Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DHRS3	9249	broad.mit.edu	37	1	12639360	12639360	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:12639360G>A	uc001auc.2	-	3	887	c.420C>T	c.(418-420)CTC>CTT	p.L140L	DHRS3_uc001aub.2_Silent_p.L55L|DHRS3_uc009vnm.2_Silent_p.L140L	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	140					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	GGGACTTGAGGAGGGCATCAT	0.622													40	4					0	0	0.002852	0	0
MST1P2	11209	broad.mit.edu	37	1	16976345	16976345	+	RNA	SNP	T	C	C	rs139809665	by1000genomes	TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:16976345T>C	uc010och.1	+	13		c.2190T>C			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTTGCTGAATGTCATCTCCA	0.582													3	5					0	0	0.000248	0	0
CROCC	9696	broad.mit.edu	37	1	17257788	17257788	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:17257788C>T	uc001azt.2	+	8	921	c.852C>T	c.(850-852)TCC>TCT	p.S284S	CROCC_uc009voy.1_Intron|CROCC_uc009voz.1_Silent_p.S47S	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	284					cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		CCCTCCAGTCCTTCAACGCCT	0.617													49	50					0	0	0.003610	0	0
TMEM50A	23585	broad.mit.edu	37	1	25679448	25679448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:25679448G>A	uc001bke.2	+	5	500	c.350G>A	c.(349-351)GGA>GAA	p.G117E	TMEM50A_uc010oeq.1_Intron|TMEM50A_uc009vrr.2_RNA|TMEM50A_uc009vrs.2_Intron	NM_014313	NP_055128	O95807	TM50A_HUMAN	small membrane protein 1	117						endoplasmic reticulum|integral to membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;3.47e-27)|Colorectal(126;1.1e-08)|COAD - Colon adenocarcinoma(152;7.48e-07)|STAD - Stomach adenocarcinoma(196;0.00035)|BRCA - Breast invasive adenocarcinoma(304;0.00047)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|GBM - Glioblastoma multiforme(114;0.00106)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.204)		ATTCTTTTTGGAGGTTATGTT	0.328													47	2					0	0	0.003610	0	0
C1orf177	163747	broad.mit.edu	37	1	55277557	55277557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:55277557G>A	uc001cyb.3	+	5	625	c.571G>A	c.(571-573)GGC>AGC	p.G191S	C1orf177_uc001cya.3_Missense_Mutation_p.G191S	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	191											0						TCATTCCGAGGGCCTCATGTG	0.607													19	4					0	0	0.008871	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			88	10					3.11363e-52	4.48729e-52	0.003610	1	0
HSD3B2	3284	broad.mit.edu	37	1	119964637	119964637	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:119964637G>A	uc001ehs.2	+	3	1286	c.513G>A	c.(511-513)TGG>TGA	p.W171*	HSD3B2_uc001eht.2_Nonsense_Mutation_p.W171*|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	171					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	CTAATGGGTGGAATCTAAAAA	0.493													24	74					0	0	0.002299	0	0
HSD3B2	3284	broad.mit.edu	37	1	119965004	119965004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:119965004G>A	uc001ehs.2	+	3	1653	c.880G>A	c.(880-882)GGC>AGC	p.G294S	HSD3B2_uc001eht.2_Missense_Mutation_p.G294S|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	294	Helical; (Potential).		G -> V (in AH2; nonsalt-wasting form; activity abolished).		androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	GTACTGGATTGGCTTCCTGCT	0.463													86	31					0	0	0.003610	0	0
LCE1B	353132	broad.mit.edu	37	1	152785266	152785266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:152785266G>A	uc001faq.2	+	1	820	c.344G>A	c.(343-345)GGA>GAA	p.G115E		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	115	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CAGCACTCTGGAGGCTGCTGC	0.602													85	8					0	0	0.003610	0	0
FLAD1	80308	broad.mit.edu	37	1	154962054	154962054	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:154962054A>G	uc001fgf.1	+	3	1490	c.1136A>G	c.(1135-1137)AAG>AGG	p.K379R	FLAD1_uc001fgd.1_Missense_Mutation_p.K379R|FLAD1_uc001fge.1_Missense_Mutation_p.K282R|FLAD1_uc001fgg.1_Missense_Mutation_p.K282R|FLAD1_uc001fgh.1_Intron	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	379					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TTGGGGAAAAAGGTGGCAGGT	0.502													3	132					0	0	0.004672	0	0
RIT1	6016	broad.mit.edu	37	1	155870322	155870322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:155870322C>T	uc001fmh.1	-	6	704	c.517G>A	c.(517-519)GAT>AAT	p.D173N	RIT1_uc010pgr.1_Missense_Mutation_p.D137N	NM_006912	NP_008843	Q92963	RIT1_HUMAN	Ras-like without CAAX 1	173					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			breast(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;1.79e-05)			TGGAAAACATCATCAATATAG	0.453													59	156					0	0	0.003610	0	0
RIT1	6016	broad.mit.edu	37	1	155874290	155874290	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:155874290C>G	uc001fmh.1	-	5	428	c.241G>C	c.(241-243)GAG>CAG	p.E81Q	RIT1_uc010pgr.1_Missense_Mutation_p.E45Q	NM_006912	NP_008843	Q92963	RIT1_HUMAN	Ras-like without CAAX 1	81					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			breast(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;1.79e-05)			GCTGTAAACTCTGCCTAGAGG	0.428													14	29					0	0	0.002450	0	0
DUSP27	92235	broad.mit.edu	37	1	167095469	167095469	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:167095469G>A	uc001geb.1	+	5	1101	c.1101G>A	c.(1099-1101)CAG>CAA	p.Q367Q		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	367					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AGGTCCCCCAGGATGGAGGTG	0.637													18	0					0	0	0.008871	0	0
MIR557	693142	broad.mit.edu	37	1	168344763	168344763	+	RNA	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:168344763G>A	hsa-mir-557|MI0003563	+			c.2G>A																				0						TGTGCAGACAGAATGGGCAAA	0.547													240	8					0	0	0.003610	0	0
RFWD2	64326	broad.mit.edu	37	1	175957522	175957522	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:175957522C>G	uc001gku.1	-	17	2130	c.1874G>C	c.(1873-1875)TGG>TCG	p.W625S	RFWD2_uc001gkv.1_Missense_Mutation_p.W601S|RFWD2_uc001gkw.1_Missense_Mutation_p.W385S|RFWD2_uc009wwv.2_Missense_Mutation_p.W424S|RFWD2_uc001gkt.1_Missense_Mutation_p.W464S	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	625	WD 5.				DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						CCCTACATTCCACAGTTTTAG	0.388													11	32					0	0	0.008291	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525945	176525945	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:176525945C>T	uc001gkz.2	+	2	1651	c.487C>T	c.(487-489)CAG>TAG	p.Q163*	PAPPA2_uc001gky.1_Nonsense_Mutation_p.Q163*|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	163					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGCCGGGATTCAGAAAGGCTC	0.547													67	8					0	0	0.003610	0	0
CEP350	9857	broad.mit.edu	37	1	180006154	180006154	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:180006154C>G	uc001gnt.2	+	17	4423	c.4040C>G	c.(4039-4041)TCA>TGA	p.S1347*	CEP350_uc009wxl.2_Nonsense_Mutation_p.S1346*|CEP350_uc001gnu.2_Nonsense_Mutation_p.S1180*	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1347						centrosome|nucleus|spindle				ovary(4)	4						CGCCAACTGTCAGATGTAGAA	0.463													4	19					0	0	0.001168	0	0
IVNS1ABP	10625	broad.mit.edu	37	1	185269600	185269600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:185269600G>A	uc001grl.2	-	11	1834	c.1211C>T	c.(1210-1212)CCA>CTA	p.P404L	IVNS1ABP_uc001gri.2_Missense_Mutation_p.P64L|IVNS1ABP_uc001grj.2_Missense_Mutation_p.P64L|IVNS1ABP_uc009wyj.2_Missense_Mutation_p.P186L|IVNS1ABP_uc009wyk.2_RNA|IVNS1ABP_uc001grm.2_Missense_Mutation_p.P64L	NM_006469	NP_006460	Q9Y6Y0	NS1BP_HUMAN	influenza virus NS1A binding protein	404	Kelch 1.				interspecies interaction between organisms|response to virus|RNA splicing|transcription from RNA polymerase III promoter	cytoplasm|cytoskeleton|spliceosomal complex|transcription factor complex				ovary(4)|central_nervous_system(1)	5						TCGGGCTCTTGGTGTTCTCAT	0.428													92	10					0	0	0.003610	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200826532	200826532	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:200826532C>T	uc001gvl.2	+	17	4414	c.4144C>T	c.(4144-4146)CAG>TAG	p.Q1382*	CAMSAP1L1_uc001gvk.2_Nonsense_Mutation_p.Q1371*|CAMSAP1L1_uc001gvm.2_Nonsense_Mutation_p.Q1355*	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1382	CKK.					cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AAATGAAGGTCAGAAGAAAAA	0.363													13	25					0	0	0.001368	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200826983	200826983	+	Silent	SNP	C	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:200826983C>A	uc001gvl.2	+	18	4536	c.4266C>A	c.(4264-4266)ATC>ATA	p.I1422I	CAMSAP1L1_uc001gvk.2_Silent_p.I1411I|CAMSAP1L1_uc001gvm.2_Silent_p.I1395I	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1422	CKK.					cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTGAAGAAATCAATAAACTGA	0.368													32	62					1.13719e-10	1.61514e-10	0.008361	1	0
Unknown	0	broad.mit.edu	37	1	211380598	211380598	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:211380598G>A	uc001hid.2	+	1	210	c.18G>A	c.(16-18)CTG>CTA	p.L6L						SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;																		AGTATTTCCTGGGCCAGAGCG	0.672													5	3					0	0	0.000602	0	0
TMEM206	55248	broad.mit.edu	37	1	212560296	212560296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:212560296C>T	uc001hjc.3	-	3	448	c.280G>A	c.(280-282)GAG>AAG	p.E94K	TMEM206_uc010pte.1_Missense_Mutation_p.E155K	NM_018252	NP_060722	Q9H813	TM206_HUMAN	transmembrane protein 206	94	Extracellular (Potential).					integral to membrane				breast(1)	1				all cancers(67;0.012)|OV - Ovarian serous cystadenocarcinoma(81;0.0121)|GBM - Glioblastoma multiforme(131;0.0377)|Epithelial(68;0.148)		TTGAGTTTCTCACGAAAGTCT	0.557													54	148					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	216348806	216348806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:216348806G>A	uc001hku.1	-	21	4802	c.4415C>T	c.(4414-4416)CCA>CTA	p.P1472L	USH2A_uc001hkv.2_Missense_Mutation_p.P1472L	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1472	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AACCAGAGGTGGCCTCAGTTG	0.393										HNSCC(13;0.011)			34	5					0	0	0.003755	0	0
C1orf57	84284	broad.mit.edu	37	1	233091435	233091435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:233091435C>T	uc001hvj.1	+	2	254	c.167C>T	c.(166-168)TCC>TTC	p.S56F	C1orf57_uc001hvi.2_Missense_Mutation_p.S56F|C1orf57_uc009xft.1_Intron	NM_032324	NP_115700	Q9BSD7	NTPCR_HUMAN	nucleoside-triphosphatase C1orf57	56							ATP binding|nucleoside-triphosphatase activity|nucleotide phosphatase activity|transferase activity				0		all_cancers(173;0.0818)|Prostate(94;0.137)				GTCACGTTGTCCGGCACCCGG	0.463													44	2					0	0	0.003610	0	0
OR11L1	391189	broad.mit.edu	37	1	248004239	248004239	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:248004239G>A	uc001idn.1	-	1	960	c.960C>T	c.(958-960)TTC>TTT	p.F320F		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	320	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCTAATAAAGGAACTTCCTTT	0.363													42	2					0	0	0.003610	0	0
OR2G6	391211	broad.mit.edu	37	1	248685544	248685544	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:248685544C>T	uc001ien.1	+	1	597	c.597C>T	c.(595-597)CTC>CTT	p.L199L		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGGCAGAACTCTTTGTGGCCA	0.473													52	8					0	0	0.003610	0	0
KIAA1217	56243	broad.mit.edu	37	10	24833125	24833125	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr10:24833125G>A	uc001iru.3	+	19	5329	c.4926G>A	c.(4924-4926)GAG>GAA	p.E1642E	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Silent_p.E1325E|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Silent_p.E478E	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1642					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GGAGGCAAGAGCAGCCCAGCA	0.473													23	3					0	0	0.001882	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317935	30317935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr10:30317935C>T	uc001iux.2	-	2	1201	c.1142G>A	c.(1141-1143)GGG>GAG	p.G381E	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.G243E|KIAA1462_uc009xle.1_Missense_Mutation_p.G381E	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	381	Pro-rich.									ovary(4)	4						ACCGCTGGCCCCAGCCTTCTC	0.632													45	6					0	0	0.003610	0	0
PCDH15	65217	broad.mit.edu	37	10	55721526	55721526	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr10:55721526T>A	uc001jju.1	-	22	3390	c.2995A>T	c.(2995-2997)ACA>TCA	p.T999S	PCDH15_uc010qhq.1_Missense_Mutation_p.T1004S|PCDH15_uc010qhr.1_Missense_Mutation_p.T999S|PCDH15_uc010qhs.1_Missense_Mutation_p.T1011S|PCDH15_uc010qht.1_Missense_Mutation_p.T1006S|PCDH15_uc010qhu.1_Missense_Mutation_p.T999S|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.T999S|PCDH15_uc010qhw.1_Missense_Mutation_p.T962S|PCDH15_uc010qhx.1_Missense_Mutation_p.T928S|PCDH15_uc010qhy.1_Missense_Mutation_p.T1004S|PCDH15_uc010qhz.1_Missense_Mutation_p.T999S|PCDH15_uc010qia.1_Missense_Mutation_p.T977S|PCDH15_uc010qib.1_Missense_Mutation_p.T977S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	999	Extracellular (Potential).|Cadherin 9.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AAAATTGTTGTAGGTTCTTCA	0.328										HNSCC(58;0.16)			23	3					0	0	0.002780	0	0
AIFM2	84883	broad.mit.edu	37	10	71883676	71883676	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr10:71883676G>A	uc010qjg.1	-	1	178	c.165C>T	c.(163-165)GCC>GCT	p.A55A	AIFM2_uc001jqp.1_Silent_p.A55A	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	55					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						TCTCCACGGAGGCTCGGAGAG	0.607													12	3					0	0	0.002450	0	0
TTC18	118491	broad.mit.edu	37	10	75082751	75082751	+	Silent	SNP	G	A	A	rs149669117		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr10:75082751G>A	uc009xrc.2	-	10	1213	c.1092C>T	c.(1090-1092)TAC>TAT	p.Y364Y	TTC18_uc001jty.2_Silent_p.Y364Y|TTC18_uc009xrd.1_Silent_p.Y172Y	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	364							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CTAGGTAAGGGTAAACATGAA	0.353													17	6					0	0	0.008871	0	0
