Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	865644	865644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:865644G>A	uc001abw.1	+	3	262	c.182G>A	c.(181-183)AGT>AAT	p.S61N	SAMD11_uc001abv.1_Missense_Mutation_p.S61N	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	61						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		AGCGACGGGAGTGGCCCCACC	0.642													6	6					0	0	0.001984	0	0
SAMD11	148398	broad.mit.edu	37	1	874805	874805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:874805C>T	uc001abw.1	+	7	751	c.671C>T	c.(670-672)CCC>CTC	p.P224L	SAMD11_uc001abx.1_Intron	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	224						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		GAGGACCCACCCTGGCATGAT	0.647													16	22					0	0	0.000743	0	0
NOC2L	26155	broad.mit.edu	37	1	888657	888657	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:888657G>A	uc001abz.3	-	9	959	c.900C>T	c.(898-900)GTC>GTT	p.V300V	NOC2L_uc001aby.3_Silent_p.I97I|NOC2L_uc009vjq.2_Silent_p.I300I	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	300						nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		TGCTCCATACGATCACCATTC	0.627													9	16					0	0	0.000978	0	0
AGRN	375790	broad.mit.edu	37	1	981387	981387	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:981387C>T	uc001ack.1	+	16	2774	c.2724C>T	c.(2722-2724)TTC>TTT	p.F908F		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	908					axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GCTGTGAGTTCGGTGCGCGGT	0.657													24	18					0	0	0.003330	0	0
AGRN	375790	broad.mit.edu	37	1	984991	984992	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:984991_984992CC>TT	uc001ack.1	+	26	4610_4611	c.4560_4561CC>TT	c.(4558-4563)ATCCGT>ATTTGT	p.R1521C		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	1521	Laminin G-like 1.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GGGGGTGCATCCGTTTGCTGGA	0.713													4	3					0	0	0.004672	0	0
TTLL10	254173	broad.mit.edu	37	1	1120453	1120453	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:1120453G>A	uc001acy.2	+	13	1516	c.1365G>A	c.(1363-1365)CGG>CGA	p.R455R	TTLL10_uc010nyg.1_Silent_p.R455R|TTLL10_uc001acz.1_Silent_p.R382R	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	455	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GGAAGGCCCGGGGCCTCGCCA	0.617													9	16					0	0	0.000443	0	0
TNFRSF4	7293	broad.mit.edu	37	1	1149454	1149454	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:1149454G>A	uc001ade.2	-	1	59	c.54C>T	c.(52-54)CTC>CTT	p.L18L	TNFRSF4_uc001adf.2_5'UTR	NM_003327	NP_003318	P43489	TNR4_HUMAN	tumor necrosis factor receptor superfamily,	18					immune response|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of immunoglobulin secretion|T cell proliferation	integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CCAGGCCCAGGAGGAGCAGAG	0.701													9	5					0	0	0.000978	0	0
TAS1R3	83756	broad.mit.edu	37	1	1269724	1269724	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:1269724G>A	uc010nyk.1	+	6	2439	c.2439G>A	c.(2437-2439)AGG>AGA	p.R813R		NM_152228	NP_689414	Q7RTX0	TS1R3_HUMAN	taste receptor, type 1, member 3 precursor	813	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste|sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.88e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.146)	Aspartame(DB00168)	ACCTGCCCAGGTGTTACCTGC	0.662													13	9					0	0	0.002450	0	0
DVL1	1855	broad.mit.edu	37	1	1275457	1275457	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:1275457G>A	uc001aer.3	-	8	917	c.870C>T	c.(868-870)GCC>GCT	p.A290A	DVL1_uc002quu.2_Silent_p.A7A|DVL1_uc009vka.2_5'UTR|DVL1_uc001aeu.1_5'UTR	NM_004421	NP_004412	O14640	DVL1_HUMAN	dishevelled 1	290	PDZ.				canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GGCCGTCAGCGGCCACAGCCC	0.637													14	24					0	0	0.003163	0	0
CCNL2	81669	broad.mit.edu	37	1	1333983	1333983	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:1333983G>A	uc001afi.2	-	2	389	c.357C>T	c.(355-357)TCC>TCT	p.S119S	CCNL2_uc001afg.1_5'Flank|CCNL2_uc001afh.2_Silent_p.S119S|CCNL2_uc001afj.2_Silent_p.S119S|CCNL2_uc001afk.2_Silent_p.S119S|LOC148413_uc001afm.2_5'Flank|LOC148413_uc001afn.1_5'Flank|LOC148413_uc009vkc.1_5'Flank|LOC148413_uc009vkd.2_5'Flank	NM_030937	NP_112199	Q96S94	CCNL2_HUMAN	cyclin L2 isoform A	119	Cyclin-like 1.				regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.03e-36)|OV - Ovarian serous cystadenocarcinoma(86;4.17e-22)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.0023)|BRCA - Breast invasive adenocarcinoma(365;0.00465)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.146)		TTACCTCCATGGAGTGCTTCA	0.478													52	78					0	0	0.003610	0	0
KIAA1751	85452	broad.mit.edu	37	1	1897835	1897835	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:1897835C>T	uc001aim.1	-	12	1532	c.1376G>A	c.(1375-1377)TGG>TAG	p.W459*	KIAA1751_uc009vkz.1_Nonsense_Mutation_p.W459*	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	459										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		GTCTTCATTCCAAAGCCCAGA	0.607													15	22					0	0	0.004990	0	0
PLCH2	9651	broad.mit.edu	37	1	2428416	2428417	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:2428416_2428417CC>TT	uc001aji.1	+	15	2357_2358	c.2083_2084CC>TT	c.(2083-2085)CCG>TTG	p.P695L	PLCH2_uc010nyz.1_Missense_Mutation_p.P483L|PLCH2_uc009vle.1_Missense_Mutation_p.P483L|PLCH2_uc001ajj.1_Missense_Mutation_p.P483L|PLCH2_uc001ajk.1_Missense_Mutation_p.P483L|PLCH2_uc001ajl.1_5'Flank	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	695	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		CAACTACAACCCGCAGCCCTTC	0.644													7	10					0	0	0.004672	0	0
PANK4	55229	broad.mit.edu	37	1	2450650	2450650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:2450650C>T	uc001ajm.1	-	7	976	c.967G>A	c.(967-969)GGC>AGC	p.G323S	PANK4_uc010nza.1_Missense_Mutation_p.G284S	NM_018216	NP_060686	Q9NVE7	PANK4_HUMAN	pantothenate kinase 4	323					coenzyme A biosynthetic process	cytoplasm	ATP binding|pantothenate kinase activity			upper_aerodigestive_tract(1)|large_intestine(1)|ovary(1)	3	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.54e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-23)|GBM - Glioblastoma multiforme(42;2.81e-08)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.00445)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		ATAAAGAAGCCTCCAAAGTAC	0.597													26	26					0	0	0.004656	0	0
PRDM16	63976	broad.mit.edu	37	1	3328229	3328229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:3328229C>T	uc001akf.2	+	9	1548	c.1468C>T	c.(1468-1470)CCC>TCC	p.P490S	PRDM16_uc001akc.2_Missense_Mutation_p.P490S|PRDM16_uc001akd.2_Missense_Mutation_p.P490S|PRDM16_uc001ake.2_Missense_Mutation_p.P490S|PRDM16_uc009vlh.2_Missense_Mutation_p.P191S	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	490	Pro-rich.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CGAGTACTTTCCCTCCAGGCC	0.667			T	EVI1	MDS|AML								34	42					0	0	0.001706	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3395104	3395104	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:3395104A>C	uc001akg.3	+	12	1990	c.1742A>C	c.(1741-1743)CAC>CCC	p.H581P	ARHGEF16_uc001aki.2_Missense_Mutation_p.H293P|ARHGEF16_uc001akj.2_Missense_Mutation_p.H293P|ARHGEF16_uc010nzh.1_Missense_Mutation_p.H285P	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	581	PH.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		TCCGTGCCCCACCCCTTCCAG	0.667													16	23					0	0	0.001523	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3395108	3395108	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:3395108C>T	uc001akg.3	+	12	1994	c.1746C>T	c.(1744-1746)CCC>CCT	p.P582P	ARHGEF16_uc001aki.2_Silent_p.P294P|ARHGEF16_uc001akj.2_Silent_p.P294P|ARHGEF16_uc010nzh.1_Silent_p.P286P	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	582	PH.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		TGCCCCACCCCTTCCAGGTGA	0.667													15	25					0	0	0.000743	0	0
TP73	7161	broad.mit.edu	37	1	3638758	3638758	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:3638758G>A	uc001akp.2	+	5	713	c.603G>A	c.(601-603)AGG>AGA	p.R201R	TP73_uc001akq.2_Silent_p.R201R|TP73_uc010nzj.1_Silent_p.R152R|TP73_uc001akr.2_Silent_p.R152R|TP73_uc009vlk.1_Silent_p.R152R|TP73_uc001aks.2_Silent_p.R152R|TP73_uc010nzk.1_Silent_p.R130R	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	201	DNA-binding (Potential).				cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		AGCTCGGGAGGGACTTCAACG	0.662													5	20					0	0	0.001168	0	0
CCDC27	148870	broad.mit.edu	37	1	3670774	3670774	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:3670774C>T	uc001akv.2	+	2	492	c.411C>T	c.(409-411)TTC>TTT	p.F137F		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	137										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		GCCCCCAGTTCAGCACCAGGG	0.622													35	66					0	0	0.001287	0	0
CHD5	26038	broad.mit.edu	37	1	6184111	6184111	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:6184111C>T	uc001amb.1	-	31	4696	c.4596G>A	c.(4594-4596)GAG>GAA	p.E1532E	CHD5_uc001alz.1_Silent_p.E389E|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1532					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		CCTCGGGCCCCTCAGGGATCA	0.527													17	13					0	0	0.000743	0	0
CHD5	26038	broad.mit.edu	37	1	6228297	6228297	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:6228297G>A	uc001amb.1	-	2	220	c.120C>T	c.(118-120)TTC>TTT	p.F40F		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	40					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GCTCCACAGGGAAAAAGTCAT	0.502													58	94					0	0	0.003610	0	0
CAMTA1	23261	broad.mit.edu	37	1	7723465	7723465	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:7723465C>T	uc001aoi.2	+	9	1065	c.858C>T	c.(856-858)ATC>ATT	p.I286I		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	286					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		ACCGCATCATCTCGCCCAAGG	0.527													45	72					0	0	0.003610	0	0
CAMTA1	23261	broad.mit.edu	37	1	7723467	7723467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:7723467C>T	uc001aoi.2	+	9	1067	c.860C>T	c.(859-861)TCG>TTG	p.S287L		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	287					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding	p.S287L(1)		ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CGCATCATCTCGCCCAAGGTG	0.537													48	67					0	0	0.003610	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724911	7724911	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:7724911C>T	uc001aoi.2	+	9	2511	c.2304C>T	c.(2302-2304)TCC>TCT	p.S768S		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	768					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		TTGACATCTCCTTCAGCAACC	0.632													68	123					0	0	0.003610	0	0
RERE	473	broad.mit.edu	37	1	8418851	8418852	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:8418851_8418852GG>AA	uc001ape.2	-	21	4553_4554	c.3743_3744CC>TT	c.(3742-3744)CCC>CTT	p.P1248L	RERE_uc001apf.2_Missense_Mutation_p.P1248L|RERE_uc001apd.2_Missense_Mutation_p.P694L	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1248					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		CAGGTGTGTCGGGCCCGATGTA	0.653													34	35					0	0	0.004672	0	0
SLC2A5	6518	broad.mit.edu	37	1	9101929	9101929	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:9101929G>A	uc001apo.2	-	5	778	c.486C>T	c.(484-486)CTC>CTT	p.L162L	SLC2A5_uc010nzy.1_Silent_p.L103L|SLC2A5_uc010nzz.1_Silent_p.L47L|SLC2A5_uc010oaa.1_Silent_p.L118L|SLC2A5_uc010oab.1_Silent_p.L162L|SLC2A5_uc010oac.1_3'UTR|SLC2A5_uc001app.3_Silent_p.L162L	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	162	Helical; Name=5; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GCACCACCCCGAGAGCCCCCC	0.537													12	29					0	0	0.000978	0	0
SLC2A5	6518	broad.mit.edu	37	1	9107682	9107682	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:9107682C>T	uc001apo.2	-	4	697	c.405G>A	c.(403-405)GTG>GTA	p.V135V	SLC2A5_uc010nzy.1_Silent_p.V76V|SLC2A5_uc010nzz.1_Silent_p.V20V|SLC2A5_uc010oaa.1_Silent_p.V91V|SLC2A5_uc010oab.1_Silent_p.V135V|SLC2A5_uc010oac.1_Intron|SLC2A5_uc001app.3_Silent_p.V135V	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	135	Helical; Name=4; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CACATATTCCCACCAAAAGTC	0.448													48	109					0	0	0.003610	0	0
H6PD	9563	broad.mit.edu	37	1	9305602	9305602	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:9305602C>T	uc001apt.2	+	2	882	c.609C>T	c.(607-609)GAC>GAT	p.D203D		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	203	Glucose 1-dehydrogenase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	ACCGGGTGGACCATTACTTAG	0.577													11	26					0	0	0.000978	0	0
H6PD	9563	broad.mit.edu	37	1	9324222	9324222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:9324222C>T	uc001apt.2	+	5	1943	c.1670C>T	c.(1669-1671)TCC>TTC	p.S557F		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	557	6-phosphogluconolactonase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	CCGCTGGTCTCCGCCTGGTCC	0.667													13	14					0	0	0.001855	0	0
LZIC	84328	broad.mit.edu	37	1	9994837	9994837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:9994837G>A	uc001aqm.2	-	4	472	c.319C>T	c.(319-321)CGG>TGG	p.R107W	LZIC_uc001aqn.2_Intron|LZIC_uc001aqo.2_Missense_Mutation_p.R107W|LZIC_uc009vmr.2_Missense_Mutation_p.R107W|LZIC_uc010oah.1_Missense_Mutation_p.R128W	NM_032368	NP_115744	Q8WZA0	LZIC_HUMAN	leucine zipper and CTNNBIP1 domain containing	107							beta-catenin binding				0		all_lung(284;0.000407)|Renal(390;0.000469)|Lung NSC(185;0.000577)|Colorectal(325;0.0062)|Breast(348;0.00686)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.29e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;0.000242)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|STAD - Stomach adenocarcinoma(132;0.00842)|READ - Rectum adenocarcinoma(331;0.0419)		AACCTTGTCCGAAGCTGACCT	0.398													112	171					0	0	0.003610	0	0
KIF1B	23095	broad.mit.edu	37	1	10383993	10383993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:10383993C>T	uc001aqx.3	+	25	2612	c.2410C>T	c.(2410-2412)CCT>TCT	p.P804S	KIF1B_uc001aqw.3_Missense_Mutation_p.P758S|KIF1B_uc001aqy.2_Missense_Mutation_p.P778S|KIF1B_uc001aqz.2_Missense_Mutation_p.P804S|KIF1B_uc001ara.2_Missense_Mutation_p.P764S|KIF1B_uc001arb.2_Missense_Mutation_p.P790S	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	804					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CCCTTTGCCTCCTGAATTACT	0.448													56	53					0	0	0.003610	0	0
