weu.1	+	24	4457	c.3941A>G	c.(3940-3942)AAC>AGC	p.N1314S	CNTNAP2_uc003wev.1_Missense_Mutation_p.N91S	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1314	Cytoplasmic (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATCATGAACAACGACCCCAAC	0.542										HNSCC(39;0.1)			9	64					0	0	0.000442599	0	0
CUL1	8454	broad.mit.edu	37	7	148489873	148489873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:148489873C>T	uc010lpg.2	+	17	2388	c.1862C>T	c.(1861-1863)ACT>ATT	p.T621I	CUL1_uc003wey.2_Missense_Mutation_p.T621I|CUL1_uc003wez.2_Missense_Mutation_p.T511I|CUL1_uc003wfa.2_Missense_Mutation_p.T282I	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	621					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			GATGCCTACACTGTGCAGCAG	0.453													4	40					0	0	0.000602214	0	0
ZNF425	155054	broad.mit.edu	37	7	148800740	148800740	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:148800740A>G	uc003wfj.2	-	4	2296	c.2223T>C	c.(2221-2223)ATT>ATC	p.I741I		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	741	C2H2-type 19.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CATGCACTGCAATGTGGGTCT	0.582													4	38					0	0	0.00024832	0	0
ZNF777	27153	broad.mit.edu	37	7	149152685	149152685	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:149152685G>A	uc003wfv.2	-	2	592	c.429C>T	c.(427-429)TCC>TCT	p.S143S		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GAACTGTTGGGGAAAGGGTCA	0.587													16	155					0	0	0.000422831	0	0
ZNF777	27153	broad.mit.edu	37	7	149153091	149153091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:149153091G>A	uc003wfv.2	-	2	186	c.23C>T	c.(22-24)CCT>CTT	p.P8L		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GAACGACAGAGGTGATGAGCG	0.502													7	54					0	0	0.000274275	0	0
ZNF767	79970	broad.mit.edu	37	7	149318378	149318378	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:149318378G>A	uc003wfy.3	-	2		c.522C>T			ZNF767_uc003wfx.2_RNA|ZNF767_uc011kuq.1_RNA	NR_027789				Homo sapiens cDNA FLJ12700 fis, clone NT2RP1000721.											central_nervous_system(1)	1	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00434)			TGCTGCCCGGGGGCAGCCGCA	0.682													15	77					0	0	0.000566183	0	0
SSPO	23145	broad.mit.edu	37	7	149488688	149488688	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:149488688G>A	uc010lpk.2	+	35	5139	c.5139G>A	c.(5137-5139)TGG>TGA	p.W1713*		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1713	TSP type-1 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTGGGCCCTGGGGCCAGGGCC	0.731													5	0					0	0	0.00116845	0	0
SSPO	23145	broad.mit.edu	37	7	149523216	149523216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:149523216G>A	uc010lpk.2	+	103	14299	c.14299G>A	c.(14299-14301)GGG>AGG	p.G4767R	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_RNA	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4767	TSP type-1 24.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TCCAGTCCTTGGGCCTTGGTC	0.627													10	28					0	0	0.000673444	0	0
LRRC61	65999	broad.mit.edu	37	7	150034284	150034284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150034284C>T	uc003wgv.2	+	3	1008	c.334C>T	c.(334-336)CCG>TCG	p.P112S	LRRC61_uc003wgx.2_Missense_Mutation_p.P112S|LRRC61_uc003wgw.2_Missense_Mutation_p.P112S|LRRC61_uc003wgz.3_Missense_Mutation_p.P112S	NM_023942	NP_076431	Q9BV99	LRC61_HUMAN	leucine rich repeat containing 61	112	LRR 4.										0			OV - Ovarian serous cystadenocarcinoma(82;0.011)			ACTGGCCACCCCGGGCCAGCT	0.642													7	22					0	0	0.00198382	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164415	150164415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150164415G>A	uc003whj.2	+	2	959	c.629G>A	c.(628-630)AGG>AAG	p.R210K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	210						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GAAGGCAGCAGGTTTCAAGTA	0.403													9	58					0	0	0.000274275	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174354	150174354	+	Missense_Mutation	SNP	C	T	T	rs138720266		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150174354C>T	uc003whj.2	+	5	1814	c.1484C>T	c.(1483-1485)CCT>CTT	p.P495L		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	495						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTGGACACTCCTTCCTTCAAC	0.562													5	67					0	0	0.00198382	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325013	150325013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150325013C>T	uc003whn.2	-	3	1097	c.673G>A	c.(673-675)GAA>AAA	p.E225K	GIMAP6_uc003whm.2_Missense_Mutation_p.E145K	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	225							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTTCGTTTTCCCACATAATG	0.517													14	151					0	0	0.000422831	0	0
GIMAP6	474344	broad.mit.edu	37	7	150327167	150327167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150327167G>A	uc003whn.2	-	2	488	c.64C>T	c.(64-66)CCT>TCT	p.P22S	GIMAP6_uc003whm.2_Silent_p.I16I	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	22							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCAGCACAGGATCCTGGGAC	0.453													29	169					0	0	0.00375469	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389490	150389490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150389490G>A	uc003who.2	+	3	204	c.116G>A	c.(115-117)GGG>GAG	p.G39E	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	39						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGTGCTGCAGGGAACAGCATC	0.512													4	25					0	0	0.00024832	0	0
GIMAP1	170575	broad.mit.edu	37	7	150416146	150416146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150416146G>A	uc003whq.2	+	2	98	c.11G>A	c.(10-12)AGG>AAG	p.R4K	GIMAP1_uc003whp.2_Missense_Mutation_p.R12K	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	4	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATGGGAGGAAGGAAGATGGCG	0.383													8	61					0	0	0.000442599	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417206	150417206	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150417206C>G	uc003whq.2	+	3	201	c.114C>G	c.(112-114)GCC>GCG	p.A38A	GIMAP1_uc003whp.2_Silent_p.A46A	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	38	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAACAGGGGCCGGGAAGAGCG	0.602													25	127					0	0	0.00395357	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417905	150417905	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150417905C>T	uc003whq.2	+	3	900	c.813C>T	c.(811-813)CCC>CCT	p.P271P	GIMAP1_uc003whp.2_Silent_p.P279P	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	271	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGAAGTCCCCCAGGAGCTGGA	0.746													12	0					0	0	0.00136819	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439344	150439344	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150439344G>A	uc003whr.1	+	3	469	c.117G>A	c.(115-117)GGG>GGA	p.G39G	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	39	Cytoplasmic (Potential).|GTP (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAGGCTGCGGGAAAAGTGCCA	0.502													11	58					0	0	0.000673444	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439358	150439358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150439358G>A	uc003whr.1	+	3	483	c.131G>A	c.(130-132)GGG>GAG	p.G44E	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	44	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGTGCCACAGGGAACAGCATC	0.527													36	22					0	0	0.000953801	0	0
ABP1	26	broad.mit.edu	37	7	150555081	150555081	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150555081A>G	uc003why.1	+	3	5741	c.1523A>G	c.(1522-1524)AAC>AGC	p.N508S	ABP1_uc003whz.1_Missense_Mutation_p.N508S|ABP1_uc003wia.1_Missense_Mutation_p.N508S	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	508					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CTGATTGGCAACATACACACT	0.582													12	61					0	0	0.00136819	0	0
SLC4A2	6522	broad.mit.edu	37	7	150773192	150773192	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:150773192C>T	uc003wit.3	+	22	3820	c.3564C>T	c.(3562-3564)GCC>GCT	p.A1188A	SLC4A2_uc011kve.1_Silent_p.A1179A|SLC4A2_uc003wiu.3_Silent_p.A1174A|SLC4A2_uc003wiv.3_Silent_p.A382A|uc011kvf.1_Missense_Mutation_p.G85S	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	1188	Membrane (anion exchange).|Helical; (Potential).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTCCCTGGCCTTCCCCTTCA	0.642													11	72					0	0	0.00136819	0	0
NUB1	51667	broad.mit.edu	37	7	151046258	151046259	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:151046258_151046259GG>AA	uc003wjx.2	+	3	294_295	c.289_290GG>AA	c.(289-291)GGA>AAA	p.G97K	NUB1_uc011kvi.1_Missense_Mutation_p.G97K|NUB1_uc003wjv.2_RNA|NUB1_uc003wjw.2_Missense_Mutation_p.G73K|NUB1_uc010lqb.2_RNA|NUB1_uc003wjy.2_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	73					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		GCGTGGAACAGGAAATGACAAT	0.381													27	223					0	0	6.4e-05	0	0
MLL3	58508	broad.mit.edu	37	7	151845611	151845611	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:151845611C>T	uc003wla.2	-	52	13620	c.13401G>A	c.(13399-13401)AAG>AAA	p.K4467K	MLL3_uc003wkz.2_Silent_p.K3585K|MLL3_uc003wkx.2_Silent_p.K625K|MLL3_uc003wky.2_Silent_p.K2031K	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4467					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGGCACCCGTCTTGTGACAGA	0.453			N		medulloblastoma								30	195					0	0	0.00375469	0	0
INSIG1	3638	broad.mit.edu	37	7	155094039	155094039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:155094039C>T	uc003wly.2	+	4	827	c.616C>T	c.(616-618)CGT>TGT	p.R206C	INSIG1_uc011kvu.1_Missense_Mutation_p.R54C|INSIG1_uc003wlz.2_Intron	NM_005542	NP_005533	O15503	INSI1_HUMAN	insulin induced gene 1 isoform 1	206	Cytoplasmic.				cell proliferation|ER-nuclear sterol response pathway	endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GACATTTGATCGTTCCAGAAG	0.443													15	115					0	0	0.000566183	0	0
UBE3C	9690	broad.mit.edu	37	7	156963047	156963048	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:156963047_156963048CC>TT	uc010lqs.2	+	4	557_558	c.245_246CC>TT	c.(244-246)TCC>TTT	p.S82F	UBE3C_uc003wnf.2_Missense_Mutation_p.S39F|UBE3C_uc003wng.2_Missense_Mutation_p.S82F	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	82					protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		TTGTCACAGTCCGGGGGCGCTT	0.411													23	179					0	0	6.4e-05	0	0
UBE3C	9690	broad.mit.edu	37	7	156974994	156974994	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:156974994C>T	uc010lqs.2	+	8	1275	c.963C>T	c.(961-963)TTC>TTT	p.F321F	UBE3C_uc003wnf.2_Silent_p.F278F|UBE3C_uc003wng.2_Silent_p.F321F	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	321					protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		TTTTCTATTTCGTTTTAACTG	0.418													12	91					0	0	0.00244969	0	0
PTPRN2	5799	broad.mit.edu	37	7	157341685	157341685	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:157341685G>T	uc003wno.2	-	22	3052	c.2931C>A	c.(2929-2931)ACC>ACA	p.T977T	PTPRN2_uc003wnp.2_Silent_p.T960T|PTPRN2_uc003wnq.2_Silent_p.T948T|PTPRN2_uc003wnr.2_Silent_p.T939T|PTPRN2_uc011kwa.1_Silent_p.T1000T|PTPRN2_uc003wnn.2_RNA	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	977	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		AGTGCTCCAGGGTCGCTGCGA	0.542													7	95					0.00307968	0.00853147	0.00307968	1	0
PTPRN2	5799	broad.mit.edu	37	7	157959893	157959893	+	Missense_Mutation	SNP	C	T	T	rs144856548	byFrequency	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:157959893C>T	uc003wno.2	-	6	761	c.640G>A	c.(640-642)GAG>AAG	p.E214K	PTPRN2_uc003wnp.2_Missense_Mutation_p.E197K|PTPRN2_uc003wnq.2_Missense_Mutation_p.E214K|PTPRN2_uc003wnr.2_Missense_Mutation_p.E176K|PTPRN2_uc011kwa.1_Missense_Mutation_p.E237K	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	214	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		AGGAGGTCCTCGCGGAGCTGG	0.647													37	14					0	0	0.000953801	0	0
WDR60	55112	broad.mit.edu	37	7	158723148	158723148	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:158723148C>T	uc003woe.3	+	21	2646	c.2488C>T	c.(2488-2490)CTG>TTG	p.L830L	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Silent_p.L462L	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	830										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		CTTTTTAGGTCTGATGCCTGG	0.398													6	36					0	0	0.00198382	0	0
VIPR2	7434	broad.mit.edu	37	7	158829453	158829453	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:158829453C>T	uc003woh.2	-	7	924	c.738G>A	c.(736-738)CTG>CTA	p.L246L	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	246	Helical; Name=4; (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		CCCATCCGATCAGGAGGTAGG	0.572													5	18					0	0	0.000602214	0	0
CSMD1	64478	broad.mit.edu	37	8	2886843	2886843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:2886843C>T	uc011kwk.1	-	51	8246	c.7856G>A	c.(7855-7857)CGA>CAA	p.R2619Q	CSMD1_uc011kwj.1_Missense_Mutation_p.R1948Q|CSMD1_uc010lrg.2_Missense_Mutation_p.R687Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2619	Extracellular (Potential).|Sushi 16.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCACTTACCTCGACAGCTTGG	0.522													5	23					0	0	0.00116845	0	0
CSMD1	64478	broad.mit.edu	37	8	2965246	2965246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:2965246C>T	uc011kwk.1	-	45	7222	c.6832G>A	c.(6832-6834)GAA>AAA	p.E2278K	CSMD1_uc011kwj.1_Missense_Mutation_p.E1670K|CSMD1_uc010lrg.2_Missense_Mutation_p.E346K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2278	Extracellular (Potential).|Sushi 13.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTACCTATTTCGAAATCATCA	0.358													19	113					0	0	0.00278032	0	0
CSMD1	64478	broad.mit.edu	37	8	3165250	3165250	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:3165250C>A	uc011kwk.1	-	25	4310	c.3920G>T	c.(3919-3921)TGG>TTG	p.W1307L	CSMD1_uc011kwj.1_Missense_Mutation_p.W699L|CSMD1_uc003wqe.2_Missense_Mutation_p.W463L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1307	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTCTATAATCCAGGTGCAGTG	0.453													20	123					4.26978e-12	1.19837e-11	0.00332997	1	0
CSMD1	64478	broad.mit.edu	37	8	3216752	3216752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:3216752G>A	uc011kwk.1	-	21	3619	c.3229C>T	c.(3229-3231)CGT>TGT	p.R1077C	CSMD1_uc011kwj.1_Missense_Mutation_p.R469C|CSMD1_uc003wqe.2_Missense_Mutation_p.R233C	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1077	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCTTCTAAACGATATCCCAGG	0.557													9	48					0	0	0.000673444	0	0
CSMD1	64478	broad.mit.edu	37	8	3432542	3432542	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:3432542G>A	uc011kwk.1	-	10	1662	c.1272C>T	c.(1270-1272)ACC>ACT	p.T424T		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	424	CUB 3.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AATTAGGGGAGGTAATGACGC	0.502													9	26					0	0	0.000274275	0	0
CSMD1	64478	broad.mit.edu	37	8	3611545	3611545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:3611545G>A	uc011kwk.1	-	6	1228	c.838C>T	c.(838-840)CCC>TCC	p.P280S		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	280	Extracellular (Potential).|CUB 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ACTGGAGAGGGGAGGTTCATG	0.453													8	38					0	0	0.00307968	0	0
CSMD1	64478	broad.mit.edu	37	8	3889576	3889576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:3889576C>T	uc011kwk.1	-	4	851	c.461G>A	c.(460-462)GGA>GAA	p.G154E		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	154	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATGCAGAACTCCTTTCAGGAT	0.448													13	42					0	0	0.00316338	0	0
CSMD1	64478	broad.mit.edu	37	8	3889615	3889615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:3889615G>A	uc011kwk.1	-	4	812	c.422C>T	c.(421-423)CCT>CTT	p.P141L		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	141	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGTGTGGCTAGGTAAAACTAT	0.383													9	39					0	0	0.000673444	0	0
ANGPT2	285	broad.mit.edu	37	8	6420387	6420387	+	Silent	SNP	C	T	T	rs147566463		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:6420387C>T	uc003wqj.3	-	1	398	c.69G>A	c.(67-69)CGG>CGA	p.R23R	MCPH1_uc003wqi.2_Intron|ANGPT2_uc003wqk.3_Silent_p.R23R|ANGPT2_uc010lri.2_Silent_p.R23R|ANGPT2_uc003wql.3_Silent_p.R23R	NM_001147	NP_001138	O15123	ANGP2_HUMAN	angiopoietin 2 isoform a precursor	23					angiogenesis|blood coagulation|leukocyte migration|negative regulation of blood vessel endothelial cell migration|negative regulation of positive chemotaxis|Tie receptor signaling pathway	extracellular space	metal ion binding|receptor tyrosine kinase binding			upper_aerodigestive_tract(1)	1		Hepatocellular(245;0.0663)		Colorectal(4;0.0142)|READ - Rectum adenocarcinoma(4;0.19)|COAD - Colon adenocarcinoma(4;0.226)		CCATGCTCTTCCGAAAGTTGT	0.473													7	39					0	0	0.00198382	0	0
AGPAT5	55326	broad.mit.edu	37	8	6614771	6614771	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:6614771G>A	uc003wqo.2	+	8	1269	c.957G>A	c.(955-957)AAG>AAA	p.K319K	AGPAT5_uc011kwm.1_3'UTR	NM_018361	NP_060831	Q9NUQ2	PLCE_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 5	319					phospholipid biosynthetic process	integral to membrane|mitochondrion	1-acylglycerol-3-phosphate O-acyltransferase activity				0			STAD - Stomach adenocarcinoma(24;0.0578)	READ - Rectum adenocarcinoma(644;0.156)|COAD - Colon adenocarcinoma(149;0.191)		TAAGTATCAAGAAGACTTTAC	0.378													12	69					0	0	0.000978159	0	0
ERI1	90459	broad.mit.edu	37	8	8877879	8877879	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:8877879T>C	uc011kwu.1	+	6	972	c.712T>C	c.(712-714)TTC>CTC	p.F238L	ERI1_uc003wsk.2_Missense_Mutation_p.F238L	NM_153332	NP_699163	Q8IV48	ERI1_HUMAN	three prime histone mRNA exonuclease 1	238	Exonuclease.				gene silencing by RNA|rRNA 3'-end processing	cytoplasm|histone pre-mRNA 3'end processing complex|nucleolus	3'-5' exonuclease activity|histone pre-mRNA stem-loop binding|metal ion binding|ribosome binding|rRNA binding				0					Adenosine monophosphate(DB00131)	TATGAGTAAGTTCTTGAACAT	0.299													20	71					0	0	0.00152264	0	0
TNKS	8658	broad.mit.edu	37	8	9592514	9592514	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:9592514G>C	uc003wss.2	+	16	2458	c.2453G>C	c.(2452-2454)AGA>ACA	p.R818T	TNKS_uc011kww.1_Missense_Mutation_p.R581T|TNKS_uc010lrt.1_RNA	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	818					mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		TGCCTGGCAAGAGTGCAGAAG	0.532													9	38					0	0	0.00136819	0	0
TNKS	8658	broad.mit.edu	37	8	9610109	9610109	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:9610109C>T	uc003wss.2	+	20	3131	c.3126C>T	c.(3124-3126)CAC>CAT	p.H1042H	TNKS_uc011kww.1_Silent_p.H805H	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	1042	SAM.				mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		GCCTTGAACACCTTCGGGATA	0.269													27	126					0	0	0.00209593	0	0
MSRA	4482	broad.mit.edu	37	8	10285727	10285727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:10285727G>A	uc003wsx.2	+	6	810	c.613G>A	c.(613-615)GAA>AAA	p.E205K	MSRA_uc011kwx.1_Missense_Mutation_p.E165K|MSRA_uc003wsz.2_Missense_Mutation_p.E162K|MSRA_uc003wsy.2_Missense_Mutation_p.E139K	NM_012331	NP_036463	Q9UJ68	MSRA_HUMAN	methionine sulfoxide reductase A isoform a	205					methionine metabolic process|protein modification process|response to oxidative stress	mitochondrion|nucleus	peptide-methionine-(S)-S-oxide reductase activity				0		Myeloproliferative disorder(644;0.178)			L-Methionine(DB00134)	CTACTATGCGGAAGACTACCA	0.557													25	8					0	0	0.00106085	0	0
SOX7	83595	broad.mit.edu	37	8	10583325	10583325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:10583325C>T	uc003wtf.2	-	2	1169	c.1090G>A	c.(1090-1092)GGT>AGT	p.G364S	SOX7_uc011kwz.1_Missense_Mutation_p.G416S	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	364	Sox C-terminal.				endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		TCTGTGGGACCCGTTGGTGTC	0.612													4	15					0	0	0.000602214	0	0
GATA4	2626	broad.mit.edu	37	8	11612578	11612578	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:11612578G>A	uc003wuc.2	+	5	1487	c.933G>A	c.(931-933)CGG>CGA	p.R311R	GATA4_uc003wub.1_Silent_p.R105R|GATA4_uc011kxc.1_Silent_p.R312R	NM_002052	NP_002043	P43694	GATA4_HUMAN	GATA binding protein 4	311					atrial septum primum morphogenesis|atrial septum secundum morphogenesis|blood coagulation|cardiac right ventricle morphogenesis|cell-cell signaling|embryonic foregut morphogenesis|embryonic heart tube anterior/posterior pattern formation|endocardial cushion development|endoderm development|heart looping|intestinal epithelial cell differentiation|male gonad development|positive regulation of angiogenesis|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|response to drug|transcription from RNA polymerase II promoter|ventricular septum development	nucleoplasm	activating transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(15;0.0839)		STAD - Stomach adenocarcinoma(15;0.00225)	COAD - Colon adenocarcinoma(149;0.199)		TTGCAATGCGGAAAGAGGGGA	0.458													6	42					0	0	0.00307968	0	0
GATA4	2626	broad.mit.edu	37	8	11612605	11612605	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:11612605G>A	uc003wuc.2	+	5	1514	c.960G>A	c.(958-960)CGG>CGA	p.R320R	GATA4_uc003wub.1_Silent_p.R114R|GATA4_uc011kxc.1_Silent_p.R321R	NM_002052	NP_002043	P43694	GATA4_HUMAN	GATA binding protein 4	320					atrial septum primum morphogenesis|atrial septum secundum morphogenesis|blood coagulation|cardiac right ventricle morphogenesis|cell-cell signaling|embryonic foregut morphogenesis|embryonic heart tube anterior/posterior pattern formation|endocardial cushion development|endoderm development|heart looping|intestinal epithelial cell differentiation|male gonad development|positive regulation of angiogenesis|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|response to drug|transcription from RNA polymerase II promoter|ventricular septum development	nucleoplasm	activating transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(15;0.0839)		STAD - Stomach adenocarcinoma(15;0.00225)	COAD - Colon adenocarcinoma(149;0.199)		CCAGAAAACGGAAGCCCAAGA	0.463													10	40					0	0	0.00185496	0	0
USP17L2	377630	broad.mit.edu	37	8	11995102	11995102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:11995102C>T	uc003wvc.1	-	1	1168	c.1168G>A	c.(1168-1170)GAA>AAA	p.E390K	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	390					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						GCTCTTGGTTCCCTGCCTCTT	0.557													13	32					0	0	0.00074312	0	0
C8orf79	57604	broad.mit.edu	37	8	12879296	12879296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:12879296C>T	uc010lsq.2	+	5	1600	c.1108C>T	c.(1108-1110)CCT>TCT	p.P370S	C8orf79_uc011kxw.1_Intron|C8orf79_uc003wwj.3_Missense_Mutation_p.P283S|C8orf79_uc010lsr.2_Missense_Mutation_p.P244S	NM_020844	NP_065895	Q9P272	K1456_HUMAN	hypothetical protein LOC57604 isoform 1	370							methyltransferase activity				0						AGATGATAATCCTTCTGCTAG	0.403													20	11					0	0	0.00152264	0	0
SGCZ	137868	broad.mit.edu	37	8	13948047	13948047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:13948047C>T	uc003wwq.2	-	8	1504	c.844G>A	c.(844-846)GAA>AAA	p.E282K	SGCZ_uc010lss.2_Missense_Mutation_p.E235K	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	269	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		ACGCAGAGTTCATACACTGTC	0.473													6	20					0	0	0.00116845	0	0
SGCZ	137868	broad.mit.edu	37	8	14095147	14095147	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:14095147C>T	uc003wwq.2	-	4	1038	c.378G>A	c.(376-378)GTG>GTA	p.V126V	SGCZ_uc010lss.2_Silent_p.V79V	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	113	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		TTCTTGCATTCACTGTGACAT	0.368													112	137					0	0	0.00361006	0	0
MTUS1	57509	broad.mit.edu	37	8	17511000	17511000	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:17511000C>T	uc003wxv.2	-	11	3696	c.3222G>A	c.(3220-3222)AAG>AAA	p.K1074K	MTUS1_uc003wxt.2_Silent_p.K321K|MTUS1_uc011kyg.1_Silent_p.K219K|MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Silent_p.K1020K|MTUS1_uc003wxs.2_Silent_p.K240K	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	1074	Potential.					Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		CATGGCCTTTCTTAATTTCTG	0.368													9	43					0	0	0.000673444	0	0
PCM1	5108	broad.mit.edu	37	8	17871517	17871517	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:17871517C>T	uc003wyi.3	+	35	5978	c.5556C>T	c.(5554-5556)GTC>GTT	p.V1852V	PCM1_uc011kyh.1_Silent_p.V1844V|PCM1_uc003wyj.3_Intron|PCM1_uc011kyi.1_Silent_p.V651V|PCM1_uc011kyj.1_Silent_p.V608V|PCM1_uc003wyk.3_Silent_p.V534V|PCM1_uc011kyk.1_Silent_p.V468V	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1852					centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		GCAAAAATGTCCCATTGGAAC	0.303			T	RET|JAK2	papillary thyroid|CML|MPD								5	38					0	0	0.00198382	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19276183	19276183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:19276183G>A	uc011kyn.1	-	8	2275	c.1211C>T	c.(1210-1212)CCC>CTC	p.P404L	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.P404L|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.P403L	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	404	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		CTGTTCCAAGGGAGGGACTGC	0.463													8	23					0	0	0.000274275	0	0
LPL	4023	broad.mit.edu	37	8	19805727	19805727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:19805727C>T	uc003wzk.3	+	2	495	c.125C>T	c.(124-126)GCC>GTC	p.A42V		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	42					fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	AGTAAATTTGCCCTAAGGACC	0.438													6	57					0	0	0.00307968	0	0
GFRA2	2675	broad.mit.edu	37	8	21560414	21560414	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:21560414T>G	uc003wzu.1	-	7	1796	c.1121A>C	c.(1120-1122)CAG>CCG	p.Q374P	GFRA2_uc003wzv.1_Missense_Mutation_p.Q269P|GFRA2_uc003wzw.1_Missense_Mutation_p.Q241P	NM_001495	NP_001486	O00451	GFRA2_HUMAN	GDNF family receptor alpha 2 isoform a	374						anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity				0				Colorectal(74;0.0189)|COAD - Colon adenocarcinoma(73;0.0727)		CCGAGGGGCCTGGGTGGCCTG	0.627													3	18					0	0	6.4e-05	0	0
LGI3	203190	broad.mit.edu	37	8	22006369	22006369	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:22006369C>T	uc003xav.2	-	8	1240	c.951G>A	c.(949-951)AGG>AGA	p.R317R	LGI3_uc010ltu.2_Silent_p.R293R	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	317	EAR 3.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		TGTCTTGCAGCCTGGTGAAGC	0.602													8	16					0	0	0.000442599	0	0
BMP1	649	broad.mit.edu	37	8	22033798	22033798	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:22033798C>T	uc003xbg.2	+	3	649	c.405C>T	c.(403-405)ATC>ATT	p.I135I	BMP1_uc011kzb.1_RNA|BMP1_uc003xba.2_Silent_p.I135I|BMP1_uc003xbb.2_Silent_p.I135I|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_5'UTR|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_5'UTR|BMP1_uc011kzc.1_5'UTR|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	135	Metalloprotease.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		ATGGGGTCATCCCCTTTGTCA	0.647													9	29					0	0	0.000978159	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23003424	23003424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:23003424C>T	uc003xcz.1	-	5	585	c.493G>A	c.(493-495)GGG>AGG	p.G165R		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	165	Extracellular (Potential).|TNFR-Cys 3.				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		TTGACCATCCCTCTGGGACAC	0.562													17	58					0	0	0.00121646	0	0