LRIT2	340745	broad.mit.edu	37	10	85982013	85982013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr10:85982013G>A	uc001kcy.2	-	3	1324	c.1316C>T	c.(1315-1317)CCT>CTT	p.P439L	LRIT2_uc010qmc.1_Missense_Mutation_p.P449L	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	439	Fibronectin type-III.					integral to membrane				ovary(2)	2						CTGGTGTGGAGGCTGGCCCTC	0.557													36	9					0	0	0.003610	0	0
PLCE1	51196	broad.mit.edu	37	10	96084290	96084290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr10:96084290G>A	uc001kjk.2	+	31	7320	c.6686G>A	c.(6685-6687)GGA>GAA	p.G2229E	PLCE1_uc010qnx.1_Missense_Mutation_p.G2213E|PLCE1_uc001kjm.2_Missense_Mutation_p.G1921E|PLCE1_uc001kjp.2_Missense_Mutation_p.G587E	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	2229	Ras-associating 2.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AAAGGTGCAGGAAAATTCATC	0.433													46	12					0	0	0.003610	0	0
SCD	6319	broad.mit.edu	37	10	102116451	102116451	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr10:102116451C>T	uc001kqy.2	+	5	1300	c.810C>T	c.(808-810)CTC>CTT	p.L270L		NM_005063	NP_005054	O00767	ACOD_HUMAN	stearoyl-CoA desaturase 1	270	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity				0		Colorectal(252;0.0323)		Epithelial(162;1.97e-10)|all cancers(201;1.73e-08)		CTGCCCACCTCTTCGGATATC	0.488													19	1					0	0	0.001523	0	0
CHRNA10	57053	broad.mit.edu	37	11	3690440	3690440	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:3690440G>A	uc001lyf.2	-	3	420	c.348C>T	c.(346-348)ATC>ATT	p.I116I	CHRNA10_uc010qxt.1_5'UTR|CHRNA10_uc010qxu.1_5'UTR	NM_020402	NP_065135	Q9GZZ6	ACH10_HUMAN	cholinergic receptor, nicotinic, alpha 10	116	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|regulation of cell proliferation|synaptic transmission, cholinergic	cell junction|postsynaptic membrane	calcium channel activity|receptor activity|receptor binding			ovary(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0164)|all_neural(188;0.0577)		BRCA - Breast invasive adenocarcinoma(625;0.0344)|LUSC - Lung squamous cell carcinoma(625;0.192)	Chloroprocaine(DB01161)|Methadone(DB00333)|Nicotine(DB00184)|Pentolinium(DB01090)|Procaine(DB00721)|Trimethaphan(DB01116)	TATAGAGTACGATGTCTGGCC	0.577													15	24					0	0	0.004007	0	0
HBD	3045	broad.mit.edu	37	11	5255394	5255394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:5255394C>T	uc001maf.1	-	2	337	c.142G>A	c.(142-144)GAT>AAT	p.D48N		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	48					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGGACAGATCCCCAAAGGAC	0.522													26	34					0	0	0.007291	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806693	6806693	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:6806693G>A	uc001mer.1	+	1	425	c.425G>A	c.(424-426)TGG>TAG	p.W142*		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AGAGCCTGCTGGCTCATGGTG	0.542													28	27					0	0	0.008361	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17139151	17139151	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:17139151G>A	uc001mmq.3	-	18	3169	c.3103C>T	c.(3103-3105)CTG>TTG	p.L1035L	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Silent_p.L655L|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	1035					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	CCTACTGACAGGAGAGCACCC	0.418													22	31					0	0	0.001882	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137769	40137769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:40137769G>A	uc001mxa.1	-	2	2038	c.74C>T	c.(73-75)CCC>CTC	p.P25L	LRRC4C_uc001mxc.1_Missense_Mutation_p.P21L|LRRC4C_uc001mxd.1_Missense_Mutation_p.P21L|LRRC4C_uc001mxb.1_Missense_Mutation_p.P21L	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	25					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CACAAGCAGGGGGTCAAATAG	0.507													10	12					0	0	0.008291	0	0
OR4X1	390113	broad.mit.edu	37	11	48285553	48285553	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:48285553C>T	uc010rht.1	+	1	141	c.141C>T	c.(139-141)ATC>ATT	p.I47I		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						TGGTGACCATCCTGGCCAGCA	0.488													20	17					0	0	0.001882	0	0
OR4A16	81327	broad.mit.edu	37	11	55110709	55110709	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:55110709C>T	uc010rie.1	+	1	33	c.33C>T	c.(31-33)GTC>GTT	p.V11V		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						CAGAATTTGTCCTCCTGGGCC	0.388													8	11					0	0	0.003080	0	0
OR4A16	81327	broad.mit.edu	37	11	55110928	55110928	+	Silent	SNP	C	T	T	rs150328499		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:55110928C>T	uc010rie.1	+	1	252	c.252C>T	c.(250-252)CTC>CTT	p.L84L		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						TAGACTTACTCTGTGATAAAA	0.453													59	69					0	0	0.003610	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756518	56756518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:56756518G>A	uc010rjp.1	+	1	130	c.130G>A	c.(130-132)GGA>AGA	p.G44R		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GGGTAATAGTGGAATAATCTT	0.368													21	47					0	0	0.008871	0	0
MS4A1	931	broad.mit.edu	37	11	60230528	60230528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:60230528G>A	uc001npp.2	+	4	629	c.213G>A	c.(211-213)ATG>ATA	p.M71I	MS4A1_uc009ymy.1_Missense_Mutation_p.M71I|MS4A1_uc001npq.2_Missense_Mutation_p.M71I|MS4A1_uc009yna.2_Missense_Mutation_p.M71I|MS4A1_uc009ymz.2_Missense_Mutation_p.M71I|MS4A1_uc010rlc.1_Intron	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member	71	Helical; (Potential).			M -> I (in Ref. 4; AAA88911).	B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	GTCTTCTGATGATCCCAGCAG	0.517													47	47					0	0	0.003610	0	0
MTA2	9219	broad.mit.edu	37	11	62368097	62368097	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:62368097G>A	uc001ntq.1	-	2	474	c.93C>T	c.(91-93)AAC>AAT	p.N31N	MTA2_uc010rlx.1_5'UTR	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	31	BAH.				chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CACTCACCTTGTTGAGCTCCT	0.498													13	13					0	0	0.001855	0	0
SLC22A11	55867	broad.mit.edu	37	11	64326684	64326684	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:64326684C>T	uc001oai.2	+	2	845	c.471C>T	c.(469-471)TCC>TCT	p.S157S	SLC22A11_uc001oah.1_Intron|SLC22A11_uc001oaj.2_Silent_p.S157S|SLC22A11_uc009ypq.2_Silent_p.S157S|SLC22A11_uc001oak.1_5'Flank	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	157	Helical; (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	TGGTGGGCTCCTTTATCTGGG	0.602													20	29					0	0	0.001523	0	0
CABP4	57010	broad.mit.edu	37	11	67223192	67223192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:67223192C>T	uc001olo.2	+	1	375	c.298C>T	c.(298-300)CGT>TGT	p.R100C	GPR152_uc001olm.2_5'Flank|CABP4_uc001oln.2_5'UTR	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	100					visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			CCACCGACATCGTCCTGACTC	0.677													6	9					0	0	0.001168	0	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249346	71249346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:71249346C>T	uc001oqr.1	+	1	276	c.245C>T	c.(244-246)TCT>TTT	p.S82F		NM_021046	NP_066384	O75690	KRA58_HUMAN	keratin associated protein 5-8	82	9 X 4 AA repeats of C-C-X-P.					extracellular region|keratin filament	structural constituent of epidermis				0						GGCTGTGGTTCTTGTGGCTGC	0.652													77	76					0	0	0.003610	0	0
POLD3	10714	broad.mit.edu	37	11	74340341	74340342	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:74340341_74340342CC>GT	uc001ovf.1	+	9	1054_1055	c.979_980CC>GT	c.(979-981)CCT>GTT	p.P327V	POLD3_uc009yua.1_Missense_Mutation_p.P221V	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	327					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					AATCAAACTTCCTGAATCTGAT	0.386													18	31					0	0	0.004672	0	0
ODZ4	26011	broad.mit.edu	37	11	78440596	78440596	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:78440596G>A	uc001ozl.3	-	22	3694	c.3231C>T	c.(3229-3231)ATC>ATT	p.I1077I		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1077	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGGTGAGGCTGATCCTCAGGA	0.582													9	15					0	0	0.006214	0	0
MTNR1B	4544	broad.mit.edu	37	11	92715223	92715223	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:92715223C>T	uc001pdk.1	+	2	937	c.834C>T	c.(832-834)CCC>CCT	p.P278P		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	278	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	CCATCAACCCCCAAGAAATGG	0.512													160	222					0	0	0.003610	0	0
SIDT2	51092	broad.mit.edu	37	11	117063910	117063910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:117063910C>T	uc001pqh.1	+	23	2188	c.2147C>T	c.(2146-2148)TCC>TTC	p.S716F	SIDT2_uc010rxe.1_Missense_Mutation_p.S716F|SIDT2_uc001pqg.2_Missense_Mutation_p.S737F|SIDT2_uc001pqi.1_Missense_Mutation_p.S713F|SIDT2_uc001pqj.1_Missense_Mutation_p.S28F	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	716	Helical; (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		GATTTCGCTTCCTACTTGTTG	0.557													149	215					0	0	0.003610	0	0
TRIM29	23650	broad.mit.edu	37	11	120008138	120008138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:120008138G>A	uc001pwz.2	-	1	726	c.602C>T	c.(601-603)CCC>CTC	p.P201L	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	201					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		CTCCAGGTGGGGCTTGAGATG	0.647													9	18					0	0	0.004482	0	0
UBASH3B	84959	broad.mit.edu	37	11	122669709	122669709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:122669709C>T	uc001pyi.3	+	10	1777	c.1417C>T	c.(1417-1419)CGC>TGC	p.R473C		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	473	Protein tyrosine phosphatase (By similarity).					cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		CCCGTCCCTTCGCTGCGTTCA	0.428													18	27					0	0	0.008871	0	0
OR8G2	26492	broad.mit.edu	37	11	124095983	124095983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:124095983C>T	uc010saf.1	+	1	586	c.586C>T	c.(586-588)CCT>TCT	p.P196S		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	196						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TGATCTCTTCCCTCTCTTGGG	0.433													61	95					0	0	0.003610	0	0
HYLS1	219844	broad.mit.edu	37	11	125769495	125769495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:125769495C>T	uc009zbv.2	+	4	766	c.232C>T	c.(232-234)CCT>TCT	p.P78S	HYLS1_uc001qcx.3_Missense_Mutation_p.P78S|PUS3_uc001qcy.2_Intron	NM_145014	NP_659451	Q96M11	HYLS1_HUMAN	hydrolethalus syndrome 1	78						centrosome|nucleus				upper_aerodigestive_tract(1)	1	all_hematologic(175;0.177)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.131)|all_lung(97;0.139)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		AAGTAATGTCCCTTCAGAAAC	0.478													16	22					0	0	0.004007	0	0
APLP2	334	broad.mit.edu	37	11	130013310	130013310	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr11:130013310C>T	uc010sby.1	+	18	2416	c.2259C>T	c.(2257-2259)CCC>CCT	p.P753P	APLP2_uc001qfp.2_Silent_p.P741P|APLP2_uc001qfq.2_Silent_p.P685P|APLP2_uc010sbz.1_Silent_p.P541P|APLP2_uc001qfr.2_Silent_p.P507P|APLP2_uc001qfs.2_Silent_p.P512P|APLP2_uc001qfv.2_Silent_p.P644P|APLP2_uc009zcv.2_Silent_p.P101P	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	753	Cytoplasmic (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		ATGAGAACCCCACCTACAAAT	0.557													25	42					0	0	0.003954	0	0
DYRK4	8798	broad.mit.edu	37	12	4705316	4705316	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr12:4705316T>C	uc001qmx.2	+	5	444	c.284T>C	c.(283-285)GTT>GCT	p.V95A	DYRK4_uc009zeh.1_Missense_Mutation_p.V210A|DYRK4_uc001qmy.1_Missense_Mutation_p.V95A	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	95			V -> I.			Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			CTTCCACAGGTCCTGCATGAT	0.552													40	66					0	0	0.008740	0	0
CNTN1	1272	broad.mit.edu	37	12	41421659	41421659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr12:41421659C>T	uc001rmm.1	+	22	2824	c.2711C>T	c.(2710-2712)CCT>CTT	p.P904L	CNTN1_uc001rmn.1_Missense_Mutation_p.P893L	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	904	Fibronectin type-III 4.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CTTTTCACAGCTCCTAGCCAG	0.403													12	22					0	0	0.001368	0	0
KCNH3	23416	broad.mit.edu	37	12	49938070	49938070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr12:49938070C>T	uc001ruh.1	+	7	1354	c.1094C>T	c.(1093-1095)GCC>GTC	p.A365V	KCNH3_uc010smj.1_Missense_Mutation_p.A305V	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	365	Helical; Name=Segment S5; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						CTGCTCATGGCCGTGTTCGCC	0.537													7	10					0	0	0.001984	0	0
C12orf50	160419	broad.mit.edu	37	12	88379718	88379718	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr12:88379718G>A	uc001tam.1	-	11	1203	c.1035C>T	c.(1033-1035)GTC>GTT	p.V345V	C12orf50_uc001tan.2_Silent_p.V360V	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	345										skin(2)|ovary(1)	3						CATTCAACGCGACAGTCCTGA	0.483													42	55					0	0	0.003214	0	0
APAF1	317	broad.mit.edu	37	12	99053033	99053033	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr12:99053033C>T	uc001tfz.2	+	5	1199	c.622C>T	c.(622-624)CAG>TAG	p.Q208*	APAF1_uc001tfy.2_Nonsense_Mutation_p.Q197*|APAF1_uc001tga.2_Nonsense_Mutation_p.Q197*|APAF1_uc001tgb.2_Nonsense_Mutation_p.Q208*|APAF1_uc001tgc.2_Nonsense_Mutation_p.Q208*	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	208	NB-ARC.				activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	ACGGTTGGATCAGGATGAGAG	0.478													51	48					0	0	0.003610	0	0
SRRM4	84530	broad.mit.edu	37	12	119540077	119540077	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr12:119540077G>A	uc001txa.1	+	2	460	c.168G>A	c.(166-168)CAG>CAA	p.Q56Q		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	56					cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						TCCCAGCTCAGGATGGACCCT	0.502													10	18					0	0	0.008291	0	0