PGD	5226	broad.mit.edu	37	1	10479551	10479551	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:10479551C>T	uc001arc.2	+	12	1377	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	PGD_uc001ard.2_Silent_p.F349F|PGD_uc010oak.1_Silent_p.F407F|PGD_uc010oal.1_Silent_p.F416F	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	429					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		CCCTCTCCTTCTATGACGGGT	0.622													40	56					0	0	0.001706	0	0
CASZ1	54897	broad.mit.edu	37	1	10709446	10709446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:10709446C>T	uc001aro.2	-	14	3249	c.2929G>A	c.(2929-2931)GAA>AAA	p.E977K	CASZ1_uc001arp.1_Missense_Mutation_p.E977K	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	977					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CCCTCCGCTTCCGCCTTGATG	0.637													5	12					0	0	0.000602	0	0
CASZ1	54897	broad.mit.edu	37	1	10710808	10710808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:10710808C>T	uc001aro.2	-	13	3141	c.2821G>A	c.(2821-2823)GAA>AAA	p.E941K	CASZ1_uc001arp.1_Missense_Mutation_p.E941K	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	941					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CCATTTGATTCGTTGCTAGAA	0.597													36	47					0	0	0.001287	0	0
C1orf127	148345	broad.mit.edu	37	1	11008286	11008286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:11008286C>T	uc010oao.1	-	8	1464	c.1459G>A	c.(1459-1461)GGG>AGG	p.G487R	C1orf127_uc001arr.1_Missense_Mutation_p.G469R|C1orf127_uc001ars.1_Missense_Mutation_p.G461R	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	487										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		CCCCTGGCCCCCTCCCTGGGG	0.642													32	37					0	0	0.002836	0	0
C1orf127	148345	broad.mit.edu	37	1	11008779	11008779	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:11008779C>T	uc010oao.1	-	8	971	c.966G>A	c.(964-966)GGG>GGA	p.G322G	C1orf127_uc001arr.1_Silent_p.G304G|C1orf127_uc001ars.1_Silent_p.G296G	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	322										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		GTCCAGGGATCCCTGCTTCCC	0.652													22	53					0	0	0.002780	0	0
PTCHD2	57540	broad.mit.edu	37	1	11586830	11586830	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:11586830C>T	uc001ash.3	+	13	2874	c.2736C>T	c.(2734-2736)GCC>GCT	p.A912A	PTCHD2_uc001asi.1_Silent_p.A912A	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	912	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CCTGTGATGCCAAGCGGGGCT	0.607													18	34					0	0	0.001216	0	0
C1orf187	374946	broad.mit.edu	37	1	11766526	11766526	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:11766526C>T	uc001asr.1	+	2	351	c.211C>T	c.(211-213)CTG>TTG	p.L71L		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	71					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		GGGCCCAGGCCTGCCCAGCCA	0.716													7	8					0	0	0.004482	0	0
PRAMEF20	645425	broad.mit.edu	37	1	13743086	13743086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:13743086G>A	uc009voa.1	+	2	374	c.275G>A	c.(274-276)AGG>AAG	p.R92K		NM_001099852	NP_001093322	Q5VT98	PRA20_HUMAN	PRAME family member 20	92										ovary(1)	1	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.5e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000156)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTTACCCACAGGGTTCGTCTC	0.597													12	12					0	0	0.001523	0	0
CTRC	11330	broad.mit.edu	37	1	15767060	15767060	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:15767060C>T	uc001awi.1	+	3	227	c.204C>T	c.(202-204)TTC>TTT	p.F68F	CTRC_uc001awj.1_Silent_p.F68F	NM_007272	NP_009203	Q99895	CTRC_HUMAN	chymotrypsin C preproprotein	68	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0		Breast(348;0.000207)|all_lung(284;0.00021)|Colorectal(325;0.000257)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)|Hepatocellular(190;0.0634)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTAGCAACTTCGTCCTCACTG	0.592													10	12					0	0	0.001368	0	0
EPHA2	1969	broad.mit.edu	37	1	16458581	16458581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:16458581G>A	uc001aya.1	-	13	2440	c.2303C>T	c.(2302-2304)CCC>CTC	p.P768L		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	768	Mediates interaction with ARHGEF16 and ELMO2.|Protein kinase.|Cytoplasmic (Potential).				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GGTGGCCTCGGGGTCGTCCTC	0.622													28	33					0	0	0.001786	0	0
EPHA2	1969	broad.mit.edu	37	1	16458927	16458927	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:16458927G>A	uc001aya.1	-	12	2198	c.2061C>T	c.(2059-2061)CCC>CCT	p.P687P		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	687	Mediates interaction with ARHGEF16 and ELMO2.|Protein kinase.|Cytoplasmic (Potential).				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	TGATCATCATGGGCTTGTCTG	0.448													22	31					0	0	0.002780	0	0
ARHGEF19	128272	broad.mit.edu	37	1	16528313	16528313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:16528313G>A	uc001ayc.1	-	14	2247	c.2110C>T	c.(2110-2112)CCC>TCC	p.P704S	ARHGEF19_uc009voo.1_Missense_Mutation_p.P57S|ARHGEF19_uc001ayb.1_Missense_Mutation_p.P181S	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	704	PH.				regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTCCTGGGGGCTGGAGGGG	0.602													12	15					0	0	0.002450	0	0
NBPF1	55672	broad.mit.edu	37	1	16892227	16892227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:16892227G>A	uc009vos.1	-	28	4078	c.3190C>T	c.(3190-3192)CCT>TCT	p.P1064S	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1064	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CAACTGGAAGGAGTTGAATAA	0.473													26	880					0	0	0.001786	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946493	16946493	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:16946493G>A	uc010ocf.1	-	3		c.405C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GGGCCCGCTCGGCCTCCAGCT	0.677													4	10					0	0	0.000248	0	0
PADI2	11240	broad.mit.edu	37	1	17422436	17422436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:17422436C>T	uc001baf.2	-	4	461	c.379G>A	c.(379-381)GAT>AAT	p.D127N	PADI2_uc010ocm.1_Missense_Mutation_p.D127N|PADI2_uc001bag.1_Missense_Mutation_p.D127N	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	127					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	ACCACACCATCCCGGTCTGCG	0.617													49	53					0	0	0.003610	0	0
PADI4	23569	broad.mit.edu	37	1	17681068	17681068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:17681068G>A	uc001baj.2	+	11	1224	c.1196G>A	c.(1195-1197)GGG>GAG	p.G399E		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	399					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CCCCAAACAGGGGGTATCAGT	0.572													17	41					0	0	0.001216	0	0
ACTL8	81569	broad.mit.edu	37	1	18152297	18152297	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:18152297C>T	uc001bat.2	+	3	600	c.384C>T	c.(382-384)CTC>CTT	p.L128L		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	128						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CATCGGTCCTCCTGGCCGACC	0.582											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	22					0	0	0.004990	0	0
IGSF21	84966	broad.mit.edu	37	1	18704809	18704809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:18704809G>A	uc001bau.1	+	10	1776	c.1393G>A	c.(1393-1395)GAG>AAG	p.E465K	IGSF21_uc001bav.1_Missense_Mutation_p.E286K	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	465						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		AGTGATTCTGGAGCTGACGTG	0.562													11	13					0	0	0.000978	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808982	18808982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:18808982G>A	uc001bax.2	+	1	1559	c.1507G>A	c.(1507-1509)GAA>AAA	p.E503K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.E285K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	503	Kelch 2.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GTGCCCCAAGGAAGACTCCGG	0.697													31	33					0	0	0.002096	0	0
TAS1R2	80834	broad.mit.edu	37	1	19183908	19183908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:19183908G>A	uc001bba.1	-	2	401	c.400C>T	c.(400-402)CGT>TGT	p.R134C		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	134	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	GCCACCACACGGGAAATGTAG	0.552													25	37					0	0	0.002780	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19199372	19199372	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:19199372G>A	uc001bbb.2	-	15	1935	c.1659C>T	c.(1657-1659)CCC>CCT	p.P553P	ALDH4A1_uc010ocu.1_Silent_p.P493P|ALDH4A1_uc001bbc.2_Silent_p.P553P	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	553					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	AGTCCCCCAGGGGCTTATGTG	0.622													42	37					0	0	0.003610	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19209669	19209669	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:19209669G>A	uc001bbb.2	-	7	903	c.627C>T	c.(625-627)CCC>CCT	p.P209P	ALDH4A1_uc010ocu.1_Silent_p.P149P|ALDH4A1_uc001bbc.2_Silent_p.P209P	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	209					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	TGAAGTTAAAGGGCGAGATGG	0.672													33	29					0	0	0.005524	0	0
TMCO4	255104	broad.mit.edu	37	1	20107098	20107099	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:20107098_20107099GG>AA	uc001bcn.2	-	4	395_396	c.153_154CC>TT	c.(151-156)TCCCAG>TCTTAG	p.Q52*	TMCO4_uc001bcm.2_Nonsense_Mutation_p.Q52*|TMCO4_uc001bco.1_Nonsense_Mutation_p.Q52*|TMCO4_uc001bcp.1_Nonsense_Mutation_p.Q52*|TMCO4_uc009vpn.1_Nonsense_Mutation_p.Q52*|TMCO4_uc001bcq.1_Nonsense_Mutation_p.Q52*	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	52						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		GGAAATAACTGGGACAGGGAGA	0.599													17	16					0	0	0.004672	0	0
PINK1	65018	broad.mit.edu	37	1	20972134	20972134	+	Silent	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:20972134G>T	uc001bdm.2	+	5	1135	c.1041G>T	c.(1039-1041)CTG>CTT	p.L347L	PINK1_uc001bdn.2_Silent_p.L40L	NM_032409	NP_115785	Q9BXM7	PINK1_HUMAN	PTEN induced putative kinase 1 precursor	347	Protein kinase.|Cytoplasmic (Potential).		L -> P (in PARK6; strongly reduces interaction with PARK2).		cell death|intracellular protein kinase cascade|mitochondrion degradation|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of release of cytochrome c from mitochondria|regulation of protein complex assembly|regulation of protein ubiquitination|response to stress	cytosol|integral to membrane|mitochondrial outer membrane	ATP binding|C3HC4-type RING finger domain binding|calcium-dependent protein kinase activity|magnesium ion binding|protein serine/threonine kinase activity|ubiquitin protein ligase binding			ovary(2)|central_nervous_system(1)	3		all_lung(284;2.72e-05)|Lung NSC(340;2.94e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.21e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000146)|Kidney(64;0.000182)|GBM - Glioblastoma multiforme(114;0.000497)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TGCAGCTGCTGGAAGGCGTGG	0.617													21	15					1.40151e-16	2.4321e-16	0.001523	1	0
SH2D5	400745	broad.mit.edu	37	1	21051026	21051026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:21051026C>T	uc001bdt.1	-	5	866	c.241G>A	c.(241-243)GGG>AGG	p.G81R	SH2D5_uc009vpy.1_Missense_Mutation_p.G165R|SH2D5_uc001bdu.1_RNA	NM_001103160	NP_001096630	Q6ZV89	SH2D5_HUMAN	SH2 domain containing 5 isoform 2	81											0		Colorectal(325;3.46e-05)|all_lung(284;5.32e-05)|Lung NSC(340;5.51e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000142)|GBM - Glioblastoma multiforme(114;0.000465)|Kidney(64;0.000476)|STAD - Stomach adenocarcinoma(196;0.00303)|KIRC - Kidney renal clear cell carcinoma(64;0.00634)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GGCACCTCCCCTGTGGGCCCT	0.662													5	12					0	0	0.000602	0	0
EIF4G3	8672	broad.mit.edu	37	1	21329214	21329214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:21329214G>A	uc001bec.2	-	3	278	c.22C>T	c.(22-24)CGT>TGT	p.R8C	EIF4G3_uc010odj.1_Missense_Mutation_p.R8C|EIF4G3_uc009vpz.2_Missense_Mutation_p.R8C|EIF4G3_uc001bed.2_Missense_Mutation_p.R8C|EIF4G3_uc001bef.2_Missense_Mutation_p.R8C|EIF4G3_uc001bee.2_Missense_Mutation_p.R8C|EIF4G3_uc001beg.2_Missense_Mutation_p.R8C|EIF4G3_uc010odk.1_Missense_Mutation_p.R8C|EIF4G3_uc001beh.2_Missense_Mutation_p.R8C	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	8					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		ACCGGAGAACGGGTTTGAGGT	0.443													112	128					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	1	21752741	21752741	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:21752741G>A	uc001bep.1	-	3		c.235C>T								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		CACGTCAAGAGAAAAGCCAAC	0.453													17	98					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	1	21753543	21753543	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:21753543C>T	uc001bep.1	-	2		c.48G>A								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		TGGTCTTCTTCCTCTTCTTGG	0.463													5	16					0	0	0.003080	0	0
NBPF3	84224	broad.mit.edu	37	1	21807446	21807446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:21807446G>A	uc001ber.2	+	12	1755	c.1405G>A	c.(1405-1407)GAA>AAA	p.E469K	NBPF3_uc001bes.2_Missense_Mutation_p.E413K|NBPF3_uc009vqb.2_Missense_Mutation_p.E457K|NBPF3_uc010odm.1_Missense_Mutation_p.E399K	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	469	Poly-Glu.|NBPF 4.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCAAGAAGAGGAAGAAGACCA	0.468													14	99					0	0	0.001882	0	0
HSPG2	3339	broad.mit.edu	37	1	22207321	22207321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:22207321G>A	uc001bfj.2	-	15	1866	c.1826C>T	c.(1825-1827)TCC>TTC	p.S609F	HSPG2_uc009vqd.2_Missense_Mutation_p.S610F	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	609	Laminin IV type A 1.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GCCGCCATAGGAGTCCACCTG	0.632													4	9					0	0	0.000602	0	0
CELA3B	23436	broad.mit.edu	37	1	22303555	22303555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:22303555C>T	uc001bfk.2	+	1	138	c.23C>T	c.(22-24)TCC>TTC	p.S8F	CELA3B_uc009vqf.2_Missense_Mutation_p.S7F	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	8					cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						CTGCTCAGTTCCCTCCTCCTT	0.527													102	103					0	0	0.003610	0	0
EPHB2	2048	broad.mit.edu	37	1	23232533	23232533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:23232533G>A	uc009vqj.1	+	10	1964	c.1819G>A	c.(1819-1821)GAG>AAG	p.E607K	EPHB2_uc001bge.2_Missense_Mutation_p.E608K|EPHB2_uc001bgf.2_Missense_Mutation_p.E607K|EPHB2_uc010odu.1_Missense_Mutation_p.E549K	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	607	Cytoplasmic (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GGACCCCAACGAGGCAGTGCG	0.517									Hereditary_Prostate_Cancer				19	24					0	0	0.000743	0	0