ADAM28	10863	broad.mit.edu	37	8	24199149	24199149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:24199149C>T	uc003xdy.2	+	16	1792	c.1709C>T	c.(1708-1710)TCG>TTG	p.S570L	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.S257L	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	570	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CAAGGTGGGTCGGATAATTTG	0.418													22	97					0	0	0.00395357	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24254924	24254924	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:24254924G>A	uc003xdz.2	+	6	802	c.582G>A	c.(580-582)GGG>GGA	p.G194G	ADAMDEC1_uc010lub.2_Silent_p.G115G|ADAMDEC1_uc011lab.1_Silent_p.G115G	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	194					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GCACTGACGGGAAACAAGGCC	0.448													11	70					0	0	0.00244969	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24257714	24257714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:24257714G>A	uc003xdz.2	+	11	1263	c.1043G>A	c.(1042-1044)GGA>GAA	p.G348E	ADAMDEC1_uc010lub.2_Missense_Mutation_p.G269E|ADAMDEC1_uc011lab.1_Missense_Mutation_p.G269E	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	348	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GCTCTTGTAGGAGTGATGTCA	0.368													6	16					0	0	0.00116845	0	0
DOCK5	80005	broad.mit.edu	37	8	25246714	25246714	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:25246714T>G	uc003xeg.2	+	41	4376	c.4239T>G	c.(4237-4239)CCT>CCG	p.P1413P	PPP2R2A_uc003xek.2_Silent_p.P202P|DOCK5_uc003xei.2_Silent_p.P983P|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	1413	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		GTACCACGCCTCCTGGGGAAG	0.567													6	27					0	0	0.00198382	0	0
CDCA2	157313	broad.mit.edu	37	8	25341548	25341548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:25341548G>A	uc003xep.1	+	10	1666	c.1187G>A	c.(1186-1188)GGA>GAA	p.G396E	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Missense_Mutation_p.G396E|CDCA2_uc003xeq.1_Missense_Mutation_p.G381E|CDCA2_uc003xer.1_Missense_Mutation_p.G59E	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	396					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		GTTACTTTTGGAGAGGACTTA	0.368													18	89					0	0	0.000566183	0	0
EBF2	64641	broad.mit.edu	37	8	25708263	25708263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:25708263G>A	uc003xes.1	-	15	1560	c.1543C>T	c.(1543-1545)CCC>TCC	p.P515S	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	515	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		CCAACGGTGGGACTTGATGAC	0.383													10	24					0	0	0.000978159	0	0
STMN4	81551	broad.mit.edu	37	8	27098663	27098664	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:27098663_27098664CC>TT	uc003xfk.2	-	4	339_340	c.225_226GG>AA	c.(223-228)GGGGTT>GGAATT	p.V76I	STMN4_uc003xfj.2_Missense_Mutation_p.V103I|STMN4_uc011lai.1_Missense_Mutation_p.V103I|STMN4_uc011laj.1_Missense_Mutation_p.V67I|STMN4_uc011lak.1_Missense_Mutation_p.V103I|STMN4_uc010luo.2_Missense_Mutation_p.V76I			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;	76					intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		AACTCGGGAACCCCATCAAAGG	0.54													12	55					0	0	6.4e-05	0	0
PTK2B	2185	broad.mit.edu	37	8	27296843	27296843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:27296843C>T	uc003xfn.1	+	25	2570	c.1762C>T	c.(1762-1764)CCC>TCC	p.P588S	PTK2B_uc003xfo.1_Missense_Mutation_p.P588S|PTK2B_uc003xfp.1_Missense_Mutation_p.P588S|PTK2B_uc003xfq.1_Missense_Mutation_p.P588S|PTK2B_uc003xfr.1_Missense_Mutation_p.P334S	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	588	Protein kinase.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		GACTCGTCTCCCCATCAAATG	0.473													25	98					0	0	0.0024448	0	0
CHRNA2	1135	broad.mit.edu	37	8	27319156	27319156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:27319156C>T	uc010lur.2	-	7	2189	c.1580G>A	c.(1579-1581)GGA>GAA	p.G527E	CHRNA2_uc011lal.1_Missense_Mutation_p.G512E|CHRNA2_uc010lus.2_Missense_Mutation_p.G329E	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	527						cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	TCAGATCATTCCAGCTAGGAA	0.572													12	62					0	0	0.00185496	0	0
SCARA3	51435	broad.mit.edu	37	8	27516854	27516854	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:27516854C>T	uc003xga.1	+	5	1308	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	SCARA3_uc003xgb.1_Silent_p.F389F	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	389	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		CGCTGGGCTTCCACACCCATG	0.582													6	14					0	0	0.00116845	0	0
CCDC25	55246	broad.mit.edu	37	8	27610082	27610082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:27610082G>A	uc003xgc.2	-	5	304	c.191C>T	c.(190-192)CCA>CTA	p.P64L	CCDC25_uc003xgd.2_5'UTR|CCDC25_uc011lan.1_RNA|CCDC25_uc011lao.1_RNA|CCDC25_uc003xge.2_RNA|CCDC25_uc003xgf.1_RNA	NM_018246	NP_060716	Q86WR0	CCD25_HUMAN	coiled-coil domain containing 25	64											0		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0223)|KIRC - Kidney renal clear cell carcinoma(542;0.11)|Kidney(114;0.131)|Colorectal(74;0.154)		CACTTCCTTTGGGATGTCTTC	0.438													5	29					0	0	0.00198382	0	0
EXTL3	2137	broad.mit.edu	37	8	28573693	28573693	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:28573693C>T	uc003xgz.1	+	3	710	c.117C>T	c.(115-117)ATC>ATT	p.I39I		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	39	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TCTTTGTCATCCTGGTCTTCT	0.617													9	32					0	0	0.000978159	0	0
EXTL3	2137	broad.mit.edu	37	8	28575121	28575121	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:28575121C>T	uc003xgz.1	+	3	2138	c.1545C>T	c.(1543-1545)CTC>CTT	p.L515L		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	515	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		GCCGCTTTCTCTGGGAGACTT	0.552													17	50					0	0	0.00152264	0	0
KIF13B	23303	broad.mit.edu	37	8	28997989	28997989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:28997989C>T	uc003xhh.3	-	20	2539	c.2480G>A	c.(2479-2481)GGA>GAA	p.G827E	uc003xhi.1_RNA	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	827					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		ACCAACCTCTCCTTTCTGGTT	0.413													6	42					0	0	0.00198382	0	0
KIF13B	23303	broad.mit.edu	37	8	28998067	28998067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:28998067C>T	uc003xhh.3	-	20	2461	c.2402G>A	c.(2401-2403)GGG>GAG	p.G801E	uc003xhi.1_RNA	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	801					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		ATTGGCCACCCCAATGAGACT	0.413													11	43					0	0	0.000978159	0	0
PPP2CB	5516	broad.mit.edu	37	8	30651770	30651770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:30651770G>A	uc003xik.2	-	5	749	c.514C>T	c.(514-516)CCA>TCA	p.P172S		NM_004156	NP_004147	P62714	PP2AB_HUMAN	protein phosphatase 2, catalytic subunit, beta	172					protein dephosphorylation	chromosome, centromeric region|cytoplasm|nucleus|protein phosphatase type 2A complex|spindle pole	metal ion binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.095)|Kidney(114;0.114)	Vitamin E(DB00163)	TCTATGGATGGAGAGAGGCCA	0.348													11	53					0	0	0.00316338	0	0
TEX15	56154	broad.mit.edu	37	8	30694423	30694423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:30694423C>T	uc003xil.2	-	3	8228	c.8228G>A	c.(8227-8229)CGG>CAG	p.R2743Q		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2743										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AATTGGCTGCCGAAAATTAGA	0.408													17	54					0	0	0.00074312	0	0
TEX15	56154	broad.mit.edu	37	8	30703216	30703216	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:30703216C>T	uc003xil.2	-	1	3318	c.3318G>A	c.(3316-3318)AGG>AGA	p.R1106R		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1106	Ser-rich.									ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CCATACTTTTCCTAGAAAGGC	0.388													14	63					0	0	0.00185496	0	0
KCNU1	157855	broad.mit.edu	37	8	36675216	36675216	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:36675216C>G	uc010lvw.2	+	10	1131	c.1044C>G	c.(1042-1044)TTC>TTG	p.F348L	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	348	RCK N-terminal.|Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TGACCGCTTTCCTGAGGAATT	0.453													12	101					0	0	0.00136819	0	0
STAR	6770	broad.mit.edu	37	8	38005786	38005787	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:38005786_38005787CC>TT	uc003xkv.1	-	3	501_502	c.237_238GG>AA	c.(235-240)GGGGAG>GGAAAG	p.E80K	STAR_uc010lwc.1_Missense_Mutation_p.E42K	NM_001007243	NP_001007244	P49675	STAR_HUMAN	steroidogenic acute regulatory protein isoform	80	START.				C21-steroid hormone biosynthetic process	mitochondrial intermembrane space	cholesterol transporter activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.0151)|Lung NSC(58;0.0295)		READ - Rectum adenocarcinoma(644;0.188)		ATGGCCTCCTCCCCCTGCTGGA	0.574													5	18					0	0	6.4e-05	0	0
DDHD2	23259	broad.mit.edu	37	8	38109456	38109456	+	Silent	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:38109456T>A	uc003xlb.2	+	12	1748	c.1371T>A	c.(1369-1371)CCT>CCA	p.P457P	DDHD2_uc003xlc.2_Silent_p.P457P|DDHD2_uc003xld.2_Silent_p.P76P	NM_015214	NP_056029	O94830	DDHD2_HUMAN	DDHD domain containing 2 isoform 1	457					lipid catabolic process	centrosome	hydrolase activity|metal ion binding			large_intestine(1)|ovary(1)	2	Colorectal(12;0.000442)	all_lung(54;0.0657)|Lung NSC(58;0.175)	BRCA - Breast invasive adenocarcinoma(5;3.76e-25)|COAD - Colon adenocarcinoma(9;0.0977)			CCCCGCAGCCTGCTTCAGGGG	0.333													8	60					0	0	0.00307968	0	0
FGFR1	2260	broad.mit.edu	37	8	38275794	38275794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:38275794G>A	uc003xlp.2	-	11	2324	c.1382C>T	c.(1381-1383)TCT>TTT	p.S461F	FGFR1_uc010lwf.2_RNA|FGFR1_uc011lbo.1_Missense_Mutation_p.S459F|FGFR1_uc011lbp.1_Missense_Mutation_p.S372F|FGFR1_uc011lbq.1_Missense_Mutation_p.S370F|FGFR1_uc010lwk.2_Missense_Mutation_p.S451F	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	461	Cytoplasmic (Potential).				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	CTCATACTCAGAGACCCCTGC	0.542		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						9	42					0	0	0.000274275	0	0
TACC1	6867	broad.mit.edu	37	8	38677384	38677384	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:38677384T>C	uc010lwp.2	+	3	1001	c.622T>C	c.(622-624)TCC>CCC	p.S208P	TACC1_uc011lby.1_Missense_Mutation_p.S13P|TACC1_uc003xma.2_Intron|TACC1_uc003xlz.2_Missense_Mutation_p.S13P|TACC1_uc003xmc.3_Missense_Mutation_p.S13P|TACC1_uc011lbz.1_Missense_Mutation_p.S224P|TACC1_uc003xmb.3_Missense_Mutation_p.S163P|TACC1_uc003xme.1_Intron|TACC1_uc003xmd.1_Intron|TACC1_uc010lwo.1_Intron|TACC1_uc003xmf.3_Intron|TACC1_uc011lca.1_Missense_Mutation_p.S208P|TACC1_uc011lcb.1_Missense_Mutation_p.S13P|TACC1_uc011lcc.1_Missense_Mutation_p.S13P|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Missense_Mutation_p.S13P|TACC1_uc010lwq.2_Missense_Mutation_p.S13P	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	208	Interaction with YEATS4.|Interaction with TDRD7.				cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			CCTCGAGGCCTCCGCAGAAGC	0.597													7	32					0	0	0.00198382	0	0
ADAM9	8754	broad.mit.edu	37	8	38899577	38899577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:38899577C>T	uc003xmr.2	+	12	1321	c.1243C>T	c.(1243-1245)CCC>TCC	p.P415S	ADAM9_uc011lcf.1_RNA|ADAM9_uc011lcg.1_RNA|ADAM9_uc010lwr.2_RNA	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1	415	Extracellular (Potential).|Disintegrin.				activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			CTATAGTGCTCCCTCCTGTGG	0.418													20	105					0	0	0.00278032	0	0
ADAM32	203102	broad.mit.edu	37	8	39044437	39044437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:39044437G>A	uc003xmt.3	+	11	1170	c.925G>A	c.(925-927)GAG>AAG	p.E309K	ADAM32_uc011lch.1_Intron|ADAM32_uc003xmu.3_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	309	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			GTACCCCAAGGAGATAACTCT	0.318													24	83					0	0	0.00106085	0	0
ADAM18	8749	broad.mit.edu	37	8	39468047	39468047	+	Splice_Site	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:39468047G>A	uc003xni.2	+	6	345	c.345_splice	c.e6-1	p.R115_splice	ADAM18_uc003xnh.2_Splice_Site_p.R115_splice|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Splice_Site_p.R115_splice	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18						cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TAAATTTTCAGGGGATTTCTC	0.274													10	48					0	0	0.000442599	0	0
ADAM18	8749	broad.mit.edu	37	8	39525535	39525535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:39525535C>T	uc003xni.2	+	14	1345	c.1345C>T	c.(1345-1347)CCA>TCA	p.P449S	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.P425S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	449	Disintegrin.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AGCAGGCACTCCATGTAGAAA	0.343													8	71					0	0	0.000274275	0	0
ADAM18	8749	broad.mit.edu	37	8	39535044	39535044	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:39535044T>G	uc003xni.2	+	15	1620	c.1620T>G	c.(1618-1620)CCT>CCG	p.P540P	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.P516P	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	540	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AACCATTACCTTGTGAACGGA	0.308													8	25					0	0	0.00307968	0	0
ZMAT4	79698	broad.mit.edu	37	8	40554838	40554838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:40554838G>A	uc003xnr.2	-	4	421	c.275C>T	c.(274-276)TCC>TTC	p.S92F	ZMAT4_uc003xns.2_Missense_Mutation_p.S92F	NM_024645	NP_078921	Q9H898	ZMAT4_HUMAN	zinc finger, matrin type 4 isoform a	92	Matrin-type 2.					nucleus	DNA binding|zinc ion binding			pancreas(1)|central_nervous_system(1)|skin(1)	3	Ovarian(28;0.00724)|Colorectal(14;0.0468)	all_cancers(7;0.00936)|all_epithelial(6;3.53e-06)|all_lung(54;0.0318)|Lung NSC(58;0.0919)|Esophageal squamous(32;0.15)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;0.00722)			TTGATAATGGGAATCGGCCAC	0.502													7	57					0	0	0.00307968	0	0
MYST3	7994	broad.mit.edu	37	8	41906403	41906403	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:41906403C>T	uc010lxb.2	-	3	637	c.93G>A	c.(91-93)AGG>AGA	p.R31R	MYST3_uc010lxc.2_Silent_p.R31R|MYST3_uc003xon.3_Silent_p.R31R|MYST3_uc010lxd.2_Silent_p.R31R	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	31	Required for activation of RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CATTGCATATCCTTTCTTCTG	0.393													123	119					0	0	0.00361006	0	0
VDAC3	7419	broad.mit.edu	37	8	42260888	42260888	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:42260888C>G	uc011lct.1	+	8	754	c.611C>G	c.(610-612)ACA>AGA	p.T204R	VDAC3_uc003xpc.2_Missense_Mutation_p.T205R	NM_005662	NP_005653	Q9Y277	VDAC3_HUMAN	voltage-dependent anion channel 3 isoform b	204	Beta stranded; (By similarity).				adenine transport	mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			upper_aerodigestive_tract(1)	1	all_cancers(6;3.86e-23)|all_lung(13;6.47e-12)|Lung NSC(13;1.08e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;3.48e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00266)|Lung(22;0.00849)|LUSC - Lung squamous cell carcinoma(45;0.024)		Dihydroxyaluminium(DB01375)	AAGATTGAAACATCCATAAAC	0.398													5	112					0	0	0.00116845	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587062	42587062	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:42587062G>A	uc003xpi.1	+	5	740	c.612G>A	c.(610-612)CTG>CTA	p.L204L		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	204	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GGGAAATACTGAACGCAAAGG	0.458													16	87					0	0	0.00152264	0	0
PRKDC	5591	broad.mit.edu	37	8	48794039	48794039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:48794039G>A	uc003xqi.2	-	39	5062	c.5005C>T	c.(5005-5007)CCT>TCT	p.P1669S	PRKDC_uc003xqj.2_Missense_Mutation_p.P1669S|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1669					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				AAGACTTCAGGGAATGAACCA	0.294								NHEJ					25	47					0	0	0.001512	0	0
EFCAB1	79645	broad.mit.edu	37	8	49643123	49643123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:49643123C>T	uc003xqo.2	-	3	455	c.295G>A	c.(295-297)GGA>AGA	p.G99R	EFCAB1_uc003xqn.3_Intron|EFCAB1_uc011ldj.1_Missense_Mutation_p.G47R|EFCAB1_uc010lxx.2_RNA|EFCAB1_uc011ldk.1_RNA	NM_024593	NP_078869	Q9HAE3	EFCB1_HUMAN	EF-hand calcium binding domain 1 isoform a	99	EF-hand 1.						calcium ion binding				0		all_epithelial(80;0.0134)|Lung NSC(129;0.0207)|all_lung(136;0.0464)				TCCAAAGATCCTCGAAGAAAC	0.338													7	54					0	0	0.000673444	0	0
SNAI2	6591	broad.mit.edu	37	8	49831547	49831547	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:49831547C>G	uc003xqp.2	-	3	790	c.626G>C	c.(625-627)GGG>GCG	p.G209A		NM_003068	NP_003059	O43623	SNAI2_HUMAN	snail 2	209					canonical Wnt receptor signaling pathway|ectoderm and mesoderm interaction|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.G209G(1)		ovary(2)	2		all_cancers(86;0.0368)|all_epithelial(80;0.000624)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				AGGCTTCTCCCCTGGGGGTGG	0.408													3	52					0	0	6.4e-05	0	0
SNTG1	54212	broad.mit.edu	37	8	51449329	51449329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:51449329C>T	uc010lxy.1	+	12	1012	c.641C>T	c.(640-642)TCG>TTG	p.S214L	SNTG1_uc003xqs.1_Missense_Mutation_p.S214L|SNTG1_uc010lxz.1_Missense_Mutation_p.S214L|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	214					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				CTACTTCATTCGCGCTTCTCT	0.483													12	78					0	0	0.00244969	0	0
PXDNL	137902	broad.mit.edu	37	8	52320655	52320655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:52320655C>T	uc003xqu.3	-	17	3630	c.3529G>A	c.(3529-3531)GAT>AAT	p.D1177N	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1177					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				ATCTCTGAATCTTTAATTTCA	0.353													25	23					0	0	0.000720815	0	0
PXDNL	137902	broad.mit.edu	37	8	52320835	52320835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:52320835G>A	uc003xqu.3	-	17	3450	c.3349C>T	c.(3349-3351)CTT>TTT	p.L1117F	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1117					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GGACTGAGAAGGTAGGAGGGT	0.582													8	78					0	0	0.000274275	0	0
PCMTD1	115294	broad.mit.edu	37	8	52733157	52733157	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:52733157C>T	uc003xqx.3	-	6	1169	c.828G>A	c.(826-828)AGG>AGA	p.R276R	PCMTD1_uc011ldm.1_Silent_p.R146R|PCMTD1_uc003xqw.3_Silent_p.R276R|PCMTD1_uc011ldn.1_Silent_p.R88R|PCMTD1_uc010lya.2_Silent_p.R200R	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	276						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				TCTTTCTTTTCCTTTTGGGTG	0.368													6	178					0	0	0.00185496	0	0
ST18	9705	broad.mit.edu	37	8	53073993	53073993	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:53073993G>A	uc003xqz.2	-	9	1692	c.1536C>T	c.(1534-1536)TTC>TTT	p.F512F	ST18_uc011ldq.1_Silent_p.F159F|ST18_uc011ldr.1_Silent_p.F477F|ST18_uc011lds.1_Silent_p.F417F|ST18_uc003xra.2_Silent_p.F512F|ST18_uc003xrb.2_Silent_p.F512F	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	512						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GGCGTTTACCGAAAACTTGGG	0.438													14	103					0	0	0.00316338	0	0
ST18	9705	broad.mit.edu	37	8	53084937	53084937	+	Missense_Mutation	SNP	C	T	T	rs147121734	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:53084937C>T	uc003xqz.2	-	5	640	c.484G>A	c.(484-486)GAT>AAT	p.D162N	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.D127N|ST18_uc011lds.1_Missense_Mutation_p.D67N|ST18_uc003xra.2_Missense_Mutation_p.D162N|ST18_uc003xrb.2_Missense_Mutation_p.D162N	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	162						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TCTGCTTCATCGCTCTCTGCT	0.388													20	115					0	0	0.00188189	0	0
OPRK1	4986	broad.mit.edu	37	8	54147445	54147445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:54147445G>A	uc003xrh.1	-	2	859	c.484C>T	c.(484-486)CAC>TAC	p.H162Y	OPRK1_uc003xri.1_Missense_Mutation_p.H162Y|OPRK1_uc010lyc.1_Missense_Mutation_p.H73Y	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	162	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	TTCACGGGGTGGCACACGGCA	0.483													4	24					0	0	0.00024832	0	0
RP1	6101	broad.mit.edu	37	8	55537937	55537937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55537937C>T	uc003xsd.1	+	4	1643	c.1495C>T	c.(1495-1497)CAC>TAC	p.H499Y	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	499					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GTCTGAGTATCACATGTTTAC	0.358													6	62					0	0	0.00116845	0	0
RP1	6101	broad.mit.edu	37	8	55538573	55538573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55538573G>A	uc003xsd.1	+	4	2279	c.2131G>A	c.(2131-2133)GAA>AAA	p.E711K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	711					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AATTACAAAGGAAATGATAGT	0.353													7	71					0	0	0.00307968	0	0
RP1	6101	broad.mit.edu	37	8	55538799	55538799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55538799G>A	uc003xsd.1	+	4	2505	c.2357G>A	c.(2356-2358)AGC>AAC	p.S786N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	786					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AATAAAATAAGCTTAGGAGCA	0.274													70	123					0	0	0.00361006	0	0
RP1	6101	broad.mit.edu	37	8	55539065	55539065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55539065G>A	uc003xsd.1	+	4	2771	c.2623G>A	c.(2623-2625)GAT>AAT	p.D875N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	875					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACGTAAAGGGGATAAAGTGAA	0.358													18	62					0	0	0.000958276	0	0
RP1	6101	broad.mit.edu	37	8	55539817	55539817	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55539817C>T	uc003xsd.1	+	4	3523	c.3375C>T	c.(3373-3375)TCC>TCT	p.S1125S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1125					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GTAATTCATCCACTAATCTCC	0.418													7	61					0	0	0.00198382	0	0
RP1	6101	broad.mit.edu	37	8	55540397	55540397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55540397G>A	uc003xsd.1	+	4	4103	c.3955G>A	c.(3955-3957)GAG>AAG	p.E1319K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1319					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGCTCAAAAGGAGAACCATAC	0.403													13	114					0	0	0.00316338	0	0
RP1	6101	broad.mit.edu	37	8	55540533	55540533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55540533G>A	uc003xsd.1	+	4	4239	c.4091G>A	c.(4090-4092)AGA>AAA	p.R1364K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1364					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GAGTTAGAAAGAGGTGATGAC	0.328													23	95					0	0	0.00188189	0	0
RP1	6101	broad.mit.edu	37	8	55541384	55541384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55541384C>T	uc003xsd.1	+	4	5090	c.4942C>T	c.(4942-4944)CCT>TCT	p.P1648S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1648					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATCTTTTTTTCCTGGGTCTAC	0.378													20	105					0	0	0.00121646	0	0
RP1	6101	broad.mit.edu	37	8	55541395	55541395	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55541395C>T	uc003xsd.1	+	4	5101	c.4953C>T	c.(4951-4953)ACC>ACT	p.T1651T	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1651					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTGGGTCTACCCGCAAATCTC	0.378													22	115					0	0	0.00188189	0	0
RP1	6101	broad.mit.edu	37	8	55542526	55542526	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:55542526G>A	uc003xsd.1	+	4	6232	c.6084G>A	c.(6082-6084)TTG>TTA	p.L2028L	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2028					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AACCAGATTTGAAGGAAAGGT	0.338													11	116					0	0	0.00185496	0	0
XKR4	114786	broad.mit.edu	37	8	56436505	56436505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:56436505G>A	uc003xsf.2	+	3	1704	c.1672G>A	c.(1672-1674)GAC>AAC	p.D558N		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	558						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TGTTGTCAGCGACCGCGATCA	0.587													9	43					0	0	0.000978159	0	0
SDR16C5	195814	broad.mit.edu	37	8	57214089	57214090	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:57214089_57214090CC>AA	uc003xsy.1	-	7	1517_1518	c.879_880GG>TT	c.(877-882)TTGGGC>TTTTGC	p.293_294LG>FC	SDR16C5_uc010lyk.1_3'UTR|SDR16C5_uc010lyl.1_Missense_Mutation_p.249_250LG>FC	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	293_294					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGAAGGATGCCCAAATAGTCAG	0.391													8	208					0	0	6.4e-05	0	0
PENK	5179	broad.mit.edu	37	8	57353980	57353980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:57353980G>A	uc003xsz.2	-	2	736	c.655C>T	c.(655-657)CGC>TGC	p.R219C	PENK_uc003xta.3_Missense_Mutation_p.R219C	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	219					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CACTCTGGGCGACCTACTCTT	0.532													34	63					0	0	0.00170553	0	0
CYP7A1	1581	broad.mit.edu	37	8	59404192	59404192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:59404192C>T	uc003xtm.3	-	6	1420	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	453					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				TGCTTGATTTCGTGGATAGCG	0.413									Neonatal_Giant_Cell_Hepatitis				28	131					0	0	0.00375469	0	0
RAB2A	5862	broad.mit.edu	37	8	61496781	61496781	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:61496781C>T	uc003xud.1	+	4	409	c.201C>T	c.(199-201)TCC>TCT	p.S67S	RAB2A_uc011lef.1_Silent_p.S43S	NM_002865	NP_002856	P61019	RAB2A_HUMAN	RAB2A, member RAS oncogene family	67					ER to Golgi vesicle-mediated transport|protein transport|small GTPase mediated signal transduction	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|melanosome	GDP binding|GTP binding|GTPase activity				0			BRCA - Breast invasive adenocarcinoma(89;0.0805)			GGCAAGAATCCTTTCGTTCCA	0.378													25	202					0	0	0.00209593	0	0
CLVS1	157807	broad.mit.edu	37	8	62289182	62289182	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:62289182C>T	uc003xuh.2	+	3	798	c.474C>T	c.(472-474)ATC>ATT	p.I158I	CLVS1_uc003xug.2_Missense_Mutation_p.S157F|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Silent_p.I158I	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	158	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						TCACAGACATCCTTCGTGCCA	0.468													9	87					0	0	0.000673444	0	0
TTPA	7274	broad.mit.edu	37	8	63976871	63976871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:63976871G>A	uc003xux.1	-	4	589	c.557C>T	c.(556-558)TCA>TTA	p.S186L		NM_000370	NP_000361	P49638	TTPA_HUMAN	tocopherol (alpha) transfer protein	186	CRAL-TRIO.				lipid metabolic process		transporter activity|vitamin E binding				0	Breast(64;0.0716)	all_cancers(86;0.145)|Lung NSC(129;0.0324)|all_lung(136;0.0593)|all_epithelial(80;0.123)			Vitamin E(DB00163)	CAATGGAAATGAATCCTTTTG	0.299													7	72					0	0	0.00198382	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66963832	66963832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:66963832G>A	uc003xvs.1	+	3	341	c.50G>A	c.(49-51)GGA>GAA	p.G17E	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	17					protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			TCAACAACAGGAGAAGCTCTA	0.403													22	75					0	0	0.00278032	0	0
TRIM55	84675	broad.mit.edu	37	8	67062683	67062683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:67062683G>A	uc003xvv.2	+	7	1193	c.967G>A	c.(967-969)GAA>AAA	p.E323K	TRIM55_uc003xvu.2_Missense_Mutation_p.E323K|TRIM55_uc003xvw.2_Missense_Mutation_p.E323K|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	323	COS.					cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			GATAATACGTGAAATTGACTT	0.423													17	63					0	0	0.000958276	0	0
ADHFE1	137872	broad.mit.edu	37	8	67357609	67357610	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:67357609_67357610GG>TT	uc003xwb.3	+	6	544_545	c.510_511GG>TT	c.(508-513)AAGGGA>AATTGA	p.170_171KG>N*	ADHFE1_uc003xwd.3_RNA|ADHFE1_uc003xwc.3_Nonsense_Mutation_p.122_123KG>N*|ADHFE1_uc003xwe.3_RNA|ADHFE1_uc003xwf.3_Intron|ADHFE1_uc011les.1_Nonsense_Mutation_p.100_101KG>N*|ADHFE1_uc011leq.1_Intron|ADHFE1_uc011ler.1_Intron	NM_144650	NP_653251	Q8IWW8	HOT_HUMAN	alcohol dehydrogenase, iron containing, 1	170_171					2-oxoglutarate metabolic process|molecular hydrogen transport	mitochondrial matrix	hydroxyacid-oxoacid transhydrogenase activity|metal ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4		Lung NSC(129;0.197)	Epithelial(68;0.0321)|all cancers(69;0.0751)|BRCA - Breast invasive adenocarcinoma(89;0.0855)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			CCATTGGCAAGGGAAAGCCTGT	0.436													12	244					0	0	6.4e-05	0	0