ATP5EP2	432369	broad.mit.edu	37	13	28519363	28519363	+	RNA	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr13:28519363G>A	uc001uru.2	+	1		c.21G>A				NR_002162				Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 (ATP5EP2), transcript variant 6, non-coding RNA.											ovary(1)	1						GAGTCTTGGCGATTTGGCCCG	0.343													4	9					0	0	0.000248	0	0
THSD1	55901	broad.mit.edu	37	13	52972044	52972045	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr13:52972044_52972045GG>AA	uc001vgo.2	-	3	888_889	c.343_344CC>TT	c.(343-345)CCC>TTC	p.P115F	THSD1_uc001vgp.2_Missense_Mutation_p.P115F|THSD1_uc010tgz.1_Intron|THSD1_uc010aea.2_Intron	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	115	Extracellular (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		CTCCCACCAGGGGAATGGAGTG	0.505													32	67					0	0	0.004672	0	0
PCDH20	64881	broad.mit.edu	37	13	61986466	61986466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr13:61986466C>T	uc001vid.3	-	2	2130	c.1766G>A	c.(1765-1767)GGA>GAA	p.G589E	PCDH20_uc010thj.1_Missense_Mutation_p.G589E	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	562	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		TGTCAGAATTCCTGTGACACT	0.458													23	38					0	0	0.002780	0	0
SLC10A2	6555	broad.mit.edu	37	13	103703668	103703668	+	Missense_Mutation	SNP	G	A	A	rs143059000		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr13:103703668G>A	uc001vpy.3	-	4	1297	c.700C>T	c.(700-702)CCT>TCT	p.P234S		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	234	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CCCGCCACAGGAAATATTGTT	0.463													17	31					0	0	0.002780	0	0
C13orf28	122258	broad.mit.edu	37	13	113030784	113030784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr13:113030784G>A	uc001vsd.1	+	1	116	c.85G>A	c.(85-87)GTG>ATG	p.V29M		NM_145248	NP_660291	Q96KW9	SPAC7_HUMAN	hypothetical protein LOC122258 precursor	29						extracellular region					0	all_lung(23;0.000633)|Lung NSC(43;0.0161)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0997)|Medulloblastoma(90;0.163)					GCCGAGAACCGTGATTCCAGG	0.592													9	9					0	0	0.006214	0	0
SALL2	6297	broad.mit.edu	37	14	21993037	21993037	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr14:21993037G>A	uc001wbe.2	-	2	1107	c.825C>T	c.(823-825)TTC>TTT	p.F275F	SALL2_uc010tly.1_Silent_p.F273F|SALL2_uc010tlz.1_Silent_p.F138F|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Silent_p.F140F|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	275							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		GGTAAAGGTGGAAGAAGGCCT	0.522													11	16					0	0	0.001368	0	0
MYH6	4624	broad.mit.edu	37	14	23855163	23855163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr14:23855163C>T	uc001wjv.2	-	34	5204	c.5137G>A	c.(5137-5139)GAG>AAG	p.E1713K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1713	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGCACCCGCTCGCTGGTCTCA	0.612													19	22					0	0	0.001523	0	0
SFTA3	253970	broad.mit.edu	37	14	36946189	36946189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr14:36946189G>A	uc001wtr.2	-	3	880	c.248C>T	c.(247-249)TCA>TTA	p.S83L	SFTA3_uc001wtq.2_RNA|SFTA3_uc001wts.2_RNA	NM_001101341	NP_001094811	P0C7M3	SFTA3_HUMAN	surfactant associated 3	83											0						GGCCTCGGATGAACTCCTGCT	0.517													51	68					0	0	0.003610	0	0
ANKRD9	122416	broad.mit.edu	37	14	102973339	102973340	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr14:102973339_102973340GG>AA	uc001ylx.1	-	2	1283_1284	c.887_888CC>TT	c.(886-888)CCC>CTT	p.P296L	ANKRD9_uc001yly.1_Missense_Mutation_p.P296L|ANKRD9_uc001ylz.1_Missense_Mutation_p.P296L|ANKRD9_uc001yma.1_Missense_Mutation_p.P296L|ANKRD9_uc010awm.1_Missense_Mutation_p.P296L	NM_152326	NP_689539	Q96BM1	ANKR9_HUMAN	ankyrin repeat domain 9	296										pancreas(1)	1						CCAGGGCCTCGGGGAAGCGGCC	0.688													4	13					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106320645	106320645	+	RNA	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr14:106320645G>A	uc010tyt.1	-	3601		c.56329C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						TACCGGCCTGGGGCCTGGGGC	0.652													9	11					0	0	0.004482	0	0
AQR	9716	broad.mit.edu	37	15	35192830	35192830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr15:35192830G>A	uc001ziv.2	-	20	2417	c.2236C>T	c.(2236-2238)CCT>TCT	p.P746S		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	746						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		TACCTGAAAGGGGGTATTTGT	0.408													19	29					0	0	0.002299	0	0
FGF7	2252	broad.mit.edu	37	15	49776684	49776684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr15:49776684C>T	uc001zxn.2	+	4	1097	c.568C>T	c.(568-570)CCT>TCT	p.P190S	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	190					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	CCACTTTCTTCCTATGGCAAT	0.363													6	5					0	0	0.001168	0	0
MYO1E	4643	broad.mit.edu	37	15	59466433	59466433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr15:59466433G>A	uc002aga.2	-	20	2428	c.2056C>T	c.(2056-2058)CTT>TTT	p.L686F	MIR2116_hsa-mir-2116|MI0010635_5'Flank	NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	686					actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TCTTCTAAAAGAAATAGCTGT	0.438													37	45					0	0	0.006230	0	0
PPIB	5479	broad.mit.edu	37	15	64449083	64449083	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr15:64449083G>T	uc002and.2	-	4	538	c.369C>A	c.(367-369)TTC>TTA	p.F123L	SNX22_uc002anc.1_3'UTR	NM_000942	NP_000933	P23284	PPIB_HUMAN	peptidylprolyl isomerase B precursor	123	PPIase cyclophilin-type.				protein folding	endoplasmic reticulum lumen|melanosome	peptide binding|peptidyl-prolyl cis-trans isomerase activity|unfolded protein binding				0					L-Proline(DB00172)	TCTCATCGGGGAAGCGCTCAC	0.572													14	25					1.3612e-06	1.92632e-06	0.003163	1	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635194	82635194	+	RNA	SNP	T	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr15:82635194T>C	uc002bgx.2	-	5		c.386A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TGCAGCCTCTTCTGCTCCTCC	0.507													2	3					0	0	0.004672	0	0
RHBDF1	64285	broad.mit.edu	37	16	111688	111688	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:111688G>A	uc002cfl.3	-	12	1363	c.1215C>T	c.(1213-1215)TTC>TTT	p.F405F	RHBDF1_uc010uty.1_Silent_p.F428F|RHBDF1_uc010utz.1_Silent_p.F405F|RHBDF1_uc010bqo.1_RNA	NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	405	Cytoplasmic (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				AGTAGGTGAAGAAGGGCCTGC	0.677													11	15					0	0	0.000978	0	0
ABAT	18	broad.mit.edu	37	16	8862775	8862775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:8862775C>T	uc002czc.3	+	11	927	c.761C>T	c.(760-762)CCT>CTT	p.P254L	ABAT_uc002czd.3_Missense_Mutation_p.P254L|ABAT_uc010buh.2_Missense_Mutation_p.P196L|ABAT_uc010bui.2_Missense_Mutation_p.P254L	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	254					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	CTGAAATACCCTCTGGAAGAG	0.537													66	72					0	0	0.003610	0	0
CLEC16A	23274	broad.mit.edu	37	16	11272445	11272445	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:11272445C>T	uc002dao.2	+	24	3290	c.3060C>T	c.(3058-3060)AGC>AGT	p.S1020S	CLEC16A_uc002dap.2_Silent_p.S107S	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	1020										ovary(1)|central_nervous_system(1)	2						GCCTCCGCAGCCTCACCGGCA	0.687													7	12					0	0	0.001984	0	0
DNAH3	55567	broad.mit.edu	37	16	20975188	20975188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:20975188C>T	uc010vbe.1	-	53	10018	c.10018G>A	c.(10018-10020)GAG>AAG	p.E3340K	DNAH3_uc010vbd.1_Missense_Mutation_p.E775K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3340					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTCAGTTCCTCGCTCTTCGTG	0.478													38	63					0	0	0.007835	0	0
DNAH3	55567	broad.mit.edu	37	16	20976176	20976176	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:20976176G>A	uc010vbe.1	-	53	9030	c.9030C>T	c.(9028-9030)GGC>GGT	p.G3010G	DNAH3_uc010vbd.1_Silent_p.G445G	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3010					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTGTAAAAGCGCCCAGGTAAG	0.527													21	25					0	0	0.008871	0	0
ORAI3	93129	broad.mit.edu	37	16	30964993	30964993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:30964993G>A	uc002eac.2	+	2	922	c.716G>A	c.(715-717)GGG>GAG	p.G239E		NM_152288	NP_689501	Q9BRQ5	ORAI3_HUMAN	ORAI calcium release-activated calcium modulator	239						integral to membrane	protein binding				0						GGGGCCCATGGGCCAGGCTGG	0.652											OREG0023742	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	51					0	0	0.003610	0	0
HYDIN	54768	broad.mit.edu	37	16	70954578	70954578	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:70954578G>A	uc002ezr.2	-	46	7826	c.7698C>T	c.(7696-7698)CCC>CCT	p.P2566P		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2567										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGTCTAGGAAGGGTACGCCCA	0.318													4	2					0	0	0.000602	0	0
HTA	283902	broad.mit.edu	37	16	73127079	73127079	+	RNA	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:73127079G>A	uc010vmq.1	+	2		c.737G>A				NR_027756				Homo sapiens cDNA clone IMAGE:4544545, partial cds.												0						AGAGGTTTTCGGGAAACTCTG	0.532													7	1					0	0	0.001984	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77369679	77369679	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:77369679G>A	uc002ffc.3	-	12	2252	c.1833C>T	c.(1831-1833)TTC>TTT	p.F611F	ADAMTS18_uc010chc.1_Silent_p.F199F|ADAMTS18_uc002ffe.1_Silent_p.F307F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	611	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GTCTCTCCTGGAACTTGACTC	0.542													72	13					0	0	0.003610	0	0
PIK3R5	23533	broad.mit.edu	37	17	8792125	8792125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:8792125C>T	uc002glt.2	-	10	1046	c.979G>A	c.(979-981)GAG>AAG	p.E327K	PIK3R5_uc010vuz.1_Missense_Mutation_p.E327K|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Silent_p.R275R|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	327				DILQEILLKEQELLQPGILGDDEEEEEEEEEVEEDLETDGH CAERDSLLSTSSLASHDSTLSLASSQASG -> GNIEGDPG PRRPDSAGLASLQTSCRKSCSRNRSYSSQGSWEMMKRRERR RRRWRRTWKLTGTVPREIPCS (in Ref. 6; AAW63121).	platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						acctcctcctcctcctcttcc	0.463													10	2					0	0	0.006214	0	0
DNAH9	1770	broad.mit.edu	37	17	11650884	11650884	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:11650884G>A	uc002gne.2	+	32	6479	c.6411G>A	c.(6409-6411)CTG>CTA	p.L2137L	DNAH9_uc010coo.2_Silent_p.L1431L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2137	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGGTCCAGCTGGAGGAGCTCC	0.582													13	1					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	17	21730972	21730972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:21730972G>A	uc002gyy.3	+	2	399	c.274G>A	c.(274-276)GAA>AAA	p.E92K						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		CATCACCCTGGAAGTGGAGCC	0.547													19	17					0	0	0.003954	0	0
RFFL	117584	broad.mit.edu	37	17	33343492	33343492	+	Silent	SNP	G	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:33343492G>T	uc002hin.1	-	5	956	c.783C>A	c.(781-783)ATC>ATA	p.I261I	RFFL_uc002hiq.2_Silent_p.I178I|RFFL_uc002him.1_Silent_p.I261I|RFFL_uc010cti.1_Silent_p.I267I|RFFL_uc002hip.1_Silent_p.I233I|RFFL_uc002hio.1_Silent_p.I261I	NM_001017368	NP_001017368	Q8WZ73	RFFL_HUMAN	rififylin	261	SAP 2.				apoptosis	membrane	ligase activity|zinc ion binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		TGCGAGCCAAGATCTCTTTCA	0.552													53	80					4.60343e-24	6.56198e-24	0.003610	1	0
SLFN11	91607	broad.mit.edu	37	17	33690173	33690173	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:33690173G>A	uc010ctp.2	-	4	1096	c.654C>T	c.(652-654)TTC>TTT	p.F218F	SLFN11_uc010ctq.2_Silent_p.F218F|SLFN11_uc002hjh.3_Silent_p.F218F|SLFN11_uc002hjg.3_Silent_p.F218F|SLFN11_uc010ctr.2_Silent_p.F218F	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	218						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GTTTTGTAGAGAACTGTTTAA	0.388													29	37					0	0	0.008361	0	0
GSDMB	55876	broad.mit.edu	37	17	38068632	38068632	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:38068632G>A	uc010cwj.2	-	2	359	c.354C>T	c.(352-354)ATC>ATT	p.I118I	GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Silent_p.I118I|GSDMB_uc002hth.2_Silent_p.I118I|GSDMB_uc010wem.1_Silent_p.I118I	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	118						cytoplasm				breast(1)|pancreas(1)	2						CCGATATCTTGATTTTCTGAT	0.463													34	33					0	0	0.004878	0	0
NBR1	4077	broad.mit.edu	37	17	41343555	41343555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:41343555C>T	uc010czd.2	+	10	1170	c.1030C>T	c.(1030-1032)CCT>TCT	p.P344S	NBR1_uc010diz.2_Missense_Mutation_p.P344S|NBR1_uc010whu.1_Missense_Mutation_p.P344S|NBR1_uc010whv.1_Missense_Mutation_p.P344S|NBR1_uc010whw.1_Missense_Mutation_p.P323S|NBR1_uc010whx.1_Missense_Mutation_p.P153S	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	344					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		CCCCAAGTCTCCTTTAGGCCG	0.488													4	17					0	0	0.000602	0	0
MARCH10	162333	broad.mit.edu	37	17	60814267	60814267	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:60814267C>A	uc010ddr.2	-	6	1200	c.962G>T	c.(961-963)GGG>GTG	p.G321V	MARCH10_uc002jag.3_Missense_Mutation_p.G321V|MARCH10_uc010dds.2_Missense_Mutation_p.G359V|MARCH10_uc002jah.2_Missense_Mutation_p.G320V|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	321							ligase activity|zinc ion binding				0						GGTCGATGTCCCCCCAAATCT	0.458													157	91					3.67947e-56	5.32233e-56	0.003610	1	0
ACE	1636	broad.mit.edu	37	17	61571427	61571427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:61571427G>A	uc002jau.1	+	21	3303	c.3281G>A	c.(3280-3282)AGG>AAG	p.R1094K	ACE_uc002jav.1_Missense_Mutation_p.R520K|ACE_uc010ddv.1_Missense_Mutation_p.R321K|ACE_uc010wpj.1_Missense_Mutation_p.R520K|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.R340K	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1094	Extracellular (Potential).|Peptidase M2 2.	Chloride 2.			arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TGGAGCCTCAGGTTCTGGAAC	0.398													12	24					0	0	0.000978	0	0