ZNF436	80818	broad.mit.edu	37	1	23688494	23688494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:23688494G>A	uc001bgt.2	-	3	1762	c.1381C>T	c.(1381-1383)CTT>TTT	p.L461F	ZNF436_uc001bgu.2_Missense_Mutation_p.L461F	NM_030634	NP_085137	Q9C0F3	ZN436_HUMAN	zinc finger protein 436	461	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;5.97e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000977)|KIRC - Kidney renal clear cell carcinoma(1967;0.00336)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		TGTTTAATAAGAGCTGAGCTC	0.393													47	62					0	0	0.003610	0	0
ASAP3	55616	broad.mit.edu	37	1	23763535	23763535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:23763535G>A	uc001bha.2	-	15	1469	c.1345C>T	c.(1345-1347)CCC>TCC	p.P449S	ASAP3_uc001bgy.1_5'Flank|ASAP3_uc001bgz.1_RNA|ASAP3_uc010odz.1_Missense_Mutation_p.P318S|ASAP3_uc010oea.1_Missense_Mutation_p.P440S|ASAP3_uc001bhb.2_5'UTR	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	449	Arf-GAP.|C4-type.				regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						AGCCACGTGGGGTCTGCAGAG	0.687													8	8					0	0	0.000443	0	0
CNR2	1269	broad.mit.edu	37	1	24201874	24201874	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:24201874C>T	uc001bif.2	-	2	361	c.234G>A	c.(232-234)GGG>GGA	p.G78G		NM_001841	NP_001832	P34972	CNR2_HUMAN	cannabinoid receptor 2 (macrophage)	78	Helical; Name=2; (Potential).				behavior|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	dendrite|integral to plasma membrane|perikaryon	cannabinoid receptor activity			skin(2)|central_nervous_system(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.32e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;2.9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.146)	Nabilone(DB00486)	GGAAGTCAGCCCCAGCCAAGC	0.537													29	34					0	0	0.001786	0	0
IL22RA1	58985	broad.mit.edu	37	1	24448024	24448024	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:24448024G>A	uc001biq.1	-	7	1035	c.996C>T	c.(994-996)ATC>ATT	p.I332I	IL22RA1_uc010oeg.1_Silent_p.I264I|IL22RA1_uc009vrb.1_Silent_p.I196I|IL22RA1_uc010oeh.1_Silent_p.I332I	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	332	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		GGAGGATGGAGATGTCTGGCT	0.632													28	19					0	0	0.001786	0	0
IL28RA	163702	broad.mit.edu	37	1	24507323	24507323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:24507323G>A	uc001bis.2	-	2	93	c.80C>T	c.(79-81)CCC>CTC	p.P27L	IL28RA_uc001bir.2_Missense_Mutation_p.P27L|IL28RA_uc001bit.2_Missense_Mutation_p.P27L|IL28RA_uc001biu.2_Intron|IL28RA_uc001biv.2_Missense_Mutation_p.P27L	NM_170743	NP_734464	Q8IU57	I28RA_HUMAN	interleukin 28 receptor, alpha isoform 1	27	Extracellular (Potential).|Fibronectin type-III.				cytokine-mediated signaling pathway|negative regulation of cell proliferation|regulation of defense response to virus by host	interleukin-28 receptor complex	protein binding|receptor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00117)|all_lung(284;0.00151)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.21e-24)|Colorectal(126;6.61e-08)|COAD - Colon adenocarcinoma(152;3.56e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00918)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.185)		CACATTCTGGGGAGGGGCCAG	0.607													20	24					0	0	0.001216	0	0
C1orf130	400746	broad.mit.edu	37	1	24932124	24932124	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:24932124G>A	uc001bjk.1	+	4	261	c.195G>A	c.(193-195)GAG>GAA	p.E65E		NM_001010980	NP_001010980	Q5T1S8	CA130_HUMAN	chromosome 1 open reading frame 130	65						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.0119)|all_lung(284;0.0154)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0439)|OV - Ovarian serous cystadenocarcinoma(117;1.48e-24)|Colorectal(126;6.93e-08)|COAD - Colon adenocarcinoma(152;3.69e-06)|GBM - Glioblastoma multiforme(114;0.00036)|BRCA - Breast invasive adenocarcinoma(304;0.00189)|KIRC - Kidney renal clear cell carcinoma(1967;0.00382)|STAD - Stomach adenocarcinoma(196;0.00521)|READ - Rectum adenocarcinoma(331;0.0659)|Lung(427;0.144)		GGGAACTAGAGCCCAAGGGCC	0.592													11	32					0	0	0.000978	0	0
CNKSR1	10256	broad.mit.edu	37	1	26514758	26514758	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:26514758G>A	uc001bln.3	+	17	1567	c.1509G>A	c.(1507-1509)AAG>AAA	p.K503K	CNKSR1_uc001blm.3_Silent_p.K496K|CNKSR1_uc009vsd.2_Silent_p.K238K|CNKSR1_uc009vse.2_Silent_p.K238K|CNKSR1_uc001blo.2_Silent_p.K238K|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	503					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		GCATCTCCAAGTACCAGTCTC	0.478													16	21					0	0	0.004990	0	0
AHDC1	27245	broad.mit.edu	37	1	27874737	27874737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:27874737G>A	uc009vsy.2	-	6	4859	c.3890C>T	c.(3889-3891)CCC>CTC	p.P1297L	AHDC1_uc009vsz.1_Missense_Mutation_p.P1297L	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	1297							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		CTGTGGCTTGGGGATGAACTT	0.667													26	53					0	0	0.001061	0	0
AHDC1	27245	broad.mit.edu	37	1	27878223	27878223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:27878223G>A	uc009vsy.2	-	6	1373	c.404C>T	c.(403-405)TCC>TTC	p.S135F	AHDC1_uc009vsz.1_Missense_Mutation_p.S135F|AHDC1_uc001boh.1_Missense_Mutation_p.S8F	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	135	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		CAGGTCCTGGGAGAGGCGTGT	0.647													68	109					0	0	0.003610	0	0
YTHDF2	51441	broad.mit.edu	37	1	29069408	29069408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:29069408C>T	uc001brc.2	+	4	1123	c.626C>T	c.(625-627)TCT>TTT	p.S209F	YTHDF2_uc001brd.2_Missense_Mutation_p.S206F|YTHDF2_uc010ofx.1_Missense_Mutation_p.S159F|YTHDF2_uc001bre.2_Missense_Mutation_p.S159F	NM_016258	NP_057342	Q9Y5A9	YTHD2_HUMAN	high glucose-regulated protein 8	209					humoral immune response					ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000601)|all_lung(284;0.000771)|Breast(348;0.00502)|Renal(390;0.00758)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;5.46e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		GTTGTAGGTTCTGCTGTTGGT	0.473													30	36					0	0	0.001271	0	0
MECR	51102	broad.mit.edu	37	1	29520672	29520672	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:29520672G>A	uc001brq.1	-	10	1020	c.984C>T	c.(982-984)ATC>ATT	p.I328I	MECR_uc001brp.1_Silent_p.I252I|MECR_uc001brr.1_Silent_p.I252I|MECR_uc001brs.1_RNA	NM_016011	NP_057095	Q9BV79	MECR_HUMAN	trans-2-enoyl-CoA reductase, mitochondrial	328					fatty acid biosynthetic process	mitochondrion	trans-2-enoyl-CoA reductase (NADPH) activity|zinc ion binding			ovary(1)	1		Colorectal(325;0.000389)|Breast(348;0.00765)|Lung NSC(340;0.0081)|all_lung(284;0.00914)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.39e-07)|COAD - Colon adenocarcinoma(152;2.04e-05)|STAD - Stomach adenocarcinoma(196;0.0195)|BRCA - Breast invasive adenocarcinoma(304;0.053)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.137)		ACAGTGTGAGGATCAGCTCCT	0.612													42	74					0	0	0.001951	0	0
SDC3	9672	broad.mit.edu	37	1	31346183	31346183	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:31346183A>C	uc001bse.2	-	5	1251	c.1204T>G	c.(1204-1206)TTC>GTC	p.F402V	SDC3_uc001bsd.2_Missense_Mutation_p.F344V	NM_014654	NP_055469	O75056	SDC3_HUMAN	syndecan 3	402	Helical; (Potential).					integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)|Colorectal(325;0.0466)|all_neural(195;0.0966)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0197)|READ - Rectum adenocarcinoma(331;0.0649)		GTGACCAAGAAGGCAGCAAAG	0.577													13	38					0	0	0.002450	0	0
PUM1	9698	broad.mit.edu	37	1	31426706	31426706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:31426706G>A	uc001bsi.1	-	15	2559	c.2446C>T	c.(2446-2448)CGT>TGT	p.R816C	PUM1_uc001bsf.1_Missense_Mutation_p.R482C|PUM1_uc001bsg.1_Missense_Mutation_p.R550C|PUM1_uc001bsh.1_Missense_Mutation_p.R816C|PUM1_uc001bsj.1_Missense_Mutation_p.R790C|PUM1_uc010oga.1_Missense_Mutation_p.R672C|PUM1_uc001bsk.1_Missense_Mutation_p.R852C|PUM1_uc010ogb.1_Missense_Mutation_p.R757C	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	816					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		TATCGCAAACGAGAGGAAGAG	0.522													82	85					0	0	0.003610	0	0
HCRTR1	3061	broad.mit.edu	37	1	32089222	32089222	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:32089222G>A	uc009vtx.2	+	7	1222	c.837G>A	c.(835-837)CGG>CGA	p.R279R	HCRTR1_uc001btb.2_Silent_p.R104R|HCRTR1_uc001btc.3_Silent_p.R193R|HCRTR1_uc001btd.2_Silent_p.R279R|HCRTR1_uc010ogl.1_Silent_p.R279R	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	279	Cytoplasmic (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		CCCAGCCCCGGGCCCGCGCCT	0.662													15	15					0	0	0.004990	0	0
BAI2	576	broad.mit.edu	37	1	32193118	32193118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:32193118G>A	uc001btn.2	-	33	5015	c.4661C>T	c.(4660-4662)TCG>TTG	p.S1554L	BAI2_uc001btm.2_Missense_Mutation_p.S548L|BAI2_uc001btp.1_3'UTR|BAI2_uc010ogn.1_Missense_Mutation_p.S524L|BAI2_uc010ogo.1_Missense_Mutation_p.S1144L|BAI2_uc010ogp.1_Missense_Mutation_p.S1487L|BAI2_uc010ogq.1_Missense_Mutation_p.S1520L|BAI2_uc001bto.2_Missense_Mutation_p.S1553L	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1554	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GGGGGGCAGCGAGCCCAGTGT	0.627													9	18					0	0	0.000673	0	0
SPOCD1	90853	broad.mit.edu	37	1	32256710	32256710	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:32256710G>A	uc001bts.1	-	16	3203	c.3145C>T	c.(3145-3147)CAG>TAG	p.Q1049*	SPOCD1_uc001btr.1_3'UTR|SPOCD1_uc001btt.2_Nonsense_Mutation_p.Q341*|SPOCD1_uc001btu.2_Nonsense_Mutation_p.Q1036*|SPOCD1_uc001btv.2_Nonsense_Mutation_p.Q529*	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	1049					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		TCATCTGGCTGATAGTATCTC	0.602													7	13					0	0	0.003080	0	0
EIF3I	8668	broad.mit.edu	37	1	32694346	32694346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:32694346C>T	uc001bur.3	+	9	1191	c.658C>T	c.(658-660)CTT>TTT	p.L220F	EIF3I_uc009vuc.2_Missense_Mutation_p.L220F|EIF3I_uc001bus.2_Missense_Mutation_p.L172F	NM_003757	NP_003748	Q13347	EIF3I_HUMAN	eukaryotic translation initiation factor 3,	220	WD 4.					cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)				CTCCACAACTCTTGAACATCA	0.552													145	181					0	0	0.003610	0	0
FNDC5	252995	broad.mit.edu	37	1	33333848	33333848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:33333848C>T	uc001bwg.2	-	3	342	c.127G>A	c.(127-129)GAG>AAG	p.E43K	FNDC5_uc001bwf.1_Missense_Mutation_p.E43K	NM_153756	NP_715637	Q8NAU1	FNDC5_HUMAN	fibronectin type III domain containing 5	102	Fibronectin type-III.|Extracellular (Potential).					integral to membrane|peroxisomal membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AGCACAGGCTCGCTGGCTGGG	0.617													35	49					0	0	0.003755	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33960249	33960249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:33960249C>T	uc001bxj.3	+	8	2472	c.2305C>T	c.(2305-2307)CTT>TTT	p.L769F	ZSCAN20_uc009vui.2_Missense_Mutation_p.L768F	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	769	C2H2-type 3.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CTATAAATGCCTTGAATGTGG	0.428													35	66					0	0	0.003271	0	0
CSMD2	114784	broad.mit.edu	37	1	34102127	34102127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:34102127G>A	uc001bxn.1	-	30	4711	c.4682C>T	c.(4681-4683)CCT>CTT	p.P1561L	CSMD2_uc001bxm.1_Missense_Mutation_p.P1601L|CSMD2_uc001bxo.1_Missense_Mutation_p.P474L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1561	Extracellular (Potential).|Sushi 9.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GATGGAACCAGGATCAAAACA	0.567													10	17					0	0	0.000673	0	0
CSMD2	114784	broad.mit.edu	37	1	34191066	34191066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:34191066C>T	uc001bxn.1	-	17	2488	c.2459G>A	c.(2458-2460)GGG>GAG	p.G820E	CSMD2_uc001bxm.1_Missense_Mutation_p.G860E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	820	CUB 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTGGTAAACCCCGATCAAGGG	0.532													16	22					0	0	0.004990	0	0
CSMD2	114784	broad.mit.edu	37	1	34238206	34238206	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:34238206T>A	uc001bxn.1	-	13	1719	c.1690A>T	c.(1690-1692)AAT>TAT	p.N564Y	CSMD2_uc001bxm.1_Missense_Mutation_p.N604Y	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	564	Sushi 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CATTGGTTATTCTTTTGGCAT	0.587													44	67					0	0	0.003610	0	0
CSMD2	114784	broad.mit.edu	37	1	34276439	34276439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:34276439C>T	uc001bxn.1	-	10	1260	c.1231G>A	c.(1231-1233)GGC>AGC	p.G411S	CSMD2_uc001bxm.1_Missense_Mutation_p.G451S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	411	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCCGAGGGGCCTCGAAGGTGG	0.537													40	60					0	0	0.002852	0	0
HMGB4	127540	broad.mit.edu	37	1	34330140	34330140	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:34330140G>A	uc001bxp.2	+	2	2091	c.348G>A	c.(346-348)CCG>CCA	p.P116P	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Silent_p.P42P	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	116						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGGAGAACCCGAACTGGTCGG	0.567													56	49					0	0	0.003610	0	0
GJB3	2707	broad.mit.edu	37	1	35250684	35250684	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:35250684G>A	uc001bxx.2	+	2	936	c.321G>A	c.(319-321)CAG>CAA	p.Q107Q	GJB3_uc001bxy.2_Silent_p.Q107Q|GJB3_uc001bxz.3_Silent_p.Q107Q|uc010ohs.1_RNA	NM_024009	NP_076872	O75712	CXB3_HUMAN	connexin 31	107	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				GGCACCGCCAGAAACACGGGG	0.632													27	47					0	0	0.004656	0	0
ZMYM1	79830	broad.mit.edu	37	1	35577700	35577700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:35577700C>T	uc001bym.2	+	10	1263	c.1115C>T	c.(1114-1116)TCA>TTA	p.S372L	ZMYM1_uc001byn.2_Missense_Mutation_p.S372L|ZMYM1_uc010ohu.1_Missense_Mutation_p.S353L|ZMYM1_uc001byo.2_Missense_Mutation_p.S12L|ZMYM1_uc009vut.2_Missense_Mutation_p.S297L	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	372						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ACAGTTTCTTCAGTAACAGCA	0.234													34	60					0	0	0.003610	0	0