COPS5	10987	broad.mit.edu	37	8	67969657	67969657	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:67969657G>A	uc003xxe.2	-	4	862	c.531C>T	c.(529-531)TCC>TCT	p.S177S	COPS5_uc003xxd.2_Silent_p.S113S|COPS5_uc003xxf.2_Silent_p.S222S|COPS5_uc010lyu.1_RNA|COPS5_uc010lyv.1_Silent_p.S177S	NM_006837	NP_006828	Q92905	CSN5_HUMAN	COP9 signalosome subunit 5	177					cullin deneddylation|transcription from RNA polymerase II promoter	eukaryotic translation initiation factor 3 complex|signalosome	metal ion binding|metallopeptidase activity|protein binding|transcription coactivator activity|translation initiation factor activity			ovary(1)|skin(1)	2	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00389)|OV - Ovarian serous cystadenocarcinoma(28;0.00691)|all cancers(69;0.0205)|BRCA - Breast invasive adenocarcinoma(89;0.153)			CTTTCCCTGCGGATATTGTTC	0.239													64	179					0	0	0.00361006	0	0
CSPP1	79848	broad.mit.edu	37	8	68007618	68007618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:68007618C>T	uc003xxi.2	+	8	737	c.706C>T	c.(706-708)CCT>TCT	p.P236S	CSPP1_uc003xxg.1_Missense_Mutation_p.P228S|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Missense_Mutation_p.P201S|CSPP1_uc003xxk.2_5'UTR	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	236						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			TTCAGAGGGTCCTAGAAAAGA	0.388													15	138					0	0	0.000566183	0	0
PREX2	80243	broad.mit.edu	37	8	68939498	68939498	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:68939498C>T	uc003xxv.1	+	5	510	c.483C>T	c.(481-483)CCC>CCT	p.P161P	PREX2_uc003xxu.1_Silent_p.P161P|PREX2_uc011lez.1_Silent_p.P96P	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	161	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CAGATGTTCCCTTGGAAGGAT	0.353													6	59					0	0	0.00116845	0	0
PREX2	80243	broad.mit.edu	37	8	68950452	68950452	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:68950452T>C	uc003xxv.1	+	7	791	c.764T>C	c.(763-765)ATT>ACT	p.I255T	PREX2_uc003xxu.1_Missense_Mutation_p.I255T|PREX2_uc011lez.1_Missense_Mutation_p.I190T	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	255	PH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTACTGAAAATTTCTTCTGGA	0.388													10	32					0	0	0.000442599	0	0
PREX2	80243	broad.mit.edu	37	8	68972989	68972989	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:68972989A>G	uc003xxv.1	+	11	1341	c.1314A>G	c.(1312-1314)TTA>TTG	p.L438L	PREX2_uc003xxu.1_Silent_p.L438L|PREX2_uc011lez.1_Silent_p.L373L	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	438	DEP 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GACAAGCATTATTAGAAAATG	0.353													26	89					0	0	0.00106085	0	0
SULF1	23213	broad.mit.edu	37	8	70498601	70498601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:70498601G>A	uc010lza.1	+	7	1139	c.422G>A	c.(421-423)GGA>GAA	p.G141E	SULF1_uc003xyd.2_Missense_Mutation_p.G141E|SULF1_uc003xye.2_Missense_Mutation_p.G141E|SULF1_uc003xyf.2_Missense_Mutation_p.G141E|SULF1_uc003xyg.2_Missense_Mutation_p.G141E	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	141					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GCCTTTTTTGGAAAATACCTC	0.328													6	77					0	0	0.00116845	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70617364	70617364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:70617364C>T	uc003xyl.2	-	6	2231	c.1524G>A	c.(1522-1524)ATG>ATA	p.M508I	SLCO5A1_uc010lzb.2_Missense_Mutation_p.M453I|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Missense_Mutation_p.M508I|SLCO5A1_uc010lzc.2_Missense_Mutation_p.M453I	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	508	Helical; Name=9; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			CACTGCAGATCATTGCTAGTT	0.403													11	71					0	0	0.00136819	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70617386	70617386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:70617386C>T	uc003xyl.2	-	6	2209	c.1502G>A	c.(1501-1503)AGA>AAA	p.R501K	SLCO5A1_uc010lzb.2_Missense_Mutation_p.R446K|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Missense_Mutation_p.R501K|SLCO5A1_uc010lzc.2_Missense_Mutation_p.R446K	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	501	Helical; Name=9; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			TGCAGATTCTCTGGCACCAAG	0.423													13	76					0	0	0.00316338	0	0
PRDM14	63978	broad.mit.edu	37	8	70981484	70981484	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:70981484G>A	uc003xym.2	-	2	814	c.612C>T	c.(610-612)TTC>TTT	p.F204F		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			CGTACAGAACGAAGTGCAGGT	0.602													31	35					0	0	0.00283554	0	0
NCOA2	10499	broad.mit.edu	37	8	71039182	71039182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:71039182C>T	uc003xyn.1	-	19	3944	c.3782G>A	c.(3781-3783)CGA>CAA	p.R1261Q	NCOA2_uc011lfb.1_Missense_Mutation_p.R349Q	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1261					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			CATCAAAGTTCGTTGCTGAAC	0.498			T	RUNXBP2	AML								6	31					0	0	0.00198382	0	0
EYA1	2138	broad.mit.edu	37	8	72246358	72246358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:72246358C>T	uc003xys.3	-	3	463	c.176G>A	c.(175-177)GGG>GAG	p.G59E	EYA1_uc003xyr.3_Missense_Mutation_p.G59E|EYA1_uc003xyt.3_Missense_Mutation_p.G26E|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.G59E|EYA1_uc011lfe.1_Missense_Mutation_p.G59E|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	59					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GTTTAAAGACCCGTCGGCTGT	0.333													17	59					0	0	0.00121646	0	0
KCNB2	9312	broad.mit.edu	37	8	73848351	73848351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:73848351C>T	uc003xzb.2	+	3	1349	c.761C>T	c.(760-762)TCC>TTC	p.S254F		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	254	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CGATTCTTATCCTCACCAAAT	0.448													17	94					0	0	0.000422831	0	0
KCNB2	9312	broad.mit.edu	37	8	73848772	73848772	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:73848772G>A	uc003xzb.2	+	3	1770	c.1182G>A	c.(1180-1182)GGG>GGA	p.G394G		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	394					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CATTACTAGGGAAAATTGTGG	0.438													34	64					0	0	0.00128727	0	0
KCNB2	9312	broad.mit.edu	37	8	73848829	73848829	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:73848829C>T	uc003xzb.2	+	3	1827	c.1239C>T	c.(1237-1239)ATC>ATT	p.I413I		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	413	Helical; Name=Segment S6; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CCCTTCCTATCCCAATTATTG	0.443													5	62					0	0	0.000602214	0	0
TCEB1	6921	broad.mit.edu	37	8	74859020	74859020	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:74859020A>T	uc003xzx.1	-	4	269	c.184T>A	c.(184-186)TTT>ATT	p.F62I	TCEB1_uc003xzy.1_Missense_Mutation_p.F62I|TCEB1_uc003xzz.1_Missense_Mutation_p.F46I|TCEB1_uc003yaa.1_Missense_Mutation_p.F62I	NM_005648	NP_005639	Q15369	ELOC_HUMAN	elongin C	62					interspecies interaction between organisms|positive regulation of viral transcription|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|ubiquitin-dependent protein catabolic process|viral reproduction	cytosol|nucleoplasm	protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0136)|all cancers(69;0.0431)|BRCA - Breast invasive adenocarcinoma(89;0.0499)			ATCTCTCTAAAATTGACCTCA	0.303													15	94					0	0	0.000422831	0	0
GDAP1	54332	broad.mit.edu	37	8	75263638	75263639	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:75263638_75263639GG>TC	uc003yah.2	+	2	326_327	c.247_248GG>TC	c.(247-249)GGG>TCG	p.G83S	GDAP1_uc011lfj.1_Intron|GDAP1_uc003yai.2_Missense_Mutation_p.G15S	NM_018972	NP_061845	Q8TB36	GDAP1_HUMAN	ganglioside-induced differentiation-associated	83	GST N-terminal.					cytoplasm					0	Breast(64;0.00769)	Myeloproliferative disorder(644;0.0122)	BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.104)|all cancers(69;0.234)			CCTTATCCACGGGGAAAACATA	0.431													7	233					0	0	6.4e-05	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616520	77616520	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:77616520T>C	uc003yav.2	+	2	584	c.197T>C	c.(196-198)GTT>GCT	p.V66A	ZFHX4_uc003yat.1_Missense_Mutation_p.V66A|ZFHX4_uc003yau.1_Missense_Mutation_p.V66A|ZFHX4_uc003yaw.1_Missense_Mutation_p.V66A	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	66						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGTTTCAGCGTTGAGAATGCA	0.493										HNSCC(33;0.089)			20	72					0	0	0.00152264	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616914	77616914	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:77616914C>T	uc003yav.2	+	2	978	c.591C>T	c.(589-591)ATC>ATT	p.I197I	ZFHX4_uc003yat.1_Silent_p.I197I|ZFHX4_uc003yau.1_Silent_p.I197I|ZFHX4_uc003yaw.1_Silent_p.I197I	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	197						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTTTTCATATCGCTTCATCCC	0.493										HNSCC(33;0.089)			5	33					0	0	0.00116845	0	0
ZFHX4	79776	broad.mit.edu	37	8	77763658	77763658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:77763658C>T	uc003yav.2	+	10	4753	c.4366C>T	c.(4366-4368)CCT>TCT	p.P1456S	ZFHX4_uc003yau.1_Missense_Mutation_p.P1501S|ZFHX4_uc003yaw.1_Missense_Mutation_p.P1456S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1456						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GAAAGCAAGTCCTGTAGGAAG	0.473										HNSCC(33;0.089)			16	28					0	0	0.000566183	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764369	77764369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:77764369C>T	uc003yav.2	+	10	5464	c.5077C>T	c.(5077-5079)CTC>TTC	p.L1693F	ZFHX4_uc003yau.1_Missense_Mutation_p.L1738F|ZFHX4_uc003yaw.1_Missense_Mutation_p.L1693F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1693	Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCCTCAGTTTCTCTTTCCATT	0.512										HNSCC(33;0.089)			31	26					0	0	0.000814825	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767954	77767954	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:77767954C>T	uc003yav.2	+	10	9049	c.8662C>T	c.(8662-8664)CGA>TGA	p.R2888*	ZFHX4_uc003yau.1_Nonsense_Mutation_p.R2933*|ZFHX4_uc003yaw.1_Nonsense_Mutation_p.R2888*	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2888	Homeobox 4.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAAGCGTTTTCGAACGCAAAT	0.468										HNSCC(33;0.089)			9	48					0	0	0.000274275	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768515	77768515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:77768515G>A	uc003yav.2	+	10	9610	c.9223G>A	c.(9223-9225)GGA>AGA	p.G3075R	ZFHX4_uc003yau.1_Missense_Mutation_p.G3120R|ZFHX4_uc003yaw.1_Missense_Mutation_p.G3075R	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3075	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTCCTTGCCGGGATTTCCACA	0.512										HNSCC(33;0.089)			13	18					0	0	0.00136819	0	0
ZFHX4	79776	broad.mit.edu	37	8	77776234	77776234	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:77776234C>T	uc003yav.2	+	11	10536	c.10149C>T	c.(10147-10149)TTC>TTT	p.F3383F		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3379						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TCTGTTATTTCGGTCAGCCTT	0.438										HNSCC(33;0.089)			5	21					0	0	0.00116845	0	0
IL7	3574	broad.mit.edu	37	8	79650870	79650870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:79650870C>T	uc003ybg.2	-	4	830	c.229G>A	c.(229-231)GAA>AAA	p.E77K	IL7_uc003ybe.2_Intron|IL7_uc011lfm.1_Intron|IL7_uc003ybh.2_RNA|IL7_uc003ybi.3_RNA	NM_000880	NP_000871	P13232	IL7_HUMAN	interleukin 7 precursor	77					bone resorption|cell-cell signaling|humoral immune response|organ morphogenesis|positive regulation of B cell proliferation|positive regulation of T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-7 receptor binding				0						AACATACCTTCCTATTATAGG	0.353													11	80					0	0	0.00136819	0	0
TPD52	7163	broad.mit.edu	37	8	80965594	80965594	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:80965594C>T	uc003ybr.1	-	3	649	c.327G>A	c.(325-327)CGG>CGA	p.R109R	TPD52_uc010lzr.2_RNA|TPD52_uc010lzs.1_RNA|TPD52_uc003ybs.1_Silent_p.R69R|TPD52_uc003ybt.1_Silent_p.R69R|TPD52_uc003ybq.1_RNA|TPD52_uc003ybu.1_RNA	NM_001025252	NP_001020423	P55327	TPD52_HUMAN	tumor protein D52 isoform 1	109	Potential.				anatomical structure morphogenesis|B cell differentiation|secretion	endoplasmic reticulum|perinuclear region of cytoplasm	calcium ion binding|protein heterodimerization activity|protein homodimerization activity			ovary(1)	1	all_epithelial(4;1.13e-09)|Lung NSC(7;9.71e-07)|all_lung(9;3.75e-06)	Lung NSC(129;3.55e-06)|all_lung(136;1.53e-05)|Acute lymphoblastic leukemia(644;0.158)	BRCA - Breast invasive adenocarcinoma(6;0.00181)|Epithelial(68;0.0149)|all cancers(69;0.0612)			TTCCAAGTTTCCGCTTGATCT	0.428													12	77					0	0	0.00136819	0	0
FABP4	2167	broad.mit.edu	37	8	82392784	82392784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:82392784C>T	uc003ycd.2	-	2	194	c.123G>A	c.(121-123)ATG>ATA	p.M41I		NM_001442	NP_001433	P15090	FABP4_HUMAN	fatty acid binding protein 4, adipocyte	41					triglyceride catabolic process	cytoplasm|nucleus|soluble fraction	fatty acid binding|protein binding|transporter activity			breast(1)	1			Epithelial(68;0.213)			CACTGATGATCATGTTAGGTT	0.413													9	39					0	0	0.000978159	0	0
FABP12	646486	broad.mit.edu	37	8	82439285	82439285	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:82439285C>T	uc011lfp.1	-	3	318	c.318G>A	c.(316-318)ACG>ACA	p.T106T	FABP12_uc003ycg.3_RNA	NM_001105281	NP_001098751	A6NFH5	FBP12_HUMAN	fatty acid binding protein 12	106							lipid binding|transporter activity				0						CCAGCTTTCTCGTTATGGTGG	0.413													10	44					0	0	0.00136819	0	0
FABP12	646486	broad.mit.edu	37	8	82441702	82441702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:82441702C>T	uc011lfp.1	-	2	217	c.217G>A	c.(217-219)GAA>AAA	p.E73K	FABP12_uc003ycg.3_RNA	NM_001105281	NP_001098751	A6NFH5	FBP12_HUMAN	fatty acid binding protein 12	73							lipid binding|transporter activity				0						GGCGTGATTTCCTCAAACTCT	0.403													26	237					0	0	0.00283554	0	0
SLC10A5	347051	broad.mit.edu	37	8	82606756	82606756	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:82606756A>G	uc011lfs.1	-	1	452	c.452T>C	c.(451-453)ATA>ACA	p.I151T		NM_001010893	NP_001010893	Q5PT55	NTCP5_HUMAN	solute carrier family 10 (sodium/bile acid	151	Helical; (Potential).					integral to membrane	bile acid:sodium symporter activity				0						ATTCAATAGTATTAGTGGTAA	0.358													29	82					0	0	0.00127121	0	0
SNX16	64089	broad.mit.edu	37	8	82751866	82751866	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:82751866T>C	uc011lft.1	-	3	863	c.356A>G	c.(355-357)GAA>GGA	p.E119G	SNX16_uc003ycn.2_Missense_Mutation_p.E119G|SNX16_uc003yco.2_Missense_Mutation_p.E119G	NM_022133	NP_071416	P57768	SNX16_HUMAN	sorting nexin 16 isoform a	119	PX.				cell communication|early endosome to late endosome transport|endosome to lysosome transport|protein targeting to lysosome	early endosome membrane|extrinsic to endosome membrane|late endosome membrane|lysosome	identical protein binding|phosphatidylinositol binding			ovary(1)|pancreas(1)	2						AGCTCTTTCTTCCATCACTTC	0.358													31	189					0	0	0.00111076	0	0
RALYL	138046	broad.mit.edu	37	8	85686847	85686847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:85686847G>A	uc003ycq.3	+	4	706	c.290G>A	c.(289-291)AGA>AAA	p.R97K	RALYL_uc003ycr.3_Missense_Mutation_p.R97K|RALYL_uc003ycs.3_Missense_Mutation_p.R97K|RALYL_uc010lzy.2_Missense_Mutation_p.R97K|RALYL_uc003yct.3_Missense_Mutation_p.R110K|RALYL_uc003ycu.3_Missense_Mutation_p.R24K|RALYL_uc003ycv.3_Missense_Mutation_p.R9K	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	97							identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						AAACCATACAGACCAAAACCT	0.353													9	13					0	0	0.000673444	0	0
PSKH2	85481	broad.mit.edu	37	8	87076279	87076279	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:87076279A>G	uc011lfy.1	-	2	767	c.767T>C	c.(766-768)CTT>CCT	p.L256P		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	256	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			GAATCCGCTAAGTAAAGCATA	0.438													10	79					0	0	0.000673444	0	0
SLC7A13	157724	broad.mit.edu	37	8	87229936	87229936	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:87229936T>C	uc003ydq.1	-	3	1040	c.942A>G	c.(940-942)ATA>ATG	p.I314M	SLC7A13_uc003ydr.1_Missense_Mutation_p.I305M	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	314	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						TTGCAAGATATATTGGTCTCG	0.378													43	151					0	0	0.00361006	0	0
CPNE3	8895	broad.mit.edu	37	8	87557023	87557023	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:87557023A>G	uc003ydv.2	+	9	851	c.689A>G	c.(688-690)CAG>CGG	p.Q230R	CPNE3_uc003ydw.1_5'Flank	NM_003909	NP_003900	O75131	CPNE3_HUMAN	copine III	230	C2 2.				lipid metabolic process|vesicle-mediated transport	cytosol	calcium-dependent phospholipid binding|protein serine/threonine kinase activity|transporter activity			ovary(1)|skin(1)	2						GGAACATTTCAGACCACCATG	0.299													72	158					0	0	0.00361006	0	0
CNGB3	54714	broad.mit.edu	37	8	87590964	87590964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:87590964C>T	uc003ydx.2	-	17	2102	c.2056G>A	c.(2056-2058)GCA>ACA	p.A686T	CNGB3_uc010maj.2_Missense_Mutation_p.A543T	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	686	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GCAAGACTTGCTTTTCCTGTG	0.493													14	120					0	0	0.000566183	0	0
MMP16	4325	broad.mit.edu	37	8	89053923	89053923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:89053923C>T	uc003yeb.3	-	10	1872	c.1590G>A	c.(1588-1590)ATG>ATA	p.M530I		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	530	Hemopexin-like 4.|Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						CATCACAGCCCATAAAATCCT	0.428													8	41					0	0	0.00307968	0	0
MMP16	4325	broad.mit.edu	37	8	89054002	89054002	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:89054002C>G	uc003yeb.3	-	10	1793	c.1511G>C	c.(1510-1512)GGA>GCA	p.G504A		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	504	Hemopexin-like 4.|Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						ATACTCCTTTCCTTTGTAGAA	0.393													9	16					0	0	0.000673444	0	0
MMP16	4325	broad.mit.edu	37	8	89086840	89086840	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:89086840G>A	uc003yeb.3	-	7	1497	c.1215C>T	c.(1213-1215)TTC>TTT	p.F405F	MMP16_uc003yec.2_Silent_p.F405F	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	405	Hemopexin-like 2.|Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TACCTTTAAAGAACACAAAAT	0.393													5	45					0	0	0.00198382	0	0
RUNX1T1	862	broad.mit.edu	37	8	92988143	92988143	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:92988143C>T	uc003yfd.2	-	9	1422	c.1338G>A	c.(1336-1338)TGG>TGA	p.W446*	RUNX1T1_uc003yfc.1_Nonsense_Mutation_p.W419*|RUNX1T1_uc003yfe.1_Nonsense_Mutation_p.W409*|RUNX1T1_uc010mao.2_Nonsense_Mutation_p.W419*|RUNX1T1_uc011lgi.1_Nonsense_Mutation_p.W457*|RUNX1T1_uc010man.1_Nonsense_Mutation_p.W71*|RUNX1T1_uc003yfb.1_Nonsense_Mutation_p.W409*	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	446					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			CAGCTTTCTTCCAGATCTCCT	0.473													15	152					0	0	0.000566183	0	0
GEM	2669	broad.mit.edu	37	8	95265325	95265325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:95265325C>T	uc003ygj.2	-	3	596	c.347G>A	c.(346-348)CGA>CAA	p.R116Q	GEM_uc003ygi.2_Missense_Mutation_p.R116Q	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	116					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			CATCAGGGTTCGTTCATATGT	0.413													10	79					0	0	0.00244969	0	0
INTS8	55656	broad.mit.edu	37	8	95839949	95839950	+	Splice_Site	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:95839949_95839950GG>TT	uc003yhb.2	+	4	573	c.447_splice	c.e4-1	p.W149_splice	INTS8_uc003yha.1_Splice_Site_p.W149_splice|INTS8_uc011lgq.1_Splice_Site|INTS8_uc011lgr.1_Splice_Site|INTS8_uc010mba.2_5'Flank	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8						snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					CTTTTCTTCAGGGCAATTAGGA	0.347													19	763					0	0	6.4e-05	0	0
INTS8	55656	broad.mit.edu	37	8	95871818	95871819	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:95871818_95871819CC>AA	uc003yhb.2	+	16	2160_2161	c.2034_2035CC>AA	c.(2032-2037)CTCCAA>CTAAAA	p.Q679K	INTS8_uc003yha.1_Missense_Mutation_p.Q679K|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.Q506K	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	679					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					ACCTTACACTCCAAGTTCCTGC	0.312													18	737					0	0	6.4e-05	0	0
CCNE2	9134	broad.mit.edu	37	8	95905108	95905109	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:95905108_95905109GG>TT	uc003yhc.2	-	5	363_364	c.254_255CC>AA	c.(253-255)TCC>TAA	p.S85*	C8orf38_uc003yhe.1_5'Flank|C8orf38_uc003yhf.2_5'Flank|CCNE2_uc003yhd.2_Nonsense_Mutation_p.S85*	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	85					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TTGTAAATCTGGAGAAATCACT	0.302													17	816					0	0	6.4e-05	0	0
TP53INP1	94241	broad.mit.edu	37	8	95952372	95952372	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:95952372A>G	uc003yhg.2	-	3	573	c.189T>C	c.(187-189)CCT>CCC	p.P63P	C8orf38_uc003yhe.1_Intron|C8orf38_uc003yhf.2_Intron|TP53INP1_uc003yhh.2_Silent_p.P63P	NM_033285	NP_150601	Q96A56	T53I1_HUMAN	tumor protein p53 inducible nuclear protein 1	63					apoptosis	PML body					0	Breast(36;8.75e-07)					AAAAGACTGAAGGGTGCTCAG	0.468													39	336					0	0	0.00321405	0	0
C8orf38	137682	broad.mit.edu	37	8	96059336	96059337	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:96059336_96059337CC>AA	uc003yhj.2	+	6	711_712	c.695_696CC>AA	c.(694-696)CCC>CAA	p.P232Q	C8orf38_uc003yhe.1_RNA|C8orf38_uc003yhf.2_Missense_Mutation_p.P140Q|C8orf38_uc011lgs.1_RNA|C8orf38_uc003yhi.2_Missense_Mutation_p.P180Q|C8orf38_uc003yhk.2_RNA|C8orf38_uc003yhl.2_Missense_Mutation_p.P140Q	NM_152416	NP_689629	Q330K2	CH038_HUMAN	hypothetical protein LOC137682 precursor	232					biosynthetic process	mitochondrion	transferase activity				0	Breast(36;3.32e-06)					GTGTTCCTTCCCATGGATATTT	0.401													14	468					0	0	6.4e-05	0	0
MTERFD1	51001	broad.mit.edu	37	8	97258150	97258150	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:97258150G>A	uc003yhs.1	-	6	913	c.835C>T	c.(835-837)CTG>TTG	p.L279L	MTERFD1_uc003yhr.1_Silent_p.L158L|MTERFD1_uc010mbd.1_Silent_p.L279L	NM_015942	NP_057026	Q96E29	MTER1_HUMAN	MTERF domain containing 1 precursor	279					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion	transcription regulatory region DNA binding			ovary(1)	1	Breast(36;5.16e-05)					CGAACTACCAGATCTCTAGTC	0.358													46	60					0	0	0.00361006	0	0
MTERFD1	51001	broad.mit.edu	37	8	97258152	97258152	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:97258152T>A	uc003yhs.1	-	6	911	c.833A>T	c.(832-834)GAT>GTT	p.D278V	MTERFD1_uc003yhr.1_Missense_Mutation_p.D157V|MTERFD1_uc010mbd.1_Missense_Mutation_p.D278V	NM_015942	NP_057026	Q96E29	MTER1_HUMAN	MTERF domain containing 1 precursor	278					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion	transcription regulatory region DNA binding			ovary(1)	1	Breast(36;5.16e-05)					AACTACCAGATCTCTAGTCTG	0.363													45	60					0	0	0.00361006	0	0
POP1	10940	broad.mit.edu	37	8	99148749	99148749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:99148749G>A	uc003yij.3	+	8	1151	c.1051G>A	c.(1051-1053)GAA>AAA	p.E351K	POP1_uc011lgv.1_Missense_Mutation_p.E351K|POP1_uc003yik.2_Missense_Mutation_p.E351K	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	351					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			CCAGTGTGTGGAACCCATCAA	0.358													19	155					0	0	0.00332997	0	0
KCNS2	3788	broad.mit.edu	37	8	99440421	99440421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:99440421G>A	uc003yin.2	+	2	564	c.214G>A	c.(214-216)GAC>AAC	p.D72N		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	72	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			GTTCTACTTCGACCGCAACCC	0.602													9	66					0	0	0.000442599	0	0
VPS13B	157680	broad.mit.edu	37	8	100844830	100844830	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:100844830G>A	uc003yiv.2	+	52	9750	c.9639G>A	c.(9637-9639)CAG>CAA	p.Q3213Q	VPS13B_uc003yiw.2_Silent_p.Q3188Q	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3213					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTCCCAGACAGAGTGTGGCAG	0.473													7	60					0	0	0.000442599	0	0
ANKRD46	157567	broad.mit.edu	37	8	101540113	101540114	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:101540113_101540114GG>TT	uc003yjm.2	-	4	633_634	c.429_430CC>AA	c.(427-432)ACCCAC>ACAAAC	p.H144N	ANKRD46_uc003yjn.1_Missense_Mutation_p.H144N|ANKRD46_uc003yjo.1_Missense_Mutation_p.H144N|ANKRD46_uc003yjp.1_Missense_Mutation_p.H144N	NM_198401	NP_940683	Q86W74	ANR46_HUMAN	ankyrin repeat domain 46	144						integral to membrane					0	all_cancers(14;5.07e-05)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000353)|all_lung(17;0.000998)		Epithelial(11;2.61e-11)|all cancers(13;5.03e-09)|OV - Ovarian serous cystadenocarcinoma(57;4.49e-06)|STAD - Stomach adenocarcinoma(118;0.0957)			AGTTTCGAGTGGGTTCCTCTGT	0.386													9	165					0	0	6.4e-05	0	0
PABPC1	26986	broad.mit.edu	37	8	101721719	101721719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:101721719G>A	uc003yjs.1	-	8	1717	c.1213C>T	c.(1213-1215)CCT>TCT	p.P405S	PABPC1_uc011lhc.1_Missense_Mutation_p.P373S|PABPC1_uc011lhd.1_Missense_Mutation_p.P360S|PABPC1_uc003yjt.1_Missense_Mutation_p.P402S|PABPC1_uc003yju.2_RNA	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	405					mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			TAACCTGAAGGAGGTGCTGGC	0.478													16	91					0	0	0.00074312	0	0
UBR5	51366	broad.mit.edu	37	8	103291105	103291105	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:103291105G>T	uc003ykr.1	-	44	6270	c.6237C>A	c.(6235-6237)GCC>GCA	p.A2079A	UBR5_uc003yks.1_Silent_p.A2079A	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2079					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TCCCACTACTGGCAGATGAAG	0.353													12	390					0.00316338	0.0087612	0.00316338	1	0
BAALC	79870	broad.mit.edu	37	8	104240216	104240216	+	Splice_Site	SNP	G	A	A	rs117445972	by1000genomes	TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:104240216G>A	uc003yld.2	+	3	533	c.328_splice	c.e3-1	p.A110_splice	BAALC_uc003yle.2_Splice_Site_p.G54_splice|uc003ylf.2_Intron|BAALC_uc003ylg.2_Splice_Site_p.A56_splice|BAALC_uc010mcc.2_Splice_Site	NM_024812	NP_079088	Q8WXS3	BAALC_HUMAN	brain and acute leukemia, cytoplasmic isoform 1							centrosome|membrane|nucleus					0			OV - Ovarian serous cystadenocarcinoma(57;3.49e-05)|STAD - Stomach adenocarcinoma(118;0.133)			CAACTTAACAGGCTAAAAGAG	0.254													11	50					0	0	0.000978159	0	0
RIMS2	9699	broad.mit.edu	37	8	104778598	104778598	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:104778598G>A	uc003ylp.2	+	3	670	c.531G>A	c.(529-531)CAG>CAA	p.Q177Q		NM_001100117	NP_001093587	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	208					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AGGCACCTCAGGAGAAGAAAC	0.453										HNSCC(12;0.0054)			9	42					0	0	0.000978159	0	0
RIMS2	9699	broad.mit.edu	37	8	105261011	105261011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:105261011G>A	uc003yls.2	+	25	3854	c.3613G>A	c.(3613-3615)GGA>AGA	p.G1205R	RIMS2_uc003ylp.2_Missense_Mutation_p.G1187R|RIMS2_uc003ylw.2_Missense_Mutation_p.G1194R|RIMS2_uc003ylq.2_Missense_Mutation_p.G1001R|RIMS2_uc003ylr.2_Missense_Mutation_p.G1026R	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1249					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TCAGCTAGTGGGACGCCAGAC	0.428										HNSCC(12;0.0054)			14	47					0	0	0.000422831	0	0