C17orf77	146723	broad.mit.edu	37	17	72588331	72588331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:72588331G>A	uc002jla.1	+	3	508	c.146G>A	c.(145-147)GGA>GAA	p.G49E	CD300LD_uc002jkz.2_Missense_Mutation_p.S4F	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	49						extracellular region					0						CAGAGATGGGGACAGCCACAT	0.562													39	25					0	0	0.004878	0	0
SLC16A5	9121	broad.mit.edu	37	17	73102104	73102104	+	Silent	SNP	T	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:73102104T>A	uc002jmr.2	+	7	1866	c.1494T>A	c.(1492-1494)GCT>GCA	p.A498A	SLC16A5_uc002jmt.2_Silent_p.A498A|SLC16A5_uc002jmu.2_Silent_p.A498A	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	498	Cytoplasmic (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	AGCaaacggctctgggctgga	0.279											OREG0024726	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	9					0	0	0.000602	0	0
GGA3	23163	broad.mit.edu	37	17	73238436	73238437	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:73238436_73238437CC>TT	uc002jni.1	-	8	736_737	c.727_728GG>AA	c.(727-729)GGG>AAG	p.G243K	GGA3_uc002jnj.1_Missense_Mutation_p.G210K|GGA3_uc010wrw.1_Missense_Mutation_p.G121K|GGA3_uc002jnk.1_Missense_Mutation_p.G171K|GGA3_uc010wrx.1_Missense_Mutation_p.G121K|GGA3_uc010wry.1_Missense_Mutation_p.G171K|GGA3_uc010wrz.1_3'UTR	NM_138619	NP_619525	Q9NZ52	GGA3_HUMAN	ADP-ribosylation factor binding protein 3	243	GAT.|Binds to ARF1 (in long isoform).				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|breast(1)	2			all cancers(21;2.39e-06)|Epithelial(20;2.38e-05)			CTCTCTGTCCCCGTCCGAAGAG	0.52													123	92					0	0	0.004672	0	0
UBE2O	63893	broad.mit.edu	37	17	74395839	74395839	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:74395839G>C	uc002jrm.3	-	9	1384	c.1319C>G	c.(1318-1320)GCC>GGC	p.A440G	UBE2O_uc002jrn.3_Missense_Mutation_p.A440G|UBE2O_uc002jrl.3_Missense_Mutation_p.A43G	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	440							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						CACTGGACTGGCAGAGCCATC	0.607													3	97					0	0	0.004672	0	0
DSG1	1828	broad.mit.edu	37	18	28923439	28923439	+	Missense_Mutation	SNP	G	A	A	rs137983671	byFrequency	TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr18:28923439G>A	uc002kwp.2	+	12	1926	c.1714G>A	c.(1714-1716)GAT>AAT	p.D572N	DSG1_uc010xbp.1_5'Flank	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	572	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GATCTGTTGTGATTGTGGAGG	0.448													54	50					0	0	0.003610	0	0
SLC14A2	8170	broad.mit.edu	37	18	43246155	43246155	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr18:43246155C>T	uc010dnj.2	+	13	1849	c.1528C>T	c.(1528-1530)CGA>TGA	p.R510*	SLC14A2_uc002lbe.2_Nonsense_Mutation_p.R510*	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	510						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						ATTTCCCTATCGATACCGGAA	0.512											OREG0024946	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	52					0	0	0.004878	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45556191	45556191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr18:45556191C>T	uc002lda.2	-	2	1316	c.1300G>A	c.(1300-1302)GAC>AAC	p.D434N	ZBTB7C_uc002ldb.2_Missense_Mutation_p.D434N|ZBTB7C_uc010dnu.2_Missense_Mutation_p.D443N|ZBTB7C_uc010dnv.2_Missense_Mutation_p.D456N|ZBTB7C_uc010dnw.2_Missense_Mutation_p.D434N	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	434	C2H2-type 3.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TTCTTGAGGTCGTAGTTGTGC	0.592													17	25					0	0	0.008871	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55027323	55027323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr18:55027323G>A	uc002lgn.2	+	4	1315	c.958G>A	c.(958-960)GGA>AGA	p.G320R		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	320	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		CCACTTGTATGGATTTTGGCC	0.423													18	13					0	0	0.007413	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471508	61471508	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr18:61471508G>A	uc002ljl.2	+	8	878	c.782G>A	c.(781-783)TGG>TAG	p.W261*	SERPINB7_uc002ljm.2_Nonsense_Mutation_p.W261*|SERPINB7_uc010xet.1_Nonsense_Mutation_p.W244*|SERPINB7_uc010dqg.2_Nonsense_Mutation_p.W261*	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	261					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				CTAATGGAATGGACCAATCCA	0.318													14	24					0	0	0.004007	0	0
C19orf21	126353	broad.mit.edu	37	19	757292	757292	+	Missense_Mutation	SNP	G	A	A	rs45591331		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:757292G>A	uc002lpo.2	+	2	429	c.346G>A	c.(346-348)GGG>AGG	p.G116R		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	116										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCAGAGGACGGGGAGGACAA	0.667													20	24					0	0	0.008871	0	0
MUC16	94025	broad.mit.edu	37	19	8995651	8995651	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:8995651C>T	uc002mkp.2	-	63	41541	c.41337G>A	c.(41335-41337)TCG>TCA	p.S13779S	MUC16_uc010dwi.2_Intron|MUC16_uc010dwj.2_Silent_p.S596S|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13781	Extracellular (Potential).|ANK 1.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCCAAATATCGAGGCTGGAG	0.463													12	11					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	9047148	9047148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:9047148G>A	uc002mkp.2	-	5	34687	c.34483C>T	c.(34483-34485)CCT>TCT	p.P11495S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11497	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTCTGCAGGATGAATGAGC	0.512													43	62					0	0	0.003214	0	0
MUC16	94025	broad.mit.edu	37	19	9058517	9058517	+	Silent	SNP	T	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:9058517T>C	uc002mkp.2	-	3	29133	c.28929A>G	c.(28927-28929)GAA>GAG	p.E9643E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9645	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTGACAACTTCATCGGAGA	0.507													14	18					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	9058519	9058519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:9058519C>T	uc002mkp.2	-	3	29131	c.28927G>A	c.(28927-28929)GAA>AAA	p.E9643K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9645	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGACAACTTCATCGGAGATG	0.502													13	19					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	9088734	9088734	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:9088734C>T	uc002mkp.2	-	1	3285	c.3081G>A	c.(3079-3081)ACG>ACA	p.T1027T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1027	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGGCCATTCGTGGTCTCTG	0.468													55	80					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9089865	9089865	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:9089865G>A	uc002mkp.2	-	1	2154	c.1950C>T	c.(1948-1950)TCC>TCT	p.S650S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	650	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGAGACACGGAGACTGGGA	0.552													42	59					0	0	0.003214	0	0
ELAVL3	1995	broad.mit.edu	37	19	11569368	11569368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:11569368C>T	uc002mry.1	-	4	772	c.392G>A	c.(391-393)GGG>GAG	p.G131E	ELAVL3_uc002mrx.1_Missense_Mutation_p.G131E	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	131	RRM 2.				cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						CTTGGGGAGCCCGCTGACGTA	0.607													24	43					0	0	0.003954	0	0
CACNA1A	773	broad.mit.edu	37	19	13419008	13419008	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:13419008G>A	uc010dze.2	-	14	2078	c.1842C>T	c.(1840-1842)ATC>ATT	p.I614I	CACNA1A_uc010dzc.2_Silent_p.I139I|CACNA1A_uc002mwy.3_Silent_p.I613I|CACNA1A_uc010xne.1_Silent_p.I139I	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	614	Cytoplasmic (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	ACAGGCTGATGATGGACTTCA	0.547													13	16					0	0	0.003163	0	0
IL27RA	9466	broad.mit.edu	37	19	14157020	14157020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:14157020C>T	uc002mxx.2	+	7	1246	c.823C>T	c.(823-825)CGT>TGT	p.R275C		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	275	Extracellular (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						GGTTGGAGGTCGTGAGCTGAG	0.577													90	104					0	0	0.003610	0	0
ZNF737	100129842	broad.mit.edu	37	19	20728090	20728090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:20728090G>A	uc002npa.2	-	4	1099	c.919C>T	c.(919-921)CAT>TAT	p.H307Y		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	307					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCTCCGCTATGAATTATCTTA	0.408													6	8					0	0	0.001984	0	0
NPHS1	4868	broad.mit.edu	37	19	36322264	36322264	+	Silent	SNP	C	T	T	rs115670171	by1000genomes	TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:36322264C>T	uc002oby.2	-	26	3321	c.3321G>A	c.(3319-3321)GAG>GAA	p.E1107E	NPHS1_uc010eem.1_RNA	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	1107	Cytoplasmic (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGACTCGGTCCTCTTCCGACC	0.587													40	51					0	0	0.006230	0	0
AKT2	208	broad.mit.edu	37	19	40747936	40747936	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:40747936C>A	uc002onf.2	-	6	744	c.482G>T	c.(481-483)GGA>GTA	p.G161V	AKT2_uc010egs.2_Missense_Mutation_p.G161V|AKT2_uc010egt.2_Missense_Mutation_p.G99V|AKT2_uc010xvj.1_Missense_Mutation_p.G99V|AKT2_uc010egu.1_Missense_Mutation_p.G99V|AKT2_uc010xvk.1_Missense_Mutation_p.G161V|AKT2_uc002one.2_Missense_Mutation_p.G57V	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	161	Protein kinase.|ATP (By similarity).				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			GCCAAAGGTTCCCTTGCCAAG	0.582			A		ovarian|pancreatic 								64	94					1.55545e-33	2.22531e-33	0.003610	1	0
PSG4	5672	broad.mit.edu	37	19	43699306	43699306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:43699306C>T	uc002ovy.2	-	4	931	c.829G>A	c.(829-831)GGT>AGT	p.G277S	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.G184S|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	277	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				AGGCTCTGACCATTTAGCCAC	0.438													102	129					0	0	0.003610	0	0
IRGQ	126298	broad.mit.edu	37	19	44099230	44099230	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:44099230C>T	uc002oww.2	-	1	379	c.261G>A	c.(259-261)GGG>GGA	p.G87G	IRGQ_uc010eiv.2_Silent_p.G87G|ZNF576_uc002owy.2_5'Flank|ZNF576_uc002owz.2_5'Flank|SRRM5_uc002oxb.2_5'Flank	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	87							protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				GTTCCCCGTTCCCCTCGGGTC	0.721													10	12					0	0	0.008291	0	0
ZNF229	7772	broad.mit.edu	37	19	44934705	44934705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:44934705C>T	uc002oze.1	-	6	685	c.251G>A	c.(250-252)GGA>GAA	p.G84E	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.G78E	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	84	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				CGTATCCTTTCCATTCTTGTC	0.398													17	13					0	0	0.006122	0	0
ZNF180	7733	broad.mit.edu	37	19	44981504	44981504	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:44981504G>A	uc002ozf.3	-	5	1476	c.1194C>T	c.(1192-1194)TCC>TCT	p.S398S	ZNF180_uc002ozh.3_Silent_p.S55S|ZNF180_uc002ozi.3_Silent_p.S371S|ZNF180_uc002ozg.3_Silent_p.S397S|ZNF180_uc010ejm.2_Silent_p.S373S	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	398	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				TTCTCTGATGGGAAACAAGGT	0.443													25	34					0	0	0.003330	0	0
RTN2	6253	broad.mit.edu	37	19	45996532	45996532	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:45996532G>A	uc002pcb.2	-	5	1147	c.919C>T	c.(919-921)CAA>TAA	p.Q307*	RTN2_uc002pcc.2_Intron|RTN2_uc002pcd.2_Intron	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	307						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		GGGCCCCTTTGGACCCAGCCA	0.552													35	41					0	0	0.005524	0	0
RTN2	6253	broad.mit.edu	37	19	45996534	45996534	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:45996534A>C	uc002pcb.2	-	5	1145	c.917T>G	c.(916-918)GTC>GGC	p.V306G	RTN2_uc002pcc.2_Intron|RTN2_uc002pcd.2_Intron	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	306						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		GCCCCTTTGGACCCAGCCAAT	0.552													35	38					0	0	0.005524	0	0
MYBPC2	4606	broad.mit.edu	37	19	50958492	50958492	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:50958492C>T	uc002psf.2	+	19	2193	c.2142C>T	c.(2140-2142)TTC>TTT	p.F714F		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	714	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		TGCGTGTCTTCGCCGTCAATG	0.493													41	45					0	0	0.002522	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647758	51647759	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:51647758_51647759GG>AA	uc002pvv.1	+	2	598_599	c.529_530GG>AA	c.(529-531)GGG>AAG	p.G177K	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	177	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CTGTGAGCAGGGGACGCCCCCT	0.644													35	64					0	0	0.004672	0	0
DPRX	503834	broad.mit.edu	37	19	54137921	54137921	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:54137921A>G	uc002qcf.1	+	2	216	c.165A>G	c.(163-165)ATA>ATG	p.I55M		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	55	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		AAATAGACATACACCCAACAG	0.428													29	26					0	0	0.002445	0	0
LILRB4	11006	broad.mit.edu	37	19	55176268	55176268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:55176268G>A	uc002qgp.2	+	5	1036	c.674G>A	c.(673-675)AGG>AAG	p.R225K	LILRB4_uc002qgq.2_Missense_Mutation_p.R225K|LILRB4_uc010ers.1_Missense_Mutation_p.R138K|LILRB4_uc002qgr.2_Missense_Mutation_p.R266K|LILRB4_uc010ert.2_Missense_Mutation_p.R266K|LILRB4_uc010eru.2_Missense_Mutation_p.R254K	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	225	Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GAGGATCCCAGGCCCTCACCC	0.557													9	11					0	0	0.008291	0	0