ZMYM4	9202	broad.mit.edu	37	1	35881164	35881164	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:35881164C>T	uc001byt.2	+	28	4238	c.4158C>T	c.(4156-4158)TTC>TTT	p.F1386F	ZMYM4_uc009vuu.2_Silent_p.F1354F|ZMYM4_uc001byu.2_Silent_p.F1062F|ZMYM4_uc009vuv.2_Silent_p.F1125F	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	1386					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCCTTTTCTTCAATACCAAAT	0.443													37	44					0	0	0.001706	0	0
CLSPN	63967	broad.mit.edu	37	1	36226355	36226355	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:36226355G>A	uc001bzi.2	-	8	1247	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I	CLSPN_uc009vux.2_Silent_p.I389I	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	389					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ATCCAGTAATGATCTGGGTTT	0.413													35	68					0	0	0.004289	0	0
GRIK3	2899	broad.mit.edu	37	1	37267565	37267565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:37267565G>A	uc001caz.2	-	16	2782	c.2647C>T	c.(2647-2649)CCC>TCC	p.P883S		NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	883	Cytoplasmic (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	ACCATCATGGGAGGCTGAGGC	0.597													24	25					0	0	0.002780	0	0
GRIK3	2899	broad.mit.edu	37	1	37315934	37315934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:37315934G>A	uc001caz.2	-	9	1439	c.1304C>T	c.(1303-1305)TCA>TTA	p.S435L	GRIK3_uc001cba.1_Missense_Mutation_p.S435L	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	435	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GACAATGAGTGATCTGTTTGT	0.607													34	46					0	0	0.004289	0	0
GRIK3	2899	broad.mit.edu	37	1	37335351	37335351	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:37335351G>A	uc001caz.2	-	5	919	c.784C>T	c.(784-786)CTG>TTG	p.L262L	GRIK3_uc001cba.1_Silent_p.L262L	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	262	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	TACATTACCAGAGTGGTGAAG	0.547													20	32					0	0	0.002299	0	0
GRIK3	2899	broad.mit.edu	37	1	37356632	37356632	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:37356632G>A	uc001caz.2	-	2	316	c.181C>T	c.(181-183)CGA>TGA	p.R61*	GRIK3_uc001cba.1_Nonsense_Mutation_p.R61*	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	61	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GCAGAAAATCGAAAGGCATGC	0.502													78	119					0	0	0.003610	0	0
SNIP1	79753	broad.mit.edu	37	1	38006000	38006000	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:38006000A>T	uc001cbi.2	-	3	757	c.684T>A	c.(682-684)CTT>CTA	p.L228L	SNIP1_uc010oid.1_RNA	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	228					production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				GTGCCCCAGAAAGTTCAAAGC	0.507													22	43					0	0	0.002780	0	0
MACF1	23499	broad.mit.edu	37	1	39818804	39818805	+	Missense_Mutation	DNP	GG	AA	AA	rs150239827	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:39818804_39818805GG>AA	uc010oiu.1	+	8	6776_6777	c.6645_6646GG>AA	c.(6643-6648)TCGGGA>TCAAGA	p.G2216R	MACF1_uc010ois.1_Missense_Mutation_p.G1714R|MACF1_uc001cda.1_Missense_Mutation_p.G1622R|MACF1_uc001cdc.1_Missense_Mutation_p.G801R|MACF1_uc001cdb.1_Missense_Mutation_p.G801R	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3781					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGCAGCTCTCGGGAGCTAGCTT	0.505													24	44					0	0	0.004672	0	0
OXCT2	64064	broad.mit.edu	37	1	40235396	40235396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:40235396G>A	uc001ceb.1	-	1	1625	c.1532C>T	c.(1531-1533)CCC>CTC	p.P511L	BMP8B_uc001cdz.1_Intron|BMP8B_uc001cea.1_Intron|OXCT2_uc009vvu.1_Missense_Mutation_p.P505L	NM_022120	NP_071403	Q9BYC2	SCOT2_HUMAN	3-oxoacid CoA transferase 2 precursor	511					ketone body catabolic process	microtubule-based flagellum|mitochondrion	3-oxoacid CoA-transferase activity			pancreas(1)	1	all_cancers(7;5.56e-14)|all_lung(5;3.88e-17)|all_epithelial(6;3.78e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;1.92e-17)|all cancers(16;4.03e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)		Succinic acid(DB00139)	CTGCTGCATGGGCCTGAGGTT	0.647													4	23					0	0	0.000602	0	0
PPT1	5538	broad.mit.edu	37	1	40557021	40557021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:40557021G>A	uc001cfb.2	-	4	645	c.413C>T	c.(412-414)TCG>TTG	p.S138L	PPT1_uc010ojf.1_Missense_Mutation_p.S88L|PPT1_uc010ojg.1_Intron|PPT1_uc009vwa.2_RNA	NM_000310	NP_000301	P50897	PPT1_HUMAN	palmitoyl-protein thioesterase 1 isoform 1	138					brain development|cofactor metabolic process|cofactor transport|DNA fragmentation involved in apoptotic nuclear change|lysosomal lumen acidification|membrane raft organization|negative regulation of cell growth|negative regulation of neuron apoptosis|neuron development|pinocytosis|positive regulation of pinocytosis|positive regulation of receptor-mediated endocytosis|protein depalmitoylation|protein transport|receptor-mediated endocytosis|regulation of synapse structure and activity|sphingolipid catabolic process|visual perception	axon|cytosol|Golgi apparatus|lysosome|membrane fraction|membrane raft|nucleus|synaptic vesicle	palmitoyl-(protein) hydrolase activity|palmitoyl-CoA hydrolase activity			ovary(1)	1	Lung NSC(20;3.43e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1e-18)|Epithelial(16;3.6e-17)|all cancers(16;1.1e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TCCCCCAACCGAGATCAGATT	0.428													18	13					0	0	0.001882	0	0
RLF	6018	broad.mit.edu	37	1	40688281	40688281	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:40688281C>T	uc001cfc.3	+	6	877	c.846C>T	c.(844-846)ATC>ATT	p.I282I		NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	282					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			TACTAGACATCATTTGTAATC	0.368													33	45					0	0	0.004289	0	0
ZMPSTE24	10269	broad.mit.edu	37	1	40758126	40758126	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:40758126T>A	uc001cfg.2	+	10	1424	c.1213T>A	c.(1213-1215)TTT>ATT	p.F405I		NM_005857	NP_005848	O75844	FACE1_HUMAN	zinc metallopeptidase STE24	405	Helical; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane	metal ion binding|metalloexopeptidase activity				0	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			GGTTCTTTCTTTTTGCCTAAC	0.398													58	100					0	0	0.003610	0	0
ZNF643	65243	broad.mit.edu	37	1	40928601	40928601	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:40928601C>T	uc001cfn.1	+	5	1242	c.945C>T	c.(943-945)GCC>GCT	p.A315A	ZNF643_uc001cfl.1_Silent_p.A213A|ZNF643_uc001cfm.1_Silent_p.A181A	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	315	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			GTGGAAAAGCCTTTAGCCAAA	0.383													29	35					0	0	0.001786	0	0
KCNQ4	9132	broad.mit.edu	37	1	41285908	41285908	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:41285908G>A	uc001cgh.1	+	7	1099	c.1017G>A	c.(1015-1017)AGG>AGA	p.R339R	KCNQ4_uc001cgi.1_Silent_p.R339R	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	339	Cytoplasmic.				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			AGAAGCGGAGGATGCCGGCAG	0.612													7	5					0	0	0.003080	0	0
SCMH1	22955	broad.mit.edu	37	1	41579008	41579008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:41579008G>A	uc001cgo.2	-	8	973	c.662C>T	c.(661-663)CCT>CTT	p.P221L	SCMH1_uc010ojr.1_Intron|SCMH1_uc001cgp.2_Missense_Mutation_p.P160L|SCMH1_uc001cgr.2_Missense_Mutation_p.P160L|SCMH1_uc001cgs.2_Missense_Mutation_p.P231L|SCMH1_uc001cgt.2_Missense_Mutation_p.P160L|SCMH1_uc001cgq.2_Missense_Mutation_p.P174L|SCMH1_uc010ojs.1_RNA	NM_001031694	NP_001026864	Q96GD3	SCMH1_HUMAN	sex comb on midleg 1 isoform 1	221	MBT 2.				anatomical structure morphogenesis|gene silencing|multicellular organismal development|negative regulation of transcription, DNA-dependent		DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)|Breast(333;0.162)	Myeloproliferative disorder(586;0.0393)				CCAGCCCACAGGGAAGATGTC	0.557													35	58					0	0	0.003755	0	0
CCDC30	728621	broad.mit.edu	37	1	43011224	43011224	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:43011224C>T	uc009vwk.1	+	4	509	c.399C>T	c.(397-399)AGC>AGT	p.S133S	CCDC30_uc001chm.2_5'UTR|CCDC30_uc001chn.2_Intron|CCDC30_uc010oju.1_RNA|CCDC30_uc001chp.2_Intron	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	133											0						AAATTCAAAGCCGAAAGGAAG	0.333													34	47					0	0	0.003271	0	0
YBX1	4904	broad.mit.edu	37	1	43166585	43166585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:43166585C>T	uc001chs.2	+	7	1045	c.874C>T	c.(874-876)CCA>TCA	p.P292S		NM_004559	NP_004550	P67809	YBOX1_HUMAN	nuclease sensitive element binding protein 1	292					CRD-mediated mRNA stabilization|negative regulation of transcription, DNA-dependent|nuclear mRNA splicing, via spliceosome|positive regulation of cell division|transcription from RNA polymerase II promoter	CRD-mediated mRNA stability complex|extracellular region|histone pre-mRNA 3'end processing complex|nucleoplasm|stress granule|U12-type spliceosomal complex	double-stranded DNA binding|protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			ovary(4)|upper_aerodigestive_tract(1)	5	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ACGCAGACGCCCAGAAAACCC	0.542													10	51					0	0	0.000673	0	0
CLDN19	149461	broad.mit.edu	37	1	43201639	43201639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:43201639C>T	uc001cht.1	-	4	727	c.536G>A	c.(535-537)GGC>GAC	p.G179D	CLDN19_uc001chu.2_Missense_Mutation_p.G179D|CLDN19_uc010ojv.1_Missense_Mutation_p.A151T	NM_148960	NP_683763	Q8N6F1	CLD19_HUMAN	claudin 19 isoform a	179	Helical; (Potential).				calcium-independent cell-cell adhesion|response to stimulus|visual perception	basolateral plasma membrane|integral to membrane|tight junction	identical protein binding				0	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GAGGAAGGAGCCGCCCAGCAC	0.652													7	1					0	0	0.003080	0	0
WDR65	149465	broad.mit.edu	37	1	43675704	43675704	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:43675704C>T	uc001cip.1	+	11	2167	c.2046C>T	c.(2044-2046)ATC>ATT	p.I682I	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Intron|WDR65_uc001ciq.1_Silent_p.I682I	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	Error:Variant_position_missing_in_Q96MR6_after_alignment										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ATTTATTCATCCATCATTCAT	0.299													21	47					0	0	0.002299	0	0
TIE1	7075	broad.mit.edu	37	1	43786945	43786945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:43786945C>T	uc001ciu.2	+	20	3192	c.3113C>T	c.(3112-3114)TCC>TTC	p.S1038F	TIE1_uc010oke.1_Missense_Mutation_p.S993F|TIE1_uc009vwq.2_Missense_Mutation_p.S994F|TIE1_uc010okg.1_Missense_Mutation_p.S683F	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	1038	Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTCAGCTGGTCCTTTGGAGTC	0.567													38	43					0	0	0.002522	0	0
KIAA0467	23334	broad.mit.edu	37	1	43903468	43903468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:43903468C>T	uc001cjk.1	+	31	4168	c.3706C>T	c.(3706-3708)CGT>TGT	p.R1236C		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2135						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GTAGGGTCCTCGTTCTCCCTT	0.567													47	52					0	0	0.003610	0	0
PTPRF	5792	broad.mit.edu	37	1	44069177	44069177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:44069177C>T	uc001cjr.2	+	15	2771	c.2431C>T	c.(2431-2433)CCC>TCC	p.P811S	PTPRF_uc001cjs.2_Missense_Mutation_p.P802S|PTPRF_uc001cju.2_Missense_Mutation_p.P382S|PTPRF_uc009vwt.2_Missense_Mutation_p.P373S|PTPRF_uc001cjv.2_Missense_Mutation_p.P271S|PTPRF_uc001cjw.2_Missense_Mutation_p.P37S	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	811	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCGCAGCAAGCCCAAAATTGT	0.627													18	45					0	0	0.001523	0	0
KLF17	128209	broad.mit.edu	37	1	44595031	44595031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:44595031G>A	uc001clp.2	+	2	146	c.88G>A	c.(88-90)GAG>AAG	p.E30K	KLF17_uc009vxf.1_5'UTR	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	30					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CAAGGATAACGAGAACTCAGC	0.488													60	86					0	0	0.003610	0	0
BEST4	266675	broad.mit.edu	37	1	45250386	45250386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:45250386C>T	uc001cmm.2	-	8	1112	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K		NM_153274	NP_695006	Q8NFU0	BEST4_HUMAN	bestrophin 4	355	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GGCTGGTCCTCATCCCAGTAC	0.622													31	38					0	0	0.002445	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45553706	45553706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:45553706G>A	uc001cnd.2	-	2	1027	c.799C>T	c.(799-801)CCT>TCT	p.P267S		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	267							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					TCGGAGATAGGAAGACGCAAT	0.448													48	65					0	0	0.003610	0	0
MUTYH	4595	broad.mit.edu	37	1	45798461	45798462	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:45798461_45798462GG>AA	uc001cnm.2	-	7	756_757	c.540_541CC>TT	c.(538-543)GGCCGG>GGTTGG	p.R181W	MUTYH_uc009vxn.2_Intron|MUTYH_uc001cnf.2_Missense_Mutation_p.R156W|MUTYH_uc009vxo.2_Missense_Mutation_p.R156W|MUTYH_uc001cng.2_Missense_Mutation_p.R167W|MUTYH_uc001cnj.2_Missense_Mutation_p.R64W|MUTYH_uc001cni.2_Missense_Mutation_p.R156W|MUTYH_uc001cnh.2_Missense_Mutation_p.R157W|MUTYH_uc001cno.2_Missense_Mutation_p.R64W|MUTYH_uc001cnk.2_Missense_Mutation_p.R41W|MUTYH_uc010oll.1_Missense_Mutation_p.P68L|MUTYH_uc001cnl.2_Missense_Mutation_p.R170W|MUTYH_uc009vxp.2_Missense_Mutation_p.R184W|MUTYH_uc001cnn.2_Missense_Mutation_p.R171W	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	181					depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					TGCAGCCGCCGGCCACGAGAAT	0.55			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				30	63					0	0	0.004672	0	0
DMBX1	127343	broad.mit.edu	37	1	46976938	46976938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:46976938G>A	uc001cpx.2	+	3	695	c.680G>A	c.(679-681)AGG>AAG	p.R227K	DMBX1_uc001cpw.2_Missense_Mutation_p.R222K	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	227				R -> K (in Ref. 2; BAC00920).	brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GGCTGCAAGAGGGGCAGCCCC	0.657													5	6					0	0	0.001984	0	0
DMBX1	127343	broad.mit.edu	37	1	46977753	46977753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:46977753G>A	uc001cpx.2	+	4	751	c.736G>A	c.(736-738)GGG>AGG	p.G246R	DMBX1_uc001cpw.2_Missense_Mutation_p.G241R	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	246					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TGTGGCCCCAGGGGGTGGCCT	0.627													55	73					0	0	0.003610	0	0