RIMS2	9699	broad.mit.edu	37	8	105263946	105263946	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:105263946C>T	uc003yls.2	+	28	4243	c.4002C>T	c.(4000-4002)TTC>TTT	p.F1334F	RIMS2_uc003ylp.2_Silent_p.F1316F|RIMS2_uc003ylq.2_Silent_p.F1130F|RIMS2_uc003ylr.2_Silent_p.F1155F	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1378					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TCAAACTTTTCCCACCTTCCT	0.448										HNSCC(12;0.0054)			60	70					0	0	0.00361006	0	0
ABRA	137735	broad.mit.edu	37	8	107782336	107782336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:107782336C>T	uc003ymm.3	-	1	137	c.83G>A	c.(82-84)AGC>AAC	p.S28N		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	28					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			TCGGGCCAAGCTGATGACCAG	0.647													12	52					0	0	0.00136819	0	0
TMEM74	157753	broad.mit.edu	37	8	109797168	109797168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:109797168C>T	uc003ymy.1	-	2	265	c.160G>A	c.(160-162)GAG>AAG	p.E54K	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	54					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			CCTTCCATCTCGGTTGCTCTT	0.537													11	77					0	0	0.00136819	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110460499	110460499	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:110460499C>T	uc003yne.2	+	39	6008	c.5904C>T	c.(5902-5904)ATC>ATT	p.I1968I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1968	Extracellular (Potential).|IPT/TIG 12.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGCAGTGCATCGTGGGAGATC	0.433										HNSCC(38;0.096)			13	42					0	0	0.00185496	0	0
SYBU	55638	broad.mit.edu	37	8	110587583	110587583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:110587583G>A	uc003ynj.3	-	7	1707	c.1544C>T	c.(1543-1545)CCC>CTC	p.P515L	SYBU_uc003yni.3_Missense_Mutation_p.P512L|SYBU_uc003ynk.3_Missense_Mutation_p.P396L|SYBU_uc010mco.2_Missense_Mutation_p.P514L|SYBU_uc003ynl.3_Missense_Mutation_p.P514L|SYBU_uc010mcp.2_Missense_Mutation_p.P515L|SYBU_uc010mcq.2_Missense_Mutation_p.P515L|SYBU_uc003yno.3_Missense_Mutation_p.P396L|SYBU_uc010mcr.2_Missense_Mutation_p.P515L|SYBU_uc003ynm.3_Missense_Mutation_p.P514L|SYBU_uc003ynn.3_Missense_Mutation_p.P514L|SYBU_uc010mcs.2_Missense_Mutation_p.P396L|SYBU_uc010mct.2_Missense_Mutation_p.P515L|SYBU_uc010mcu.2_Missense_Mutation_p.P514L|SYBU_uc003ynp.3_Missense_Mutation_p.P447L|SYBU_uc010mcv.2_Missense_Mutation_p.P515L|SYBU_uc003ynh.3_Missense_Mutation_p.P309L|SYBU_uc011lhw.1_Missense_Mutation_p.P385L	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	515						cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						CAAGCTCGAGGGACAGGGGTC	0.572													15	61					0	0	0.000422831	0	0
CSMD3	114788	broad.mit.edu	37	8	113267574	113267574	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:113267574G>A	uc003ynu.2	-	62	10104	c.9945C>T	c.(9943-9945)TTC>TTT	p.F3315F	CSMD3_uc003yns.2_Silent_p.F2517F|CSMD3_uc003ynt.2_Silent_p.F3275F|CSMD3_uc011lhx.1_Silent_p.F3146F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3315	Extracellular (Potential).|Sushi 26.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AATTGCAGCTGAATGAAACCT	0.408										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			24	25					0	0	0.00278032	0	0
CSMD3	114788	broad.mit.edu	37	8	113276005	113276005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:113276005C>T	uc003ynu.2	-	61	9884	c.9725G>A	c.(9724-9726)GGA>GAA	p.G3242E	CSMD3_uc003yns.2_Missense_Mutation_p.G2444E|CSMD3_uc003ynt.2_Missense_Mutation_p.G3202E|CSMD3_uc011lhx.1_Missense_Mutation_p.G3073E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3242	Sushi 25.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTCCAGCCTTCCATTAGAGAT	0.433										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			5	30					0	0	0.000602214	0	0
CSMD3	114788	broad.mit.edu	37	8	113318415	113318415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:113318415G>A	uc003ynu.2	-	51	8051	c.7892C>T	c.(7891-7893)TCC>TTC	p.S2631F	CSMD3_uc003yns.2_Missense_Mutation_p.S1833F|CSMD3_uc003ynt.2_Missense_Mutation_p.S2591F|CSMD3_uc011lhx.1_Missense_Mutation_p.S2527F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2631	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AATCCCACAGGAAATTGCTAG	0.338										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			6	33					0	0	0.00116845	0	0
CSMD3	114788	broad.mit.edu	37	8	113323251	113323251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:113323251G>A	uc003ynu.2	-	50	8000	c.7841C>T	c.(7840-7842)TCC>TTC	p.S2614F	CSMD3_uc003yns.2_Missense_Mutation_p.S1816F|CSMD3_uc003ynt.2_Missense_Mutation_p.S2574F|CSMD3_uc011lhx.1_Missense_Mutation_p.S2510F|CSMD3_uc003ynw.1_Missense_Mutation_p.S325F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2614	Extracellular (Potential).|Sushi 14.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATACCCATAGGAAGACTTTCT	0.468										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			5	37					0	0	0.000602214	0	0
CSMD3	114788	broad.mit.edu	37	8	113326282	113326282	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:113326282C>T	uc003ynu.2	-	49	7709	c.7550_splice	c.e49-1	p.G2517_splice	CSMD3_uc003yns.2_Splice_Site_p.G1719_splice|CSMD3_uc003ynt.2_Splice_Site_p.G2477_splice|CSMD3_uc011lhx.1_Splice_Site_p.G2413_splice|CSMD3_uc003ynw.1_Splice_Site_p.G228_splice	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1							integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATATTTGGTCCTTTGGGAAGA	0.289										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			7	72					0	0	0.000274275	0	0
CSMD3	114788	broad.mit.edu	37	8	113326806	113326806	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:113326806T>G	uc003ynu.2	-	48	7560	c.7401A>C	c.(7399-7401)GGA>GGC	p.G2467G	CSMD3_uc003yns.2_Silent_p.G1669G|CSMD3_uc003ynt.2_Silent_p.G2427G|CSMD3_uc011lhx.1_Silent_p.G2363G|CSMD3_uc003ynw.1_Silent_p.G178G	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2467	CUB 14.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCAATATGACTCCAGTAGAAT	0.393										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			6	33					0	0	0.00198382	0	0
CSMD3	114788	broad.mit.edu	37	8	114326819	114326819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:114326819G>A	uc003ynu.2	-	2	541	c.382C>T	c.(382-384)CCT>TCT	p.P128S	CSMD3_uc003ynt.2_Missense_Mutation_p.P88S|CSMD3_uc011lhx.1_Missense_Mutation_p.P128S|CSMD3_uc010mcx.1_Missense_Mutation_p.P128S|CSMD3_uc003ynx.3_Missense_Mutation_p.P128S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	128	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAGTTTGTAGGATGAGGATGT	0.313										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			9	99					0	0	0.000274275	0	0
TRPS1	7227	broad.mit.edu	37	8	116599237	116599237	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:116599237G>A	uc003ynz.2	-	4	3111	c.2652C>T	c.(2650-2652)TCC>TCT	p.S884S	TRPS1_uc011lhy.1_Silent_p.S888S|TRPS1_uc003yny.2_Silent_p.S897S|TRPS1_uc010mcy.2_Silent_p.S884S	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	884					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CCCGTAACAGGGACTGGGATT	0.493									Langer-Giedion_syndrome				15	65					0	0	0.000422831	0	0
SLC30A8	169026	broad.mit.edu	37	8	118184870	118184870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:118184870C>T	uc003yoh.2	+	8	1290	c.1060C>T	c.(1060-1062)CCA>TCA	p.P354S	SLC30A8_uc010mcz.2_Missense_Mutation_p.P305S|SLC30A8_uc011lia.1_Missense_Mutation_p.P305S|SLC30A8_uc003yog.2_Missense_Mutation_p.P305S	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	354	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			GATGGAATCTCCAGTTGACCA	0.507													22	150					0	0	0.00127121	0	0
SAMD12	401474	broad.mit.edu	37	8	119593061	119593061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:119593061C>T	uc003yom.2	-	2	214	c.85G>A	c.(85-87)GAA>AAA	p.E29K	SAMD12_uc010mda.1_Missense_Mutation_p.E29K|SAMD12_uc010mdb.1_RNA	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	29										ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			CCTTCACCTTCAATTTGCAGT	0.443													9	19					0	0	0.000442599	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119936639	119936639	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:119936639G>A	uc003yon.3	-	5	1503	c.1180C>T	c.(1180-1182)CAA>TAA	p.Q394*		NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	394					apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			TTTACTGATTGGACCTGGTTA	0.393													21	141					0	0	0.00278032	0	0
NOV	4856	broad.mit.edu	37	8	120435357	120435357	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:120435357C>T	uc003yoq.2	+	5	1280	c.1059C>T	c.(1057-1059)ACC>ACT	p.T353T		NM_002514	NP_002505	P48745	NOV_HUMAN	nephroblastoma overexpressed precursor	353					regulation of cell growth		growth factor activity|insulin-like growth factor binding			ovary(2)|skin(2)|kidney(1)	5	all_cancers(13;3.84e-26)|Lung NSC(37;1.19e-08)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000507)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGAAGACTACCAGAGGGAAAA	0.488													30	81					0	0	0.0024448	0	0
COL14A1	7373	broad.mit.edu	37	8	121209146	121209146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121209146G>A	uc003yox.2	+	6	818	c.553G>A	c.(553-555)GTT>ATT	p.V185I	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	185	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GGAAAACCTGGTTACAGCATT	0.418													32	168					0	0	0.00375469	0	0
COL14A1	7373	broad.mit.edu	37	8	121215985	121215985	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121215985C>T	uc003yox.2	+	9	1180	c.915C>T	c.(913-915)ATC>ATT	p.I305I	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	305	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TGCAGGAGATCGCCTCTGAAC	0.498													6	35					0	0	0.00116845	0	0
COL14A1	7373	broad.mit.edu	37	8	121220506	121220506	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121220506G>A	uc003yox.2	+	11	1492	c.1227G>A	c.(1225-1227)TTG>TTA	p.L409L	COL14A1_uc003yoy.2_Silent_p.L87L|COL14A1_uc010mde.1_Silent_p.L87L	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	409	Fibronectin type-III 2.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CCACAGTGTTGAAAAACTTGA	0.388													14	30					0	0	0.000422831	0	0
COL14A1	7373	broad.mit.edu	37	8	121237404	121237404	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121237404C>T	uc003yox.2	+	15	2080	c.1815C>T	c.(1813-1815)TCC>TCT	p.S605S	COL14A1_uc003yoy.2_Silent_p.S283S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	605	Fibronectin type-III 4.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CTATTTTCTCCATCTATGATG	0.393													7	69					0	0	0.00307968	0	0
COL14A1	7373	broad.mit.edu	37	8	121295969	121295969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121295969G>A	uc003yox.2	+	32	4184	c.3919G>A	c.(3919-3921)GAG>AAG	p.E1307K	COL14A1_uc003yoz.2_Missense_Mutation_p.E272K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1307	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TGCTCTTTGGGAGATTTTAAA	0.383													47	56					0	0	0.00361006	0	0
COL14A1	7373	broad.mit.edu	37	8	121295983	121295983	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121295983A>T	uc003yox.2	+	32	4198	c.3933A>T	c.(3931-3933)AAA>AAT	p.K1311N	COL14A1_uc003yoz.2_Missense_Mutation_p.K276N	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1311	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TTTTAAATAAAAATTCTGACC	0.383													11	80					0	0	0.000673444	0	0
MTBP	27085	broad.mit.edu	37	8	121528235	121528235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121528235C>T	uc003ypc.1	+	18	2095	c.2050C>T	c.(2050-2052)CGT>TGT	p.R684C		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	684	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TCGTCTTATTCGTTATGAAAC	0.393													11	50					0	0	0.000978159	0	0
MTBP	27085	broad.mit.edu	37	8	121530281	121530281	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121530281A>T	uc003ypc.1	+	19	2482	c.2437A>T	c.(2437-2439)ATG>TTG	p.M813L		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	813	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TCAAAAAAGTATGCATGAATC	0.373													10	48					0	0	0.000673444	0	0
SNTB1	6641	broad.mit.edu	37	8	121644714	121644714	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:121644714C>T	uc010mdg.2	-	3	1192	c.966G>A	c.(964-966)GAG>GAA	p.E322E	SNTB1_uc003ype.2_Silent_p.E322E	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	322	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			GATGCCTAATCTCTCGGCTCC	0.512													5	39					0	0	0.00198382	0	0
WDR67	93594	broad.mit.edu	37	8	124154599	124154599	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:124154599G>T	uc003ypp.1	+	19	2828	c.2738G>T	c.(2737-2739)CGA>CTA	p.R913L	WDR67_uc011lig.1_Intron|WDR67_uc011lih.1_Missense_Mutation_p.R803L|WDR67_uc003ypq.1_Intron|WDR67_uc003yps.1_Missense_Mutation_p.R547L|WDR67_uc003ypt.1_Intron|WDR67_uc003ypu.1_Intron	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	913						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			GATCTACAACGAAACAAATGT	0.378													7	120					0.00307968	0.00853147	0.00307968	1	0
FER1L6	654463	broad.mit.edu	37	8	124968292	124968292	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:124968292C>T	uc003yqw.2	+	2	260	c.54C>T	c.(52-54)ATC>ATT	p.I18I		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	18	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGGGGTTAATCCTAGCCAACA	0.483													5	25					0	0	0.000274275	0	0
FER1L6	654463	broad.mit.edu	37	8	124992888	124992888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:124992888C>T	uc003yqw.2	+	11	1453	c.1247C>T	c.(1246-1248)TCC>TTC	p.S416F		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	416	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TCTAAATTTTCCAAGGCCCTG	0.458											OREG0018964	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	74					0	0	0.000274275	0	0
FER1L6	654463	broad.mit.edu	37	8	124992978	124992978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:124992978G>A	uc003yqw.2	+	11	1543	c.1337G>A	c.(1336-1338)GGA>GAA	p.G446E		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	446	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			ACTGAAGATGGAAAATCCCAA	0.468											OREG0018964	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	51					0	0	0.00185496	0	0
FER1L6	654463	broad.mit.edu	37	8	124998379	124998379	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:124998379G>A	uc003yqw.2	+	12	1688	c.1482G>A	c.(1480-1482)AAG>AAA	p.K494K	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	494	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TTGACCGGAAGATTGGAGATA	0.249													17	110					0	0	0.00121646	0	0
MTSS1	9788	broad.mit.edu	37	8	125575043	125575043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:125575043G>A	uc003yrk.2	-	10	1549	c.1015C>T	c.(1015-1017)CCG>TCG	p.P339S	NDUFB9_uc011lim.1_Intron|MTSS1_uc011lin.1_Missense_Mutation_p.P73S|MTSS1_uc011lio.1_Missense_Mutation_p.P229S|MTSS1_uc003yri.2_Missense_Mutation_p.P139S|MTSS1_uc003yrj.2_Missense_Mutation_p.P339S|MTSS1_uc003yrl.2_Missense_Mutation_p.P343S	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	339	Ser-rich.				actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GCCTCTGGCGGCATGGGGGAT	0.612													15	49					0	0	0.00074312	0	0
ZNF572	137209	broad.mit.edu	37	8	125989788	125989788	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:125989788C>T	uc003yrr.2	+	3	1433	c.1278C>T	c.(1276-1278)ACC>ACT	p.T426T		NM_152412	NP_689625	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	426	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			AGAGTTCCACCCTGGTGATTC	0.438										HNSCC(60;0.17)			18	56					0	0	0.00074312	0	0
GSDMC	56169	broad.mit.edu	37	8	130789707	130789707	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:130789707T>A	uc003ysr.2	-	2	1009	c.127A>T	c.(127-129)AAG>TAG	p.K43*		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	43						mitochondrion				ovary(2)|skin(1)	3						CGAGAATCCTTCTTCTTTCGT	0.393													15	83					0	0	0.000422831	0	0
ASAP1	50807	broad.mit.edu	37	8	131104305	131104305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:131104305G>A	uc003yta.1	-	24	2514	c.2486C>T	c.(2485-2487)CCC>CTC	p.P829L	ASAP1_uc003ysz.1_Missense_Mutation_p.P640L|ASAP1_uc011liw.1_Missense_Mutation_p.P822L	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	829	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						GGGTGGTGGGGGAGGAGGCCT	0.562													14	86					0	0	0.00244969	0	0
ASAP1	50807	broad.mit.edu	37	8	131179856	131179857	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:131179856_131179857GG>TT	uc003yta.1	-	10	862_863	c.834_835CC>AA	c.(832-837)ACCCAG>ACAAAG	p.Q279K	ASAP1_uc003ysz.1_Missense_Mutation_p.Q87K|ASAP1_uc011liw.1_Missense_Mutation_p.Q272K	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	279					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						TCTTCATCCTGGGTCTGTTTTA	0.327													11	235					0	0	6.4e-05	0	0
ADCY8	114	broad.mit.edu	37	8	131792904	131792904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:131792904C>T	uc003ytd.3	-	18	3744	c.3488G>A	c.(3487-3489)GGA>GAA	p.G1163E	ADCY8_uc010mds.2_Missense_Mutation_p.G1032E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1163	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TTTGATTTTTCCTTCCTGTTC	0.512										HNSCC(32;0.087)			9	44					0	0	0.000442599	0	0
ADCY8	114	broad.mit.edu	37	8	131826339	131826339	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:131826339G>A	uc003ytd.3	-	14	3145	c.2889C>T	c.(2887-2889)TTC>TTT	p.F963F	ADCY8_uc010mds.2_Silent_p.F832F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	963	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CCTTCTCTAGGAAATGGCGGG	0.522										HNSCC(32;0.087)			17	51					0	0	0.000958276	0	0
ADCY8	114	broad.mit.edu	37	8	132002651	132002651	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:132002651C>T	uc003ytd.3	-	2	1354	c.1098G>A	c.(1096-1098)GAG>GAA	p.E366E	ADCY8_uc010mds.2_Silent_p.E366E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	366	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GTCTTTGGTTCTCTGTCTCCA	0.517										HNSCC(32;0.087)			12	86					0	0	0.000978159	0	0
EFR3A	23167	broad.mit.edu	37	8	132968031	132968031	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:132968031T>C	uc003yte.2	+	7	856	c.655T>C	c.(655-657)TCT>CCT	p.S219P		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	219						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			AGGCCCTCCTTCTTCTCCTTC	0.353													15	83					0	0	0.000958276	0	0
KCNQ3	3786	broad.mit.edu	37	8	133182620	133182620	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:133182620C>T	uc003ytj.2	-	8	1421	c.1196G>A	c.(1195-1197)TGG>TAG	p.W399*	KCNQ3_uc010mdt.2_Nonsense_Mutation_p.W399*	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	399					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ATAAAATCTCCATGTCGCCAC	0.532													23	43					0	0	0.001512	0	0
KCNQ3	3786	broad.mit.edu	37	8	133184930	133184930	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:133184930C>G	uc003ytj.2	-	7	1280	c.1055G>C	c.(1054-1056)GGG>GCG	p.G352A	KCNQ3_uc010mdt.2_Missense_Mutation_p.G352A	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	352					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CAGCCCGGACCCCAGGATGCC	0.617													4	43					0	0	0.000602214	0	0
TG	7038	broad.mit.edu	37	8	133894855	133894855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:133894855G>A	uc003ytw.2	+	7	928	c.887G>A	c.(886-888)CGA>CAA	p.R296Q		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	296	Thyroglobulin type-1 3.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGCAGATTCCGATGTAAGTAA	0.512													8	44					0	0	0.00307968	0	0
TG	7038	broad.mit.edu	37	8	133918938	133918938	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:133918938C>G	uc003ytw.2	+	17	3681	c.3640C>G	c.(3640-3642)CGG>GGG	p.R1214G	TG_uc010mdw.2_5'UTR	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1214					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CCCAGGCCCGCGGTGTCCGCT	0.617													3	50					0	0	0.00024832	0	0
TG	7038	broad.mit.edu	37	8	133978826	133978826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:133978826C>T	uc003ytw.2	+	30	5611	c.5570C>T	c.(5569-5571)TCC>TTC	p.S1857F	TG_uc010mdw.2_Missense_Mutation_p.S616F|TG_uc011ljb.1_Missense_Mutation_p.S226F|TG_uc011ljc.1_Missense_Mutation_p.S11F|TG_uc010mdx.1_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1857	Type IIIB.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GAACTTTTCTCCCCTGTGGAC	0.423													5	64					0	0	0.00116845	0	0
ST3GAL1	6482	broad.mit.edu	37	8	134477115	134477116	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:134477115_134477116CC>TT	uc003yuk.2	-	7	1417_1418	c.588_589GG>AA	c.(586-591)CGGGAG>CGAAAG	p.E197K	ST3GAL1_uc003yum.2_Missense_Mutation_p.E197K	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	197	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			TCTCCCAGCTCCCGGAAGCTCT	0.579													16	94					0	0	6.4e-05	0	0
ZFAT	57623	broad.mit.edu	37	8	135602517	135602517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:135602517G>A	uc003yup.2	-	8	2732	c.2557C>T	c.(2557-2559)CAT>TAT	p.H853Y	ZFAT_uc003yun.2_Missense_Mutation_p.H841Y|ZFAT_uc003yuo.2_Missense_Mutation_p.H841Y|ZFAT_uc010meh.2_Missense_Mutation_p.H841Y|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.H841Y|ZFAT_uc010mej.2_Missense_Mutation_p.H791Y	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	853	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			TTACCAGGATGGTTGGTCTTG	0.308													25	136					0	0	0.00332997	0	0
FAM135B	51059	broad.mit.edu	37	8	139158294	139158294	+	Splice_Site	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:139158294C>T	uc003yuy.2	-	15	3620	c.3449_splice	c.e15-1	p.G1150_splice	FAM135B_uc003yux.2_Splice_Site_p.G1051_splice|FAM135B_uc003yuz.2_Splice_Site|FAM135B_uc003yva.2_Splice_Site_p.G712_splice|FAM135B_uc003yvb.2_Splice_Site_p.W677_splice	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059											ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GCACTGTTCCCTAAAAATGAC	0.453										HNSCC(54;0.14)			12	61					0	0	0.00185496	0	0
COL22A1	169044	broad.mit.edu	37	8	139856336	139856336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:139856336C>T	uc003yvd.2	-	4	1171	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	242	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCTGTGATTTCCTTGGTTCCT	0.478										HNSCC(7;0.00092)			40	164					0	0	0.00361006	0	0
EIF2C2	27161	broad.mit.edu	37	8	141566090	141566090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:141566090G>A	uc003yvn.2	-	10	1214	c.1174C>T	c.(1174-1176)CCA>TCA	p.P392S	EIF2C2_uc010men.2_Missense_Mutation_p.P315S|EIF2C2_uc010meo.2_Missense_Mutation_p.P392S	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	392					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CGGACGTATGGATCTGTGTTG	0.562													9	91					0	0	0.000978159	0	0
GPR20	2843	broad.mit.edu	37	8	142367832	142367832	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:142367832G>A	uc003ywf.2	-	2	281	c.192C>T	c.(190-192)TTC>TTT	p.F64F		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	64	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			GCCCTGCCAGGAAGATGGCTC	0.647													6	21					0	0	0.00198382	0	0
ARC	23237	broad.mit.edu	37	8	143694850	143694850	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:143694850C>T	uc003ywn.1	-	1	984	c.783G>A	c.(781-783)GTG>GTA	p.V261V		NM_015193	NP_056008	Q7LC44	ARC_HUMAN	activity-regulated cytoskeleton-associated	261					endocytosis	acrosomal vesicle|cell junction|dendritic spine|endosome|postsynaptic density|postsynaptic membrane				breast(1)	1	all_cancers(97;3.55e-12)|all_epithelial(106;1.03e-08)|Lung NSC(106;0.000353)|all_lung(105;0.00092)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.0279)				CCCAGTTCTTCACGGAGCCCT	0.622													24	36					0	0	0.00106085	0	0
LYPD2	137797	broad.mit.edu	37	8	143833821	143833821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:143833821C>T	uc003ywz.2	-	1	132	c.49G>A	c.(49-51)GGA>AGA	p.G17R		NM_205545	NP_991108	Q6UXB3	LYPD2_HUMAN	LY6/PLAUR domain containing 2 precursor	17						anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CCCAGCTCTCCGCAGGCAGCC	0.706													10	40					0	0	0.000978159	0	0
CYP11B1	1584	broad.mit.edu	37	8	143958228	143958228	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:143958228G>A	uc003yxi.2	-	4	676	c.669C>T	c.(667-669)TTC>TTT	p.F223F	CYP11B1_uc010mex.2_5'Flank|CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Silent_p.F223F|CYP11B1_uc010mey.2_Silent_p.F294F	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	223					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GGGCATGGAGGAAGTTCAGGC	0.607									Familial_Hyperaldosteronism_type_I				10	36					0	0	0.00316338	0	0
TOP1MT	116447	broad.mit.edu	37	8	144391662	144391662	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:144391662C>T	uc003yxz.2	-	14	1774	c.1755G>A	c.(1753-1755)CGG>CGA	p.R585R	TOP1MT_uc011lkd.1_Silent_p.R487R|TOP1MT_uc011lke.1_Silent_p.R487R|TOP1MT_uc010mfb.2_Silent_p.R487R|TOP1MT_uc011lkf.1_3'UTR	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	585					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	CGAACCTCTCCCGCTGTGTTT	0.537													15	76					0	0	0.00152264	0	0
MAPK15	225689	broad.mit.edu	37	8	144801552	144801552	+	Silent	SNP	C	T	T	rs146454342		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:144801552C>T	uc003yzj.2	+	7	662	c.621C>T	c.(619-621)ATC>ATT	p.I207I		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	207	Protein kinase.				protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			TGGGCTGTATCCTGGGGGAGA	0.652													5	39					0	0	0.00116845	0	0
MAPK15	225689	broad.mit.edu	37	8	144803264	144803264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:144803264C>T	uc003yzj.2	+	10	1053	c.1012C>T	c.(1012-1014)CGC>TGC	p.R338C		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	338					protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GTACCGCAGCCGCGTCTATCA	0.657													4	6					0	0	0.00024832	0	0
EPPK1	83481	broad.mit.edu	37	8	144946006	144946006	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:144946006G>T	uc003zaa.1	-	1	1429	c.1416C>A	c.(1414-1416)CCC>CCA	p.P472P		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	472						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCCCTCCCCGGGGTCCCCCTG	0.687													8	36					1.33987e-11	3.75774e-11	0.000673444	1	0
PLEC	5339	broad.mit.edu	37	8	144993558	144993558	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:144993558G>A	uc003zaf.1	-	32	11012	c.10842C>T	c.(10840-10842)CCC>CCT	p.P3614P	PLEC_uc003zab.1_Silent_p.P3477P|PLEC_uc003zac.1_Silent_p.P3481P|PLEC_uc003zad.2_Silent_p.P3477P|PLEC_uc003zae.1_Silent_p.P3445P|PLEC_uc003zag.1_Silent_p.P3455P|PLEC_uc003zah.2_Silent_p.P3463P|PLEC_uc003zaj.2_Silent_p.P3504P	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3614	Globular 2.|Plectin 15.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GGCTGTGCACGGGGTCGATGA	0.677													14	33					0	0	0.00244969	0	0
PPP1R16A	84988	broad.mit.edu	37	8	145725921	145725921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:145725921G>A	uc003zdd.2	+	7	1670	c.757G>A	c.(757-759)GAA>AAA	p.E253K	uc003zde.1_5'Flank|PPP1R16A_uc003zdf.2_Missense_Mutation_p.E253K|GPT_uc011lli.1_5'Flank	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	253	ANK 4.					plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CCTGCTGCTGGAACACCGAGC	0.711													7	12					0	0	0.000274275	0	0
GPT	2875	broad.mit.edu	37	8	145731462	145731462	+	Missense_Mutation	SNP	G	A	A	rs145365806		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr8:145731462G>A	uc011lli.1	+	8	1061	c.904G>A	c.(904-906)GGG>AGG	p.G302R	GPT_uc011llj.1_Missense_Mutation_p.R324Q|GPT_uc003zdh.3_Missense_Mutation_p.G302R	NM_005309	NP_005300	P24298	ALAT1_HUMAN	glutamic pyruvate transaminase	302					gluconeogenesis	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|central_nervous_system(1)	2	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)		L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GCCCTACGCCGGGCAGCAGGA	0.667													13	17					0	0	0.00185496	0	0