NLRP2	55655	broad.mit.edu	37	19	55508802	55508802	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:55508802G>A	uc002qij.2	+	12	3083	c.2997G>A	c.(2995-2997)GTG>GTA	p.V999V	NLRP2_uc010yfp.1_Silent_p.V976V|NLRP2_uc010esn.2_Silent_p.V975V|NLRP2_uc010eso.2_Silent_p.V996V|NLRP2_uc010esp.2_Silent_p.V977V	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	999	LRR 7.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CTAGTGGAGTGAAGATGCTGT	0.537													45	70					0	0	0.003610	0	0
GP6	51206	broad.mit.edu	37	19	55526398	55526398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr19:55526398G>A	uc002qik.2	-	8	939	c.911C>T	c.(910-912)GCT>GTT	p.A304V	GP6_uc002qil.2_Silent_p.G305G|GP6_uc010esq.2_Missense_Mutation_p.A286V	NM_016363	NP_057447	Q9HCN6	GPVI_HUMAN	glycoprotein VI (platelet) isoform 2	304	Cytoplasmic (Potential).				enzyme linked receptor protein signaling pathway|leukocyte migration|platelet activation	integral to plasma membrane	collagen binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.156)	GBM - Glioblastoma multiforme(193;0.0515)		CCTCTGCACAGCCCTGCCCCT	0.662													8	8					0	0	0.008291	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765902	18765902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:18765902G>A	uc002rcz.2	-	5	885	c.781C>T	c.(781-783)CGC>TGC	p.R261C	NT5C1B_uc002rcy.2_Missense_Mutation_p.R261C|NT5C1B_uc010exr.2_Missense_Mutation_p.R203C|NT5C1B_uc010yju.1_Missense_Mutation_p.R201C|NT5C1B_uc002rda.2_Missense_Mutation_p.R201C|NT5C1B_uc010yjv.1_Missense_Mutation_p.R278C|NT5C1B_uc010yjw.1_Missense_Mutation_p.R244C|NT5C1B_uc010exs.2_Missense_Mutation_p.R263C|NT5C1B_uc002rdb.1_Missense_Mutation_p.R53C	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	261					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				AGAGAGTTGCGGTCCAGCTGG	0.652													12	8					0	0	0.001368	0	0
CDC42EP3	10602	broad.mit.edu	37	2	37873499	37873499	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:37873499A>G	uc002rqi.1	-	2	1225	c.232T>C	c.(232-234)TTC>CTC	p.F78L		NM_006449	NP_006440	Q9UKI2	BORG2_HUMAN	Cdc42 effector protein 3	78					regulation of cell shape|signal transduction	actin cytoskeleton|cytoplasm|endomembrane system|membrane	cytoskeletal regulatory protein binding				0		all_hematologic(82;0.172)				TGCCCAGGGAACTGGCCCAGG	0.537													52	49					0	0	0.003610	0	0
C1D	10438	broad.mit.edu	37	2	68274371	68274371	+	Silent	SNP	G	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:68274371G>C	uc002sea.3	-	2	154	c.72C>G	c.(70-72)TCC>TCG	p.S24S	C1D_uc002seb.2_Silent_p.S24S|C1D_uc002sec.2_Silent_p.S24S|C1D_uc010fdc.2_Silent_p.S24S	NM_173177	NP_775269	Q13901	C1D_HUMAN	nuclear DNA-binding protein	24	Required for transcriptional repression (By similarity).				apoptosis|maturation of 5.8S rRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear exosome (RNase complex)|nucleolus	DNA binding|RNA binding				0						CAGCACCAATGGAATTCTCAA	0.338													11	20					0	0	0.008291	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95488775	95488775	+	RNA	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:95488775C>T	uc010fhp.2	-	10		c.943G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TCACTTCTTTCATGCCTTTCT	0.343													32	52					0	0	0.006999	0	0
GPR45	11250	broad.mit.edu	37	2	105858805	105858805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:105858805G>A	uc002tco.1	+	1	606	c.490G>A	c.(490-492)GGG>AGG	p.G164R		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	164	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						CTGCATCGCGGGGCCCTCGCT	0.697													8	12					0	0	0.006214	0	0
EDAR	10913	broad.mit.edu	37	2	109527452	109527452	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:109527452G>A	uc002teq.3	-	7	1037	c.606C>T	c.(604-606)ATC>ATT	p.I202I	EDAR_uc010fjn.2_Silent_p.I202I|EDAR_uc010yws.1_Silent_p.I202I	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	202	Helical; (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						tgatgaggacgatggcgatgg	0.468													20	15					0	0	0.008871	0	0
IL1F10	84639	broad.mit.edu	37	2	113832866	113832866	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:113832866C>T	uc002tiu.2	+	5	459	c.384C>T	c.(382-384)CCC>CCT	p.P128P	IL1F10_uc002tiv.2_Silent_p.P128P|IL1F10_uc002tiw.2_Silent_p.P120P	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	128						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						CGGCAGAGCCCCAGCAGCCAG	0.597													28	49					0	0	0.007291	0	0
MARCO	8685	broad.mit.edu	37	2	119750702	119750702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:119750702G>A	uc002tln.1	+	16	1387	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K	MARCO_uc010yyf.1_Missense_Mutation_p.E341K	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	419	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TCACCCAGGTGAAAACTCAGT	0.517													40	33					0	0	0.002522	0	0
THSD7B	80731	broad.mit.edu	37	2	138421106	138421106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:138421106G>A	uc002tva.1	+	25	4525	c.4525G>A	c.(4525-4527)GAT>AAT	p.D1509N	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AAAAATACATGATATTTTTAA	0.363													3	9					0	0	0.004672	0	0
ORC4L	5000	broad.mit.edu	37	2	148695749	148695749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:148695749G>A	uc002twi.2	-	13	1223	c.1088C>T	c.(1087-1089)TCC>TTC	p.S363F	ORC4L_uc002twj.2_Missense_Mutation_p.S363F|ORC4L_uc010zbo.1_Missense_Mutation_p.S289F|ORC4L_uc010zbp.1_Missense_Mutation_p.S146F|ORC4L_uc010fnr.2_Intron|ORC4L_uc010zbq.1_Missense_Mutation_p.S279F|ORC4L_uc002twk.2_Missense_Mutation_p.S363F|ORC4L_uc002twl.1_5'Flank	NM_181741	NP_859525	O43929	ORC4_HUMAN	origin recognition complex subunit 4	363					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	ATP binding|DNA replication origin binding|nucleoside-triphosphatase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.0963)|COAD - Colon adenocarcinoma(177;0.203)		ATTATAAACGGAATGTGCTTT	0.318													10	14					0	0	0.006214	0	0
LYPD6	130574	broad.mit.edu	37	2	150327209	150327209	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:150327209T>C	uc002twy.2	+	5	556	c.361T>C	c.(361-363)TGT>CGT	p.C121R	LYPD6_uc010fnt.2_RNA|LYPD6_uc002twz.2_RNA|LYPD6_uc002txa.2_Missense_Mutation_p.C121R	NM_194317	NP_919298	Q86Y78	LYPD6_HUMAN	LY6/PLAUR domain containing 6 precursor	121	UPAR/Ly6.					extracellular region					0				BRCA - Breast invasive adenocarcinoma(221;0.0667)		CTGCACTTCTTGTTGTGAAGG	0.468													23	48					0	0	0.004656	0	0
SCN9A	6335	broad.mit.edu	37	2	167060517	167060517	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:167060517G>A	uc010fpl.2	-	26	5030	c.4689C>T	c.(4687-4689)TTC>TTT	p.F1563F	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1574	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ATCCTACAGTGAAGTAGTAGT	0.299													12	11					0	0	0.001855	0	0
SCN7A	6332	broad.mit.edu	37	2	167322436	167322436	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:167322436G>A	uc002udu.1	-	7	853	c.726C>T	c.(724-726)ATC>ATT	p.I242I	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	242	Helical; Name=S5 of repeat I; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACAGAGTTAGGATAATGACAC	0.388													13	14					0	0	0.001368	0	0
XIRP2	129446	broad.mit.edu	37	2	168108159	168108159	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:168108159C>T	uc002udx.2	+	8	10275	c.10257C>T	c.(10255-10257)TTC>TTT	p.F3419F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.F3244F|XIRP2_uc010fpq.2_Silent_p.F3197F|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3244					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTGAACATTTCTCAGGCATGG	0.433													24	33					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179469027	179469027	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:179469027C>T	uc010zfg.1	-	231	46907	c.46683G>A	c.(46681-46683)TGG>TGA	p.W15561*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W9256*|TTN_uc010zfi.1_Nonsense_Mutation_p.W9189*|TTN_uc010zfj.1_Nonsense_Mutation_p.W9064*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16488							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGATAAGTTTCCAGATCTAGA	0.338													9	17					0	0	0.006214	0	0
SDPR	8436	broad.mit.edu	37	2	192701344	192701344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:192701344C>T	uc002utb.2	-	2	913	c.583G>A	c.(583-585)GAA>AAA	p.E195K		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	195						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TGCAGGGTTTCCTCCAGGGAT	0.557													17	25					0	0	0.006122	0	0
ZDBF2	57683	broad.mit.edu	37	2	207173805	207173805	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:207173805A>T	uc002vbp.2	+	5	4803	c.4553A>T	c.(4552-4554)AAA>ATA	p.K1518I		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1518							nucleic acid binding|zinc ion binding			ovary(3)	3						GGATCAGTCAAAGAAACCCAC	0.398													12	25					0	0	0.003163	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217340128	217340128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:217340128C>T	uc002vgc.3	+	15	2711	c.2381C>T	c.(2380-2382)TCC>TTC	p.S794F	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.S794F|SMARCAL1_uc010fvg.2_Missense_Mutation_p.S772F	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	794	Helicase C-terminal.				chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		CTCACCTTCTCCTCGGCTGAC	0.592									Schimke_Immuno-Osseous_Dysplasia				37	41					0	0	0.002222	0	0
SLC4A3	6508	broad.mit.edu	37	2	220502373	220502373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:220502373G>A	uc002vmp.3	+	17	2875	c.2606G>A	c.(2605-2607)GGT>GAT	p.G869D	SLC4A3_uc002vmo.3_Missense_Mutation_p.G896D|SLC4A3_uc010fwm.2_Missense_Mutation_p.G419D|SLC4A3_uc010fwn.1_Missense_Mutation_p.G378D	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	869	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTGGATGCTGGTCTGGAGCCA	0.642													14	19					0	0	0.003163	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447476	226447476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:226447476C>T	uc002voe.2	+	4	1518	c.1343C>T	c.(1342-1344)CCC>CTC	p.P448L	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.P218L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	448	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TCCCTGACTCCCCTGAGCCTC	0.632													10	16					0	0	0.006214	0	0
IRS1	3667	broad.mit.edu	37	2	227662451	227662451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:227662451G>A	uc002voh.3	-	1	1056	c.1004C>T	c.(1003-1005)ACC>ATC	p.T335I		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	335	Ser-rich.				fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		GCGGGACATGGTGCCTTCGCC	0.716											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	50					0	0	0.003610	0	0
SP140	11262	broad.mit.edu	37	2	231150502	231150502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr2:231150502G>A	uc002vql.2	+	17	1715	c.1600G>A	c.(1600-1602)GAA>AAA	p.E534K	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Missense_Mutation_p.E420K|SP140_uc002vqm.2_Missense_Mutation_p.E474K|SP140_uc010fxl.2_Missense_Mutation_p.E507K	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	534					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GGTCTCCAGTGAAAAGAAGGC	0.458													43	60					0	0	0.003610	0	0
FRG1B	284802	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr20:29625941A>T	uc010ztl.1	+	2	127	c.95A>T	c.(94-96)GAT>GTT	p.D32V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGCATTCAGATGCAATTGGA	0.333													4	55					0	0	0.000602	0	0
DHX35	60625	broad.mit.edu	37	20	37653908	37653908	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr20:37653908C>T	uc002xjh.2	+	18	1718	c.1707C>T	c.(1705-1707)TTC>TTT	p.F569F	DHX35_uc010zwa.1_Silent_p.F414F|DHX35_uc010zwb.1_Silent_p.F414F|DHX35_uc010zwc.1_Silent_p.F538F	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	569						catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGGAACATTTCCTGAATTACA	0.418													71	84					0	0	0.003610	0	0
ZNFX1	57169	broad.mit.edu	37	20	47865097	47865097	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr20:47865097C>T	uc002xui.2	-	14	4711	c.4464G>A	c.(4462-4464)CGG>CGA	p.R1488R		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1488	NF-X1-type 5.						metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TCTGACAGGTCCGCTGGCAGG	0.597													18	21					0	0	0.007413	0	0
ZNF831	128611	broad.mit.edu	37	20	57828183	57828183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr20:57828183G>A	uc002yan.2	+	4	4178	c.4178G>A	c.(4177-4179)CGA>CAA	p.R1393Q		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1393						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ATGGACAAACGAACTGTGAAG	0.468													46	63					0	0	0.003610	0	0
TPTE	7179	broad.mit.edu	37	21	10996137	10996137	+	RNA	SNP	T	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr21:10996137T>A	uc002yis.1	-	12		c.2049A>T						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AATCCACCAATACCTATCCAA	0.378													17	23					0	0	0.004007	0	0
BAGE2	85319	broad.mit.edu	37	21	11058201	11058201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr21:11058201G>A	uc002yit.1	-	3	447	c.239C>T	c.(238-240)TCC>TTC	p.S80F	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GACAAAGCAGGAAGATGTGAC	0.398													9	53					0	0	0.004482	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19704416	19704416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr21:19704416G>A	uc002ykw.2	-	14	1670	c.1639C>T	c.(1639-1641)CCT>TCT	p.P547S		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	547	Extracellular (Potential).|CUB 2.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GCCAGATTAGGGTAGCTGTTT	0.418													27	38					0	0	0.001786	0	0