MOBKL2C	148932	broad.mit.edu	37	1	47078949	47078949	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:47078949G>A	uc001cqf.3	-	2	276	c.45C>T	c.(43-45)TTC>TTT	p.F15F	MKNK1_uc010omf.1_Intron|MOBKL2C_uc001cqe.3_Silent_p.F67F	NM_201403	NP_958805	Q70IA8	MOL2C_HUMAN	MOB1, Mps One Binder kinase activator-like 2C	15							metal ion binding			pancreas(1)	1	Acute lymphoblastic leukemia(166;0.155)					TCCGCGGCCGGAACGTCTTGT	0.647													34	61					0	0	0.003755	0	0
KIAA0494	9813	broad.mit.edu	37	1	47131012	47131012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:47131012G>A	uc010omh.1	-	10	2122	c.1145C>T	c.(1144-1146)CCC>CTC	p.P382L	ATPAF1_uc001cqg.2_5'UTR|ATPAF1_uc009vyk.2_5'UTR|ATPAF1_uc010omg.1_Silent_p.S9S|ATPAF1_uc001cqh.2_Silent_p.S97S|ATPAF1_uc001cqi.2_Silent_p.S97S	NM_014774	NP_055589	O75071	K0494_HUMAN	hypothetical protein LOC9813	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							calcium ion binding				0	Acute lymphoblastic leukemia(166;0.155)					TCTCCAGGCGGGACTCAAAAG	0.433													14	18					0	0	0.003163	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47366071	47366071	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:47366071G>A	uc001cqo.1	-	1		c.77C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						GCAAGAAGGGGTGAGCCATGA	0.547													7	3					0	0	0.001984	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515671	47515671	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:47515671G>A	uc001cqt.2	+	12	1606	c.1356_splice	c.e12-1	p.R452_splice	CYP4X1_uc001cqr.2_Splice_Site_p.R451_splice|CYP4X1_uc001cqs.2_Splice_Site_p.R387_splice	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,							endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTTGTCTTCAGGAACTGCATT	0.408													59	99					0	0	0.003610	0	0
TAL1	6886	broad.mit.edu	37	1	47685395	47685395	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:47685395C>T	uc001cqx.2	-	4	1570	c.993G>A	c.(991-993)CGG>CGA	p.R331R	TAL1_uc009vyq.2_Missense_Mutation_p.G88D|TAL1_uc001cqy.2_Silent_p.R331R	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	331					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						AGACCCATCACCGAGGGCCGG	0.682			T	TRD@|SIL	lymphoblastic leukemia/biphasic								21	24					0	0	0.001061	0	0
SPATA6	54558	broad.mit.edu	37	1	48877184	48877184	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:48877184G>A	uc001crr.1	-	5	522	c.357C>T	c.(355-357)CAC>CAT	p.H119H	SPATA6_uc001crs.1_Silent_p.H119H|SPATA6_uc010omv.1_Silent_p.H105H|SPATA6_uc001crt.2_Silent_p.H11H	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor	119					cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						TTGAATCATGGTGTCCAGACA	0.413													22	32					0	0	0.003954	0	0
TTC39A	22996	broad.mit.edu	37	1	51767299	51767299	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:51767299C>T	uc001csl.2	-	12	1211	c.1106G>A	c.(1105-1107)TGG>TAG	p.W369*	TTC39A_uc001csk.2_Nonsense_Mutation_p.W334*|TTC39A_uc010ond.1_Nonsense_Mutation_p.W306*|TTC39A_uc010one.1_Nonsense_Mutation_p.W333*|TTC39A_uc010onf.1_Nonsense_Mutation_p.W337*|TTC39A_uc001csn.2_Nonsense_Mutation_p.W368*|TTC39A_uc001cso.1_3'UTR|TTC39A_uc009vyy.1_Nonsense_Mutation_p.W306*	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	369							binding			skin(1)	1						GGACATCTTCCACTGGCCCTT	0.587													14	16					0	0	0.001855	0	0
SLC1A7	6512	broad.mit.edu	37	1	53558447	53558447	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:53558447G>A	uc001cuy.2	-	7	978	c.810C>T	c.(808-810)TTC>TTT	p.F270F	SLC1A7_uc001cux.2_5'Flank	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	270	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	ACACAATGCCGAAGGGGAAAT	0.672													16	24					0	0	0.004990	0	0
LRP8	7804	broad.mit.edu	37	1	53736906	53736906	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:53736906G>A	uc001cvi.1	-	7	1261	c.1119C>T	c.(1117-1119)ACC>ACT	p.T373T	LRP8_uc001cvh.1_5'UTR|LRP8_uc001cvk.1_Silent_p.T203T|LRP8_uc001cvj.1_Silent_p.T373T|LRP8_uc001cvl.1_Silent_p.T244T|LRP8_uc001cvm.1_5'Flank	NM_004631	NP_004622	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein	373	EGF-like 1.|Extracellular (Potential).				cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola	calcium ion binding|very-low-density lipoprotein particle receptor activity				0						CACCGCCACAGGTCTTCTGGT	0.572													25	51					0	0	0.003954	0	0
GLIS1	148979	broad.mit.edu	37	1	53980412	53980412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:53980412G>A	uc001cvr.1	-	7	1811	c.1244C>T	c.(1243-1245)TCG>TTG	p.S415L		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	415					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						CAGGAGGCCCGATGCAAGTCC	0.612													19	24					0	0	0.001216	0	0
GLIS1	148979	broad.mit.edu	37	1	54060297	54060297	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:54060297G>A	uc001cvr.1	-	3	846	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	93					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GAGACGTCTGGGAGGAGCGGA	0.677													7	34					0	0	0.003080	0	0
CYB5RL	606495	broad.mit.edu	37	1	54640385	54640385	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:54640385G>A	uc009vzo.2	-	8	1175	c.855C>T	c.(853-855)TTC>TTT	p.F285F	CYB5RL_uc001cww.2_Silent_p.F175F|CYB5RL_uc001cwx.3_RNA|CYB5RL_uc001cwy.3_Silent_p.F137F	NM_001031672	NP_001026842	Q6IPT4	NB5R5_HUMAN	cytochrome b5 reductase-like	285							cytochrome-b5 reductase activity				0						AGACCAGTGCGAATGGCTTTC	0.552													14	19					0	0	0.004007	0	0
CYB5RL	606495	broad.mit.edu	37	1	54644876	54644876	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:54644876G>A	uc009vzo.2	-	7	1010	c.690C>T	c.(688-690)TTC>TTT	p.F230F	CYB5RL_uc001cww.2_Silent_p.F120F|CYB5RL_uc001cwx.3_RNA|CYB5RL_uc001cwy.3_Silent_p.F82F	NM_001031672	NP_001026842	Q6IPT4	NB5R5_HUMAN	cytochrome b5 reductase-like	230							cytochrome-b5 reductase activity				0						GCTCTTGGAGGAAGGTTTTCA	0.488													12	12					0	0	0.003163	0	0
C8B	732	broad.mit.edu	37	1	57411647	57411647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:57411647G>A	uc001cyp.2	-	7	1019	c.952C>T	c.(952-954)CTT>TTT	p.L318F	C8B_uc010oon.1_Missense_Mutation_p.L256F|C8B_uc010ooo.1_Missense_Mutation_p.L266F	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	318	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ACTCTCTGAAGGAACTCGTAA	0.483													23	34					0	0	0.002299	0	0
C8B	732	broad.mit.edu	37	1	57422537	57422537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:57422537G>A	uc001cyp.2	-	3	363	c.296C>T	c.(295-297)CCG>CTG	p.P99L	C8B_uc010oon.1_Missense_Mutation_p.P37L|C8B_uc010ooo.1_Missense_Mutation_p.P47L	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	99	TSP type-1 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GAAGTTGCACGGTTCCCCATG	0.512													50	54					0	0	0.003610	0	0
DAB1	1600	broad.mit.edu	37	1	57535040	57535040	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:57535040A>T	uc001cys.1	-	10	1330	c.656T>A	c.(655-657)ATT>AAT	p.I219N	DAB1_uc001cyt.1_Missense_Mutation_p.I219N|DAB1_uc001cyq.1_Intron|DAB1_uc001cyr.1_Intron|DAB1_uc009vzw.1_Intron|DAB1_uc009vzx.1_Missense_Mutation_p.I219N	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	219					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TACCTGATAAATGTTTTCTTC	0.423													49	76					0	0	0.003610	0	0
DAB1	1600	broad.mit.edu	37	1	57611028	57611028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:57611028C>T	uc001cys.1	-	5	816	c.142G>A	c.(142-144)GGG>AGG	p.G48R	DAB1_uc001cyt.1_Missense_Mutation_p.G48R|DAB1_uc001cyq.1_Missense_Mutation_p.G48R|DAB1_uc001cyr.1_Missense_Mutation_p.G48R|DAB1_uc009vzw.1_Missense_Mutation_p.G48R|DAB1_uc009vzx.1_Missense_Mutation_p.G48R	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	48	PID.				cell differentiation|nervous system development					skin(2)|ovary(1)	3						TCATCAATCCCGATCAATTTG	0.413													27	37					0	0	0.001512	0	0
CYP2J2	1573	broad.mit.edu	37	1	60377397	60377397	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:60377397G>A	uc001czq.2	-	4	572	c.567C>T	c.(565-567)TCC>TCT	p.S189S		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	189					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					AAATGATATTGGAAACTGCAT	0.448													51	72					0	0	0.003610	0	0
INADL	10207	broad.mit.edu	37	1	62263076	62263076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:62263076C>T	uc001dab.2	+	11	1492	c.1378C>T	c.(1378-1380)CCA>TCA	p.P460S	INADL_uc009waf.1_Missense_Mutation_p.P460S|INADL_uc001daa.2_Missense_Mutation_p.P460S|INADL_uc001dad.3_Missense_Mutation_p.P157S	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	460					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						ATCTACTTCTCCACTTGAACC	0.443													45	62					0	0	0.003610	0	0
INADL	10207	broad.mit.edu	37	1	62582853	62582853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:62582853C>T	uc001dab.2	+	37	4967	c.4853C>T	c.(4852-4854)TCC>TTC	p.S1618F	INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.S432F|INADL_uc009wag.2_Missense_Mutation_p.S402F	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1618					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CGAGCTGGTTCCTGGACCTCC	0.488													24	36					0	0	0.001786	0	0
L1TD1	54596	broad.mit.edu	37	1	62672548	62672548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:62672548G>A	uc001dae.3	+	3	550	c.248G>A	c.(247-249)GGA>GAA	p.G83E		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	83										ovary(1)|skin(1)	2						gttttagggggaaaagctaca	0.05													24	48					0	0	0.002299	0	0
KANK4	163782	broad.mit.edu	37	1	62740337	62740337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:62740337C>T	uc001dah.3	-	3	816	c.439G>A	c.(439-441)GAT>AAT	p.D147N	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	147										ovary(3)|skin(2)|lung(1)	6						AGCTCGGCATCCTCTGGCTCA	0.612													10	22					0	0	0.000443	0	0
ROR1	4919	broad.mit.edu	37	1	64643921	64643921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:64643921C>T	uc001dbj.2	+	9	2596	c.2197C>T	c.(2197-2199)CCT>TCT	p.P733S	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	733	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						GAATGAGATTCCTTCTAGGAG	0.498													28	35					0	0	0.002445	0	0
RAVER2	55225	broad.mit.edu	37	1	65272917	65272917	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:65272917G>A	uc001dbs.1	+	9	1479	c.1401G>A	c.(1399-1401)ACG>ACA	p.T467T	RAVER2_uc001dbt.1_Silent_p.T359T|RAVER2_uc010opb.1_Intron	NM_018211	NP_060681	Q9HCJ3	RAVR2_HUMAN	ribonucleoprotein, PTB-binding 2	480						cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)	1						CTCAAACAACGATAACAGCTG	0.403													20	31					0	0	0.002780	0	0
RAVER2	55225	broad.mit.edu	37	1	65273010	65273010	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:65273010G>A	uc001dbs.1	+	9	1572	c.1494G>A	c.(1492-1494)CAG>CAA	p.Q498Q	RAVER2_uc001dbt.1_Silent_p.Q390Q|RAVER2_uc010opb.1_Intron	NM_018211	NP_060681	Q9HCJ3	RAVR2_HUMAN	ribonucleoprotein, PTB-binding 2	511						cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)	1						AGGAGAAACAGCCAGCCACGG	0.512													15	29					0	0	0.004990	0	0
SERBP1	26135	broad.mit.edu	37	1	67878897	67878897	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:67878897A>G	uc001ddv.2	-	8	1360	c.1220T>C	c.(1219-1221)CTG>CCG	p.L407P	SERBP1_uc001ddx.2_Missense_Mutation_p.L401P|SERBP1_uc001ddy.2_Missense_Mutation_p.L386P|SERBP1_uc001ddw.2_Missense_Mutation_p.L392P	NM_001018067	NP_001018077	Q8NC51	PAIRB_HUMAN	SERPINE1 mRNA binding protein 1 isoform 1	407					regulation of mRNA stability	nucleus|perinuclear region of cytoplasm	mRNA 3'-UTR binding|protein binding			skin(1)	1						CAGTTAAGCCAGAGCTGGGAA	0.408													15	12					0	0	0.004990	0	0
WLS	79971	broad.mit.edu	37	1	68603577	68603577	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:68603577G>A	uc001def.1	-	11	1673	c.1402C>T	c.(1402-1404)CAA>TAA	p.Q468*	uc001deb.1_Intron|uc001dec.1_Intron|WLS_uc001dee.2_Nonsense_Mutation_p.Q466*|WLS_uc001deg.1_Nonsense_Mutation_p.Q377*|WLS_uc009wbf.1_Nonsense_Mutation_p.Q423*	NM_024911	NP_079187	Q5T9L3	WLS_HUMAN	G protein-coupled receptor 177 isoform 1	468	Lumenal (Potential).				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Wnt receptor signaling pathway	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	signal transducer activity				0						CTGTTCACTTGGACTGTGACG	0.438													26	29					0	0	0.001061	0	0
DEPDC1	55635	broad.mit.edu	37	1	68944952	68944952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:68944952G>A	uc001dem.3	-	10	2104	c.1987C>T	c.(1987-1989)CTT>TTT	p.L663F	DEPDC1_uc001dej.3_Missense_Mutation_p.L31F|DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Missense_Mutation_p.L379F	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	663					intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		AGCTCATCAAGATCCACTTCT	0.348													25	23					0	0	0.003330	0	0
LRRC7	57554	broad.mit.edu	37	1	70226019	70226019	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:70226019C>T	uc001dep.2	+	1	162	c.132C>T	c.(130-132)TTC>TTT	p.F44F	LRRC7_uc001deo.1_Silent_p.F82F|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	44	LRR 1.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						TCTTTAACTTCGAACGAACAT	0.393													14	23					0	0	0.003163	0	0
LRRC7	57554	broad.mit.edu	37	1	70291500	70291500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:70291500C>T	uc001dep.2	+	3	407	c.377C>T	c.(376-378)CCC>CTC	p.P126L	LRRC7_uc001deo.1_Missense_Mutation_p.P164L|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	126	LRR 5.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGTGTCAATCCCATTTCTAAG	0.264													11	24					0	0	0.002450	0	0
LRRC7	57554	broad.mit.edu	37	1	70504756	70504756	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:70504756A>T	uc001dep.2	+	19	3165	c.3135A>T	c.(3133-3135)GAA>GAT	p.E1045D	LRRC7_uc009wbg.2_Missense_Mutation_p.E329D|LRRC7_uc001deq.2_Missense_Mutation_p.E286D	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1045						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						TGAAAGCCGAAAAGAGGATAC	0.438													14	26					0	0	0.004007	0	0