JAK2	3717	broad.mit.edu	37	9	5123083	5123083	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:5123083C>A	uc010mhm.2	+	22	3252	c.3139C>A	c.(3139-3141)CTT>ATT	p.L1047I	JAK2_uc003ziw.2_Missense_Mutation_p.L1047I	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	1047	Protein kinase 2.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		TCTGTATGAACTTTTCACATA	0.343		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				13	23					9.31168e-06	2.59928e-05	0.00185496	1	0
RLN1	6013	broad.mit.edu	37	9	5335571	5335571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:5335571C>T	uc003zjb.1	-	2	365	c.238G>A	c.(238-240)GAT>AAT	p.D80N		NM_006911	NP_008842	P04808	REL1_HUMAN	relaxin 1 preproprotein	80					female pregnancy|signal transduction	extracellular region	hormone activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.02)|Lung(218;0.0984)		GTTTCTGTATCTTTGTTGATG	0.373													13	26					0	0	0.00185496	0	0
RANBP6	26953	broad.mit.edu	37	9	6012763	6012763	+	Missense_Mutation	SNP	G	A	A	rs147043824		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:6012763G>A	uc003zjr.2	-	1	2856	c.2845C>T	c.(2845-2847)CGT>TGT	p.R949C	RANBP6_uc011lmf.1_Missense_Mutation_p.R597C|RANBP6_uc003zjs.2_Missense_Mutation_p.R537C	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	949	HEAT 7.				protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		CATAAAGAACGATAATCATCT	0.413													8	34					0	0	0.00307968	0	0
IL33	90865	broad.mit.edu	37	9	6252943	6252943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:6252943G>A	uc003zjt.2	+	5	478	c.421G>A	c.(421-423)GAA>AAA	p.E141K	IL33_uc011lmg.1_Intron|IL33_uc011lmh.1_Intron|IL33_uc003zju.1_Missense_Mutation_p.E141K	NM_033439	NP_254274	O95760	IL33_HUMAN	interleukin 33 precursor	141					positive regulation of chemokine secretion|positive regulation of inflammatory response|positive regulation of macrophage activation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity				0		Acute lymphoblastic leukemia(23;0.158)|Prostate(43;0.167)		GBM - Glioblastoma multiforme(50;0.0161)|Lung(218;0.105)		TTTGGAGGATGAAAGTTATGA	0.264													14	54					0	0	0.00244969	0	0
GLDC	2731	broad.mit.edu	37	9	6587222	6587222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:6587222C>T	uc003zkc.2	-	15	1962	c.1769G>A	c.(1768-1770)GGA>GAA	p.G590E		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	590					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CTGCTGATATCCTTGAGCTTG	0.403													25	56					0	0	0.00395357	0	0
PTPRD	5789	broad.mit.edu	37	9	8471025	8471025	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:8471025C>T	uc003zkk.2	-	30	4185	c.3474G>A	c.(3472-3474)TGG>TGA	p.W1158*	PTPRD_uc003zkp.2_Nonsense_Mutation_p.W747*|PTPRD_uc003zkq.2_Nonsense_Mutation_p.W747*|PTPRD_uc003zkr.2_Nonsense_Mutation_p.W742*|PTPRD_uc003zks.2_Nonsense_Mutation_p.W737*|PTPRD_uc003zkl.2_Nonsense_Mutation_p.W1149*|PTPRD_uc003zkm.2_Nonsense_Mutation_p.W1145*|PTPRD_uc003zkn.2_Nonsense_Mutation_p.W747*|PTPRD_uc003zko.2_Nonsense_Mutation_p.W744*	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1158	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CTGGACTCTCCCATGGCTTGA	0.388										TSP Lung(15;0.13)			21	18					0	0	0.00332997	0	0
PTPRD	5789	broad.mit.edu	37	9	8504401	8504401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:8504401C>T	uc003zkk.2	-	22	2393	c.1682G>A	c.(1681-1683)CGA>CAA	p.R561Q	PTPRD_uc003zkp.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkq.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkr.2_Missense_Mutation_p.R555Q|PTPRD_uc003zks.2_Missense_Mutation_p.R551Q|PTPRD_uc003zkl.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkm.2_Missense_Mutation_p.R548Q|PTPRD_uc003zkn.2_Missense_Mutation_p.R561Q|PTPRD_uc003zko.2_Missense_Mutation_p.R558Q	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	561	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AATGGTAATTCGTTGCTGGAA	0.433										TSP Lung(15;0.13)			21	43					0	0	0.00395357	0	0
PTPRD	5789	broad.mit.edu	37	9	8528669	8528669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:8528669G>A	uc003zkk.2	-	14	1174	c.463C>T	c.(463-465)CCA>TCA	p.P155S	PTPRD_uc003zkp.2_Missense_Mutation_p.P155S|PTPRD_uc003zkq.2_Missense_Mutation_p.P155S|PTPRD_uc003zkr.2_Missense_Mutation_p.P155S|PTPRD_uc003zks.2_Missense_Mutation_p.P155S|PTPRD_uc003zkl.2_Missense_Mutation_p.P155S|PTPRD_uc003zkm.2_Missense_Mutation_p.P155S|PTPRD_uc003zkn.2_Missense_Mutation_p.P155S|PTPRD_uc003zko.2_Missense_Mutation_p.P155S|PTPRD_uc003zkt.1_Missense_Mutation_p.P155S	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	155	Extracellular (Potential).|Ig-like C2-type 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTGATTTCTGGATCCGGATTA	0.488										TSP Lung(15;0.13)			8	17					0	0	0.000274275	0	0
MPDZ	8777	broad.mit.edu	37	9	13168523	13168523	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:13168523G>A	uc010mia.1	-	21	3153	c.3096C>T	c.(3094-3096)ATC>ATT	p.I1032I	MPDZ_uc003zkz.3_5'UTR|MPDZ_uc010mhy.2_Silent_p.I1032I|MPDZ_uc010mhz.2_Silent_p.I1032I|MPDZ_uc011lmn.1_Silent_p.I1032I|MPDZ_uc003zlb.3_Silent_p.I1032I	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1032	PDZ 6.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		TGCTTCGAACGATCATCCCCA	0.353													21	73					0	0	0.00127121	0	0
CER1	9350	broad.mit.edu	37	9	14722658	14722658	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:14722658A>G	uc003zlj.2	-	1	58	c.13T>C	c.(13-15)TTA>CTA	p.L5L		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	5					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		AGCTGAAATAAGAGGAGATGC	0.517													7	19					0	0	0.00198382	0	0
FREM1	158326	broad.mit.edu	37	9	14750149	14750149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:14750149C>T	uc003zlm.2	-	30	6123	c.5533G>A	c.(5533-5535)GTG>ATG	p.V1845M	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_Intron|FREM1_uc003zll.2_Missense_Mutation_p.V381M	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1845					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AAAATTTTCACTGCAGCTTTT	0.443													11	55					0	0	0.00136819	0	0
FREM1	158326	broad.mit.edu	37	9	14801743	14801743	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:14801743A>G	uc003zlm.2	-	20	4191	c.3601T>C	c.(3601-3603)TTT>CTT	p.F1201L	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1201	CSPG 8.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCTTTGCTAAACCCCCTATCG	0.522													5	26					0	0	0.000602214	0	0
FREM1	158326	broad.mit.edu	37	9	14823287	14823287	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:14823287G>A	uc003zlm.2	-	13	2798	c.2208C>T	c.(2206-2208)CCC>CCT	p.P736P	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	736	CSPG 4.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TGTCTTGCATGGGGGGCATGT	0.443													43	45					0	0	0.00361006	0	0
TTC39B	158219	broad.mit.edu	37	9	15203850	15203850	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:15203850G>A	uc003zlr.1	-	7	653	c.532C>T	c.(532-534)CTA>TTA	p.L178L	TTC39B_uc003zlq.1_Silent_p.L147L|TTC39B_uc011lmp.1_Silent_p.L79L|TTC39B_uc010mie.1_Silent_p.L176L|TTC39B_uc011lmq.1_Silent_p.L178L|TTC39B_uc011lmr.1_Silent_p.L109L|TTC39B_uc010mif.1_Silent_p.L178L|TTC39B_uc003zls.1_Silent_p.L79L|TTC39B_uc010mig.1_Silent_p.L147L|TTC39B_uc011lms.1_RNA	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	178							binding			ovary(1)	1						GCTTTCTGTAGGAGACACTCG	0.393													8	34					0	0	0.000673444	0	0
C9orf93	203238	broad.mit.edu	37	9	15744343	15744343	+	Missense_Mutation	SNP	C	T	T	rs144600578		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:15744343C>T	uc003zmd.2	+	17	2437	c.2122C>T	c.(2122-2124)CTT>TTT	p.L708F	C9orf93_uc010mih.1_Missense_Mutation_p.L716F|C9orf93_uc003zme.2_Missense_Mutation_p.L623F|C9orf93_uc011lmu.1_Missense_Mutation_p.L716F|C9orf93_uc003zmf.1_Missense_Mutation_p.L16F	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	708											0				GBM - Glioblastoma multiforme(50;4.84e-07)		ACAGTTGGTTCTTGAAAATTC	0.363													9	32					0	0	0.000274275	0	0
BNC2	54796	broad.mit.edu	37	9	16552729	16552729	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:16552729G>A	uc003zml.2	-	5	608	c.468C>T	c.(466-468)CAC>CAT	p.H156H	BNC2_uc011lmw.1_Silent_p.H61H|BNC2_uc003zmm.2_Silent_p.H114H|BNC2_uc003zmq.1_Silent_p.H170H|BNC2_uc003zmr.1_Silent_p.H193H|BNC2_uc003zmp.1_Silent_p.H184H|BNC2_uc010mij.1_Silent_p.H78H|BNC2_uc011lmv.1_5'UTR|BNC2_uc003zmo.1_Silent_p.H78H	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	156					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		CTTGGGTGGGGTGGTACAGGT	0.542													5	30					0	0	0.00116845	0	0
HAUS6	54801	broad.mit.edu	37	9	19058022	19058022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:19058022G>A	uc003znk.2	-	16	2996	c.2743C>T	c.(2743-2745)CCA>TCA	p.P915S	HAUS6_uc011lmz.1_Missense_Mutation_p.P635S|HAUS6_uc003znl.1_Missense_Mutation_p.P779S	NM_017645	NP_060115	Q7Z4H7	HAUS6_HUMAN	HAUS augmin-like complex, subunit 6	915					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleus|spindle				ovary(2)	2						TGTTCCACTGGAGAAAACTTA	0.388													32	15					0	0	0.00178596	0	0
IFNB1	3456	broad.mit.edu	37	9	21077355	21077355	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:21077355G>A	uc003zok.2	-	1	589	c.514C>T	c.(514-516)CTA>TTA	p.L172L		NM_002176	NP_002167	P01574	IFNB_HUMAN	interferon, beta 1, fibroblast precursor	172					activation of caspase activity|B cell proliferation|blood coagulation|cellular response to exogenous dsRNA|defense response to virus|induction of apoptosis|natural killer cell activation|negative regulation of cell proliferation|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of viral genome replication|negative regulation of viral transcription|negative regulation of virion penetration into host cell|positive regulation of innate immune response|positive regulation of transcription from RNA polymerase II promoter|regulation of MHC class I biosynthetic process|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding|transcription corepressor activity			ovary(1)|breast(1)|kidney(1)	3				GBM - Glioblastoma multiforme(5;7.45e-142)|Lung(24;2.42e-17)|LUSC - Lung squamous cell carcinoma(38;7.17e-11)	Interferon beta-1a(DB00060)|Interferon beta-1b(DB00068)	AAGTTCCTTAGGATTTCCACT	0.458													8	19					0	0	0.000978159	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971109	21971109	+	Missense_Mutation	SNP	G	C	C	rs34968276		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:21971109G>C	uc003zpk.2	-	2	461	c.249C>G	c.(247-249)CAC>CAG	p.H83Q	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.R139G	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	83	ANK 3.		H -> N (in a lung tumor).|H -> Y (in a pancreas and a head and neck tumor).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.H83Y(27)|p.?(13)|p.D84fs*63(2)|p.H83fs*2(2)|p.H83P(2)|p.H83N(1)|p.V82fs*62(1)|p.V82_E88del(1)|p.V82_G89>G(1)|p.D84fs*0(1)|p.E61_L94del(1)|p.D84fs*36(1)|p.R137fs*48(1)|p.A68fs*3(1)|p.P81_A85del(1)|p.R80fs*34(1)|p.H83R(1)|p.H83Q(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		GGGCAGCGTCGTGCACGGGTC	0.741		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			12	28					0	0	0.00316338	0	0
ELAVL2	1993	broad.mit.edu	37	9	23704940	23704940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:23704940G>A	uc003zpu.2	-	4	738	c.463C>T	c.(463-465)CGT>TGT	p.R155C	ELAVL2_uc003zps.2_Missense_Mutation_p.R155C|ELAVL2_uc003zpt.2_Missense_Mutation_p.R155C|ELAVL2_uc003zpv.2_Missense_Mutation_p.R155C|ELAVL2_uc003zpw.2_Missense_Mutation_p.R155C	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	155	RRM 2.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		ACAAGAATACGAGAAGTAATA	0.418													37	28					0	0	0.00128727	0	0
IFT74	80173	broad.mit.edu	37	9	26978173	26978173	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:26978173G>A	uc010mja.2	+	3	295	c.168G>A	c.(166-168)GGG>GGA	p.G56G	IFT74_uc010mjb.2_Silent_p.G56G|IFT74_uc003zqf.3_Silent_p.G56G|IFT74_uc003zqg.3_Silent_p.G56G	NM_001099223	NP_001092693	Q96LB3	IFT74_HUMAN	coiled-coil domain containing 2 isoform a	56						cytoplasmic membrane-bounded vesicle|intraflagellar transport particle B|microtubule-based flagellum				skin(1)	1		all_neural(11;2.36e-10)		Lung(218;1.4e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		GTCCCATAGGGACTGGTGGAG	0.423													12	9					0	0	0.00136819	0	0
TEK	7010	broad.mit.edu	37	9	27169586	27169586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:27169586G>A	uc003zqi.3	+	4	1029	c.587G>A	c.(586-588)GGA>GAA	p.G196E	TEK_uc010mjc.1_Missense_Mutation_p.G49E|TEK_uc011lnn.1_Missense_Mutation_p.G196E|TEK_uc011lno.1_Missense_Mutation_p.G196E|TEK_uc011lnp.1_Missense_Mutation_p.G92E|TEK_uc003zqj.1_Missense_Mutation_p.G173E	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	196	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TATATAGGAGGAAACCTCTTC	0.488													8	33					0	0	0.000274275	0	0
LINGO2	158038	broad.mit.edu	37	9	27950308	27950308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:27950308G>A	uc003zqu.1	-	2	556	c.362C>T	c.(361-363)CCT>CTT	p.P121L	LINGO2_uc010mjf.1_Missense_Mutation_p.P121L|LINGO2_uc003zqv.1_Missense_Mutation_p.P121L	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	121	LRR 3.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		TACTCCCAAAGGGACCAGCTT	0.428													11	15					0	0	0.00136819	0	0
TAF1L	138474	broad.mit.edu	37	9	32632772	32632772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:32632772C>T	uc003zrg.1	-	1	2896	c.2806G>A	c.(2806-2808)GAA>AAA	p.E936K	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	936					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TGGAAATCTTCCTCATTTTCT	0.463													15	45					0	0	0.00074312	0	0
NOL6	65083	broad.mit.edu	37	9	33465871	33465871	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:33465871C>G	uc003zsz.2	-	19	2490	c.2389G>C	c.(2389-2391)GTG>CTG	p.V797L	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Missense_Mutation_p.V794L|NOL6_uc011lob.1_Missense_Mutation_p.V745L|NOL6_uc003ztb.1_Missense_Mutation_p.V797L	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	797					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		TGATAGGCCACGCGAATCCGA	0.577													8	14					0	0	0.000673444	0	0
PIGO	84720	broad.mit.edu	37	9	35092159	35092159	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:35092159G>A	uc003zwd.2	-	7	2121	c.1725C>T	c.(1723-1725)TTC>TTT	p.F575F	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Intron|PIGO_uc003zwf.2_Intron|PIGO_uc003zwg.1_Silent_p.F138F	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	575	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AGCCCAAAAGGAAGGGGGTGG	0.562													10	6					0	0	0.000442599	0	0
CCIN	881	broad.mit.edu	37	9	36170051	36170051	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:36170051C>T	uc003zzb.3	+	1	663	c.552C>T	c.(550-552)CTC>CTT	p.L184L		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	184	BACK.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			GCCGCCTGCTCCGTGATGAAA	0.532													4	14					0	0	0.00116845	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39085744	39085744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:39085744C>T	uc004abi.2	-	21	3670	c.3431G>A	c.(3430-3432)GGA>GAA	p.G1144E	CNTNAP3_uc004abj.2_Missense_Mutation_p.G1063E|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_3'UTR	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	1144	Laminin G-like 4.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TAAAACCTTTCCCAATATGAG	0.408													29	76					0	0	0.001512	0	0
FAM75A6	389730	broad.mit.edu	37	9	43625319	43625319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:43625319C>T	uc011lrb.1	-	4	3397	c.3368G>A	c.(3367-3369)GGA>GAA	p.G1123E		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	1123						integral to membrane					0						AGTCCTCAATCCTTCAAGCCT	0.473													25	61					0	0	0.00222228	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627092	43627092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:43627092G>A	uc011lrb.1	-	4	1624	c.1595C>T	c.(1594-1596)TCC>TTC	p.S532F		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	532						integral to membrane					0						TTCAGGTAGGGAGAGAGCTTG	0.473													54	109					0	0	0.00361006	0	0
TJP2	9414	broad.mit.edu	37	9	71842944	71842944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:71842944C>T	uc004ahe.2	+	9	1567	c.1367C>T	c.(1366-1368)CCC>CTC	p.P456L	TJP2_uc011lrs.1_Missense_Mutation_p.P433L|TJP2_uc011lrt.1_Missense_Mutation_p.P433L|TJP2_uc004ahd.2_Missense_Mutation_p.P456L|TJP2_uc004ahf.2_Missense_Mutation_p.P456L|TJP2_uc011lru.1_Missense_Mutation_p.P460L|TJP2_uc011lrv.1_Missense_Mutation_p.P478L	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	456					cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						GGTGCGACACCCACTCCCTTT	0.493													8	13					0	0	0.000274275	0	0
MAMDC2	256691	broad.mit.edu	37	9	72724664	72724664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:72724664G>A	uc004ahm.2	+	4	1066	c.449G>A	c.(448-450)GGA>GAA	p.G150E	MAMDC2_uc004ahn.2_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	150	MAM 1.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						CTAGGACAGGGAAACACAGCC	0.383													16	40					0	0	0.00121646	0	0
MAMDC2	256691	broad.mit.edu	37	9	72840934	72840934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:72840934G>A	uc004ahm.2	+	14	2664	c.2047G>A	c.(2047-2049)GAA>AAA	p.E683K	MAMDC2_uc004ahn.2_RNA|uc004ahq.1_Intron	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	683						endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						GGACTTAAATGAAATTGAGTA	0.294													30	27					0	0	0.00375469	0	0
TMEM2	23670	broad.mit.edu	37	9	74359987	74359987	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:74359987G>A	uc011lsa.1	-	4	1521	c.981C>T	c.(979-981)ATC>ATT	p.I327I	TMEM2_uc010mos.2_Silent_p.I327I|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	327						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		GGATCATCTGGATGGTTCCTT	0.522													10	43					0	0	0.000978159	0	0
TMEM2	23670	broad.mit.edu	37	9	74360004	74360004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:74360004G>A	uc011lsa.1	-	4	1504	c.964C>T	c.(964-966)CTC>TTC	p.L322F	TMEM2_uc010mos.2_Missense_Mutation_p.L322F|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	322						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		CCTTGTAAGAGACTTTTAGCG	0.512													8	43					0	0	0.000442599	0	0
TMC1	117531	broad.mit.edu	37	9	75357378	75357378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:75357378C>T	uc004aiz.1	+	10	1012	c.472C>T	c.(472-474)CGT>TGT	p.R158C	TMC1_uc010moz.1_Missense_Mutation_p.R116C|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.R12C|TMC1_uc010mpa.1_Missense_Mutation_p.R12C	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	158	Cytoplasmic (Potential).|Arg/Asp/Glu/Lys-rich (highly charged).				sensory perception of sound	integral to membrane				ovary(1)	1						AAAATTCCTCCGTGATTTTGA	0.383													9	30					0	0	0.00136819	0	0
RORB	6096	broad.mit.edu	37	9	77280476	77280476	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:77280476G>T	uc004aji.2	+	7	1047	c.998G>T	c.(997-999)GGA>GTA	p.G333V	RORB_uc004ajh.2_Missense_Mutation_p.G322V	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	333	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CTGTTTGAAGGAAAATATGGA	0.353													24	57					7.07758e-08	1.97955e-07	0.000720815	1	0
TRPM6	140803	broad.mit.edu	37	9	77386640	77386640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:77386640C>T	uc004ajl.1	-	25	3753	c.3515G>A	c.(3514-3516)CGA>CAA	p.R1172Q	TRPM6_uc004ajk.1_Missense_Mutation_p.R1167Q|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.R128Q	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1172	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CACTCGGATTCGTTCCTCACA	0.368													10	51					0	0	0.00136819	0	0
GCNT1	2650	broad.mit.edu	37	9	79118029	79118029	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:79118029G>A	uc010mpf.2	+	3	1073	c.732G>A	c.(730-732)ACG>ACA	p.T244T	GCNT1_uc010mpg.2_Silent_p.T244T|GCNT1_uc010mph.2_Silent_p.T244T|GCNT1_uc004akf.3_Silent_p.T244T|GCNT1_uc010mpi.2_Silent_p.T244T|GCNT1_uc004akh.3_Silent_p.T244T	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	244	Lumenal (Potential).|Catalytic (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						ACCTGGAAACGGAGAGGATGC	0.418													10	31					0	0	0.000978159	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323513	79323513	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:79323513T>C	uc010mpk.2	-	8	3801	c.3677A>G	c.(3676-3678)GAT>GGT	p.D1226G		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1226					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CATGTCTTTATCTCTCATGAC	0.433													14	23					0	0	0.00316338	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324317	79324317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:79324317G>A	uc010mpk.2	-	8	2997	c.2873C>T	c.(2872-2874)TCG>TTG	p.S958L		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	958					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GGAAGGCACCGAATCTTCTCC	0.423													9	58					0	0	0.000442599	0	0
FLJ46321	389763	broad.mit.edu	37	9	84604719	84604719	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:84604719G>A	uc004amn.2	+	2	260	c.213G>A	c.(211-213)AGG>AGA	p.R71R		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	71						integral to membrane					0						AGAGGAGAAGGAAAGGTGGGA	0.438													7	18					0	0	0.00307968	0	0
FRMD3	257019	broad.mit.edu	37	9	85913696	85913696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:85913696G>A	uc004ams.1	-	12	1239	c.1037C>T	c.(1036-1038)TCC>TTC	p.S346F	FRMD3_uc004amr.1_Missense_Mutation_p.S332F	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	346						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						CTGGATCTTGGAACTGGCCTC	0.493													12	22					0	0	0.000422831	0	0
FRMD3	257019	broad.mit.edu	37	9	85958174	85958174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:85958174C>T	uc004ams.1	-	5	605	c.403G>A	c.(403-405)GAC>AAC	p.D135N	FRMD3_uc004amr.1_Missense_Mutation_p.D121N	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	135	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						TGAAAAATGTCCCTTTTAATC	0.463													18	27					0	0	0.00152264	0	0
NTRK2	4915	broad.mit.edu	37	9	87570406	87570406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:87570406G>A	uc004aoa.1	+	18	3036	c.2098G>A	c.(2098-2100)GAC>AAC	p.D700N	NTRK2_uc004any.1_Missense_Mutation_p.D700N|NTRK2_uc004anz.1_Missense_Mutation_p.D716N	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	700	Protein kinase.|Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						GATGTCCCGGGACGTGTACAG	0.557										TSP Lung(25;0.17)			5	7					0	0	0.00198382	0	0
C9orf79	286234	broad.mit.edu	37	9	90500615	90500615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:90500615C>T	uc004app.3	+	4	1248	c.1213C>T	c.(1213-1215)CCC>TCC	p.P405S	C9orf79_uc004apo.1_Missense_Mutation_p.P217S	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	405						integral to membrane				ovary(3)	3						GACCCTAAATCCCTTCTGGAA	0.562													17	15					0	0	0.000566183	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535945	90535945	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:90535945C>T	uc010mqi.2	+	4	1152	c.1123C>T	c.(1123-1125)CTA>TTA	p.L375L	FAM75C1_uc004apq.3_Silent_p.L358L	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						TCCTGCTTTTCTATCCCCGAT	0.517													27	95					0	0	0.00321405	0	0
Unknown	0	broad.mit.edu	37	9	90746873	90746873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:90746873G>A	uc011lti.1	-	4	1108	c.1079C>T	c.(1078-1080)TCT>TTT	p.S360F						SubName: Full=cDNA FLJ59639;																		GACTGGGAAAGAGGATTGAAG	0.532													31	101					0	0	0.0025221	0	0
SEMA4D	10507	broad.mit.edu	37	9	92006203	92006203	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:92006203G>A	uc004aqo.1	-	11	1322	c.750C>T	c.(748-750)ATC>ATT	p.I250I	SEMA4D_uc011ltm.1_Silent_p.I250I|SEMA4D_uc011ltn.1_RNA|SEMA4D_uc011lto.1_RNA|SEMA4D_uc004aqp.1_Silent_p.I248I	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	250	Sema.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						CTATCCGTGGGATCAGCACCC	0.572													7	31					0	0	0.000442599	0	0
SYK	6850	broad.mit.edu	37	9	93639981	93639981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:93639981G>A	uc004aqz.2	+	10	1515	c.1310G>A	c.(1309-1311)GGG>GAG	p.G437E	SYK_uc004ara.2_Missense_Mutation_p.G414E|SYK_uc004arb.2_Missense_Mutation_p.G414E|SYK_uc004arc.2_Missense_Mutation_p.G437E|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	437	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CGGATGATCGGGATATGCGAG	0.507			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								17	10					0	0	0.000958276	0	0
AUH	549	broad.mit.edu	37	9	93983214	93983214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:93983214G>A	uc004arf.3	-	7	751	c.716C>T	c.(715-717)TCT>TTT	p.S239F	AUH_uc004arg.3_Missense_Mutation_p.S210F	NM_001698	NP_001689	Q13825	AUHM_HUMAN	AU RNA binding protein/enoyl-Coenzyme A	239					branched chain family amino acid catabolic process|mRNA catabolic process	mitochondrial matrix	enoyl-CoA hydratase activity|methylglutaconyl-CoA hydratase activity|mRNA 3'-UTR binding				0						GACTCGCGCAGAGAATATGAG	0.557													10	48					0	0	0.000978159	0	0
PTCH1	5727	broad.mit.edu	37	9	98231074	98231074	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:98231074C>A	uc004avk.3	-	14	2397	c.2209G>T	c.(2209-2211)GAG>TAG	p.E737*	PTCH1_uc010mro.2_Nonsense_Mutation_p.E586*|PTCH1_uc010mrp.2_Nonsense_Mutation_p.E586*|PTCH1_uc010mrq.2_Nonsense_Mutation_p.E586*|PTCH1_uc004avl.3_Nonsense_Mutation_p.E586*|PTCH1_uc010mrr.2_Nonsense_Mutation_p.E671*|PTCH1_uc004avm.3_Nonsense_Mutation_p.E736*|PTCH1_uc010mrs.1_Nonsense_Mutation_p.E405*	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	737	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				TAGTGCTTCTCAGCAAAAGAT	0.507									Basal_Cell_Nevus_syndrome				12	164					0.000308642	0.000859853	0.00316338	1	0
TRIM14	9830	broad.mit.edu	37	9	100857249	100857249	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:100857249G>A	uc004ayd.2	-	4	618	c.600C>T	c.(598-600)CCC>CCT	p.P200P	TRIM14_uc004ayf.1_Silent_p.P107P|TRIM14_uc011luz.1_5'Flank|TRIM14_uc011lva.1_5'Flank|TRIM14_uc004ayg.1_Silent_p.P200P|TRIM14_uc004ayh.1_Silent_p.P200P|TRIM14_uc004ayi.1_Silent_p.P200P|TRIM14_uc004ayj.1_Silent_p.P107P	NM_033220	NP_150089	Q14142	TRI14_HUMAN	tripartite motif protein TRIM14 isoform alpha	200						cytoplasm|intracellular	zinc ion binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.0559)				AGAGGGGCACGGGATGGCACA	0.597													9	22					0	0	0.000442599	0	0
GRIN3A	116443	broad.mit.edu	37	9	104499744	104499744	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:104499744C>T	uc004bbp.1	-	1	1119	c.518G>A	c.(517-519)TGG>TAG	p.W173*	GRIN3A_uc004bbq.1_Nonsense_Mutation_p.W173*	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	173	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GTCACTGCTCCATGGCGAACT	0.602													6	17					0	0	0.00198382	0	0
OR13C4	138804	broad.mit.edu	37	9	107288800	107288800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:107288800C>T	uc011lvn.1	-	1	691	c.691G>A	c.(691-693)GCC>ACC	p.A231T		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTCCTGTGGCCGAGTTCGTT	0.418													13	60					0	0	0.00244969	0	0
OR13C8	138802	broad.mit.edu	37	9	107331529	107331529	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:107331529C>T	uc011lvo.1	+	1	81	c.81C>T	c.(79-81)TTC>TTT	p.F27F		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGACAGTTTTCTTCGTTCTAA	0.433													17	62					0	0	0.000566183	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111979238	111979238	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:111979238G>A	uc004bdz.1	-	16	1892	c.1597C>T	c.(1597-1599)CTG>TTG	p.L533L		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	533						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GGGGACCTCAGAGGCCCCTCT	0.453													13	32					0	0	0.00244969	0	0