RSPH1	89765	broad.mit.edu	37	21	43913099	43913099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr21:43913099C>T	uc002zbg.2	-	2	250	c.145G>A	c.(145-147)GAA>AAA	p.E49K		NM_080860	NP_543136	Q8WYR4	RSPH1_HUMAN	testis-specific gene A2	49	MORN 2.				meiosis	cytosol|nucleus				ovary(1)	1						TTACCGAATTCGTAGCTCCCT	0.502													59	82					0	0	0.003610	0	0
C21orf29	54084	broad.mit.edu	37	21	45953807	45953807	+	Splice_Site	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr21:45953807C>T	uc002zfe.1	-	3	370	c.304_splice	c.e3-1	p.R102_splice	C21orf29_uc010gpv.1_Splice_Site_p.R34_splice	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor						cell adhesion	extracellular region	structural molecule activity				0						ACTCGTTCCTCTGTGGAGAGC	0.398													16	7					0	0	0.004007	0	0
ADARB1	104	broad.mit.edu	37	21	46596439	46596439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr21:46596439G>A	uc002zgy.2	+	4	1258	c.823G>A	c.(823-825)GAA>AAA	p.E275K	ADARB1_uc002zgr.2_Missense_Mutation_p.E275K|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.E275K|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.E275K|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA|ADARB1_uc011afo.1_Missense_Mutation_p.E324K	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	275	DRBM 2.				adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		TCAGTTCTTTGAAGGCTCGGG	0.577													30	30					0	0	0.008361	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688731	26688731	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr22:26688731C>T	uc003acb.2	+	2	610	c.454C>T	c.(454-456)CAG>TAG	p.Q152*	SEZ6L_uc003acc.2_Nonsense_Mutation_p.Q152*|SEZ6L_uc011akc.1_Nonsense_Mutation_p.Q152*|SEZ6L_uc003acd.2_Nonsense_Mutation_p.Q152*|SEZ6L_uc011akd.1_Nonsense_Mutation_p.Q152*|SEZ6L_uc003ace.2_Nonsense_Mutation_p.Q152*|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	152	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GCCAGCGTCCCAGGGCCTAGA	0.662													13	13					0	0	0.001855	0	0
C22orf28	51493	broad.mit.edu	37	22	32797884	32797884	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr22:32797884A>G	uc003amm.2	-	5	478	c.347T>C	c.(346-348)GTC>GCC	p.V116A	C22orf28_uc011ama.1_RNA	NM_014306	NP_055121	Q9Y3I0	RTCB_HUMAN	hypothetical protein LOC51493	116					cell-matrix adhesion|substrate adhesion-dependent cell spreading|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|tRNA-splicing ligase complex	ATP binding|metal ion binding|RNA ligase (ATP) activity|vinculin binding				0						GTCAAACCCGACACCACCTAC	0.433													16	15					0	0	0.004007	0	0
TCF20	6942	broad.mit.edu	37	22	42606385	42606385	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr22:42606385G>T	uc003bcj.1	-	1	5061	c.4927C>A	c.(4927-4929)CTT>ATT	p.L1643I	TCF20_uc003bck.1_Missense_Mutation_p.L1643I|TCF20_uc003bnt.2_Missense_Mutation_p.L1643I	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1643					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						ACGGCTCCAAGTTCACACTTA	0.448													42	79					1.0096e-33	1.44968e-33	0.003610	1	0
TCF20	6942	broad.mit.edu	37	22	42607026	42607026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr22:42607026G>A	uc003bcj.1	-	1	4420	c.4286C>T	c.(4285-4287)CCT>CTT	p.P1429L	TCF20_uc003bck.1_Missense_Mutation_p.P1429L|TCF20_uc003bnt.2_Missense_Mutation_p.P1429L	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1429					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CCTTGGAAGAGGTTTCTCTAC	0.517													70	68					0	0	0.003610	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654143	46654143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr22:46654143C>T	uc003bhh.2	-	1	5077	c.5077G>A	c.(5077-5079)GAA>AAA	p.E1693K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1693	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		ATTCTGATTTCATCTTCTGTA	0.423													24	29					0	0	0.004656	0	0
RAD18	56852	broad.mit.edu	37	3	8977684	8977684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:8977684G>A	uc003brd.2	-	7	837	c.760C>T	c.(760-762)CGT>TGT	p.R254C	RAD18_uc003bre.2_RNA	NM_020165	NP_064550	Q9NS91	RAD18_HUMAN	postreplication repair protein hRAD18p	254	SAP.				DNA repair	nucleus|replication fork	damaged DNA binding|ligase activity|ubiquitin protein ligase binding|Y-form DNA binding|zinc ion binding			skin(3)|ovary(2)	5				OV - Ovarian serous cystadenocarcinoma(96;0.0552)		TTTAAATCACGATCAGAGAGC	0.353								Rad6_pathway					26	22					0	0	0.005443	0	0
IL17RE	132014	broad.mit.edu	37	3	9953263	9953263	+	Silent	SNP	C	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:9953263C>A	uc003btu.2	+	13	1326	c.1209C>A	c.(1207-1209)CCC>CCA	p.P403P	CIDEC_uc003bto.2_Intron|IL17RE_uc011atn.1_RNA|IL17RE_uc003btw.2_Silent_p.P403P|IL17RE_uc003btx.2_Silent_p.P287P|IL17RE_uc010hcq.2_Silent_p.P403P|IL17RE_uc003bty.2_RNA	NM_153483	NP_705616	Q8NFR9	I17RE_HUMAN	interleukin 17 receptor E isoform 1	403	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane	receptor activity			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(96;5.34e-64)		TGGTGCCCCCCGTGTACACTG	0.572													5	100					0.00116845	0.00163	0.001168	1	0
HRH1	3269	broad.mit.edu	37	3	11300800	11300800	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:11300800A>G	uc010hdr.2	+	2	419	c.77A>G	c.(76-78)CAG>CGG	p.Q26R	HRH1_uc010hds.2_Missense_Mutation_p.Q26R|HRH1_uc010hdt.2_Missense_Mutation_p.Q26R|HRH1_uc003bwb.3_Missense_Mutation_p.Q26R	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	26	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	GCCAGCCCCCAGCTGATGCCC	0.577													20	26					0	0	0.001523	0	0
CAND2	23066	broad.mit.edu	37	3	12859143	12859143	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:12859143C>T	uc003bxk.2	+	10	2761	c.2712C>T	c.(2710-2712)ATC>ATT	p.I904I	CAND2_uc003bxj.2_Silent_p.I811I	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	904	HEAT 19.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						TGGAGCAGATCGAGGCTGAGC	0.667													36	38					0	0	0.004878	0	0
HDAC11	79885	broad.mit.edu	37	3	13538321	13538321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:13538321C>T	uc003bxy.2	+	4	471	c.338C>T	c.(337-339)CCC>CTC	p.P113L	HDAC11_uc010heb.2_Missense_Mutation_p.P85L|HDAC11_uc011aux.1_Intron|HDAC11_uc003bxz.2_Missense_Mutation_p.P85L|HDAC11_uc011auy.1_Missense_Mutation_p.P62L	NM_024827	NP_079103	Q96DB2	HDA11_HUMAN	histone deacetylase 11 isoform 1	113	Histone deacetylase.			P -> A (in Ref. 3).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex|plasma membrane	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding			ovary(2)	2						GTGCTGAGGCCCCTTCGGACC	0.582											OREG0015411	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	25					0	0	0.004007	0	0
DAZL	1618	broad.mit.edu	37	3	16640091	16640091	+	Silent	SNP	A	G	G			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:16640091A>G	uc003cbb.2	-	2	312	c.18T>C	c.(16-18)CCT>CCC	p.P6P	DAZL_uc003cba.2_Silent_p.P26P	NM_001351	NP_001342	Q92904	DAZL_HUMAN	deleted in azoospermia-like	6					germ cell development|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding|translation activator activity				0						TTGGAGTTTCAGGATTTGCAG	0.363													3	113					0	0	0.004672	0	0
CLASP2	23122	broad.mit.edu	37	3	33558658	33558658	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:33558658G>A	uc003cfu.2	-	34	4150	c.3796C>T	c.(3796-3798)CTA>TTA	p.L1266L	CLASP2_uc003cfs.2_Silent_p.L473L|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Silent_p.L866L	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	1275										ovary(3)|central_nervous_system(1)	4						GAATGATCTAGGGAAAGATCT	0.363													20	24					0	0	0.008871	0	0
SLC22A14	9389	broad.mit.edu	37	3	38348017	38348017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:38348017G>A	uc010hhc.1	+	2	542	c.500G>A	c.(499-501)CGA>CAA	p.R167Q	SLC22A14_uc003cia.2_Missense_Mutation_p.R167Q|SLC22A14_uc003cib.2_Missense_Mutation_p.R167Q|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	167	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		GCTAAGAAGCGATCGCTGATC	0.423													33	37					0	0	0.004289	0	0
SCN10A	6336	broad.mit.edu	37	3	38760281	38760281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:38760281C>T	uc003ciq.2	-	20	3544	c.3544G>A	c.(3544-3546)GTG>ATG	p.V1182M		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1182	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AAAGCTTTCACCGTGGGCTTC	0.517													19	21					0	0	0.001523	0	0
COL7A1	1294	broad.mit.edu	37	3	48602893	48602893	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:48602893G>C	uc003ctz.2	-	115	8478	c.8477C>G	c.(8476-8478)TCC>TGC	p.S2826C	UCN2_uc003cty.1_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2826	Nonhelical region (NC2).				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ATGGAGCTGGGAGCCGGCAGT	0.652													8	7					0	0	0.004482	0	0
MST1R	4486	broad.mit.edu	37	3	49928866	49928866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:49928866C>T	uc003cxy.3	-	16	3764	c.3500G>A	c.(3499-3501)GGT>GAT	p.G1167D	MST1R_uc011bdc.1_Missense_Mutation_p.G46D	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	1167	Cytoplasmic (Potential).|Protein kinase.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		GAGCAGGTCACCGTGGCACAT	0.607													18	28					0	0	0.004990	0	0
RBM5	10181	broad.mit.edu	37	3	50137972	50137972	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:50137972C>T	uc003cyg.2	+	6	565	c.417C>T	c.(415-417)AGC>AGT	p.S139S	RBM5_uc003cyf.2_3'UTR|RBM5_uc011bdj.1_Silent_p.S83S|RBM5_uc011bdk.1_Intron	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	139	RRM 1.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TAGGTGTAAGCCGTGGTTTCG	0.453													19	22					0	0	0.001882	0	0
ALAS1	211	broad.mit.edu	37	3	52238818	52238818	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:52238818C>T	uc003dcy.1	+	6	1024	c.687C>T	c.(685-687)TTC>TTT	p.F229F	ALAS1_uc003dcz.1_Silent_p.F229F|ALAS1_uc011bec.1_Silent_p.F246F	NM_000688	NP_000679	P13196	HEM1_HUMAN	5-aminolevulinate synthase 1 precursor	229					heme biosynthetic process	mitochondrial matrix	5-aminolevulinate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(2)|upper_aerodigestive_tract(1)	3				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.000583)|KIRC - Kidney renal clear cell carcinoma(197;0.000751)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CACACATCTTCCCCATGGCAG	0.438													31	25					0	0	0.008361	0	0
DNAH1	25981	broad.mit.edu	37	3	52366279	52366279	+	Silent	SNP	G	A	A	rs141835525	by1000genomes	TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:52366279G>A	uc011bef.1	+	8	1416	c.1155G>A	c.(1153-1155)ACG>ACA	p.T385T	DNAH1_uc003ddt.1_Silent_p.T385T	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	385	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GCAAGAACACGGAAGCACTGC	0.577													11	9					0	0	0.001368	0	0
LNP1	348801	broad.mit.edu	37	3	100174679	100174679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:100174679C>T	uc003dtx.3	+	4	1726	c.446C>T	c.(445-447)TCC>TTC	p.S149F	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	149											0						GAGATAAAATCCCGAAAGAAA	0.438													26	20					0	0	0.007291	0	0
MBD4	8930	broad.mit.edu	37	3	129152700	129152700	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:129152700C>T	uc003emh.1	-	5	1580	c.1404G>A	c.(1402-1404)CGG>CGA	p.R468R	MBD4_uc003emi.1_Silent_p.R468R|MBD4_uc003emj.1_Silent_p.R462R|MBD4_uc003emk.1_Silent_p.R150R|MBD4_uc011bkw.1_Silent_p.R468R	NM_003925	NP_003916	O95243	MBD4_HUMAN	methyl-CpG binding domain protein 4	468					depyrimidination	nucleoplasm	DNA N-glycosylase activity|endodeoxyribonuclease activity|protein binding|satellite DNA binding			ovary(1)|lung(1)	2						AACCTGAGGTCCGATTGAGAA	0.269								BER_DNA_glycosylases					16	31					0	0	0.004007	0	0
ESYT3	83850	broad.mit.edu	37	3	138181033	138181033	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:138181033C>T	uc003esk.2	+	8	1126	c.900C>T	c.(898-900)CGC>CGT	p.R300R	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	300	C2 1.					integral to membrane|plasma membrane					0						CCAACCTGCGCTTCCCTCTGC	0.577													87	115					0	0	0.003610	0	0
FAM194A	131831	broad.mit.edu	37	3	150384710	150384710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:150384710G>A	uc003eyg.2	-	13	1649	c.1592C>T	c.(1591-1593)CCC>CTC	p.P531L	FAM194A_uc003eyh.2_Missense_Mutation_p.P385L	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	531										skin(2)|ovary(1)	3						TGAAACAAAGGGTGAGGAAGT	0.408													32	50					0	0	0.001786	0	0
AADAC	13	broad.mit.edu	37	3	151535168	151535168	+	Silent	SNP	G	A	A	rs139594209		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:151535168G>A	uc003eze.2	+	2	243	c.153G>A	c.(151-153)GAG>GAA	p.E51E		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	51	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			CATTTGTGGAGCTCCTGGGAC	0.398													19	13					0	0	0.001523	0	0
PLCH1	23007	broad.mit.edu	37	3	155215191	155215191	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:155215191C>T	uc011bok.1	-	14	2053	c.1776G>A	c.(1774-1776)AGG>AGA	p.R592R	PLCH1_uc011boj.1_Silent_p.R592R|PLCH1_uc011bol.1_Silent_p.R574R	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	592					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TCATGGTTTTCCTTCGGCGAC	0.463													22	33					0	0	0.003954	0	0
SI	6476	broad.mit.edu	37	3	164733000	164733000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:164733000C>T	uc003fei.2	-	33	3972	c.3910G>A	c.(3910-3912)GAA>AAA	p.E1304K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1304	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GTCTTTGTTTCATTTCCTGAA	0.353										HNSCC(35;0.089)			13	16					0	0	0.001855	0	0
YEATS2	55689	broad.mit.edu	37	3	183516739	183516739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:183516739C>T	uc003fly.2	+	23	3482	c.3287C>T	c.(3286-3288)CCA>CTA	p.P1096L		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	1096					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GCCCCAACTCCAGTTGTCCCC	0.463													53	73					0	0	0.003610	0	0