NEGR1	257194	broad.mit.edu	37	1	71873224	71873224	+	Missense_Mutation	SNP	C	T	T	rs34069372		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:71873224C>T	uc001dfw.2	-	7	1070	c.970G>A	c.(970-972)GGG>AGG	p.G324R	NEGR1_uc001dfv.2_Missense_Mutation_p.G196R|NEGR1_uc010oqs.1_Missense_Mutation_p.G280R	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	324					cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		TCAGCGCTCCCGGTAATTCCA	0.388													6	18					0	0	0.003080	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74506908	74506908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:74506908C>T	uc001dfy.3	-	7	1899	c.1707G>A	c.(1705-1707)ATG>ATA	p.M569I	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	569	Potential.									ovary(2)	2						TAACTTTTTTCATTTCTTTAA	0.294													18	43					0	0	0.000743	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74575123	74575123	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:74575123G>A	uc001dfy.3	-	5	1014	c.822C>T	c.(820-822)TTC>TTT	p.F274F	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	274										ovary(2)	2						TTTCAGGTTTGAAAAAGAGAT	0.254													12	26					0	0	0.001368	0	0
C1orf173	127254	broad.mit.edu	37	1	75038101	75038102	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:75038101_75038102AG>TA	uc001dgg.2	-	14	3511_3512	c.3292_3293CT>TA	c.(3292-3294)CTT>TAT	p.L1098Y		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1098	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTCCGCTTTAAGTTTTTGCTCT	0.446													65	90					0	0	0.004672	0	0
C1orf173	127254	broad.mit.edu	37	1	75055612	75055612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:75055612C>T	uc001dgg.2	-	12	2098	c.1879G>A	c.(1879-1881)GAT>AAT	p.D627N	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.D421N	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	627	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTTGGCTTATCATTTTCACTC	0.458													38	63					0	0	0.001706	0	0
MSH4	4438	broad.mit.edu	37	1	76378490	76378490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:76378490G>A	uc001dhd.1	+	20	2770	c.2729G>A	c.(2728-2730)CGA>CAA	p.R910Q		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	910					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						GACAGTTTACGAATATATTTA	0.388								MMR					20	23					0	0	0.001882	0	0
ASB17	127247	broad.mit.edu	37	1	76384686	76384686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:76384686G>A	uc001dhe.1	-	3	979	c.839C>T	c.(838-840)TCA>TTA	p.S280L	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	280	SOCS box.				intracellular signal transduction					ovary(1)	1						AATTAGAAGTGAAAATATTCC	0.348													33	61					0	0	0.003271	0	0
AK5	26289	broad.mit.edu	37	1	77806190	77806190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:77806190G>A	uc001dhn.2	+	6	1085	c.828G>A	c.(826-828)ATG>ATA	p.M276I	AK5_uc001dho.2_Missense_Mutation_p.M250I	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	276					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						GGAGACTAATGAACTTCAAGC	0.438													29	43					0	0	0.001061	0	0
FAM73A	374986	broad.mit.edu	37	1	78309083	78309083	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:78309083C>T	uc001dhx.2	+	8	1019	c.987C>T	c.(985-987)TCC>TCT	p.S329S	FAM73A_uc010ork.1_Silent_p.S329S|FAM73A_uc010orl.1_Silent_p.S291S|FAM73A_uc001dhy.1_Silent_p.S118S	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	329						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		CCTTTGCTTCCGCAGCAGAGG	0.413													35	36					0	0	0.004289	0	0
NEXN	91624	broad.mit.edu	37	1	78395031	78395031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:78395031G>A	uc001dic.3	+	9	1192	c.895G>A	c.(895-897)GCA>ACA	p.A299T	NEXN_uc001dia.3_Missense_Mutation_p.A285T|NEXN_uc009wcb.1_Missense_Mutation_p.A221T|NEXN_uc001dib.3_Missense_Mutation_p.A235T|NEXN_uc001did.1_Missense_Mutation_p.A209T|NEXN_uc001dif.1_Missense_Mutation_p.A191T	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	299	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		CCAAGACACAGCAAAAATTTT	0.229													15	40					0	0	0.004007	0	0
ELTD1	64123	broad.mit.edu	37	1	79357337	79357337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:79357337C>T	uc001diq.3	-	14	2038	c.1882G>A	c.(1882-1884)GGC>AGC	p.G628S		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	628	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		CAGGTGGTGCCGAGAAGGAAC	0.473													13	28					0	0	0.001855	0	0
LPHN2	23266	broad.mit.edu	37	1	82417794	82417794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:82417794G>A	uc001dit.3	+	9	1931	c.1750G>A	c.(1750-1752)GAA>AAA	p.E584K	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.E584K|LPHN2_uc001div.2_Missense_Mutation_p.E584K|LPHN2_uc009wcd.2_Missense_Mutation_p.E584K|LPHN2_uc001diw.2_Missense_Mutation_p.E155K	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	584	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GAAACCTAGTGAAAAAGATTC	0.433													23	25					0	0	0.003954	0	0
LPHN2	23266	broad.mit.edu	37	1	82433841	82433841	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:82433841C>T	uc001dit.3	+	13	2611	c.2430C>T	c.(2428-2430)CAC>CAT	p.H810H	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.H810H|LPHN2_uc001div.2_Silent_p.H810H|LPHN2_uc009wcd.2_Silent_p.H810H|LPHN2_uc001diw.2_Silent_p.H394H|LPHN2_uc009wce.1_5'Flank	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	823	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CATGCAGCCACCTAACCAATT	0.428													25	32					0	0	0.005443	0	0
MCOLN2	255231	broad.mit.edu	37	1	85403518	85403518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:85403518G>A	uc001dkm.2	-	11	1496	c.1255C>T	c.(1255-1257)CGG>TGG	p.R419W	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	419						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		GCACAAAACCGAAGAACTTTT	0.403													15	14					0	0	0.002450	0	0
COL24A1	255631	broad.mit.edu	37	1	86315041	86315041	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:86315041T>A	uc001dlj.2	-	38	3391	c.3349A>T	c.(3349-3351)AAA>TAA	p.K1117*	COL24A1_uc001dli.2_Nonsense_Mutation_p.K253*|COL24A1_uc010osd.1_Nonsense_Mutation_p.K417*|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1117	Collagen-like 11.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		ATTACCTTTTTTCCTGGACGA	0.343													55	90					0	0	0.003610	0	0
COL24A1	255631	broad.mit.edu	37	1	86557978	86557978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:86557978G>A	uc001dlj.2	-	6	1667	c.1625C>T	c.(1624-1626)TCC>TTC	p.S542F	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.S542F	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	542	Collagen-like 1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TTGACCTGGGGAAAATCCTGG	0.303													38	73					0	0	0.003610	0	0
COL24A1	255631	broad.mit.edu	37	1	86590795	86590795	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:86590795G>A	uc001dlj.2	-	3	1266	c.1224C>T	c.(1222-1224)CTC>CTT	p.L408L	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Silent_p.L408L	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	408					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TAGCCTTCTTGAGATTAGTAA	0.363													33	39					0	0	0.003271	0	0
CLCA1	1179	broad.mit.edu	37	1	86959980	86959980	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:86959980G>A	uc001dlt.2	+	11	1920	c.1791G>A	c.(1789-1791)ACG>ACA	p.T597T	CLCA1_uc001dls.1_Silent_p.T536T	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	597					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		CTTCCAAAACGAACAAGGACA	0.517													9	14					0	0	0.000978	0	0
CLCA4	22802	broad.mit.edu	37	1	87040296	87040296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:87040296G>A	uc009wcs.2	+	10	1585	c.1541G>A	c.(1540-1542)GGA>GAA	p.G514E	CLCA4_uc009wct.2_Missense_Mutation_p.G277E|CLCA4_uc009wcu.2_Missense_Mutation_p.G334E	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	514						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		AGTACAGTGGGAAAGGACACG	0.393													43	36					0	0	0.002852	0	0
CLCA4	22802	broad.mit.edu	37	1	87040390	87040390	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:87040390G>A	uc009wcs.2	+	10	1679	c.1635G>A	c.(1633-1635)GTG>GTA	p.V545V	CLCA4_uc009wct.2_Silent_p.V308V|CLCA4_uc009wcu.2_Silent_p.V365V	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	545						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		ATTTCACAGTGGATGCAACTT	0.413													26	61					0	0	0.001271	0	0
CLCA4	22802	broad.mit.edu	37	1	87041210	87041210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:87041210G>A	uc009wcs.2	+	11	1923	c.1879G>A	c.(1879-1881)GCC>ACC	p.A627T	CLCA4_uc009wct.2_Missense_Mutation_p.A390T|CLCA4_uc009wcu.2_Missense_Mutation_p.A447T	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	627						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TGTTCTTGGAGCCAATGTGAC	0.378													51	63					0	0	0.003610	0	0
CLCA4	22802	broad.mit.edu	37	1	87045066	87045066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:87045066G>A	uc009wcs.2	+	13	2196	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K	CLCA4_uc009wct.2_Missense_Mutation_p.E481K|CLCA4_uc009wcu.2_Missense_Mutation_p.E538K	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	718						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		GCCAAGACCTGAAATTGATGA	0.438													30	46					0	0	0.005524	0	0
CLCA4	22802	broad.mit.edu	37	1	87045722	87045722	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:87045722G>A	uc009wcs.2	+	14	2498	c.2454G>A	c.(2452-2454)AAG>AAA	p.K818K	CLCA4_uc009wct.2_Silent_p.K581K|CLCA4_uc009wcu.2_Silent_p.K638K	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	818						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TGTCACCAAAGGAGGCCAACT	0.338													33	37					0	0	0.002445	0	0
CLCA3P	9629	broad.mit.edu	37	1	87101645	87101645	+	RNA	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:87101645G>T	uc010osh.1	+	3		c.325G>T				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						TTAGGCAGATGTCATAGTTGC	0.289													34	52					1.07121e-22	1.8627e-22	0.001485	1	0
PKN2	5586	broad.mit.edu	37	1	89290058	89290058	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:89290058T>A	uc001dmn.2	+	18	2750	c.2408T>A	c.(2407-2409)CTT>CAT	p.L803H	PKN2_uc010osp.1_Missense_Mutation_p.L787H|PKN2_uc010osq.1_Missense_Mutation_p.L646H|PKN2_uc009wcv.2_Missense_Mutation_p.L755H|PKN2_uc010osr.1_Missense_Mutation_p.L468H	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	803	Protein kinase.				signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		GATTTTGGTCTTTGCAAAGAA	0.308													32	56					0	0	0.002096	0	0
GBP3	2635	broad.mit.edu	37	1	89480310	89480310	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:89480310G>A	uc001dmt.2	-	4	553	c.348C>T	c.(346-348)TTC>TTT	p.F116F	GBP3_uc010oss.1_Silent_p.F37F|GBP3_uc001dmu.2_5'UTR|GBP3_uc001dmv.2_RNA	NM_018284	NP_060754	Q9H0R5	GBP3_HUMAN	guanylate binding protein 3	116	Helical; (Potential).					integral to membrane	GTP binding|GTPase activity			ovary(1)|pancreas(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0103)|Epithelial(280;0.0293)		CGGCCAGGGTGAAGATCCAGG	0.502													43	52					0	0	0.003610	0	0
LOC400759	400759	broad.mit.edu	37	1	89889905	89889905	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:89889905G>A	uc009wcy.1	+	5		c.646G>A				NR_003133				Homo sapiens cDNA, FLJ17004.												0						TGGAACAGAAGGAGAGGAGTT	0.473													167	271					0	0	0.003610	0	0
EVI5	7813	broad.mit.edu	37	1	92979374	92979374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:92979374G>A	uc001dox.2	-	18	2282	c.2272C>T	c.(2272-2274)CCT>TCT	p.P758S	EVI5_uc010otf.1_Missense_Mutation_p.P769S	NM_005665	NP_005656	O60447	EVI5_HUMAN	ecotropic viral integration site 5	758	Targeting to the centrosomes.|Interaction with AURKB and INCENP.				cell cycle|cell division|cell proliferation|multicellular organismal development	microtubule organizing center|nucleus|spindle	protein binding|Rab GTPase activator activity			ovary(1)|breast(1)	2		all_lung(203;0.00146)|Lung NSC(277;0.00565)|all_neural(321;0.185)|Melanoma(281;0.193)|Glioma(108;0.203)		Epithelial(280;8.09e-25)|OV - Ovarian serous cystadenocarcinoma(397;1.27e-22)|all cancers(265;1.74e-21)|GBM - Glioblastoma multiforme(16;0.00233)|BRCA - Breast invasive adenocarcinoma(282;0.211)		CCGTGCAAAGGAAAACCAACA	0.433													37	42					0	0	0.005524	0	0
EVI5	7813	broad.mit.edu	37	1	93202034	93202034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:93202034G>A	uc001dox.2	-	2	212	c.202C>T	c.(202-204)CCA>TCA	p.P68S	EVI5_uc010otf.1_Missense_Mutation_p.P68S	NM_005665	NP_005656	O60447	EVI5_HUMAN	ecotropic viral integration site 5	68	Interaction with alpha-tubulin, gamma- tubulin, BIRC5 and FBXO5.|Ser-rich.				cell cycle|cell division|cell proliferation|multicellular organismal development	microtubule organizing center|nucleus|spindle	protein binding|Rab GTPase activator activity			ovary(1)|breast(1)	2		all_lung(203;0.00146)|Lung NSC(277;0.00565)|all_neural(321;0.185)|Melanoma(281;0.193)|Glioma(108;0.203)		Epithelial(280;8.09e-25)|OV - Ovarian serous cystadenocarcinoma(397;1.27e-22)|all cancers(265;1.74e-21)|GBM - Glioblastoma multiforme(16;0.00233)|BRCA - Breast invasive adenocarcinoma(282;0.211)		GAAAGGGCTGGTGTTGATAGT	0.468													42	53					0	0	0.002222	0	0
FNBP1L	54874	broad.mit.edu	37	1	93987662	93987662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:93987662C>T	uc001dpw.2	+	3	164	c.164C>T	c.(163-165)CCC>CTC	p.P55L	FNBP1L_uc001dpv.2_Missense_Mutation_p.P55L	NM_001024948	NP_001020119	Q5T0N5	FBP1L_HUMAN	formin binding protein 1-like isoform 1	55	FCH.|Induction of membrane tubulation (By similarity).				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	lipid binding				0		all_lung(203;0.00206)|Lung NSC(277;0.00902)|Melanoma(281;0.155)		all cancers(265;0.00666)|GBM - Glioblastoma multiforme(16;0.0378)|Epithelial(280;0.111)		AAGTACTGCCCCAAACGTTCA	0.234													5	9					0	0	0.001984	0	0
ABCA4	24	broad.mit.edu	37	1	94514507	94514507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:94514507G>A	uc001dqh.2	-	18	2764	c.2660C>T	c.(2659-2661)TCA>TTA	p.S887L	ABCA4_uc010otn.1_Missense_Mutation_p.S813L	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	887	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTCTCTGGTTGAACACCCTGC	0.527													15	21					0	0	0.004990	0	0
ABCA4	24	broad.mit.edu	37	1	94577031	94577031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:94577031C>T	uc001dqh.2	-	3	369	c.265G>A	c.(265-267)GAA>AAA	p.E89K	ABCA4_uc010otn.1_Missense_Mutation_p.E89K	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	89	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CCAGGAGATTCTCCTGGGGTG	0.512													14	13					0	0	0.001855	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94650465	94650465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:94650465C>T	uc001dqj.3	-	18	2441	c.2072G>A	c.(2071-2073)TGT>TAT	p.C691Y	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Missense_Mutation_p.C257Y	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	691	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CTCTGAGGCACATATTTTGAG	0.328													30	40					0	0	0.002836	0	0