SVEP1	79987	broad.mit.edu	37	9	113192631	113192631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:113192631C>T	uc010mtz.2	-	33	5790	c.5453G>A	c.(5452-5454)GGA>GAA	p.G1818E	SVEP1_uc010mty.2_5'Flank	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1818	Sushi 7.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CAACTGGTATCCTTCCTGACA	0.403													4	10					0	0	0.00024832	0	0
SVEP1	79987	broad.mit.edu	37	9	113194887	113194887	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:113194887C>T	uc010mtz.2	-	31	5425	c.5088G>A	c.(5086-5088)TTG>TTA	p.L1696L		NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1696	Sushi 6.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AGCCATTCTCCAAAGGAGGTG	0.443													8	29					0	0	0.000442599	0	0
MUSK	4593	broad.mit.edu	37	9	113547146	113547146	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:113547146C>A	uc004bey.2	+	11	1534	c.1436C>A	c.(1435-1437)CCT>CAT	p.P479H	MUSK_uc004bez.1_Missense_Mutation_p.P59H	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	479	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CCAAATCTGCCTTCCTCCTCC	0.398													11	50					1.36491e-13	3.83557e-13	0.00185496	1	0
LPAR1	1902	broad.mit.edu	37	9	113704247	113704247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:113704247G>A	uc004bfa.2	-	4	502	c.247C>T	c.(247-249)CCT>TCT	p.P83S	LPAR1_uc011lwm.1_Missense_Mutation_p.P84S|LPAR1_uc004bfb.2_Missense_Mutation_p.P83S|LPAR1_uc004bfc.2_Missense_Mutation_p.P83S|LPAR1_uc011lwn.1_Missense_Mutation_p.P65S|LPAR1_uc011lwo.1_Missense_Mutation_p.P84S|LPAR1_uc010mub.2_Missense_Mutation_p.P83S	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	83	Helical; Name=2; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						TAATAAATAGGAAAATGGAAG	0.458													7	32					0	0	0.00198382	0	0
ZNF483	158399	broad.mit.edu	37	9	114304050	114304050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:114304050G>A	uc004bff.2	+	6	1059	c.835G>A	c.(835-837)GGA>AGA	p.G279R	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	279					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						CGGTAATCAGGGAAATTCAAA	0.423													19	31					0	0	0.00152264	0	0
ZNF483	158399	broad.mit.edu	37	9	114304503	114304503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:114304503G>A	uc004bff.2	+	6	1512	c.1288G>A	c.(1288-1290)GAG>AAG	p.E430K	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	430					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						AAATAAAGATGAGGGAAATGA	0.388													16	30					0	0	0.000422831	0	0
ZFP37	7539	broad.mit.edu	37	9	115806392	115806392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:115806392G>A	uc004bgm.1	-	4	534	c.506C>T	c.(505-507)CCT>CTT	p.P169L	ZFP37_uc011lwz.1_Missense_Mutation_p.P184L|ZFP37_uc011lxa.1_Missense_Mutation_p.P170L	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	169						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TTTCTTTGAAGGAACATGTTT	0.338													20	33					0	0	0.00152264	0	0
TNC	3371	broad.mit.edu	37	9	117791725	117791725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:117791725C>T	uc004bjj.3	-	25	6445	c.6083G>A	c.(6082-6084)AGA>AAA	p.R2028K	TNC_uc010mvf.2_Missense_Mutation_p.R1755K	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	2028	Fibrinogen C-terminal.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GTTTTTGCGTCTCAGGAACAC	0.373													19	36					0	0	0.00152264	0	0
TNC	3371	broad.mit.edu	37	9	117810801	117810801	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:117810801G>A	uc004bjj.3	-	16	4952	c.4590C>T	c.(4588-4590)CCC>CCT	p.P1530P	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1530	Fibronectin type-III 11.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TTTCCAGAAGGGGCAGGGCCT	0.483													4	25					0	0	0.000602214	0	0
TNC	3371	broad.mit.edu	37	9	117819641	117819641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:117819641G>A	uc004bjj.3	-	15	4732	c.4370C>T	c.(4369-4371)TCC>TTC	p.S1457F	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1457	Fibronectin type-III 10.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						AGCCATCCAGGAGAGATTGAA	0.403													28	100					0	0	0.00283554	0	0
TNC	3371	broad.mit.edu	37	9	117826273	117826273	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:117826273G>T	uc004bjj.3	-	12	3924	c.3562C>A	c.(3562-3564)CCA>ACA	p.P1188T	TNC_uc010mvf.2_Missense_Mutation_p.P1188T	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1188	Fibronectin type-III 7.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GCCCCTTCTGGAGCAGTCCAG	0.552													24	39					1.26454e-06	3.53423e-06	0.000878237	1	0
TNC	3371	broad.mit.edu	37	9	117853099	117853099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:117853099C>T	uc004bjj.3	-	2	561	c.199G>A	c.(199-201)GAT>AAT	p.D67N	TNC_uc010mvf.2_Missense_Mutation_p.D67N	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	67					cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GACTCCAGATCCACCGAACAC	0.552													14	26					0	0	0.000566183	0	0
PAPPA	5069	broad.mit.edu	37	9	119097240	119097240	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:119097240C>T	uc004bjn.2	+	13	3879	c.3498C>T	c.(3496-3498)TTC>TTT	p.F1166F	PAPPA_uc011lxp.1_Silent_p.F861F|PAPPA_uc011lxq.1_Silent_p.F541F	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1166					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GTGTGAGCTTCAGTTCGCCCC	0.617													5	24					0	0	0.00198382	0	0
DBC1	1620	broad.mit.edu	37	9	121929778	121929778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:121929778G>A	uc004bkc.2	-	8	2326	c.1870C>T	c.(1870-1872)CGG>TGG	p.R624W		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	624					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GTAGGTAGCCGAGTCCGACTA	0.542													25	45					0	0	0.00278032	0	0
DBC1	1620	broad.mit.edu	37	9	122075558	122075558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:122075558C>T	uc004bkc.2	-	2	532	c.76G>A	c.(76-78)GAA>AAA	p.E26K	DBC1_uc004bkd.2_Missense_Mutation_p.E26K	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	26					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CCAGCTGGTTCCTGGTGGGAG	0.517													15	17					0	0	0.000566183	0	0
TRAF1	7185	broad.mit.edu	37	9	123667328	123667328	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:123667328G>A	uc004bku.1	-	8	1793	c.1221C>T	c.(1219-1221)TTC>TTT	p.F407F	TRAF1_uc011lyg.1_Silent_p.F285F|TRAF1_uc010mvl.1_Silent_p.F407F	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	407	MATH.				apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						TGCACTTGAGGAACATTGTGT	0.587													6	11					0	0	0.00198382	0	0
PTGS1	5742	broad.mit.edu	37	9	125154756	125154756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:125154756C>T	uc004bmg.1	+	11	1868	c.1733C>T	c.(1732-1734)TCC>TTC	p.S578F	PTGS1_uc011lys.1_Missense_Mutation_p.S516F|PTGS1_uc010mwb.1_Missense_Mutation_p.S432F|PTGS1_uc004bmf.1_Missense_Mutation_p.S541F|PTGS1_uc004bmh.1_Missense_Mutation_p.S469F|PTGS1_uc011lyt.1_Missense_Mutation_p.S469F	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	578					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CCCTACGTTTCCTTCCGTGTG	0.582													19	28					0	0	0.000958276	0	0
OR1J2	26740	broad.mit.edu	37	9	125273295	125273295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:125273295C>T	uc004bmj.1	+	4	1070	c.215C>T	c.(214-216)TCC>TTC	p.S72F	OR1J2_uc011lyv.1_Missense_Mutation_p.S72F	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						ACTGACATCTCCTTTTCATCT	0.468													11	49					0	0	0.000978159	0	0
OR1N2	138882	broad.mit.edu	37	9	125316141	125316141	+	Silent	SNP	C	T	T	rs148945100		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:125316141C>T	uc011lyx.1	+	1	693	c.693C>T	c.(691-693)ATC>ATT	p.I231I		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	231	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						TCCTGCTGATCGTCTTCTCCT	0.522													16	26					0	0	0.00074312	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377471	125377471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:125377471C>T	uc011lyy.1	+	1	455	c.455C>T	c.(454-456)TCC>TTC	p.S152F		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CATGCTCTCTCCCACCTTCAT	0.488													14	25					0	0	0.000422831	0	0
OR1L6	392390	broad.mit.edu	37	9	125512861	125512861	+	Silent	SNP	C	T	T	rs150308775		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:125512861C>T	uc011lzc.1	+	1	843	c.843C>T	c.(841-843)CAC>CAT	p.H281H		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	281	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGGCTCCCACCTCACTGCAG	0.507													5	25					0	0	0.00198382	0	0
DENND1A	57706	broad.mit.edu	37	9	126144643	126144643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:126144643G>A	uc004bnz.1	-	22	2331	c.2098C>T	c.(2098-2100)CCC>TCC	p.P700S	DENND1A_uc011lzl.1_Missense_Mutation_p.P518S|DENND1A_uc004bny.1_Missense_Mutation_p.P482S|DENND1A_uc011lzm.1_Missense_Mutation_p.P711S|DENND1A_uc010mwh.1_Missense_Mutation_p.P121S	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	700	Pro-rich.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						TGGGGCCGGGGGATGGTGATG	0.692													4	14					0	0	0.00116845	0	0
MAPKAP1	79109	broad.mit.edu	37	9	128201234	128201234	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:128201234T>C	uc004bpv.2	-	12	1834	c.1501A>G	c.(1501-1503)AAA>GAA	p.K501E	MAPKAP1_uc011lzt.1_Missense_Mutation_p.K304E|MAPKAP1_uc010mwz.2_RNA|MAPKAP1_uc011lzu.1_Missense_Mutation_p.K304E|MAPKAP1_uc011lzv.1_Missense_Mutation_p.K209E|MAPKAP1_uc004bpw.2_Missense_Mutation_p.K309E|MAPKAP1_uc004bpx.2_Missense_Mutation_p.K309E|MAPKAP1_uc004bpy.2_Missense_Mutation_p.K465E|MAPKAP1_uc004bpz.2_Missense_Mutation_p.K454E|MAPKAP1_uc010mxa.2_RNA|MAPKAP1_uc004bpu.2_RNA	NM_001006617	NP_001006618	Q9BPZ7	SIN1_HUMAN	mitogen-activated protein kinase associated	501	Interaction with ATF2.				nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|response to stress|T cell costimulation	cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	Ras GTPase binding			ovary(2)|lung(2)	4						TTTCTTTGTTTTTGAGCAAAG	0.532													46	36					0	0	0.00361006	0	0
PBX3	5090	broad.mit.edu	37	9	128723127	128723127	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:128723127C>T	uc004bqb.2	+	6	1124	c.1008C>T	c.(1006-1008)TCC>TCT	p.S336S	PBX3_uc004bqc.2_Silent_p.S155S|PBX3_uc004bqd.2_Silent_p.S155S|PBX3_uc011lzw.1_Silent_p.S261S|PBX3_uc011lzx.1_Silent_p.S247S|PBX3_uc004bqe.2_Silent_p.S244S	NM_006195	NP_006186	P40426	PBX3_HUMAN	pre-B-cell leukemia homeobox 3 isoform 1	336					anterior compartment pattern formation|posterior compartment specification		sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						CACCAAATTCCGGTGCGTACT	0.587													4	8					0	0	0.000602214	0	0
LMX1B	4010	broad.mit.edu	37	9	129453266	129453266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:129453266G>A	uc004bqj.2	+	3	459	c.409G>A	c.(409-411)GAG>AAG	p.E137K	LMX1B_uc004bqi.2_Missense_Mutation_p.E137K|LMX1B_uc011maa.1_Missense_Mutation_p.E137K	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	137	LIM zinc-binding 2.				dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CGTGCTCAAGGAGGGCCAGCT	0.637									Nail-Patella_Syndrome				4	6					0	0	0.000602214	0	0
ST6GALNAC6	30815	broad.mit.edu	37	9	130656867	130656867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:130656867C>T	uc004bso.1	-	4	340	c.221G>A	c.(220-222)CGG>CAG	p.R74Q	ST6GALNAC6_uc004bsn.1_Missense_Mutation_p.R40Q|ST6GALNAC6_uc011man.1_Missense_Mutation_p.G10R|ST6GALNAC6_uc004bsp.1_Missense_Mutation_p.R74Q|ST6GALNAC6_uc004bsq.1_Missense_Mutation_p.R40Q|ST6GALNAC6_uc004bsr.2_Missense_Mutation_p.R40Q|ST6GALNAC6_uc010mxp.1_RNA	NM_013443	NP_038471	Q969X2	SIA7F_HUMAN	sialytransferase 7F	74	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane|plasma membrane					0						GCTACGGCCCCGCAGGGAGCC	0.577													21	27					0	0	0.00229938	0	0
GOLGA2	2801	broad.mit.edu	37	9	131029752	131029752	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:131029752G>A	uc011maw.1	-	6	478	c.465C>T	c.(463-465)AAC>AAT	p.N155N	GOLGA2_uc010mxw.2_Intron|GOLGA2_uc004bul.1_Silent_p.N56N|GOLGA2_uc004bum.1_Silent_p.N56N	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	155	Potential.					Golgi cisterna membrane	protein binding			ovary(1)	1						GATCCTTCAGGTTAGCAGACG	0.617													21	15					0	0	0.00106085	0	0
CCBL1	883	broad.mit.edu	37	9	131598112	131598112	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:131598112C>T	uc004bwh.2	-	9	986	c.801G>A	c.(799-801)AAG>AAA	p.K267K	CCBL1_uc004bwf.2_Silent_p.K301K|CCBL1_uc004bwg.2_RNA|CCBL1_uc010myn.2_Silent_p.K267K|CCBL1_uc004bwj.2_Silent_p.K217K|CCBL1_uc011mbl.1_Silent_p.K361K|CCBL1_uc004bwi.2_RNA|CCBL1_uc010myo.2_Silent_p.K224K	NM_004059	NP_004050	Q16773	KAT1_HUMAN	kynurenine aminotransferase I isoform a	267					kynurenine metabolic process|L-phenylalanine catabolic process|tryptophan catabolic process	cytosol|nucleus	1-aminocyclopropane-1-carboxylate synthase activity|cysteine-S-conjugate beta-lyase activity|glutamine-phenylpyruvate transaminase activity|kynurenine-oxoglutarate transaminase activity|L-glutamine:pyruvate aminotransferase activity|L-phenylalanine:pyruvate aminotransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamine(DB00130)|Pyridoxal Phosphate(DB00114)	TCCGCAGGTGCTTCATGATGT	0.622													7	8					0	0	0.000442599	0	0
CRAT	1384	broad.mit.edu	37	9	131860836	131860836	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:131860836G>A	uc004bxh.2	-	9	1461	c.1179C>T	c.(1177-1179)ATC>ATT	p.I393I	CRAT_uc004bxg.2_Silent_p.I372I|CRAT_uc004bxk.3_Silent_p.I372I	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	393					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	TGGCCTTCTCGATGTCGCTCT	0.617													23	52					0	0	0.000878237	0	0
FNBP1	23048	broad.mit.edu	37	9	132658145	132658145	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:132658145G>A	uc004byw.1	-	16	2037	c.1818C>T	c.(1816-1818)GTC>GTT	p.V606V	FNBP1_uc011mbv.1_Silent_p.V596V|FNBP1_uc011mbw.1_Silent_p.V601V|FNBP1_uc004bza.2_Silent_p.V540V|FNBP1_uc004byz.1_Silent_p.V577V|FNBP1_uc004byv.1_5'Flank|FNBP1_uc011mbu.1_Silent_p.V234V|FNBP1_uc004byx.1_Silent_p.V522V|FNBP1_uc004byy.1_Silent_p.V512V	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	606	Required for self-association and induction of membrane tubulation.|Interaction with FASLG.|SH3.|Interaction with PDE6G (By similarity).|Interaction with DNM1 and DNM3.|Required for interaction with TNKS.|Interaction with DNM2 and WASL.|Interaction with ARHGAP17, DAAM1, DIAPH1 and DIAPH2.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		AACAGACTTCGACATATGAAG	0.383			T	MLL	AML								5	14					0	0	0.000602214	0	0
ASS1	445	broad.mit.edu	37	9	133370261	133370261	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:133370261G>A	uc004bzm.2	+	14	1334	c.978G>A	c.(976-978)TGG>TGA	p.W326*	ASS1_uc004bzn.2_Nonsense_Mutation_p.W326*|ASS1_uc010mza.2_Nonsense_Mutation_p.W402*|ASS1_uc004bzo.2_Nonsense_Mutation_p.W307*|ASS1_uc010mzb.2_Nonsense_Mutation_p.W364*|ASS1_uc004bzp.2_Nonsense_Mutation_p.W326*|ASS1_uc010mzc.2_Nonsense_Mutation_p.W326*	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	326				FWH -> LRP (in Ref. 1; CAA25771 and 2; AAA51783).	arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	TAGGTTTCTGGCACAGCCCTG	0.597													4	18					0	0	0.000602214	0	0
DDX31	64794	broad.mit.edu	37	9	135538037	135538037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:135538037G>A	uc004cbq.1	-	2	588	c.436C>T	c.(436-438)CCC>TCC	p.P146S	DDX31_uc010mzu.1_Missense_Mutation_p.P146S|DDX31_uc004cbr.1_Missense_Mutation_p.P146S|DDX31_uc004cbs.1_Missense_Mutation_p.P146S	NM_022779	NP_073616	Q9H8H2	DDX31_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	146						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(145;2.67e-06)|Epithelial(140;7.61e-05)		TTCGCTGGGGGAGCCTCACTG	0.438													7	38					0	0	0.00198382	0	0
TSC1	7248	broad.mit.edu	37	9	135796754	135796754	+	Nonsense_Mutation	SNP	G	A	A	rs118203434		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:135796754G>A	uc004cca.2	-	8	967	c.733C>T	c.(733-735)CGA>TGA	p.R245*	TSC1_uc004ccb.3_Nonsense_Mutation_p.R245*|TSC1_uc011mcq.1_Nonsense_Mutation_p.R194*|TSC1_uc011mcr.1_Nonsense_Mutation_p.R124*|TSC1_uc011mcs.1_Nonsense_Mutation_p.R124*|TSC1_uc004ccc.1_Nonsense_Mutation_p.R245*|TSC1_uc004ccd.2_Nonsense_Mutation_p.R245*|TSC1_uc004cce.1_Nonsense_Mutation_p.R245*	NM_000368	NP_000359	Q92574	TSC1_HUMAN	tuberous sclerosis 1 protein isoform 1	245					activation of Rho GTPase activity|cell cycle arrest|cell-matrix adhesion|insulin receptor signaling pathway|negative regulation of cell proliferation|negative regulation of protein ubiquitination|negative regulation of TOR signaling cascade|negative regulation of translation|positive regulation of focal adhesion assembly|regulation of phosphoprotein phosphatase activity|regulation of stress fiber assembly|rRNA export from nucleus	cell cortex|lamellipodium|membrane|TSC1-TSC2 complex	chaperone binding|protein N-terminus binding			lung(4)|central_nervous_system(3)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|urinary_tract(1)|skin(1)|ovary(1)|bone(1)	14				OV - Ovarian serous cystadenocarcinoma(145;4.32e-08)|Epithelial(140;2.72e-06)		CTATACCTTCGAGGGTCCAGT	0.393			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				14	17					0	0	0.00074312	0	0
OBP2B	29989	broad.mit.edu	37	9	136081313	136081313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:136081313C>T	uc004ccz.2	-	6	547	c.505G>A	c.(505-507)GAA>AAA	p.E169K	OBP2B_uc010nad.2_RNA|OBP2B_uc011mcy.1_Missense_Mutation_p.E101K	NM_014581	NP_055396	Q9NPH6	OBP2B_HUMAN	odorant binding protein 2B precursor	169					chemosensory behavior|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.41e-06)|Epithelial(140;1.88e-05)		CCCTAGTGTTCGGGAACGCAG	0.617													6	37					0	0	0.000274275	0	0
COL5A1	1289	broad.mit.edu	37	9	137622280	137622280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:137622280G>A	uc004cfe.2	+	7	1505	c.1123G>A	c.(1123-1125)GAA>AAA	p.E375K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	375	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CGCTGGGGCCGAAATTCCCAC	0.617													10	8					0	0	0.000673444	0	0
FCN1	2219	broad.mit.edu	37	9	137806235	137806235	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:137806235C>T	uc004cfi.2	-	4	395	c.303G>A	c.(301-303)GAG>GAA	p.E101E		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	101					opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		GCTCACCTTTCTCTCCACGCA	0.632													9	18					0	0	0.000673444	0	0
MRPS2	51116	broad.mit.edu	37	9	138395439	138395439	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:138395439C>T	uc004cfv.3	+	4	425	c.351C>T	c.(349-351)GAC>GAT	p.D117D	MRPS2_uc004cfw.3_Silent_p.D27D|MRPS2_uc004cfx.3_Silent_p.D32D|MRPS2_uc010nat.2_Silent_p.D98D|uc004cfy.2_RNA	NM_016034	NP_057118	Q9Y399	RT02_HUMAN	mitochondrial ribosomal protein S2	117					translation	mitochondrion|small ribosomal subunit	structural constituent of ribosome				0				OV - Ovarian serous cystadenocarcinoma(145;1.46e-53)|Epithelial(140;2.04e-47)|all cancers(34;1.23e-42)		ACATCATCGACCTGGAACAGA	0.587													6	19					0	0	0.00307968	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516028	138516029	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:138516028_138516029CC>TT	uc010nbd.1	-	5	999_1000	c.745_746GG>AA	c.(745-747)GGA>AAA	p.G249K		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	249	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		ATGAATAACTCCGTTCAGATAT	0.381													21	67					0	0	6.4e-05	0	0
SNAPC4	6621	broad.mit.edu	37	9	139272788	139272788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:139272788G>A	uc004chh.2	-	21	3500	c.3491C>T	c.(3490-3492)CCT>CTT	p.P1164L		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	1164	Pro-rich.				snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGCTTCTGCAGGACTTTGGGA	0.632													5	6					0	0	0.000602214	0	0
SNAPC4	6621	broad.mit.edu	37	9	139275291	139275291	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:139275291G>A	uc004chh.2	-	19	2409	c.2400C>T	c.(2398-2400)ATC>ATT	p.I800I		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	800					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGGCAGTATCGATGTGGAACA	0.637													6	26					0	0	0.00307968	0	0
PMPCA	23203	broad.mit.edu	37	9	139313081	139313081	+	Silent	SNP	C	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:139313081C>G	uc004chl.2	+	9	1070	c.1065C>G	c.(1063-1065)CCC>CCG	p.P355P	PMPCA_uc010nbl.2_Silent_p.P255P|PMPCA_uc011mdz.1_Silent_p.P224P|PMPCA_uc004chm.1_Silent_p.P105P|PMPCA_uc004chn.1_5'Flank	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	355					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)		CTGGTGGGCCCGGCAAGGGCA	0.597													3	41					0	0	6.4e-05	0	0
GRIN1	2902	broad.mit.edu	37	9	140059743	140059743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:140059743G>A	uc004clk.2	+	19	3025	c.2695G>A	c.(2695-2697)GAC>AAC	p.D899N	GRIN1_uc004cli.1_3'UTR|GRIN1_uc004clj.1_3'UTR|GRIN1_uc004cll.2_Intron|GRIN1_uc004clm.2_Intron|GRIN1_uc004cln.2_Missense_Mutation_p.D917N|GRIN1_uc004clo.2_Intron	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	899	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	GTCCTCCAAAGACACGGTAAG	0.622													5	19					0	0	0.000602214	0	0
NDOR1	27158	broad.mit.edu	37	9	140109371	140109372	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:140109371_140109372CC>TT	uc004clw.2	+	8	1077_1078	c.966_967CC>TT	c.(964-969)CTCCAT>CTTTAT	p.H323Y	NDOR1_uc004clx.2_Missense_Mutation_p.H323Y|NDOR1_uc011mes.1_Missense_Mutation_p.H323Y|NDOR1_uc004cly.2_Missense_Mutation_p.H289Y	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	323	FAD-binding FR-type.				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		GTCTATCCCTCCATGAGCTGGA	0.629													9	15					0	0	6.4e-05	0	0
SLC34A3	142680	broad.mit.edu	37	9	140126549	140126549	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:140126549G>A	uc004cmf.1	+	3	297	c.111G>A	c.(109-111)TTG>TTA	p.L37L	SLC34A3_uc004cmc.1_5'UTR|SLC34A3_uc004cmd.1_Silent_p.L37L|SLC34A3_uc011met.1_Silent_p.L37L	NM_080877	NP_543153	Q8N130	NPT2C_HUMAN	solute carrier family 34 (sodium phosphate),	37	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|integral to membrane	sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		CTCCAGTCTTGGAGGAAGGGG	0.632													11	44					0	0	0.00185496	0	0
CRLF2	64109	broad.mit.edu	37	X	1321372	1321372	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:1321372G>A	uc004cpm.1	-	4		c.383C>T						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CTGATGCCACGAAAATCTCAC	0.547			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								19	58					0	0	0.00278032	0	0
P2RY8	286530	broad.mit.edu	37	X	1584846	1584846	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:1584846G>A	uc004cpz.2	-	2	854	c.606C>T	c.(604-606)TTC>TTT	p.F202F		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	202	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACGGGATGAGGAACAGCAGGA	0.637			T	CRLF2	B-ALL|Downs associated ALL								5	18					0	0	0.000602214	0	0
SFRS17A	8227	broad.mit.edu	37	X	1714278	1714278	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:1714278T>C	uc004cqa.2	+	3	960	c.764T>C	c.(763-765)GTT>GCT	p.V255A	SFRS17A_uc010ncx.1_Missense_Mutation_p.V255A|SFRS17A_uc004cqb.2_RNA|ASMT_uc004cqd.2_5'Flank	NM_005088	NP_005079	Q02040	AK17A_HUMAN	DNA segment on chromosome X and Y (unique) 155	255	RRM.				B cell activation|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|signal transduction	nuclear speck|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTTTTAAAGGTTTCTTTTGAT	0.537													45	106					0	0	0.00361006	0	0
DHRSX	207063	broad.mit.edu	37	X	2209608	2209608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:2209608G>A	uc004cqf.3	-	4	372	c.323C>T	c.(322-324)TCC>TTC	p.S108F		NM_145177	NP_660160	Q8N5I4	DHRSX_HUMAN	dehydrogenase/reductase (SDR family) X-linked	108							binding|oxidoreductase activity				0		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CTGCCGGATGGAAGTCATGGA	0.418													41	113					0	0	0.00361006	0	0
MXRA5	25878	broad.mit.edu	37	X	3228008	3228008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:3228008G>A	uc004crg.3	-	7	8393	c.8236C>T	c.(8236-8238)CGG>TGG	p.R2746W		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2746	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TTCCCGGGCCGGGTGTAGATG	0.597													8	27					0	0	0.000274275	0	0
MXRA5	25878	broad.mit.edu	37	X	3229307	3229307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:3229307C>T	uc004crg.3	-	7	7094	c.6937G>A	c.(6937-6939)GAA>AAA	p.E2313K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2313	Ig-like C2-type 7.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ATCCCCACTTCGTTAAAGTAG	0.552													15	64					0	0	0.000566183	0	0
MXRA5	25878	broad.mit.edu	37	X	3240459	3240459	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:3240459C>T	uc004crg.3	-	5	3424	c.3267G>A	c.(3265-3267)GAG>GAA	p.E1089E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1089						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGGATTTGCTCTCTTGGCCCT	0.478													7	29					0	0	0.000673444	0	0
MXRA5	25878	broad.mit.edu	37	X	3240517	3240517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:3240517C>T	uc004crg.3	-	5	3366	c.3209G>A	c.(3208-3210)GGA>GAA	p.G1070E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1070						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TAGCATATTTCCTCCCTGTAG	0.458													10	36					0	0	0.000673444	0	0
MXRA5	25878	broad.mit.edu	37	X	3240653	3240653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:3240653C>T	uc004crg.3	-	5	3230	c.3073G>A	c.(3073-3075)GAA>AAA	p.E1025K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1025						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ACACCTGGTTCCCCTATAGTA	0.433													17	45					0	0	0.00074312	0	0
MXRA5	25878	broad.mit.edu	37	X	3241997	3241997	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:3241997T>G	uc004crg.3	-	5	1886	c.1729A>C	c.(1729-1731)ACT>CCT	p.T577P		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	577	Ig-like C2-type 2.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GCTGGCTGAGTGGAGGGAGAC	0.522													3	6					0	0	6.4e-05	0	0
STS	412	broad.mit.edu	37	X	7171259	7171259	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:7171259C>T	uc004cry.3	+	2	279	c.34C>T	c.(34-36)CTA>TTA	p.L12L	STS_uc004crw.2_RNA|STS_uc011mhp.1_RNA|STS_uc004crx.1_RNA|STS_uc010ndm.1_RNA	NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	12					female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	CCCTTTCCTCCTACTGTTCTT	0.428									Ichthyosis				8	6					0	0	0.000274275	0	0
CLCN4	1183	broad.mit.edu	37	X	10176551	10176551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:10176551G>A	uc004csy.3	+	9	1740	c.1310G>A	c.(1309-1311)GGT>GAT	p.G437D	CLCN4_uc011mid.1_Missense_Mutation_p.G343D	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	437						early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GCTGGTGTCGGTGTTTACACG	0.527													33	59					0	0	0.00327116	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736796	12736796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:12736796G>A	uc004cuz.1	+	16	4357	c.3851G>A	c.(3850-3852)GGG>GAG	p.G1284E	FRMPD4_uc011mij.1_Missense_Mutation_p.G1276E	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1284					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CAGACAGAAGGGATGTGTCCA	0.547													14	62					0	0	0.00316338	0	0
TLR8	51311	broad.mit.edu	37	X	12937473	12937473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:12937473G>A	uc004cve.2	+	2	382	c.314G>A	c.(313-315)GGA>GAA	p.G105E	TLR8_uc004cvd.2_Missense_Mutation_p.G123E	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	105	Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						CACCAGAACGGAAATCCCGGT	0.403													21	44					0	0	0.000720815	0	0