HTR3C	170572	broad.mit.edu	37	3	183773996	183773996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:183773996C>T	uc003fmk.2	+	4	345	c.311C>T	c.(310-312)CCA>CTA	p.P104L		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	104	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			AATTGGAACCCAAAAGAGTGT	0.507													33	44					0	0	0.002096	0	0
ATP13A4	84239	broad.mit.edu	37	3	193201725	193201725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr3:193201725C>T	uc003ftd.2	-	8	916	c.808G>A	c.(808-810)GCT>ACT	p.A270T	ATP13A4_uc003fte.1_Missense_Mutation_p.A270T|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	270	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TGGAACTTACCTTTTCTCCCA	0.333													40	68					0	0	0.008740	0	0
ZNF721	170960	broad.mit.edu	37	4	437361	437361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:437361G>A	uc003gag.2	-	3	1586	c.895C>T	c.(895-897)CAT>TAT	p.H299Y	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.H331Y|ZNF721_uc010ibe.2_Missense_Mutation_p.H287Y	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	299						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCTCCAGTATGAATTCTCCTA	0.378													28	30					0	0	0.002096	0	0
SORCS2	57537	broad.mit.edu	37	4	7726903	7726903	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:7726903G>A	uc003gkb.3	+	20	2634	c.2634G>A	c.(2632-2634)CTG>CTA	p.L878L	SORCS2_uc011bwi.1_Silent_p.L706L	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	878	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						CCCTCTACCTGGAGGTGGTTC	0.552													21	40					0	0	0.003330	0	0
CPZ	8532	broad.mit.edu	37	4	8602950	8602950	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:8602950G>A	uc003glm.2	+	3	348	c.222G>A	c.(220-222)GAG>GAA	p.E74E	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_5'UTR|CPZ_uc003glo.2_Silent_p.E63E|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	74	FZ.				proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						AGGTGGTGGAGGCCAGCTCCG	0.652													15	19					0	0	0.006122	0	0
TLR6	10333	broad.mit.edu	37	4	38829058	38829058	+	Silent	SNP	G	A	A	rs56107625		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:38829058G>A	uc003gtm.2	-	1	2103	c.2037C>T	c.(2035-2037)GTC>GTT	p.V679V	TLR6_uc010ifg.1_Silent_p.V679V	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	679	TIR.|Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						TCTTGCCAGGGACAAAGTTTC	0.393													26	41					0	0	0.004656	0	0
UGT2B15	7366	broad.mit.edu	37	4	69520828	69520828	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:69520828G>A	uc011cal.1	-	4	1116	c.1078C>T	c.(1078-1080)CAG>TAG	p.Q360*		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	360					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						AGGTCATTCTGGGGTAACCAC	0.358													8	147					0	0	0.001368	0	0
AFM	173	broad.mit.edu	37	4	74350006	74350006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:74350006G>A	uc003hhb.2	+	3	200	c.169G>A	c.(169-171)GAA>AAA	p.E57K		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	57	Albumin 1.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GTATGTTCAGGAAGCAACCTT	0.408													22	28					0	0	0.002780	0	0
PARM1	25849	broad.mit.edu	37	4	75937934	75937934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:75937934G>A	uc003hih.1	+	2	583	c.343G>A	c.(343-345)GGA>AGA	p.G115R		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	115	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						AACAAGCGGTGGAGTCCACTT	0.567													30	57					0	0	0.007291	0	0
HERC5	51191	broad.mit.edu	37	4	89390338	89390338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:89390338C>T	uc003hrt.2	+	9	1318	c.1165C>T	c.(1165-1167)CCT>TCT	p.P389S	HERC5_uc011cdm.1_Missense_Mutation_p.P27S	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	389					innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		GAGGACAATTCCTACTCTGAA	0.398													9	20					0	0	0.008291	0	0
GRID2	2895	broad.mit.edu	37	4	94137897	94137897	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:94137897C>T	uc011cdt.1	+	6	1056	c.798C>T	c.(796-798)AAC>AAT	p.N266N	GRID2_uc010ikx.2_Silent_p.N266N|GRID2_uc011cdu.1_Silent_p.N171N|GRID2_uc010ikz.1_Translation_Start_Site	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	266	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGGAAATAAACGATGTGGACG	0.373													33	44					0	0	0.003755	0	0
NDST4	64579	broad.mit.edu	37	4	115997465	115997465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:115997465G>A	uc003ibu.2	-	2	1407	c.728C>T	c.(727-729)TCC>TTC	p.S243F	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	243	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GGATGACAGGGATTTTTCTGT	0.423													27	31					0	0	0.008361	0	0
FAT4	79633	broad.mit.edu	37	4	126373627	126373627	+	Missense_Mutation	SNP	G	A	A	rs142857910		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:126373627G>A	uc003ifj.3	+	9	11456	c.11456G>A	c.(11455-11457)CGA>CAA	p.R3819Q	FAT4_uc011cgp.1_Missense_Mutation_p.R2117Q|FAT4_uc003ifi.1_Missense_Mutation_p.R1297Q	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3819	Extracellular (Potential).|EGF-like 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGCTGTCTACGAAGATTGGCT	0.493													22	18					0	0	0.001882	0	0
TKTL2	84076	broad.mit.edu	37	4	164393087	164393087	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr4:164393087C>T	uc003iqp.3	-	1	1961	c.1800G>A	c.(1798-1800)GGG>GGA	p.G600G		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	600						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CACTAGTTTTCCCACGTTGAG	0.438													21	40					0	0	0.008871	0	0
DNAH5	1767	broad.mit.edu	37	5	13769713	13769713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr5:13769713C>T	uc003jfd.2	-	57	9659	c.9617G>A	c.(9616-9618)GGA>GAA	p.G3206E	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3206	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTTCCAATCCAGTATTCAT	0.418									Kartagener_syndrome				48	10					0	0	0.003610	0	0
GPR98	84059	broad.mit.edu	37	5	90050985	90050985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr5:90050985G>A	uc003kju.2	+	55	11659	c.11563G>A	c.(11563-11565)GAA>AAA	p.E3855K	GPR98_uc003kjt.2_Missense_Mutation_p.E1561K|GPR98_uc003kjv.2_Missense_Mutation_p.E1455K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3855	Extracellular (Potential).|Calx-beta 25.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGCTCATGCCGAAGTTTCCAT	0.313													6	1					0	0	0.001168	0	0
PCDHA8	56140	broad.mit.edu	37	5	140223197	140223197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr5:140223197C>T	uc003lhs.2	+	1	2291	c.2291C>T	c.(2290-2292)CCA>CTA	p.P764L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P764L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	764	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTGAGGGGCCACCGAAGACG	0.602													13	3					0	0	0.001855	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481402	140481402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr5:140481402C>T	uc003lio.2	+	1	1169	c.1169C>T	c.(1168-1170)CCC>CTC	p.P390L	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	390	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACAATCTCCCCTTCTTCCTG	0.468													15	6					0	0	0.004990	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530629	140530629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr5:140530629C>T	uc003lir.2	+	1	791	c.791C>T	c.(790-792)TCA>TTA	p.S264L	PCDHB6_uc011dah.1_Missense_Mutation_p.S128L	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	264	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTACCGTCTCAGCCAGAGAT	0.488													16	2					0	0	0.004007	0	0
SERPINB9	5272	broad.mit.edu	37	6	2890499	2890499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:2890499C>T	uc003mug.2	-	7	1150	c.1029G>A	c.(1027-1029)ATG>ATA	p.M343I	uc003mue.2_Intron|SERPINB9_uc003muf.2_Missense_Mutation_p.M146I	NM_004155	NP_004146	P50453	SPB9_HUMAN	serpin peptidase inhibitor, clade B, member 9	343					anti-apoptosis|cellular response to estrogen stimulus|immune response|mast cell mediated immunity|regulation of proteolysis	cytosol|extracellular space|nucleus	caspase inhibitor activity|protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.108)				GGCCAGATTCCATGCAGCACT	0.532													23	49					0	0	0.003330	0	0
STK19	8859	broad.mit.edu	37	6	31940123	31940123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:31940123G>A	uc003nyv.2	+	2	393	c.265G>A	c.(265-267)GAC>AAC	p.D89N	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.D46N|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.D89N|STK19_uc011dox.1_Missense_Mutation_p.D46N|STK19_uc003nyw.2_Missense_Mutation_p.D89N|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	89			D -> N (in a metastatic melanoma sample; somatic mutation).			nucleus	ATP binding|protein binding|protein serine/threonine kinase activity	p.D89N(2)		skin(4)	4						TGCGCCGGAAGACCCTATTTT	0.582													26	87					0	0	0.007291	0	0
ATF6B	1388	broad.mit.edu	37	6	32087646	32087646	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:32087646G>A	uc003nzn.2	-	9	954	c.921C>T	c.(919-921)ATC>ATT	p.I307I	TNXB_uc010jts.1_5'Flank|ATF6B_uc003nzm.1_5'Flank|ATF6B_uc003nzo.2_Silent_p.I304I|ATF6B_uc003nzp.1_5'UTR	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	307	Cytoplasmic (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GAGCGGGAACGATGCTCTTCC	0.592													97	210					0	0	0.003610	0	0
LMBRD1	55788	broad.mit.edu	37	6	70451759	70451759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:70451759G>A	uc003pfa.2	-	6	599	c.484C>T	c.(484-486)CCA>TCA	p.P162S	LMBRD1_uc003pey.2_5'UTR|LMBRD1_uc003pez.2_Missense_Mutation_p.P89S|LMBRD1_uc010kal.2_Missense_Mutation_p.P89S|LMBRD1_uc003pfb.2_RNA	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	162	Helical; Name=4; (Potential).				interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						ACATTCAATGGAACAAAGGCA	0.269													23	23					0	0	0.003954	0	0
C6orf57	135154	broad.mit.edu	37	6	71289239	71289239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:71289239G>A	uc003pfq.1	+	2	207	c.187G>A	c.(187-189)GAT>AAT	p.D63N		NM_145267	NP_660310	Q5VUM1	CF057_HUMAN	hypothetical protein LOC135154 precursor	63						extracellular region					0						TGCACCAGAGGATTCCCATTT	0.383													37	30					0	0	0.002222	0	0
KIAA1009	22832	broad.mit.edu	37	6	84896291	84896291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:84896291G>A	uc010kbp.2	-	12	1257	c.1160C>T	c.(1159-1161)CCC>CTC	p.P387L	KIAA1009_uc003pkj.3_Missense_Mutation_p.P311L|KIAA1009_uc003pkk.2_Missense_Mutation_p.P387L|KIAA1009_uc003pki.3_5'UTR	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	387					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		CATCTTCAGGGGTAAAGAGCT	0.338													30	8					0	0	0.006320	0	0
FAM184A	79632	broad.mit.edu	37	6	119301436	119301436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:119301436G>A	uc003pyj.2	-	10	2516	c.2168C>T	c.(2167-2169)ACG>ATG	p.T723M	FAM184A_uc003pyk.3_Missense_Mutation_p.T603M|FAM184A_uc003pyl.3_Missense_Mutation_p.T603M	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	723	Potential.							p.T723M(1)		ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						TCGTTCTTGCGTAAACTGGGC	0.438													24	3					0	0	0.002780	0	0
FNDC1	84624	broad.mit.edu	37	6	159646676	159646676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:159646676G>A	uc010kjv.2	+	8	1194	c.994G>A	c.(994-996)GAA>AAA	p.E332K	FNDC1_uc010kjw.1_Missense_Mutation_p.E280K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	332	Fibronectin type-III 3.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CACTGTGTATGAATTTGCAGT	0.468													48	5					0	0	0.003610	0	0
FAM188B	84182	broad.mit.edu	37	7	30880436	30880436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr7:30880436G>A	uc003tbt.2	+	9	1494	c.1417G>A	c.(1417-1419)GAA>AAA	p.E473K	FAM188B_uc010kwe.2_Missense_Mutation_p.E444K	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	473											0						ACTCCTGTTTGAAGGAGATAG	0.498													20	27					0	0	0.001882	0	0
ABCA13	154664	broad.mit.edu	37	7	48312755	48312755	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr7:48312755A>T	uc003toq.2	+	17	3517	c.3492A>T	c.(3490-3492)TTA>TTT	p.L1164F	ABCA13_uc010kyr.2_Missense_Mutation_p.L667F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1164					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TATCTCAATTATTTAAGTTTG	0.378													11	37					0	0	0.000978	0	0
FGL2	10875	broad.mit.edu	37	7	76826009	76826009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr7:76826009C>T	uc003ugb.2	-	2	947	c.907G>A	c.(907-909)GAT>AAT	p.D303N	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	303	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						TCTTCAAGATCTATTCTCAGA	0.368													30	34					0	0	0.001786	0	0
SEMA3A	10371	broad.mit.edu	37	7	83675699	83675699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr7:83675699C>T	uc003uhz.2	-	6	923	c.608G>A	c.(607-609)CGA>CAA	p.R203Q		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	203	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						CCCAAGAGTTCGGAAGATAGC	0.428													44	39					0	0	0.002522	0	0
TRRAP	8295	broad.mit.edu	37	7	98547816	98547816	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr7:98547816G>A	uc003upp.2	+	37	5453	c.5244G>A	c.(5242-5244)CAG>CAA	p.Q1748Q	TRRAP_uc011kis.1_Silent_p.Q1730Q|TRRAP_uc003upr.2_Silent_p.Q1447Q	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1748					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GCATCGCTCAGAAACGTGCCC	0.438													26	4					0	0	0.003954	0	0
MUC17	140453	broad.mit.edu	37	7	100683508	100683508	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr7:100683508C>T	uc003uxp.1	+	3	8864	c.8811C>T	c.(8809-8811)ACC>ACT	p.T2937T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2937	Extracellular (Potential).|47.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TTGTCAGCACCGTGCCAGTGG	0.488													90	15					0	0	0.003610	0	0