RWDD3	25950	broad.mit.edu	37	1	95712207	95712208	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:95712207_95712208AC>TT	uc009wdu.2	+	3	759_760	c.683_684AC>TT	c.(682-684)CAC>CTT	p.H228L	RWDD3_uc001drf.3_Intron|RWDD3_uc001drh.3_3'UTR|RWDD3_uc009wdv.2_RNA|RWDD3_uc001drg.3_RNA|RWDD3_uc001dri.3_3'UTR	NM_015485	NP_056300	Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3 isoform a	228						cytoplasm|nucleus	protein binding			ovary(1)	1		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		CAGACAGAACACAAAAGGTATA	0.322													28	46					0	0	0.004672	0	0
DPYD	1806	broad.mit.edu	37	1	97770838	97770838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:97770838C>T	uc001drv.2	-	18	2413	c.2276G>A	c.(2275-2277)CGA>CAA	p.R759Q		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	759					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ATATGTAGTTCGCTTTGCAAT	0.478													37	52					0	0	0.004289	0	0
DPYD	1806	broad.mit.edu	37	1	98039398	98039398	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:98039398C>T	uc001drv.2	-	11	1394	c.1257G>A	c.(1255-1257)TGG>TGA	p.W419*		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	419					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CATCTTCATTCCATTTTCCAG	0.453													44	50					0	0	0.003610	0	0
DPYD	1806	broad.mit.edu	37	1	98144734	98144734	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:98144734A>T	uc001drv.2	-	8	904	c.767T>A	c.(766-768)ATT>AAT	p.I256N		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	256					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTTACCGCAAATTATCTATAA	0.284													4	15					0	0	0.000602	0	0
SLC35A3	23443	broad.mit.edu	37	1	100464871	100464871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:100464871C>T	uc001dsp.1	+	3	439	c.242C>T	c.(241-243)CCT>CTT	p.P81L	SLC35A3_uc001dsq.1_Missense_Mutation_p.P81L|SLC35A3_uc009wdy.1_Missense_Mutation_p.P81L|SLC35A3_uc001dsr.1_Missense_Mutation_p.P123L|SLC35A3_uc001dss.1_5'UTR	NM_012243	NP_036375	Q9Y2D2	S35A3_HUMAN	solute carrier family 35 member 3A	81					UDP-N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	sugar:hydrogen symporter activity|UDP-N-acetylglucosamine transmembrane transporter activity				0		all_epithelial(167;0.000686)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.124)|all cancers(265;0.198)|Lung(183;0.199)		CTTAATAAACCTATGGAAACA	0.294													29	58					0	0	0.001271	0	0
OLFM3	118427	broad.mit.edu	37	1	102296230	102296230	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:102296230G>A	uc001duf.2	-	3	501	c.430C>T	c.(430-432)CAG>TAG	p.Q144*	OLFM3_uc001dug.2_Nonsense_Mutation_p.Q124*|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Nonsense_Mutation_p.Q49*|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	144	Potential.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		AAACCTACCTGAAAATGCTTG	0.418													62	91					0	0	0.003610	0	0
COL11A1	1301	broad.mit.edu	37	1	103467519	103467519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:103467519G>A	uc001dul.2	-	24	2422	c.2104C>T	c.(2104-2106)CCT>TCT	p.P702S	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.P714S|COL11A1_uc001dun.2_Missense_Mutation_p.P663S|COL11A1_uc009weh.2_Missense_Mutation_p.P586S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	702	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TGTGGACCAGGAAGACCCTAT	0.348													32	37					0	0	0.005524	0	0
COL11A1	1301	broad.mit.edu	37	1	103488462	103488462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:103488462C>T	uc001dul.2	-	8	1399	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.E373K|COL11A1_uc001dun.2_Missense_Mutation_p.E322K|COL11A1_uc009weh.2_Intron	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	361	Nonhelical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCTTTGTTTTCATATAGTGTA	0.323													29	46					0	0	0.001061	0	0
AKNAD1	254268	broad.mit.edu	37	1	109363230	109363230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:109363230C>T	uc001dwa.2	-	14	2455	c.2186G>A	c.(2185-2187)CGG>CAG	p.R729Q	AKNAD1_uc001dwb.2_Intron	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	729										ovary(3)	3						AGAACAGATCCGTTTGGGTTT	0.328													35	76					0	0	0.004289	0	0
SARS	6301	broad.mit.edu	37	1	109770988	109770989	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:109770988_109770989GG>TT	uc001dwu.1	+	3	297_298	c.222_223GG>TT	c.(220-225)GTGGGA>GTTTGA	p.G75*	SARS_uc001dwt.1_Nonsense_Mutation_p.G75*|SARS_uc001dwv.1_Nonsense_Mutation_p.G75*|SARS_uc001dww.1_Nonsense_Mutation_p.G8*|SARS_uc001dwx.1_Nonsense_Mutation_p.G75*|SARS_uc009wfa.1_Nonsense_Mutation_p.G75*|SARS_uc001dwy.1_5'UTR|SARS_uc001dwz.1_5'Flank	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	75					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	AAGAGCCAGTGGGAGATGATGA	0.371													12	533					0	0	0.004672	0	0
PSRC1	84722	broad.mit.edu	37	1	109824339	109824340	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:109824339_109824340GG>AA	uc001dxg.2	-	4	542_543	c.420_421CC>TT	c.(418-423)TCCCCA>TCTTCA	p.P141S	PSRC1_uc001dxb.2_5'UTR|PSRC1_uc001dxc.2_Missense_Mutation_p.P141S|PSRC1_uc001dxd.2_Missense_Mutation_p.P141S|PSRC1_uc001dxe.2_Missense_Mutation_p.P141S|PSRC1_uc001dxf.2_Missense_Mutation_p.P141S|PSRC1_uc001dxh.2_Missense_Mutation_p.P141S|PSRC1_uc001dxi.2_Missense_Mutation_p.P141S|PSRC1_uc001dxj.2_Missense_Mutation_p.P141S	NM_001032290	NP_001027461	Q6PGN9	PSRC1_HUMAN	proline/serine-rich coiled-coil 1 isoform c	141	4 X 4 AA repeats of P-X-X-P.				cell division|microtubule bundle formation|mitotic metaphase plate congression|negative regulation of cell growth|positive regulation of microtubule polymerization|positive regulation of transcription, DNA-dependent|regulation of mitotic spindle organization	cytosol|midbody|spindle pole	microtubule binding				0		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0286)|Lung(183;0.0658)|COAD - Colon adenocarcinoma(174;0.112)|Epithelial(280;0.188)|all cancers(265;0.213)		AGGCTGCTTGGGGAGGGGGTGC	0.599													143	191					0	0	0.004672	0	0
SYPL2	284612	broad.mit.edu	37	1	110018278	110018278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:110018278G>A	uc001dxp.2	+	3	571	c.205G>A	c.(205-207)GAA>AAA	p.E69K	SYPL2_uc001dxo.2_Missense_Mutation_p.E69K|SYPL2_uc010ovk.1_Missense_Mutation_p.E69K|SYPL2_uc001dxq.2_5'Flank	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	69	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		CTGCAACAACGAAGCCAAGGA	0.522													133	264					0	0	0.003610	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110030402	110030402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:110030402C>T	uc001dxr.2	+	5	691	c.676C>T	c.(676-678)CCT>TCT	p.P226S	ATXN7L2_uc001dxs.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	226										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		CAGGCTGCCCCCTAAAACCCA	0.587													77	89					0	0	0.003610	0	0
CSF1	1435	broad.mit.edu	37	1	110466437	110466438	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:110466437_110466438GG>AA	uc001dyu.2	+	6	1607_1608	c.1194_1195GG>AA	c.(1192-1197)CCGGAG>CCAAAG	p.E399K	CSF1_uc001dyt.2_Intron|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Missense_Mutation_p.E399K	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	399	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		GAGACCCCCCGGAGCCAGGCTC	0.668													11	16					0	0	0.004672	0	0
SLC6A17	388662	broad.mit.edu	37	1	110740838	110740838	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:110740838C>T	uc009wfq.2	+	12	2417	c.1956C>T	c.(1954-1956)TCC>TCT	p.S652S		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	652	Cytoplasmic (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		ACACCCTCTCCGTGTCCTACA	0.592													9	7					0	0	0.000443	0	0
KCNA3	3738	broad.mit.edu	37	1	111215758	111215758	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:111215758C>T	uc001dzv.1	-	1	1898	c.1674G>A	c.(1672-1674)ACG>ACA	p.T558T		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	558						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATTATTGTTCGTGGTGCAGG	0.458													48	63					0	0	0.003610	0	0
CD53	963	broad.mit.edu	37	1	111435132	111435132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:111435132G>A	uc001dzw.2	+	4	400	c.229G>A	c.(229-231)GAA>AAA	p.E77K	CD53_uc001dzx.2_Missense_Mutation_p.E77K|CD53_uc010owa.1_Missense_Mutation_p.E77K|CD53_uc001dzy.2_Missense_Mutation_p.E77K	NM_001040033	NP_001035122	P19397	CD53_HUMAN	CD53 antigen	77	Cytoplasmic (Potential).				signal transduction	integral to membrane|plasma membrane					0		all_cancers(81;1.06e-05)|all_epithelial(167;1.95e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0264)|Colorectal(144;0.0375)|all cancers(265;0.11)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.141)|LUSC - Lung squamous cell carcinoma(189;0.144)		CTCTATCAAGGAAAACAAGTG	0.517													55	122					0	0	0.003610	0	0
C1orf103	55791	broad.mit.edu	37	1	111494466	111494466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:111494466G>A	uc001eaa.2	-	2	1296	c.1040C>T	c.(1039-1041)TCC>TTC	p.S347F	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	347					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		CATATTTTTGGATCGCGTCCC	0.353													47	65					0	0	0.002852	0	0
KCND3	3752	broad.mit.edu	37	1	112318747	112318747	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:112318747C>T	uc001ebu.1	-	8	2400	c.1920G>A	c.(1918-1920)ACG>ACA	p.T640T	KCND3_uc001ebv.1_Silent_p.T621T	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	640	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		AAGGAATGTTCGTGTTGGGGC	0.597													45	59					0	0	0.003610	0	0
ST7L	54879	broad.mit.edu	37	1	113124694	113124694	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:113124694T>C	uc001ecd.2	-	9	1294	c.989A>G	c.(988-990)AAC>AGC	p.N330S	ST7L_uc009wgh.2_Intron|ST7L_uc001ecc.2_Missense_Mutation_p.N147S|ST7L_uc010owg.1_Missense_Mutation_p.N265S|ST7L_uc010owh.1_Intron|ST7L_uc001ece.2_Missense_Mutation_p.N330S|ST7L_uc001ecf.2_Missense_Mutation_p.N313S|ST7L_uc001ecg.2_RNA|ST7L_uc010owi.1_Missense_Mutation_p.N265S|ST7L_uc001ech.2_Missense_Mutation_p.N313S|ST7L_uc001eci.2_Missense_Mutation_p.N330S|ST7L_uc009wgi.1_RNA|ST7L_uc010owj.1_Missense_Mutation_p.N313S	NM_017744	NP_060214	Q8TDW4	ST7L_HUMAN	suppression of tumorigenicity 7-like isoform 1	330					negative regulation of cell growth	integral to membrane	binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCATGGATGTTCAACATGGT	0.348													39	56					0	0	0.003610	0	0
MAGI3	260425	broad.mit.edu	37	1	114184754	114184754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:114184754C>T	uc001edk.2	+	10	1763	c.1582C>T	c.(1582-1584)CCT>TCT	p.P528S	MAGI3_uc001edh.3_Missense_Mutation_p.P553S|MAGI3_uc001edi.3_Missense_Mutation_p.P528S|MAGI3_uc010owm.1_Missense_Mutation_p.P553S|MAGI3_uc001edj.2_Missense_Mutation_p.P249S	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	553					apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTGCATGAATCCTCAGGATTT	0.468													83	72					0	0	0.003610	0	0
PTPN22	26191	broad.mit.edu	37	1	114380911	114380911	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:114380911G>T	uc001eds.2	-	13	1241	c.1111C>A	c.(1111-1113)CCT>ACT	p.P371T	PTPN22_uc009wgq.2_Missense_Mutation_p.P316T|PTPN22_uc010owo.1_Missense_Mutation_p.P127T|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.P371T|PTPN22_uc009wgs.2_Missense_Mutation_p.P244T|PTPN22_uc001edu.2_Missense_Mutation_p.P371T	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	371					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATTTAGCAGGGTGCAAAACT	0.358													43	33					7.63091e-17	1.32449e-16	0.001706	1	0
PTPN22	26191	broad.mit.edu	37	1	114394690	114394690	+	Missense_Mutation	SNP	G	A	A	rs143665827		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:114394690G>A	uc001eds.2	-	10	917	c.787C>T	c.(787-789)CGG>TGG	p.R263W	PTPN22_uc009wgq.2_Intron|PTPN22_uc010owo.1_Missense_Mutation_p.R19W|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.R263W|PTPN22_uc009wgs.2_Missense_Mutation_p.R136W|PTPN22_uc001edu.2_Missense_Mutation_p.R263W	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	263	Tyrosine-protein phosphatase.				negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CGCATTTCCCGGATCAAACTG	0.348													13	27					0	0	0.003163	0	0
AMPD1	270	broad.mit.edu	37	1	115215893	115215893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:115215893C>T	uc001efe.1	-	16	2170	c.2086G>A	c.(2086-2088)GAG>AAG	p.E696K	DENND2C_uc001eez.2_5'Flank|AMPD1_uc001eff.1_Missense_Mutation_p.E692K	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	696					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TTTACTTTCTCCTATAAGAGA	0.418													29	43					0	0	0.002096	0	0
AMPD1	270	broad.mit.edu	37	1	115218274	115218274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:115218274C>T	uc001efe.1	-	12	1640	c.1556G>A	c.(1555-1557)AGT>AAT	p.S519N	AMPD1_uc001eff.1_Missense_Mutation_p.S515N	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	519					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CATGTGGCCACTGTGTTTGGA	0.478													43	89					0	0	0.003610	0	0
SYCP1	6847	broad.mit.edu	37	1	115453027	115453027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:115453027G>A	uc001efr.2	+	17	1539	c.1330G>A	c.(1330-1332)GAA>AAA	p.E444K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E444K|SYCP1_uc009wgw.2_Missense_Mutation_p.E444K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	444	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGAGAAAAGGAAACACTTTT	0.338													30	46					0	0	0.001512	0	0
TSPAN2	10100	broad.mit.edu	37	1	115600211	115600211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:115600211C>T	uc001eft.2	-	6	525	c.463G>A	c.(463-465)GAA>AAA	p.E155K		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	155	Extracellular (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		TCGGAGCTTTCTTTTCCACAG	0.502													90	165					0	0	0.003610	0	0
C1orf161	126868	broad.mit.edu	37	1	116666839	116666839	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:116666839G>A	uc001egc.1	+	4	607	c.342G>A	c.(340-342)CTG>CTA	p.L114L		NM_152367	NP_689580	Q8N8X9	MB213_HUMAN	hypothetical protein LOC126868	114											0	Lung SC(450;0.184)	all_cancers(81;0.00142)|all_lung(203;0.000139)|all_epithelial(167;0.000401)|Lung NSC(69;0.000705)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		AGCAGTGGCTGGAGGTGGAAC	0.607													18	28					0	0	0.001216	0	0