CA5B	11238	broad.mit.edu	37	X	15794942	15794942	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:15794942T>A	uc004cxe.2	+	7	841	c.724T>A	c.(724-726)TCT>ACT	p.S242T		NM_007220	NP_009151	Q9Y2D0	CAH5B_HUMAN	carbonic anhydrase VB, mitochondrial precursor	242					one-carbon metabolic process	mitochondrion	carbonate dehydratase activity|zinc ion binding				0	Hepatocellular(33;0.183)					CCTCTCCGAGTCTGTCACCTG	0.483													13	57					0	0	0.00244969	0	0
RAI2	10742	broad.mit.edu	37	X	17818666	17818667	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:17818666_17818667CC>AA	uc004cyf.2	-	3	2034_2035	c.1464_1465GG>TT	c.(1462-1467)ATGGGA>ATTTGA	p.488_489MG>I*	RAI2_uc004cyg.2_Nonsense_Mutation_p.488_489MG>I*|RAI2_uc010nfa.2_Nonsense_Mutation_p.488_489MG>I*|RAI2_uc004cyh.3_Nonsense_Mutation_p.488_489MG>I*|RAI2_uc011miy.1_Nonsense_Mutation_p.438_439MG>I*	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	488_489					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					TCTGCATTTCCCATGGACTCTT	0.465													9	193					0	0	6.4e-05	0	0
RAI2	10742	broad.mit.edu	37	X	17820124	17820124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:17820124C>T	uc004cyf.2	-	3	577	c.7G>A	c.(7-9)GAC>AAC	p.D3N	RAI2_uc004cyg.2_Missense_Mutation_p.D3N|RAI2_uc010nfa.2_Missense_Mutation_p.D3N|RAI2_uc004cyh.3_Missense_Mutation_p.D3N|RAI2_uc011miy.1_Missense_Mutation_p.D3N	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	3					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					GACTGCAGGTCGTCCATCACT	0.478													20	56					0	0	0.00332997	0	0
BEND2	139105	broad.mit.edu	37	X	18213513	18213513	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:18213513C>T	uc004cyj.3	-	7	1237	c.1083G>A	c.(1081-1083)GTG>GTA	p.V361V	BEND2_uc010nfb.2_Intron	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	361										ovary(3)|kidney(1)|central_nervous_system(1)	5						AGTTATTTTCCACGTTGGTTT	0.323													12	35					0	0	0.00136819	0	0
SCML2	10389	broad.mit.edu	37	X	18338463	18338463	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:18338463A>T	uc004cyl.2	-	6	632	c.475T>A	c.(475-477)TTA>ATA	p.L159I	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Missense_Mutation_p.L159I|SCML2_uc011miz.1_Missense_Mutation_p.L93I	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	159	MBT 2.				anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					TTCTTAAATAATGTGGCAGAT	0.348													22	54					0	0	0.00278032	0	0
SH3KBP1	30011	broad.mit.edu	37	X	19564142	19564142	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:19564142G>C	uc004czm.2	-	15	1837	c.1521C>G	c.(1519-1521)TTC>TTG	p.F507L	SH3KBP1_uc011mje.1_Missense_Mutation_p.F246L|SH3KBP1_uc011mjf.1_Missense_Mutation_p.F269L|SH3KBP1_uc004czl.2_Missense_Mutation_p.F470L|SH3KBP1_uc010nfm.2_Intron	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	507					apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						TTGGGGAGTCGAAGATATCAG	0.438													6	31					0	0	0.000274275	0	0
DDX53	168400	broad.mit.edu	37	X	23019767	23019767	+	Silent	SNP	T	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:23019767T>G	uc004daj.2	+	1	1681	c.1593T>G	c.(1591-1593)CTT>CTG	p.L531L		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	531	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						CCCGAGGTCTTGATCTTAATG	0.388													19	51					0	0	0.00121646	0	0
FAM48B2	170067	broad.mit.edu	37	X	24329723	24329723	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:24329723G>A	uc011mjw.1	-	1	1710	c.1710C>T	c.(1708-1710)TCC>TCT	p.S570S		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	570											0						TTAGGCCAGTGGAGCCTGTCC	0.642													6	8					0	0	0.00198382	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212144	26212144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:26212144C>T	uc004dbr.2	+	2	330	c.181C>T	c.(181-183)CCT>TCT	p.P61S	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	61	Ser-rich.									ovary(3)	3						TGCCTCCATTCCTCAGGAGTC	0.532													5	19					0	0	0.000602214	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27997684	27997684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:27997684C>T	uc004dbx.1	-	1	1883	c.1768G>A	c.(1768-1770)GAG>AAG	p.E590K		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	590										ovary(3)|skin(1)	4						TCTTGGCCCTCCTCCTCGGAT	0.498													6	29					0	0	0.00116845	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973593	29973593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:29973593G>A	uc004dby.2	+	11	2255	c.1747G>A	c.(1747-1749)GAG>AAG	p.E583K		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	583	Cytoplasmic (Potential).|Interaction with NCS1.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						GCCTTTTGGGGAGCTGCAGAC	0.507													4	15					0	0	0.00024832	0	0
MAGEB1	4112	broad.mit.edu	37	X	30269117	30269117	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:30269117C>T	uc004dcc.2	+	4	827	c.507C>T	c.(505-507)AAC>AAT	p.N169N	MAGEB1_uc004dcd.2_Silent_p.N169N|MAGEB1_uc004dce.2_Silent_p.N169N	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	169	MAGE.										0						AGGAAGACAACCCTAGTGGCC	0.493													7	18					0	0	0.00198382	0	0
MAGEB1	4112	broad.mit.edu	37	X	30269510	30269510	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:30269510C>T	uc004dcc.2	+	4	1220	c.900C>T	c.(898-900)TTC>TTT	p.F300F	MAGEB1_uc004dcd.2_Silent_p.F300F|MAGEB1_uc004dce.2_Silent_p.F300F	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	300	MAGE.										0						CCCGTGACTTCCCATCCCATT	0.512													15	35					0	0	0.00074312	0	0
GK	2710	broad.mit.edu	37	X	30742289	30742289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:30742289C>T	uc004dch.3	+	19	1752	c.1573C>T	c.(1573-1575)CCA>TCA	p.P525S	GK_uc010ngj.2_Missense_Mutation_p.P519S|GK_uc004dci.3_Missense_Mutation_p.P519S|GK_uc011mjz.1_Missense_Mutation_p.P320S|GK_uc011mka.1_Missense_Mutation_p.P362S|GK_uc010ngk.2_Missense_Mutation_p.P314S	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	525					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						AACTCAATCTCCAGAAAGTGG	0.313													14	28					0	0	0.000422831	0	0
FTHL17	53940	broad.mit.edu	37	X	31089887	31089887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:31089887C>T	uc004dcl.1	-	1	287	c.184G>A	c.(184-186)GAC>AAC	p.D62N		NM_031894	NP_114100	Q9BXU8	FHL17_HUMAN	ferritin, heavy polypeptide-like 17	62	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport		ferric iron binding|oxidoreductase activity				0						TCCATTTTGTCGTCCGACAGG	0.577													19	35					0	0	0.00188189	0	0
DMD	1756	broad.mit.edu	37	X	31792178	31792178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:31792178C>T	uc004dda.1	-	51	7685	c.7441G>A	c.(7441-7443)GAA>AAA	p.E2481K	DMD_uc004dcr.1_Missense_Mutation_p.E21K|DMD_uc004dcs.1_Missense_Mutation_p.E21K|DMD_uc004dct.1_Missense_Mutation_p.E21K|DMD_uc004dcu.1_Missense_Mutation_p.E21K|DMD_uc004dcv.1_Missense_Mutation_p.E21K|DMD_uc004dcw.2_Missense_Mutation_p.E1137K|DMD_uc004dcx.2_Missense_Mutation_p.E1140K|DMD_uc004dcz.2_Missense_Mutation_p.E2358K|DMD_uc004dcy.1_Missense_Mutation_p.E2477K|DMD_uc004ddb.1_Missense_Mutation_p.E2473K|DMD_uc004ddd.1_Missense_Mutation_p.E21K	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2481	Spectrin 17.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCGGTAAGTTCTGTCCAAGCC	0.458													28	34					0	0	0.00178596	0	0
FAM47A	158724	broad.mit.edu	37	X	34148365	34148365	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:34148365C>T	uc004ddg.2	-	1	2064	c.2031G>A	c.(2029-2031)AGG>AGA	p.R677R		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	677										ovary(4)|central_nervous_system(1)	5						TGTGGAATTTCCTGCCCCAGT	0.433													15	50					0	0	0.000422831	0	0
FAM47A	158724	broad.mit.edu	37	X	34150032	34150032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:34150032C>T	uc004ddg.2	-	1	397	c.364G>A	c.(364-366)GAA>AAA	p.E122K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	122										ovary(4)|central_nervous_system(1)	5						AGCTGGGCTTCCACTTGCTCT	0.542													18	17					0	0	0.000958276	0	0
MAGEB16	139604	broad.mit.edu	37	X	35821024	35821024	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:35821024G>A	uc010ngt.1	+	2	990	c.711G>A	c.(709-711)GGG>GGA	p.G237G		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	237	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						TATATTCTGGGAAGAAGCACT	0.493													7	15					0	0	0.00198382	0	0
RPGR	6103	broad.mit.edu	37	X	38147243	38147243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:38147243C>T	uc004ded.1	-	14	1792	c.1624G>A	c.(1624-1626)GAT>AAT	p.D542N	RPGR_uc004deb.2_Missense_Mutation_p.D542N|RPGR_uc004dea.2_RNA|RPGR_uc004dec.2_Intron	NM_001034853	NP_001030025	Q92834	RPGR_HUMAN	retinitis pigmentosa GTPase regulator isoform C	542	Glu-rich.				intracellular protein transport|response to stimulus|visual perception	Golgi apparatus|photoreceptor outer segment	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						TCACTATCATCGTTTTCAGTA	0.358													14	48					0	0	0.000566183	0	0
TSPAN7	7102	broad.mit.edu	37	X	38525511	38525511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:38525511G>A	uc004deg.3	+	2	287	c.218G>A	c.(217-219)GGC>GAC	p.G73D	TSPAN7_uc011mkj.1_Missense_Mutation_p.G99D|TSPAN7_uc011mkk.1_Missense_Mutation_p.G90D|TSPAN7_uc004deh.2_5'UTR	NM_004615	NP_004606	P41732	TSN7_HUMAN	tetraspanin 7	73	Helical; (Potential).				interspecies interaction between organisms	integral to plasma membrane				ovary(1)	1						GTTGTCTTTGGCCTGTTTGGA	0.443													10	54					0	0	0.00136819	0	0
MED14	9282	broad.mit.edu	37	X	40534535	40534535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:40534535G>A	uc004dex.3	-	22	3099	c.2959C>T	c.(2959-2961)CCT>TCT	p.P987S		NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	987					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						CCTCCTATAGGAGAAGGGGGA	0.428													10	22					0	0	0.000442599	0	0
CASK	8573	broad.mit.edu	37	X	41646436	41646436	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:41646436G>A	uc004dfl.3	-	3	319	c.273C>T	c.(271-273)TTC>TTT	p.F91F	CASK_uc004dfm.3_Silent_p.F91F|CASK_uc004dfn.3_Silent_p.F91F	NM_003688	NP_003679	O14936	CSKP_HUMAN	calcium/calmodulin-dependent serine protein	91	Protein kinase.				cell adhesion	actin cytoskeleton|cytoplasm|nucleus|plasma membrane	ATP binding|calmodulin binding|guanylate kinase activity|protein serine/threonine kinase activity			ovary(3)|lung(2)|stomach(1)	6						CTCACAATTCGAAAACCATGT	0.358													26	70					0	0	0.00395357	0	0
CXorf36	79742	broad.mit.edu	37	X	45011044	45011044	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:45011044G>A	uc004dgg.2	-	5	1230	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I		NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	385						extracellular region				lung(1)	1						ACTGAACAAGGATGGAGTCTA	0.587													5	22					0	0	0.000602214	0	0
RBM10	8241	broad.mit.edu	37	X	47035920	47035920	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:47035920C>T	uc004dhf.2	+	7	977	c.598C>T	c.(598-600)CAG>TAG	p.Q200*	RBM10_uc004dhe.1_Missense_Mutation_p.P165L|RBM10_uc004dhg.2_Nonsense_Mutation_p.Q123*|RBM10_uc004dhh.2_Nonsense_Mutation_p.Q200*|RBM10_uc010nhq.2_Nonsense_Mutation_p.Q123*|RBM10_uc004dhi.2_Nonsense_Mutation_p.Q265*	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	200	RRM 1.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						CATCCTGGGCCAGAAGGTGTC	0.572													9	19					0	0	0.000673444	0	0
ARAF	369	broad.mit.edu	37	X	47426506	47426506	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:47426506C>T	uc011mlq.1	+	9	982	c.849C>T	c.(847-849)TCC>TCT	p.S283S	ARAF_uc011mln.1_RNA|ARAF_uc011mlo.1_Silent_p.S149S|ARAF_uc011mlp.1_Silent_p.S283S|ARAF_uc004dic.1_Silent_p.S64S	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	283					intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	AGCGGAAGTCCTTGGCCGATG	0.627													6	7					0	0	0.00307968	0	0
MAGIX	79917	broad.mit.edu	37	X	49021369	49021369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:49021369C>T	uc010nin.1	+	4	495	c.448C>T	c.(448-450)CCG>TCG	p.P150S	MAGIX_uc010nio.1_Intron|MAGIX_uc004dmt.2_Intron|MAGIX_uc004dmu.2_Missense_Mutation_p.P91S|MAGIX_uc004dmw.2_Missense_Mutation_p.P83S	NM_024859	NP_079135	Q9H6Y5	MAGIX_HUMAN	MAGI family member, X-linked isoform a	150	PDZ.										0						TGGGGACACTCCGCTGGCCGT	0.642													9	18					0	0	0.000978159	0	0
CACNA1F	778	broad.mit.edu	37	X	49063015	49063015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:49063015C>T	uc004dnb.2	-	46	5524	c.5462G>A	c.(5461-5463)GGC>GAC	p.G1821D	CACNA1F_uc010nip.2_Missense_Mutation_p.G1810D	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1821	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	ATGATAGGTGCCTGGGATGGG	0.622													9	19					0	0	0.00136819	0	0
CCNB3	85417	broad.mit.edu	37	X	50052923	50052923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:50052923C>T	uc004dox.3	+	6	2052	c.1754C>T	c.(1753-1755)TCG>TTG	p.S585L	CCNB3_uc004doy.2_Missense_Mutation_p.S585L|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	585					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					ACCAAGACATCGTTGTCTTTA	0.398													5	9					0	0	0.000602214	0	0
CCNB3	85417	broad.mit.edu	37	X	50054033	50054033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:50054033C>T	uc004dox.3	+	6	3162	c.2864C>T	c.(2863-2865)CCC>CTC	p.P955L	CCNB3_uc004doy.2_Missense_Mutation_p.P955L|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	955					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					CAAGAGAGTCCCACCTACAAG	0.483													4	21					0	0	0.00024832	0	0
CCNB3	85417	broad.mit.edu	37	X	50089709	50089709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:50089709G>A	uc004dox.3	+	10	4011	c.3713G>A	c.(3712-3714)CGA>CAA	p.R1238Q	CCNB3_uc004doy.2_Missense_Mutation_p.R1238Q|CCNB3_uc004doz.2_Missense_Mutation_p.R134Q|CCNB3_uc010njq.2_Missense_Mutation_p.R130Q|CCNB3_uc004dpa.2_Missense_Mutation_p.R77Q	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1238					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AATTATCAGCGATCTGAGGTA	0.463													17	44					0	0	0.00074312	0	0
DGKK	139189	broad.mit.edu	37	X	50133404	50133404	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:50133404C>T	uc010njr.1	-	12	1908	c.1848G>A	c.(1846-1848)TGG>TGA	p.W616*		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	616	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					TCATCACACTCCATCTGAAAT	0.388													11	41					0	0	0.000978159	0	0
DGKK	139189	broad.mit.edu	37	X	50167291	50167291	+	Silent	SNP	A	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:50167291A>G	uc010njr.1	-	2	771	c.711T>C	c.(709-711)TAT>TAC	p.Y237Y		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	237	PH.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					GAACCAGAAAATATCTAAGCT	0.403													14	20					0	0	0.000422831	0	0
SSX7	280658	broad.mit.edu	37	X	52682505	52682505	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:52682505G>A	uc004dqx.1	-	2	177	c.18C>T	c.(16-18)GCC>GCT	p.A6A		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	6					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					TCCTTGCAAAGGCGTCGTCTC	0.552													26	106					0	0	0.00127121	0	0
TRO	7216	broad.mit.edu	37	X	54954169	54954169	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:54954169C>T	uc004dtq.2	+	11	1940	c.1833C>T	c.(1831-1833)TCC>TCT	p.S611S	TRO_uc004dts.2_Silent_p.S611S|TRO_uc004dtr.2_Silent_p.S611S|TRO_uc004dtt.2_RNA|TRO_uc004dtu.2_RNA|TRO_uc004dtv.2_Silent_p.S214S|TRO_uc011mok.1_Silent_p.S142S|TRO_uc004dtw.2_Silent_p.S214S|TRO_uc004dtx.2_5'UTR	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	611	MAGE.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						GCTTGCGCTCCTACCACGAGA	0.483													8	15					0	0	0.000274275	0	0
OPHN1	4983	broad.mit.edu	37	X	67273531	67273531	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:67273531C>T	uc004dww.3	-	22	2574	c.2280G>A	c.(2278-2280)AAG>AAA	p.K760K	OPHN1_uc011mpg.1_Silent_p.K652K	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	760	Pro-rich.				axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						CAATATCTGGCTTTGGTTCTG	0.547													5	19					0	0	0.000602214	0	0
OPHN1	4983	broad.mit.edu	37	X	67316726	67316726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:67316726C>T	uc004dww.3	-	19	1966	c.1672G>A	c.(1672-1674)GAG>AAG	p.E558K	OPHN1_uc011mpg.1_Missense_Mutation_p.E558K	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	558	Rho-GAP.				axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						CCAAAGTGCTCGATTAGTATT	0.473													8	34					0	0	0.00307968	0	0
MED12	9968	broad.mit.edu	37	X	70339657	70339657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:70339657C>T	uc004dyy.2	+	3	525	c.326C>T	c.(325-327)TCC>TTC	p.S109F	MED12_uc011mpq.1_Missense_Mutation_p.S109F|MED12_uc004dyz.2_Missense_Mutation_p.S109F|MED12_uc004dza.2_5'Flank	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	109					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					ACTGCACGATCCCAGAGTGCC	0.493													8	11					0	0	0.000442599	0	0
ERCC6L	54821	broad.mit.edu	37	X	71427393	71427393	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:71427393C>T	uc004eaq.1	-	2	1321	c.1224G>A	c.(1222-1224)AAG>AAA	p.K408K	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Silent_p.K285K	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	408					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					CACACAGCTTCTTTAAGACAC	0.443													35	34					0	0	0.00327116	0	0
PHKA1	5255	broad.mit.edu	37	X	71840645	71840645	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:71840645G>A	uc004eax.3	-	19	2368	c.2067C>T	c.(2065-2067)TTC>TTT	p.F689F	PHKA1_uc004eay.3_Silent_p.F689F|PHKA1_uc011mqi.1_Intron	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	689					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					CAGCAGCTTGGAACCGATCTA	0.512													11	11					0	0	0.00136819	0	0
PHKA1	5255	broad.mit.edu	37	X	71870317	71870317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:71870317C>T	uc004eax.3	-	13	1548	c.1247G>A	c.(1246-1248)GGA>GAA	p.G416E	PHKA1_uc004eay.3_Missense_Mutation_p.G416E|PHKA1_uc011mqi.1_Missense_Mutation_p.G416E	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	416					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					GGCTAAAAATCCCTAAAGAAA	0.398													7	18					0	0	0.000442599	0	0
TSIX	9383	broad.mit.edu	37	X	73045047	73045047	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:73045047C>T	uc004ebn.2	+	1		c.33008C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CATGTGTTTTCGTTTCTGATA	0.259													12	22					0	0	0.000978159	0	0
XIST	7503	broad.mit.edu	37	X	73053139	73053139	+	RNA	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:73053139G>A	uc004ebm.1	-	3		c.11507C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						ATTCTCAAAGGGAAAGATATG	0.433													18	28					0	0	0.00074312	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963193	73963193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:73963193C>T	uc004eby.2	-	3	1816	c.1199G>A	c.(1198-1200)GGA>GAA	p.G400E		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	400					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ATTATCCTTTCCATCTTTCTT	0.443													26	53					0	0	0.00127121	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963427	73963427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:73963427C>T	uc004eby.2	-	3	1582	c.965G>A	c.(964-966)CGA>CAA	p.R322Q		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	322					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AGTCTTGTCTCGAACATTGTC	0.443													11	30					0	0	0.00185496	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963788	73963788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:73963788C>T	uc004eby.2	-	3	1221	c.604G>A	c.(604-606)GAC>AAC	p.D202N		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	202					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AGGAGCTGGTCTGAGAGCAGC	0.453													10	18					0	0	0.000442599	0	0
MAGEE1	57692	broad.mit.edu	37	X	75649401	75649401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:75649401C>T	uc004ecm.1	+	1	1285	c.1078C>T	c.(1078-1080)CCC>TCC	p.P360S		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	360	Pro-rich.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						ACTGCCAATCCCCGGTGAGGG	0.672													7	16					0	0	0.00198382	0	0
CYSLTR1	10800	broad.mit.edu	37	X	77528275	77528275	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:77528275C>T	uc004edb.2	-	3	1369	c.969G>A	c.(967-969)AAG>AAA	p.K323K	CYSLTR1_uc010nma.2_Silent_p.K323K|CYSLTR1_uc010nmb.2_Silent_p.K323K	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	323	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	AAGAGGCCTTCTTTCTGGGTA	0.368													14	13					0	0	0.00316338	0	0
P2RY10	27334	broad.mit.edu	37	X	78216316	78216316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:78216316C>T	uc004ede.2	+	4	668	c.299C>T	c.(298-300)CCT>CTT	p.P100L	P2RY10_uc004edf.2_Missense_Mutation_p.P100L	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	100	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						CACCACTGGCCTTTCCAGAGA	0.448													9	37					0	0	0.000978159	0	0
P2RY10	27334	broad.mit.edu	37	X	78216954	78216954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:78216954C>T	uc004ede.2	+	4	1306	c.937C>T	c.(937-939)CGT>TGT	p.R313C	P2RY10_uc004edf.2_Missense_Mutation_p.R313C	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	313	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						TTCAGAGTTTCGTGACCAACT	0.458													15	62					0	0	0.00244969	0	0
GPR174	84636	broad.mit.edu	37	X	78427049	78427049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:78427049C>T	uc004edg.1	+	1	581	c.545C>T	c.(544-546)TCC>TTC	p.S182F		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	182	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						CTGGCCCAGTCCGTTGTTATG	0.448										HNSCC(63;0.18)			4	16					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	X	80185634	80185634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:80185634G>A	uc004eec.1	+	1	707	c.533G>A	c.(532-534)GGA>GAA	p.G178E						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		TGGACAGCAGGAAACAGTAAC	0.493													34	38					0	0	0.00283554	0	0
CYLC1	1538	broad.mit.edu	37	X	83128246	83128246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:83128246C>T	uc004eei.1	+	4	551	c.530C>T	c.(529-531)TCC>TTC	p.S177F	CYLC1_uc004eeh.1_Missense_Mutation_p.S176F	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	177					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AAGTCAAAATCCAGTTCAGAA	0.313													4	19					0	0	0.00024832	0	0
CYLC1	1538	broad.mit.edu	37	X	83128355	83128355	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:83128355C>T	uc004eei.1	+	4	660	c.639C>T	c.(637-639)TTC>TTT	p.F213F	CYLC1_uc004eeh.1_Silent_p.F212F	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	213					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						ACACTGAATTCCTACATACAA	0.303													11	6					0	0	0.00136819	0	0
CYLC1	1538	broad.mit.edu	37	X	83128740	83128740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:83128740G>A	uc004eei.1	+	4	1045	c.1024G>A	c.(1024-1026)GAT>AAT	p.D342N	CYLC1_uc004eeh.1_Missense_Mutation_p.D341N	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	342	2.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AGACTCaaaggatgaaaggaa	0.239													5	14					0	0	0.000602214	0	0
SATL1	340562	broad.mit.edu	37	X	84363411	84363411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:84363411C>T	uc011mqx.1	-	1	564	c.564G>A	c.(562-564)ATG>ATA	p.M188I	SATL1_uc004een.2_Missense_Mutation_p.M188I	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	1							N-acetyltransferase activity			breast(2)	2						CTGGTGGACTCATGTTTGGTT	0.557											OREG0019887	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	49					0	0	0.00074312	0	0
SATL1	340562	broad.mit.edu	37	X	84363957	84363957	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:84363957C>T	uc011mqx.1	-	1	18	c.18G>A	c.(16-18)ACG>ACA	p.T6T	SATL1_uc004een.2_Silent_p.T6T	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							N-acetyltransferase activity			breast(2)	2						TTGATTGGTTCGTGCCTGATT	0.478											OREG0019887	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	1					0	0	0.00024832	0	0
CPXCR1	53336	broad.mit.edu	37	X	88009268	88009268	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:88009268T>A	uc004efd.3	+	3	1112	c.853T>A	c.(853-855)TTT>ATT	p.F285I	CPXCR1_uc004efc.3_Missense_Mutation_p.F285I	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	285						intracellular	zinc ion binding			ovary(3)	3						TGGAAGGCTTTTTAACACTTA	0.303													5	28					0	0	0.00198382	0	0
LOC442459	442459	broad.mit.edu	37	X	98974669	98974669	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:98974669C>T	uc011mrd.1	-	8		c.1674G>A				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						ACTGCTTGTTCCTCCATCAAA	0.453													4	14					0	0	0.00024832	0	0
SRPX2	27286	broad.mit.edu	37	X	99920601	99920601	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:99920601C>A	uc004egb.2	+	7	1208	c.728C>A	c.(727-729)GCC>GAC	p.A243D		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	243	HYR.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						CGTTACACTGCCTATGACCGA	0.483													43	45					6.27289e-28	1.76539e-27	0.00361006	1	0
SYTL4	94121	broad.mit.edu	37	X	99955922	99955922	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:99955922C>T	uc004egd.3	-	7	866	c.510G>A	c.(508-510)AAG>AAA	p.K170K	SYTL4_uc010nnc.2_Silent_p.K170K|SYTL4_uc004ege.3_Silent_p.K170K|SYTL4_uc004egf.3_Silent_p.K170K|SYTL4_uc004egg.3_Silent_p.K170K	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	170					exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTGAATGATCTTTCTTCCTG	0.403													65	61					0	0	0.00361006	0	0
BTK	695	broad.mit.edu	37	X	100608324	100608324	+	Missense_Mutation	SNP	T	C	C	rs128621206		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:100608324T>C	uc004ehg.2	-	18	1959	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	BTK_uc004ehf.2_Missense_Mutation_p.E89G|BTK_uc010nnh.2_RNA|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_RNA|BTK_uc010nnj.2_RNA|BTK_uc010nnk.2_RNA|BTK_uc010nnl.2_Missense_Mutation_p.E65G|BTK_uc010nnm.2_Missense_Mutation_p.E159G|BTK_uc010nnn.2_Missense_Mutation_p.E413G|BTK_uc010nno.2_Missense_Mutation_p.E623G	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	589	Protein kinase.		E -> G (in XLA; moderate; interferes with substrate binding).|E -> D (in XLA).|E -> K (in XLA).		calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						GGAGTAAATTTCCCACATCAA	0.433									Agammaglobulinemia_X-linked				30	78					0	0	0.00209593	0	0
ZMAT1	84460	broad.mit.edu	37	X	101141652	101141652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:101141652G>A	uc004eim.2	-	1	3542	c.44C>T	c.(43-45)TCT>TTT	p.S15F	ZMAT1_uc011mrl.1_Missense_Mutation_p.S186F|ZMAT1_uc004ein.2_Missense_Mutation_p.S15F|ZMAT1_uc011mrm.1_Missense_Mutation_p.S15F	NM_032441	NP_115817	Q5H9K5	ZMAT1_HUMAN	zinc finger, matrin type 1 isoform 3	15						nucleus	zinc ion binding			ovary(1)	1						CATATCTAAAGATGTAAAAGC	0.323													9	15					0	0	0.000978159	0	0
TCEAL6	158931	broad.mit.edu	37	X	101396161	101396161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:101396161C>T	uc004eiq.2	-	3	304	c.143G>A	c.(142-144)CGA>CAA	p.R48Q		NM_001006938	NP_001006939	Q6IPX3	TCAL6_HUMAN	transcription elongation factor A (SII)-like 6	48	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						ctcagcctttcgctttccctc	0.194													9	18					0	0	0.000274275	0	0
NXF3	56000	broad.mit.edu	37	X	102337212	102337212	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:102337212C>T	uc004eju.2	-	9	932	c.861G>A	c.(859-861)ACG>ACA	p.T287T	NXF3_uc010noi.1_Silent_p.T137T|NXF3_uc011mrw.1_Silent_p.T287T|NXF3_uc011mrx.1_Silent_p.T198T	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	287						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CCGAGAAGGTCGTGCACACTG	0.542													34	50					0	0	0.00148497	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011477	105011477	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:105011477G>A	uc004elz.1	+	11	2640	c.1884G>A	c.(1882-1884)ACG>ACA	p.T628T		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	628	Cytoplasmic (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						TACCAGCCACGACCTTGCCAG	0.473													15	41					0	0	0.000958276	0	0