IQUB	154865	broad.mit.edu	37	7	123152121	123152121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr7:123152121G>A	uc003vkn.2	-	2	851	c.274C>T	c.(274-276)CCG>TCG	p.P92S	IQUB_uc003vko.2_Missense_Mutation_p.P92S|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.P92S|IQUB_uc003vkq.2_Missense_Mutation_p.P92S	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	92										ovary(3)|large_intestine(1)	4						TGATGTTGCGGAGTATATGAA	0.388													42	51					0	0	0.003214	0	0
BLK	640	broad.mit.edu	37	8	11400814	11400814	+	Silent	SNP	G	A	A	rs149279535	byFrequency	TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr8:11400814G>A	uc003wty.2	+	2	662	c.81G>A	c.(79-81)AAG>AAA	p.K27K	BLK_uc003wtz.2_Intron	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	27					intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		GCCCCCTGAAGGTCAGCGCCC	0.493													9	11					0	0	0.008291	0	0
ADAM28	10863	broad.mit.edu	37	8	24171079	24171079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr8:24171079G>A	uc003xdy.2	+	6	645	c.562G>A	c.(562-564)GCC>ACC	p.A188T	ADAM28_uc003xdx.2_Missense_Mutation_p.A188T|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	188					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TGCCCTACCTGCCACCAAACT	0.413													37	34					0	0	0.002222	0	0
RP1	6101	broad.mit.edu	37	8	55541651	55541651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr8:55541651G>A	uc003xsd.1	+	4	5357	c.5209G>A	c.(5209-5211)GAA>AAA	p.E1737K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1737					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGACATAGAGGAAGGAGTACT	0.418													8	12					0	0	0.003080	0	0
PAG1	55824	broad.mit.edu	37	8	81897151	81897151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr8:81897151G>A	uc003ybz.2	-	7	1447	c.736C>T	c.(736-738)CTT>TTT	p.L246F		NM_018440	NP_060910	Q9NWQ8	PAG1_HUMAN	phosphoprotein associated with glycosphingolipid	246	Cytoplasmic (Potential).				epidermal growth factor receptor signaling pathway|intracellular signal transduction|T cell receptor signaling pathway	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding|SH3/SH2 adaptor activity				0	Lung NSC(7;5.76e-06)|all_lung(9;2e-05)		BRCA - Breast invasive adenocarcinoma(6;0.0567)|Epithelial(68;0.0634)|all cancers(69;0.197)			GAATTTCCAAGGATACTCTCT	0.498													37	51					0	0	0.006230	0	0
ST3GAL1	6482	broad.mit.edu	37	8	134488128	134488128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr8:134488128G>A	uc003yuk.2	-	5	969	c.140C>T	c.(139-141)TCC>TTC	p.S47F	ST3GAL1_uc003yum.2_Missense_Mutation_p.S47F	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	47	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			CAGGTTCTCGGAGAGCTCCAG	0.577													16	26					0	0	0.003163	0	0
WASH5P	375690	broad.mit.edu	37	9	17086	17086	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:17086G>A	uc010mgm.1	-	7	905	c.762C>T	c.(760-762)CCC>CCT	p.P254P	WASH5P_uc003zfr.2_RNA|WASH5P_uc011llq.1_RNA|WASH5P_uc003zfu.1_Silent_p.P267P	NM_182905	NP_878908			WAS protein family homolog 1												0						TGGCAATGCCGGGCAGGTCAG	0.607													5	5					0	0	0.000602	0	0
PLIN2	123	broad.mit.edu	37	9	19126422	19126422	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:19126422C>A	uc003zno.2	-	2	182	c.3G>T	c.(1-3)ATG>ATT	p.M1I	PLIN2_uc011lna.1_5'UTR|PLIN2_uc011lnb.1_Missense_Mutation_p.M1I	NM_001122	NP_001113	Q99541	PLIN2_HUMAN	adipose differentiation-related protein	1					cellular lipid metabolic process	endoplasmic reticulum|extracellular region|lipid particle				ovary(2)	2						CAACGGATGCCATTTTTCTTC	0.418													14	4					1.49906e-05	2.11378e-05	0.002450	1	0
CDKN2A	1029	broad.mit.edu	37	9	21971120	21971120	+	Nonsense_Mutation	SNP	G	A	A	rs121913388		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:21971120G>A	uc003zpk.2	-	2	450	c.238C>T	c.(238-240)CGA>TGA	p.R80*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.P135L	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	80	ANK 3.		R -> P (in CMM2; loss of CDK4 binding).|R -> L (in a head and neck tumor).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.R80*(88)|p.?(13)|p.R80Q(2)|p.P135L(2)|p.T79fs*37(1)|p.L65fs*38(1)|p.R80fs*66(1)|p.A76fs*64(1)|p.T79fs*65(1)|p.E61_L94del(1)|p.A68fs*3(1)|p.R80fs*34(1)|p.R80?(1)|p.R80L(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TGCACGGGTCGGGTGAGAGTG	0.726	R80*(MEWO_SKIN)|R80*(HSC4_UPPER_AERODIGESTIVE_TRACT)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			69	15					0	0	0.003610	0	0
ELAVL2	1993	broad.mit.edu	37	9	23692586	23692586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:23692586G>A	uc003zpu.2	-	7	1324	c.1049C>T	c.(1048-1050)TCC>TTC	p.S350F	ELAVL2_uc003zps.2_Missense_Mutation_p.S337F|ELAVL2_uc003zpt.2_Missense_Mutation_p.S337F|ELAVL2_uc003zpv.2_Missense_Mutation_p.S350F|ELAVL2_uc003zpw.2_Missense_Mutation_p.S337F	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	350	RRM 3.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TGTCTTAAAGGAGACCTGCAG	0.403													11	0					0	0	0.001855	0	0
APTX	54840	broad.mit.edu	37	9	32987831	32987831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:32987831G>A	uc003zrm.2	-	3	391	c.194C>T	c.(193-195)CCC>CTC	p.P65L	APTX_uc010mjm.2_Intron|APTX_uc003zrj.2_5'UTR|APTX_uc011lns.1_Intron|APTX_uc003zrl.2_Intron|APTX_uc003zrn.2_5'UTR|APTX_uc003zro.2_Missense_Mutation_p.P65L|APTX_uc003zrp.2_5'UTR|APTX_uc003zrq.2_5'UTR|APTX_uc003zrr.2_Intron|APTX_uc003zrs.2_Missense_Mutation_p.P65L|APTX_uc003zrt.2_5'UTR|APTX_uc003zru.2_Intron|APTX_uc003zrv.2_Missense_Mutation_p.P79L|APTX_uc003zrw.2_Missense_Mutation_p.P65L|APTX_uc003zrx.2_Missense_Mutation_p.P65L|APTX_uc003zry.2_Missense_Mutation_p.P65L|APTX_uc003zrz.2_Intron|APTX_uc003zsa.1_Intron|APTX_uc003zsb.1_Intron|APTX_uc003zsc.1_Intron	NM_175072	NP_778242	Q7Z2E3	APTX_HUMAN	aprataxin isoform c	79	Interactions with ADPRT and NCL.|FHA-like.				cell death|double-strand break repair|regulation of protein stability|response to hydrogen peroxide|single strand break repair	chromatin|nucleolus|nucleoplasm	chromatin binding|damaged DNA binding|DNA 5'-adenosine monophosphate hydrolase activity|double-stranded DNA binding|double-stranded RNA binding|phosphoglycolate phosphatase activity|phosphoprotein binding|polynucleotide 3'-phosphatase activity|protein N-terminus binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0302)	GBM - Glioblastoma multiforme(74;0.105)		AATGCTGGTGGGATTGACTCC	0.403								Direct_reversal_of_damage|Editing_and_processing_nucleases					18	3					0	0	0.004990	0	0
GBA2	57704	broad.mit.edu	37	9	35740240	35740240	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:35740240T>C	uc003zxw.2	-	7	1773	c.1249A>G	c.(1249-1251)ATC>GTC	p.I417V	GBA2_uc003zxx.1_5'Flank|GBA2_uc011lpb.1_Missense_Mutation_p.I417V|GBA2_uc011lpc.1_Missense_Mutation_p.I417V|GBA2_uc011lpd.1_Missense_Mutation_p.I423V|GBA2_uc003zxy.1_Missense_Mutation_p.I130V	NM_020944	NP_065995	Q9HCG7	GBA2_HUMAN	bile acid beta-glucosidase	417	Extracellular (Potential).				bile acid metabolic process|glucosylceramide catabolic process|O-glycoside catabolic process	integral to membrane|microsome|plasma membrane|smooth endoplasmic reticulum	beta-glucosidase activity|glucosylceramidase activity			ovary(3)|skin(1)	4	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CCAAACATGATCCTGGGCATG	0.552													20	3					0	0	0.001523	0	0
FBXO10	26267	broad.mit.edu	37	9	37515909	37515909	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:37515909G>A	uc004aab.2	-	10	2737	c.2688C>T	c.(2686-2688)TTC>TTT	p.F896F	FBXO10_uc004aac.2_Silent_p.F912F|FBXO10_uc004aad.2_Silent_p.F446F	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	896						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		ACTTTTTCTTGAAGACCAGGA	0.498													45	10					0	0	0.003610	0	0
TRPM6	140803	broad.mit.edu	37	9	77390934	77390934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:77390934G>A	uc004ajl.1	-	24	3506	c.3268C>T	c.(3268-3270)CGC>TGC	p.R1090C	TRPM6_uc004ajk.1_Missense_Mutation_p.R1085C|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.R46C	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1090	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ATGATGTAGCGATAGCGGTTG	0.493													42	55					0	0	0.003214	0	0
PPAPDC3	84814	broad.mit.edu	37	9	134165420	134165420	+	Silent	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:134165420C>T	uc004cal.2	+	1	340	c.36C>T	c.(34-36)GAC>GAT	p.D12D		NM_032728	NP_116117	Q8NBV4	PPAC3_HUMAN	phosphatidic acid phosphatase type 2 domain	12	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	hydrolase activity			breast(1)	1	all_hematologic(7;0.0119)			OV - Ovarian serous cystadenocarcinoma(145;1.22e-05)|Epithelial(140;0.000173)		GTGCCCGGGACCGCAACAACG	0.706													7	11					0	0	0.001984	0	0
ABCA2	20	broad.mit.edu	37	9	139912064	139912064	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr9:139912064G>A	uc011mem.1	-	16	2437	c.2289C>T	c.(2287-2289)TCC>TCT	p.S763S	ABCA2_uc011mel.1_Silent_p.S764S|ABCA2_uc004ckl.1_Silent_p.S694S|ABCA2_uc004ckm.1_Silent_p.S794S|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	763	Helical; (Potential).				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GTGCTGTCACGGAGATGGACA	0.617													33	0					0	0	0.004289	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29301163	29301163	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chrX:29301163A>C	uc004dby.2	+	3	699	c.191A>C	c.(190-192)TAC>TCC	p.Y64S		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	64	Ig-like C2-type 1.|Extracellular (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						AGAACAAATTACTCCCTTGCC	0.423													14	2					0	0	0.002450	0	0
CXorf59	286464	broad.mit.edu	37	X	36162701	36162701	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chrX:36162701G>A	uc004ddk.1	+	11	1470	c.1284G>A	c.(1282-1284)AAG>AAA	p.K428K		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	428						integral to membrane				central_nervous_system(1)	1						tgtttccaaaggagatggatg	0													37	9					0	0	0.002222	0	0
NRK	203447	broad.mit.edu	37	X	105193601	105193601	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chrX:105193601T>A	uc004emd.2	+	27	4691	c.4388T>A	c.(4387-4389)ATT>AAT	p.I1463N	NRK_uc011msi.1_Missense_Mutation_p.I44N	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1463	CNH.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						AATATCATCATTTTACCTGAT	0.368										HNSCC(51;0.14)			32	6					0	0	0.005524	0	0
COL4A6	1288	broad.mit.edu	37	X	107430341	107430342	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chrX:107430341_107430342GG>AA	uc004enw.3	-	23	2041_2042	c.1938_1939CC>TT	c.(1936-1941)GGCCTT>GGTTTT	p.L647F	COL4A6_uc004env.3_Missense_Mutation_p.L646F|COL4A6_uc011msn.1_Missense_Mutation_p.L646F|COL4A6_uc010npk.2_Missense_Mutation_p.L646F	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	647	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						GATCCGGGAAGGCCTTGTTGTC	0.51									Alport_syndrome_with_Diffuse_Leiomyomatosis				147	32					0	0	0.004672	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299290	125299290	+	Silent	SNP	G	A	A			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chrX:125299290G>A	uc004euk.1	-	1	645	c.618C>T	c.(616-618)ACC>ACT	p.T206T		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	206	WD 2.									lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						TCACAGCTACGGTGTCACTCA	0.657													21	3					0	0	0.001523	0	0
GABRA3	2556	broad.mit.edu	37	X	151376545	151376545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chrX:151376545C>T	uc010ntk.1	-	7	946	c.706G>A	c.(706-708)GAT>AAT	p.D236N		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	236	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CGAGAACCATCCTGTGCCACT	0.403													43	5					0	0	0.003214	0	0
PLCH2	9651	broad.mit.edu	37	1	2430086	2430087	+	Splice_Site	INS	-	GTGGGGGCC	GTGGGGGCC	rs142848828	by1000genomes	TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr1:2430086_2430087insGTGGGGGCC	uc001aji.1	+	17	2623	c.2349_splice	c.e17+1	p.E783_splice	PLCH2_uc010nyz.1_Splice_Site_p.E571_splice|PLCH2_uc009vle.1_Splice_Site_p.E535_splice|PLCH2_uc001ajj.1_Splice_Site_p.E571_splice|PLCH2_uc001ajk.1_Splice_Site_p.E571_splice|PLCH2_uc001ajl.1_5'Flank	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2						intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		ACCGTGGGGAGGTGGGGGCCAG	0.703													4	7	---	---	---	---					
ANKRD11	29123	broad.mit.edu	37	16	89347908	89347908	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr16:89347908delG	uc002fmx.1	-	9	5503	c.5042delC	c.(5041-5043)GCAfs	p.A1681fs	ANKRD11_uc002fmy.1_Frame_Shift_Del_p.A1681fs|ANKRD11_uc002fnc.1_Frame_Shift_Del_p.A1681fs|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Frame_Shift_Del_p.A1638fs	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1681						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GTGAGGGCCTGCCAGCCAGTC	0.592													66	18	---	---	---	---					
KIAA1267	284058	broad.mit.edu	37	17	44115908	44115929	+	Frame_Shift_Del	DEL	GTGCTGGCTGTAACCTGTGAGC	-	-			TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr17:44115908_44115929delGTGCTGGCTGTAACCTGTGAGC	uc002ikb.2	-	9	2601_2622	c.2516_2537delGCTCACAGGTTACAGCCAGCAC	c.(2515-2538)AGCTCACAGGTTACAGCCAGCACAfs	p.S839fs	KIAA1267_uc002ikc.2_Frame_Shift_Del_p.S839fs|KIAA1267_uc002ikd.2_Frame_Shift_Del_p.S839fs|KIAA1267_uc010dav.2_Frame_Shift_Del_p.S839fs|KIAA1267_uc010wkb.1_Frame_Shift_Del_p.S170fs|KIAA1267_uc010wkc.1_Frame_Shift_Del_p.S107fs	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	839_846						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				ACTTACCGATGTGCTGGCTGTAACCTGTGAGCTAGAGCTGGC	0.595													13	13	---	---	---	---					
C6orf153	88745	broad.mit.edu	37	6	42989414	42989419	+	In_Frame_Del	DEL	GCCGGG	-	-	rs3833662		TCGA-EE-A185-06A-11D-A196-08	TCGA-EE-A185-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d056645f-4dd3-49f3-b0a4-2293e2b4d82c	86e96814-fe03-47a8-8eb6-cdead9fe4f05	g.chr6:42989414_42989419delGCCGGG	uc003otp.1	+	1	30_35	c.22_27delGCCGGG	c.(22-27)GCCGGGdel	p.AG14del		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	14_15					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TAACTAccgcgccggggccggggccg	0.529													4	4	---	---	---	---					