CLDN2	9075	broad.mit.edu	37	X	106171926	106171926	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:106171926G>T	uc004emq.1	+	2	987	c.468G>T	c.(466-468)ATG>ATT	p.M156I	MORC4_uc004emp.3_Intron|CLDN2_uc004emt.1_Missense_Mutation_p.M156I	NM_020384	NP_065117	P57739	CLD2_HUMAN	claudin 2	156	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						CTGACAGCATGAAATTTGAGA	0.478													15	56					0.000422831	0.00117769	0.000422831	1	0
COL4A6	1288	broad.mit.edu	37	X	107402885	107402885	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:107402885T>A	uc004enw.3	-	44	4725	c.4622A>T	c.(4621-4623)AAA>ATA	p.K1541I	COL4A6_uc004env.3_Missense_Mutation_p.K1540I|COL4A6_uc011msn.1_Missense_Mutation_p.K1516I|COL4A6_uc010npk.2_Missense_Mutation_p.K1483I|COL4A6_uc011msm.1_Missense_Mutation_p.K75I|COL4A6_uc010npj.2_Missense_Mutation_p.K20I	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1541	Collagen IV NC1.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CCAGTAAGATTTATCATTGCG	0.577									Alport_syndrome_with_Diffuse_Leiomyomatosis				16	72					0	0	0.00074312	0	0
COL4A6	1288	broad.mit.edu	37	X	107422581	107422581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:107422581G>A	uc004enw.3	-	26	2325	c.2222C>T	c.(2221-2223)CCA>CTA	p.P741L	COL4A6_uc004env.3_Missense_Mutation_p.P740L|COL4A6_uc011msn.1_Missense_Mutation_p.P740L|COL4A6_uc010npk.2_Missense_Mutation_p.P740L	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	741	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						AGGTAAGCCTGGACTGCCAAT	0.537									Alport_syndrome_with_Diffuse_Leiomyomatosis				8	6					0	0	0.00307968	0	0
COL4A6	1288	broad.mit.edu	37	X	107431774	107431774	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:107431774C>T	uc004enw.3	-	21	1666	c.1563G>A	c.(1561-1563)GGG>GGA	p.G521G	COL4A6_uc004env.3_Silent_p.G520G|COL4A6_uc011msn.1_Silent_p.G520G|COL4A6_uc010npk.2_Silent_p.G520G	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	521	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CCTGTGCACCCCCAGAGCCTC	0.582									Alport_syndrome_with_Diffuse_Leiomyomatosis				6	18					0	0	0.000274275	0	0
CAPN6	827	broad.mit.edu	37	X	110490610	110490610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:110490610G>A	uc004epc.1	-	12	1897	c.1729C>T	c.(1729-1731)CCT>TCT	p.P577S	CAPN6_uc011msu.1_Missense_Mutation_p.P322S	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	577	C2.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						ACTATAATAGGAATGTCAGTG	0.428													25	73					0	0	0.00106085	0	0
TRPC5	7224	broad.mit.edu	37	X	111025181	111025181	+	Silent	SNP	G	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:111025181G>T	uc004epl.1	-	8	3001	c.2082C>A	c.(2080-2082)CGC>CGA	p.R694R	TRPC5_uc004epm.1_Silent_p.R694R	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	694	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TTCTCAAGTTGCGCCTTCTCC	0.313													25	53					3.73148e-12	1.04781e-11	0.00127121	1	0
Unknown	0	broad.mit.edu	37	X	114953504	114953504	+	RNA	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:114953504C>T	uc004eqf.2	-	1		c.161G>A								full-length cDNA clone CS0DJ015YA07 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).																		TTAATATGATCGTTGTTCTCA	0.478													12	5					0	0	0.00185496	0	0
SLC6A14	11254	broad.mit.edu	37	X	115590037	115590037	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:115590037G>A	uc004eqi.2	+	14	1949	c.1845G>A	c.(1843-1845)GGG>GGA	p.G615G		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	615	Cytoplasmic (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	AACATCGTGGGGAAAGATATA	0.398													13	45					0	0	0.00185496	0	0
KIAA1210	57481	broad.mit.edu	37	X	118223552	118223552	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:118223552C>T	uc004era.3	-	11	1641	c.1641G>A	c.(1639-1641)TTG>TTA	p.L547L		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	547										ovary(4)|skin(1)	5						CACACCCACTCAATCCTGAAA	0.483													42	103					0	0	0.00361006	0	0
GRIA3	2892	broad.mit.edu	37	X	122387391	122387391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:122387391G>A	uc004etq.3	+	4	799	c.506G>A	c.(505-507)CGA>CAA	p.R169Q	GRIA3_uc004etr.3_Missense_Mutation_p.R169Q|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.R153Q	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	169	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	GACACAGAACGAGGTAAGAAG	0.433													8	20					0	0	0.00136819	0	0
XIAP	331	broad.mit.edu	37	X	123034363	123034363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:123034363C>T	uc010nqu.2	+	6	1246	c.1120C>T	c.(1120-1122)CCT>TCT	p.P374S	XIAP_uc004etx.2_Missense_Mutation_p.P374S|XIAP_uc010nqv.2_5'UTR	NM_001167	NP_001158	P98170	XIAP_HUMAN	baculoviral IAP repeat-containing protein 4	374					anti-apoptosis|apoptosis|induction of apoptosis by intracellular signals|response to DNA damage stimulus	cytosol	caspase inhibitor activity|ligase activity|protein binding|zinc ion binding			ovary(1)|lung(1)	2						CTTCCAAAATCCTATGGTACA	0.299									X-linked_Lymphoproliferative_syndrome				14	35					0	0	0.000566183	0	0
SH2D1A	4068	broad.mit.edu	37	X	123480514	123480514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:123480514C>T	uc004euf.3	+	1	367	c.22C>T	c.(22-24)CAT>TAT	p.H8Y	SH2D1A_uc004euh.3_Missense_Mutation_p.H8Y|SH2D1A_uc004eug.3_RNA|SH2D1A_uc010nqw.2_RNA|SH2D1A_uc004eui.3_RNA|SH2D1A_uc010nqx.2_Intron	NM_002351	NP_002342	O60880	SH21A_HUMAN	SH2 domain protein 1A isoform 1	8	SH2.		H -> D (in XLP1).		cell-cell signaling|cellular defense response	cytoplasm	SH3/SH2 adaptor activity				0						GGCTGTGTATCATGGCAAAAT	0.602									X-linked_Lymphoproliferative_syndrome				11	28					0	0	0.00136819	0	0
ODZ1	10178	broad.mit.edu	37	X	123519762	123519762	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:123519762C>T	uc004euj.2	-	28	5884	c.5820G>A	c.(5818-5820)CCG>CCA	p.P1940P	ODZ1_uc011muj.1_Silent_p.P1946P|ODZ1_uc010nqy.2_Silent_p.P1947P	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1940	YD 10.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGCTACTGTCCGGTGGGGTGT	0.507													6	16					0	0	0.00198382	0	0
ODZ1	10178	broad.mit.edu	37	X	123525979	123525979	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:123525979C>A	uc004euj.2	-	27	5654	c.5590G>T	c.(5590-5592)GAA>TAA	p.E1864*	ODZ1_uc011muj.1_Nonsense_Mutation_p.E1870*|ODZ1_uc010nqy.2_Nonsense_Mutation_p.E1871*	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1864	Extracellular (Potential).|YD 6.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGGTCATATTCCATTTTTTCA	0.378													12	25					5.16669e-11	1.44831e-10	0.000978159	1	0
ODZ1	10178	broad.mit.edu	37	X	123556265	123556265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:123556265C>T	uc004euj.2	-	23	4371	c.4307G>A	c.(4306-4308)AGC>AAC	p.S1436N	ODZ1_uc011muj.1_Missense_Mutation_p.S1442N|ODZ1_uc010nqy.2_Missense_Mutation_p.S1443N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1436	NHL 4.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GAGCAGCCCGCTGTGGGAGAC	0.537													10	33					0	0	0.00185496	0	0
ODZ1	10178	broad.mit.edu	37	X	123637533	123637533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:123637533C>T	uc004euj.2	-	19	3386	c.3322G>A	c.(3322-3324)GAA>AAA	p.E1108K	ODZ1_uc011muj.1_Missense_Mutation_p.E1107K|ODZ1_uc010nqy.2_Missense_Mutation_p.E1108K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1108	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GGGCACGTTTCATATTCATAT	0.373													8	49					0	0	0.000274275	0	0
ODZ1	10178	broad.mit.edu	37	X	123779112	123779113	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:123779112_123779113CC>TT	uc004euj.2	-	10	1820_1821	c.1756_1757GG>AA	c.(1756-1758)GGG>AAG	p.G586K	ODZ1_uc011muj.1_Missense_Mutation_p.G585K|ODZ1_uc010nqy.2_Missense_Mutation_p.G586K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	586	EGF-like 2.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ACACTCTGGCCCCTTCCAGCCA	0.52													19	84					0	0	6.4e-05	0	0
ODZ1	10178	broad.mit.edu	37	X	123839007	123839007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:123839007G>A	uc004euj.2	-	5	935	c.871C>T	c.(871-873)CCT>TCT	p.P291S	ODZ1_uc011muj.1_Missense_Mutation_p.P291S|ODZ1_uc010nqy.2_Missense_Mutation_p.P291S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	291	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GGCCTGGGAGGGGGCGAGTAC	0.527													10	45					0	0	0.000673444	0	0
OCRL	4952	broad.mit.edu	37	X	128723830	128723831	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:128723830_128723831CC>TT	uc004euq.2	+	23	2643_2644	c.2478_2479CC>TT	c.(2476-2481)TCCCAG>TCTTAG	p.Q827*	OCRL_uc004eur.2_Nonsense_Mutation_p.Q819*|OCRL_uc010nrb.2_Intron	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	827	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						AGGTGATCTCCCAGCTTCCGAG	0.396													8	34					0	0	6.4e-05	0	0
ZNF280C	55609	broad.mit.edu	37	X	129377577	129377577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:129377577G>A	uc004evm.2	-	5	495	c.341C>T	c.(340-342)TCT>TTT	p.S114F	ZNF280C_uc010nrf.1_Missense_Mutation_p.S114F	NM_017666	NP_060136	Q8ND82	Z280C_HUMAN	zinc finger protein 280C	114	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)	3						GCTTTGTGAAGATTTAGATAC	0.393													17	58					0	0	0.000566183	0	0
IGSF1	3547	broad.mit.edu	37	X	130411080	130411080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:130411080C>T	uc004ewd.2	-	14	2679	c.2441G>A	c.(2440-2442)GGA>GAA	p.G814E	IGSF1_uc004ewe.3_Missense_Mutation_p.G808E|IGSF1_uc004ewf.2_Missense_Mutation_p.G794E	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	814	Extracellular (Potential).|Ig-like C2-type 8.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TATTTCACTTCCATCTTTGTA	0.522													35	112					0	0	0.00327116	0	0
IGSF1	3547	broad.mit.edu	37	X	130413299	130413299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:130413299C>T	uc004ewd.2	-	10	1901	c.1663G>A	c.(1663-1665)GGA>AGA	p.G555R	IGSF1_uc004ewe.3_Missense_Mutation_p.G544R|IGSF1_uc004ewf.2_Missense_Mutation_p.G535R	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	555	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGAGCTGTTCCCAGCAACCAG	0.582													10	24					0	0	0.00136819	0	0
GPC3	2719	broad.mit.edu	37	X	132887946	132887946	+	Nonsense_Mutation	SNP	G	A	A	rs104894855		TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:132887946G>A	uc004exe.1	-	3	785	c.595C>T	c.(595-597)CGA>TGA	p.R199*	GPC3_uc004exd.1_Nonsense_Mutation_p.R71*|GPC3_uc010nrn.1_Nonsense_Mutation_p.R199*|GPC3_uc011mvh.1_Nonsense_Mutation_p.R183*|GPC3_uc010nro.1_Nonsense_Mutation_p.R145*|GPC3_uc010nrp.1_Nonsense_Mutation_p.R71*	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	199						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					CTTGCTCCTCGGAGGCACTCA	0.478			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				20	52					0	0	0.00188189	0	0
ZNF449	203523	broad.mit.edu	37	X	134483107	134483107	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:134483107C>T	uc004eys.2	+	3	592	c.427C>T	c.(427-429)CTA>TTA	p.L143L	ZNF449_uc004eyq.1_3'UTR|ZNF449_uc004eyt.2_Silent_p.L23L	NM_152695	NP_689908	Q6P9G9	ZN449_HUMAN	zinc finger protein 449	143					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AACCATGCACCTAGAGTCACC	0.572													12	32					0	0	0.00136819	0	0
DDX26B	203522	broad.mit.edu	37	X	134706880	134706880	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:134706880C>T	uc004eyw.3	+	11	1791	c.1428C>T	c.(1426-1428)ATC>ATT	p.I476I	DDX26B_uc004eyx.3_Silent_p.I77I	NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	476											0	Acute lymphoblastic leukemia(192;6.56e-05)					TGAAAGAAATCACAGGGGAAA	0.358													17	41					0	0	0.00074312	0	0
GPR112	139378	broad.mit.edu	37	X	135431816	135431816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:135431816C>T	uc004ezu.1	+	6	6242	c.5951C>T	c.(5950-5952)CCT>CTT	p.P1984L	GPR112_uc010nsb.1_Missense_Mutation_p.P1779L|GPR112_uc010nsc.1_Missense_Mutation_p.P1751L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1984	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCTGTAACTCCTGGGACCACA	0.433													10	25					0	0	0.000442599	0	0
GPR101	83550	broad.mit.edu	37	X	136112390	136112390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:136112390C>T	uc011mwh.1	-	1	1444	c.1444G>A	c.(1444-1446)GAT>AAT	p.D482N		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	482	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					GGGTGGCTATCTTCTTTCGGG	0.483													9	34					0	0	0.000442599	0	0
FGF13	2258	broad.mit.edu	37	X	137715087	137715087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:137715087C>T	uc004fam.2	-	5	1324	c.662G>A	c.(661-663)GGG>GAG	p.G221E	FGF13_uc004fan.2_Missense_Mutation_p.G168E|FGF13_uc011mwi.1_Missense_Mutation_p.G202E|FGF13_uc004faq.2_Missense_Mutation_p.G231E|FGF13_uc004far.2_Missense_Mutation_p.G202E|FGF13_uc011mwj.1_Missense_Mutation_p.G231E|FGF13_uc011mwk.1_Missense_Mutation_p.G175E	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	221					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GGTTGGGGTCCCGCTTCCAGA	0.522													11	22					0	0	0.00185496	0	0
FGF13	2258	broad.mit.edu	37	X	137715094	137715094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:137715094C>T	uc004fam.2	-	5	1317	c.655G>A	c.(655-657)GGA>AGA	p.G219R	FGF13_uc004fan.2_Missense_Mutation_p.G166R|FGF13_uc011mwi.1_Missense_Mutation_p.G200R|FGF13_uc004faq.2_Missense_Mutation_p.G229R|FGF13_uc004far.2_Missense_Mutation_p.G200R|FGF13_uc011mwj.1_Missense_Mutation_p.G229R|FGF13_uc011mwk.1_Missense_Mutation_p.G173R	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	219					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTCCCGCTTCCAGATCGGGAG	0.517													11	21					0	0	0.000978159	0	0
CXorf66	347487	broad.mit.edu	37	X	139038647	139038647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:139038647G>A	uc004fbb.2	-	3	516	c.494C>T	c.(493-495)TCC>TTC	p.S165F		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	165	Ser-rich.|Cytoplasmic (Potential).					integral to membrane					0						TGATGACTTGGATGACCTTTT	0.393													61	177					0	0	0.00361006	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995171	140995171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:140995171C>T	uc004fbt.2	+	4	2267	c.1981C>T	c.(1981-1983)CAT>TAT	p.H661Y	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	661							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GTCTCCTCTCCATAGTCCTCA	0.582										HNSCC(15;0.026)			13	40					0	0	0.00244969	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995249	140995249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:140995249G>A	uc004fbt.2	+	4	2345	c.2059G>A	c.(2059-2061)GAT>AAT	p.D687N	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	687							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGGGGGAGGATTCCCTGTC	0.577										HNSCC(15;0.026)			9	28					0	0	0.000442599	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995273	140995273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:140995273C>T	uc004fbt.2	+	4	2369	c.2083C>T	c.(2083-2085)CCT>TCT	p.P695S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	695							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTCCAAATTCCTCAGAGTCC	0.562										HNSCC(15;0.026)			9	25					0	0	0.000442599	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995398	140995398	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:140995398C>T	uc004fbt.2	+	4	2494	c.2208C>T	c.(2206-2208)TTC>TTT	p.F736F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	736							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGAGGACTTCCAGTCTTCTC	0.552										HNSCC(15;0.026)			18	60					0	0	0.00074312	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995987	140995987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:140995987G>A	uc004fbt.2	+	4	3083	c.2797G>A	c.(2797-2799)GAG>AAG	p.E933K	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	933	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CACAAAGGCAGAGATGCTGAC	0.478										HNSCC(15;0.026)			36	76					0	0	0.000814825	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996618	140996618	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:140996618G>A	uc004fbt.2	+	4	3714	c.3428G>A	c.(3427-3429)TGA>TAA	p.*1143*	MAGEC1_uc010nsl.1_Silent_p.*210*	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1143							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTTCTGAGTGAAGTCTAGGG	0.527										HNSCC(15;0.026)			5	23					0	0	0.000602214	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291335	141291335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:141291335C>T	uc004fbu.1	-	3	787	c.439G>A	c.(439-441)GAG>AAG	p.E147K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	147	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCCACTAACTCGGCCACCTTT	0.493										HNSCC(46;0.14)			32	68					0	0	0.00327116	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795215	142795215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:142795215C>T	uc004fbz.2	-	2	1217	c.463G>A	c.(463-465)GAC>AAC	p.D155N		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	155										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGGTGGGTCCAGGTCTTCG	0.512													46	147					0	0	0.00361006	0	0
CNGA2	1260	broad.mit.edu	37	X	150906984	150906984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:150906984G>A	uc004fey.1	+	2	253	c.29G>A	c.(28-30)AGC>AAC	p.S10N		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	10	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGTGAAGAGCTCCCCAGCC	0.512													21	49					0	0	0.000720815	0	0
GABRE	2564	broad.mit.edu	37	X	151130984	151130984	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:151130984C>T	uc004ffi.2	-	4	528	c.474G>A	c.(472-474)AGG>AGA	p.R158R	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA|MIR452_hsa-mir-452|MI0001733_5'Flank	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	158	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCTTAGAATTCCTAAAAAAGG	0.493													6	28					0	0	0.00116845	0	0
GABRE	2564	broad.mit.edu	37	X	151131032	151131032	+	Silent	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:151131032C>T	uc004ffi.2	-	4	480	c.426G>A	c.(424-426)CTG>CTA	p.L142L	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA|MIR452_hsa-mir-452|MI0001733_5'Flank	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	142	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CATTGCCATTCAGAACAAGAG	0.502													14	45					0	0	0.000422831	0	0
L1CAM	3897	broad.mit.edu	37	X	153128946	153128946	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:153128946G>A	uc004fjb.2	-	26	3624	c.3516C>T	c.(3514-3516)ACC>ACT	p.T1172T	L1CAM_uc004fjc.2_Silent_p.T1172T|L1CAM_uc010nuo.2_Silent_p.T1167T	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	1172	Cytoplasmic (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ACTCGCCGAAGGTCTCATCTT	0.617													12	10					0	0	0.00244969	0	0
L1CAM	3897	broad.mit.edu	37	X	153135267	153135267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:153135267G>A	uc004fjb.2	-	9	1222	c.1114C>T	c.(1114-1116)CCT>TCT	p.P372S	L1CAM_uc004fjc.2_Missense_Mutation_p.P372S|L1CAM_uc010nuo.2_Missense_Mutation_p.P367S|L1CAM_uc004fjd.1_Missense_Mutation_p.P186S|L1CAM_uc004fje.1_Missense_Mutation_p.P367S	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	372	Extracellular (Potential).|Ig-like C2-type 4.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCCTCCACAGGGATCCCGTTG	0.662													4	10					0	0	0.000602214	0	0
EMD	2010	broad.mit.edu	37	X	153609346	153609346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:153609346C>T	uc004fkl.2	+	6	802	c.554C>T	c.(553-555)TCC>TTC	p.S185F		NM_000117	NP_000108	P50402	EMD_HUMAN	emerin	185	Interaction with F-actin (Probable).|Interaction with CTNNB1.				cellular response to growth factor stimulus|muscle contraction|muscle organ development|negative regulation of catenin import into nucleus|negative regulation of fibroblast proliferation|positive regulation of protein export from nucleus|regulation of canonical Wnt receptor signaling pathway	endoplasmic reticulum|integral to membrane|microtubule|nuclear inner membrane|nuclear outer membrane	actin binding|beta-tubulin binding				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TATCCTACTTCCTCCTCCACC	0.607													12	22					0	0	0.00244969	0	0
F8	2157	broad.mit.edu	37	X	154157568	154157568	+	Silent	SNP	G	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chrX:154157568G>A	uc004fmt.2	-	14	4668	c.4497C>T	c.(4495-4497)CTC>CTT	p.L1499L		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1499	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	CTGGTTTCGGGAGAACAGTGT	0.443													26	20					0	0	0.000878237	0	0
BRDT	676	broad.mit.edu	37	1	92428378	92428378	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr1:92428378delA	uc001dok.3	+	2	416	c.67delA	c.(67-69)AAGfs	p.K23fs	BRDT_uc001dol.3_Frame_Shift_Del_p.K23fs|BRDT_uc010osz.1_Frame_Shift_Del_p.K23fs|BRDT_uc009wdf.2_Intron|BRDT_uc010ota.1_Frame_Shift_Del_p.K23fs|BRDT_uc010otb.1_Frame_Shift_Del_p.K23fs|BRDT_uc001dom.3_Frame_Shift_Del_p.K23fs	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	23					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TATAAATACTAAGAAAAATGG	0.368													23	95	---	---	---	---					
SLC29A2	3177	broad.mit.edu	37	11	66131787	66131788	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr11:66131787_66131788delAG	uc001oht.2	-	11	1396_1397	c.1167_1168delCT	c.(1165-1170)CTCTTCfs	p.L389fs	SLC29A2_uc001ohs.2_Frame_Shift_Del_p.L269fs|SLC29A2_uc010rpb.1_RNA|SLC29A2_uc009yrf.2_Frame_Shift_Del_p.L269fs|SLC29A2_uc001ohu.2_Frame_Shift_Del_p.L389fs|SLC29A2_uc001ohv.2_Frame_Shift_Del_p.L345fs	NM_001532	NP_001523	Q14542	S29A2_HUMAN	solute carrier family 29 (nucleoside	389_390	Helical; (Potential).				cell proliferation|nucleobase, nucleoside and nucleotide metabolic process	basolateral plasma membrane|integral to plasma membrane|nuclear membrane|nucleolus	nucleoside transmembrane transporter activity			ovary(1)	1						TCCTGTGGGAAGAGGATGGGCA	0.634											OREG0021103	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	24	---	---	---	---					
B4GALT6	9331	broad.mit.edu	37	18	29225354	29225355	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr18:29225354_29225355insC	uc002kwz.3	-	4	731_732	c.434_435insG	c.(433-435)GGTfs	p.G145fs	B4GALT6_uc010dma.2_Frame_Shift_Ins_p.G106fs|B4GALT6_uc010dmb.2_Frame_Shift_Ins_p.G145fs	NM_004775	NP_004766	Q9UBX8	B4GT6_HUMAN	beta-1,4-galactosyltransferase 6	145	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding				0			OV - Ovarian serous cystadenocarcinoma(10;0.00791)			GCCTCCAATGACCCCCTGGCTC	0.376													11	98	---	---	---	---					
UBR3	130507	broad.mit.edu	37	2	170929938	170929940	+	In_Frame_Del	DEL	GAA	-	-			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr2:170929938_170929940delGAA	uc010zdi.1	+	36	5020_5022	c.5020_5022delGAA	c.(5020-5022)GAAdel	p.E1677del	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_In_Frame_Del_p.E498del|UBR3_uc002uft.3_In_Frame_Del_p.E534del|UBR3_uc010zdj.1_In_Frame_Del_p.E368del|UBR3_uc002ufu.3_In_Frame_Del_p.E183del	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1677					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						TGTCTAAAAGGAAGAAGAAGAAT	0.379													42	91	---	---	---	---					
ADAM33	80332	broad.mit.edu	37	20	3662605	3662605	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:3662605delA	uc002wit.2	-	1	134	c.47delT	c.(46-48)CTGfs	p.L16fs	ADAM33_uc002wir.1_Frame_Shift_Del_p.L16fs|ADAM33_uc002wiu.2_Frame_Shift_Del_p.L16fs|ADAM33_uc002wiw.1_RNA|ADAM33_uc010gba.1_Frame_Shift_Del_p.L16fs|ADAM33_uc010gbb.1_Frame_Shift_Del_p.L16fs|ADAM33_uc002wix.1_Frame_Shift_Del_p.L16fs|ADAM33_uc010zqg.1_Frame_Shift_Del_p.L16fs|ADAM33_uc010zqh.1_Frame_Shift_Del_p.L16fs|ADAM33_uc002wiy.2_Frame_Shift_Del_p.L16fs	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	16					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						cagtagtagcagcagcagcaA	0.637													2	4	---	---	---	---					
OTOR	56914	broad.mit.edu	37	20	16730592	16730593	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:16730592_16730593insA	uc002wpj.2	+	3	344_345	c.300_301insA	c.(298-303)TTCCCCfs	p.F100fs	OTOR_uc002wpk.2_RNA	NM_020157	NP_064542	Q9NRC9	OTOR_HUMAN	otoraplin precursor	100_101	SH3.				sensory perception of sound	extracellular region				ovary(1)|central_nervous_system(1)	2						TGGGTTATTTCCCCAGGAACTT	0.416													6	10	---	---	---	---					
ARFGAP1	55738	broad.mit.edu	37	20	61912694	61912695	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr20:61912694_61912695insA	uc002yem.2	+	8	791_792	c.679_680insA	c.(679-681)GAGfs	p.E227fs	ARFGAP1_uc011aas.1_Frame_Shift_Ins_p.E174fs|ARFGAP1_uc011aat.1_Frame_Shift_Ins_p.E114fs|ARFGAP1_uc002yel.2_Frame_Shift_Ins_p.E227fs|ARFGAP1_uc002yen.2_Frame_Shift_Ins_p.E227fs	NM_018209	NP_060679	Q8N6T3	ARFG1_HUMAN	ADP-ribosylation factor GTPase activating	227					COPI coating of Golgi vesicle|protein transport|regulation of ARF GTPase activity|retrograde vesicle-mediated transport, Golgi to ER	cytosol|Golgi-associated vesicle membrane	ARF GTPase activator activity|zinc ion binding			pancreas(1)	1	all_cancers(38;1.59e-09)					GGCAGCCAAGGAGGGCGTAAGT	0.658													4	7	---	---	---	---					
MTMR14	64419	broad.mit.edu	37	3	9695378	9695383	+	In_Frame_Del	DEL	ATGGGG	-	-			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr3:9695378_9695383delATGGGG	uc003brz.2	+	2	357_362	c.233_238delATGGGG	c.(232-240)AATGGGGAT>AAT	p.GD79del	MTMR14_uc003bsa.2_In_Frame_Del_p.GD79del|MTMR14_uc003bsb.2_In_Frame_Del_p.GD79del|MTMR14_uc011ath.1_RNA|MTMR14_uc010hcl.2_Intron	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	79_80						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					CCAAACACGAATGGGGATATCTGTGG	0.500													18	89	---	---	---	---					
ANKRD32	84250	broad.mit.edu	37	5	94030940	94030941	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:94030940_94030941delGT	uc003kkr.3	+	21	3180_3181	c.3100_3101delGT	c.(3100-3102)GTGfs	p.V1034fs	ANKRD32_uc003kks.2_Frame_Shift_Del_p.V398fs	NM_032290	NP_115666	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	1034										ovary(2)	2		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		GAATTTGAAAGTGTGTCCTGGG	0.411													13	51	---	---	---	---					
RAB9BP1	9366	broad.mit.edu	37	5	104435260	104435260	+	RNA	DEL	T	-	-			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr5:104435260delT	uc003kok.2	+	1		c.86delT				NR_000039				Homo sapiens RAB9, member RAS oncogene family, pseudogene 1 (RAB9P1), non-coding RNA.												0						AGATATGTAATTAATAAGTTT	0.353													8	15	---	---	---	---					
GPR37	2861	broad.mit.edu	37	7	124404490	124404490	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr7:124404490delA	uc003vli.2	-	1	1192	c.541delT	c.(541-543)TACfs	p.Y181fs		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	181	Extracellular (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						CTTGGCCAGTAAAAAAGATCG	0.602													14	104	---	---	---	---					
SLC34A3	142680	broad.mit.edu	37	9	140130595	140130596	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A181-06A-11D-A196-08	TCGA-EE-A181-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	61e724b8-b8ad-47f6-88e8-ae5ef88e224e	e19f500b-da40-4273-997a-36fc00028417	g.chr9:140130595_140130596insG	uc004cmf.1	+	13	1713_1714	c.1527_1528insG	c.(1525-1530)GCAGGGfs	p.A509fs	SLC34A3_uc011met.1_Frame_Shift_Ins_p.A509fs	NM_080877	NP_543153	Q8N130	NPT2C_HUMAN	solute carrier family 34 (sodium phosphate),	509_510	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|integral to membrane	sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		TCTCCCTGGCAGGGGGCATGGA	0.718											OREG0019630	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	3	---	---	---	---					