ATP1A1	476	broad.mit.edu	37	1	116932243	116932243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:116932243C>T	uc001ege.2	+	8	1276	c.937C>T	c.(937-939)CTT>TTT	p.L313F	ATP1A1_uc010owv.1_Missense_Mutation_p.L282F|ATP1A1_uc010oww.1_Missense_Mutation_p.L313F|ATP1A1_uc010owx.1_Missense_Mutation_p.L282F	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	313	Extracellular (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	TTCTCTCATCCTTGAGTACAC	0.512													30	26					0	0	0.001271	0	0
CD2	914	broad.mit.edu	37	1	117297170	117297170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:117297170C>T	uc001egu.3	+	1	85	c.56C>T	c.(55-57)TCC>TTC	p.S19F	CD2_uc010owz.1_Missense_Mutation_p.S19F|CD2_uc010oxa.1_Missense_Mutation_p.S19F	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	19					blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	AATGTTTCTTCCAAAGGTAAG	0.403													31	35					0	0	0.003271	0	0
CD101	9398	broad.mit.edu	37	1	117576494	117576494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:117576494C>T	uc010oxb.1	+	9	2895	c.2837C>T	c.(2836-2838)CCT>CTT	p.P946L	CD101_uc009whd.2_Missense_Mutation_p.P946L|CD101_uc010oxc.1_Missense_Mutation_p.P946L|CD101_uc010oxd.1_Missense_Mutation_p.P884L	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	946	Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CCCACGCTTCCTTCCAGGATC	0.463													27	35					0	0	0.002096	0	0
TRIM45	80263	broad.mit.edu	37	1	117663645	117663645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:117663645G>A	uc001egz.2	-	1	767	c.179C>T	c.(178-180)TCA>TTA	p.S60L	TRIM45_uc009whe.2_Missense_Mutation_p.S60L|TRIM45_uc001eha.2_Intron	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	60	RING-type.					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		GTCCACTACTGAGAAGGGCTC	0.557													30	35					0	0	0.002096	0	0
SPAG17	200162	broad.mit.edu	37	1	118535128	118535128	+	Silent	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:118535128T>G	uc001ehk.2	-	36	5390	c.5322A>C	c.(5320-5322)ATA>ATC	p.I1774I		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1774						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CCTCATTCTTTATGACCTCAT	0.478													38	48					0	0	0.002522	0	0
SPAG17	200162	broad.mit.edu	37	1	118539095	118539095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:118539095C>T	uc001ehk.2	-	34	5019	c.4951G>A	c.(4951-4953)GGA>AGA	p.G1651R		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1651						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		AGTTCCATTCCTGATCCATCA	0.338													37	65					0	0	0.002522	0	0
SPAG17	200162	broad.mit.edu	37	1	118609430	118609430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:118609430C>T	uc001ehk.2	-	18	2546	c.2478G>A	c.(2476-2478)ATG>ATA	p.M826I		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	826						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GTTGTCTATTCATTGGATTGT	0.333													34	45					0	0	0.003271	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056793	120056793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:120056793G>A	uc001ehv.1	+	4	792	c.647G>A	c.(646-648)GGA>GAA	p.G216E	HSD3B1_uc001ehw.2_Missense_Mutation_p.G218E	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	216					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	TCAAGTGTTGGAAAGTTCTCC	0.522													28	32					0	0	0.001786	0	0
HMGCS2	3158	broad.mit.edu	37	1	120301818	120301818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:120301818G>A	uc001eid.2	-	4	824	c.773C>T	c.(772-774)TCC>TTC	p.S258F	HMGCS2_uc010oxj.1_Missense_Mutation_p.S216F|HMGCS2_uc001eie.2_Missense_Mutation_p.S166F	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	258					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		GCACTGGATGGAAAGCTTCCC	0.468													180	257					0	0	0.003610	0	0
NBPF7	343505	broad.mit.edu	37	1	120379953	120379953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:120379953C>T	uc010oxk.1	-	6	1489	c.868G>A	c.(868-870)GGG>AGG	p.G290R		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	290	NBPF 2.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		GGCGCTTTCCCTTCCTCTTCC	0.443													150	166					0	0	0.003610	0	0
ADAM30	11085	broad.mit.edu	37	1	120437545	120437545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:120437545C>T	uc001eij.2	-	1	1569	c.1415G>A	c.(1414-1416)GGG>GAG	p.G472E		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	472	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		ACTTGAATTCCCGTCGCAGTA	0.473													176	239					0	0	0.003610	0	0
FCGR1B	2210	broad.mit.edu	37	1	120930274	120930274	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:120930274G>A	uc001eip.2	-	4	377	c.327C>T	c.(325-327)GTC>GTT	p.V109V	FCGR1B_uc001eiq.2_Silent_p.V17V|FCGR1B_uc010oxl.1_RNA|FCGR1B_uc009whr.2_Silent_p.V109V|FCGR1B_uc009whs.2_Silent_p.V110V	NM_001017986	NP_001017986	Q92637	FCGRB_HUMAN	Fc fragment of IgG, high affinity Ib, receptor	109	Extracellular (Potential).|Ig-like C2-type 2.				interferon-gamma-mediated signaling pathway	integral to membrane|plasma membrane	IgG binding|immunoglobulin receptor activity				0	all_neural(166;0.181)	all_lung(203;7.27e-05)|Lung NSC(69;0.000389)|all_epithelial(167;0.068)		Lung(183;0.0327)|LUSC - Lung squamous cell carcinoma(189;0.19)		CTCTGCTGGAGACCTGCAGTA	0.488													60	72					0	0	0.003610	0	0
LOC647121	647121	broad.mit.edu	37	1	121307573	121307573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:121307573G>A	uc009wht.1	+	2	300	c.271G>A	c.(271-273)GAA>AAA	p.E91K	LOC647121_uc001eiu.1_RNA					Homo sapiens cDNA FLJ46881 fis, clone UTERU3015647, moderately similar to Embigin precursor.												0						TGAGGGGAAAGAATTTGAGCA	0.308													16	36					0	0	0.001216	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767635	143767635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:143767635C>T	uc001ejt.2	-	1	247	c.214G>A	c.(214-216)GGC>AGC	p.G72S		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	72	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						TCACCGGTGCCATTAGGGTGT	0.468													42	156					0	0	0.002522	0	0
NBPF9	400818	broad.mit.edu	37	1	144825421	144825421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:144825421C>T	uc009wig.1	+	19	2223	c.2147C>T	c.(2146-2148)TCG>TTG	p.S716L	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.S641L|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.S517L|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.S376L	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	716	NBPF 5.					cytoplasm					0						AGATGGTATTCGACTCCTTCA	0.488													68	59					0	0	0.003610	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144877221	144877221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:144877221C>T	uc001elw.3	-	28	4757	c.4466G>A	c.(4465-4467)CGG>CAG	p.R1489Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R1445Q|PDE4DIP_uc001elv.3_Missense_Mutation_p.R496Q	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1489					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TATTTTTTGCCGTAGGTAAGA	0.418			T	PDGFRB	MPD								9	85					0	0	0.000673	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144882665	144882665	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:144882665G>A	uc001elw.3	-	24	3645	c.3354C>T	c.(3352-3354)CTC>CTT	p.L1118L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001elv.3_Silent_p.L125L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1118	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GTTCTTTGAGGAGGTTGATGA	0.453			T	PDGFRB	MPD								72	171					0	0	0.003610	0	0
PDE4DIP	9659	broad.mit.edu	37	1	145015921	145015921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:145015921G>A	uc001elx.3	-	3	502	c.167C>T	c.(166-168)TCC>TTC	p.S56F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_Missense_Mutation_p.S56F|PDE4DIP_uc001elo.2_Missense_Mutation_p.S127F|PDE4DIP_uc001emh.2_Missense_Mutation_p.S127F|uc001emj.2_Intron	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:Variant_position_missing_in_Q5VU43_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGCTCTCAAGGAATATGTCTG	0.448			T	PDGFRB	MPD								67	451					0	0	0.003610	0	0
HFE2	148738	broad.mit.edu	37	1	145416931	145416931	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:145416931C>T	uc001eni.2	+	4	1601	c.1276C>T	c.(1276-1278)CAG>TAG	p.Q426*	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Nonsense_Mutation_p.Q200*|HFE2_uc001enk.2_Nonsense_Mutation_p.Q313*|HFE2_uc001enl.2_Nonsense_Mutation_p.Q200*	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	426					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCTTTGCATTCAGTAAGGGGA	0.463													44	67					0	0	0.003610	0	0
PIAS3	10401	broad.mit.edu	37	1	145584814	145584814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:145584814C>T	uc001eoc.1	+	13	1689	c.1598C>T	c.(1597-1599)TCA>TTA	p.S533L	NBPF10_uc001emp.3_Intron|PIAS3_uc001eod.1_Missense_Mutation_p.S202L	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	533					positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GATTTATTTTCATTTCTTCAG	0.438													13	56					0	0	0.002450	0	0
NBPF10	100132406	broad.mit.edu	37	1	146399623	146399625	+	Missense_Mutation	TNP	CCC	AAA	AAA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:146399623_146399625CCC>AAA	uc001emp.3	+	14	2573_2575	c.1375_1377CCC>AAA	c.(1375-1377)CCC>AAA	p.P459K	uc010ozk.1_5'UTR	NM_017940	NP_060410	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC55672	188											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ATCATCTGCCCCCAGGTAACACT	0.424													11	353					0	0	0.004672	0	0
FMO5	2330	broad.mit.edu	37	1	146658672	146658672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:146658672G>A	uc001epi.2	-	9	1798	c.1409C>T	c.(1408-1410)CCA>CTA	p.P470L	FMO5_uc001eph.3_Intron|FMO5_uc001epj.2_3'UTR	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	470						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					ATAGTGGATTGGAGTGCAGGG	0.532													22	25					0	0	0.002299	0	0
BCL9	607	broad.mit.edu	37	1	147086262	147086262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:147086262C>T	uc001epq.2	+	6	1147	c.407C>T	c.(406-408)TCC>TTC	p.S136F	BCL9_uc010ozr.1_Missense_Mutation_p.S62F	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	136					Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					TCCCAGGATTCCCAGCACACA	0.463			T	IGH@|IGL@	B-ALL								29	24					0	0	0.001786	0	0
BCL9	607	broad.mit.edu	37	1	147087640	147087640	+	Missense_Mutation	SNP	A	G	G	rs139276872		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:147087640A>G	uc001epq.2	+	7	1338	c.598A>G	c.(598-600)ATC>GTC	p.I200V	BCL9_uc010ozr.1_Missense_Mutation_p.I126V	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	200					Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					GGTTGAAACTATCGTCTCTTT	0.408			T	IGH@|IGL@	B-ALL								62	52					0	0	0.003610	0	0
BCL9	607	broad.mit.edu	37	1	147091892	147091892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:147091892C>T	uc001epq.2	+	8	2671	c.1931C>T	c.(1930-1932)CCC>CTC	p.P644L	BCL9_uc010ozr.1_Missense_Mutation_p.P570L	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	644	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CTGGGTCTCCCCCCAGGGATG	0.572			T	IGH@|IGL@	B-ALL								20	26					0	0	0.001523	0	0
Unknown	0	broad.mit.edu	37	1	148891662	148891662	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:148891662G>A	uc009wkv.1	+	9		c.964G>A								Homo sapiens cDNA, FLJ17483.																		TTATAAATCAGAATAGCGTGG	0.398													15	89					0	0	0.003163	0	0
SV2A	9900	broad.mit.edu	37	1	149879641	149879641	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:149879641G>A	uc001etg.2	-	9	1988	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	SV2A_uc009wlk.2_5'Flank|SV2A_uc001eth.2_Silent_p.F499F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	499	Extracellular (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TCTCCAACGTGAAGTTAAAAG	0.512													38	82					0	0	0.001287	0	0
MTMR11	10903	broad.mit.edu	37	1	149901688	149901688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:149901688G>A	uc001etl.3	-	16	2019	c.1768C>T	c.(1768-1770)CGT>TGT	p.R590C	SF3B4_uc001etj.1_5'Flank|SF3B4_uc001etk.1_5'Flank|SF3B4_uc009wll.1_5'Flank|MTMR11_uc001etm.1_Missense_Mutation_p.R518C	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	590	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			GGGAGCCAACGAGAAGAGACT	0.592													46	23					0	0	0.003610	0	0
RPRD2	23248	broad.mit.edu	37	1	150445749	150445749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:150445749C>T	uc009wlr.2	+	11	4526	c.4325C>T	c.(4324-4326)CCT>CTT	p.P1442L	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Missense_Mutation_p.P1416L	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1442	Pro-rich.						protein binding			ovary(1)	1						CCCAGGCCACCTTTTGCTAGG	0.512													30	64					0	0	0.002096	0	0
MCL1	4170	broad.mit.edu	37	1	150551546	150551546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:150551546G>A	uc001euz.2	-	1	591	c.461C>T	c.(460-462)ACC>ATC	p.T154I	MCL1_uc010pch.1_Missense_Mutation_p.T44I|MCL1_uc001eva.2_Missense_Mutation_p.T154I	NM_021960	NP_068779	Q07820	MCL1_HUMAN	myeloid cell leukemia sequence 1 isoform 1	154	PEST-like.				anti-apoptosis|apoptosis|cell fate determination|cellular homeostasis|multicellular organismal development|response to cytokine stimulus	integral to membrane|mitochondrial outer membrane|nucleoplasm	BH3 domain binding|protein binding|protein channel activity|protein heterodimerization activity				0	all_cancers(9;1.69e-53)|all_epithelial(9;1.95e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GTCCGTACTGGTGTTATTACC	0.642													31	26					0	0	0.001786	0	0
CTSS	1520	broad.mit.edu	37	1	150724269	150724269	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:150724269G>A	uc001evn.2	-	5	748	c.615C>T	c.(613-615)CCC>CCT	p.P205P	CTSS_uc010pcj.1_Silent_p.P155P|CTSS_uc001evo.1_Silent_p.P205P	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	205					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			TGGCTTTGTAGGGATAGGAAG	0.473													38	80					0	0	0.005524	0	0
ARNT	405	broad.mit.edu	37	1	150795777	150795777	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:150795777G>A	uc001evr.1	-	14	1430	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	ARNT_uc001evs.1_Silent_p.F414F|ARNT_uc009wmb.1_Silent_p.F415F|ARNT_uc009wmc.1_Silent_p.F429F|ARNT_uc009wmd.1_Silent_p.F414F|ARNT_uc009wme.1_Intron|ARNT_uc010pcl.1_Silent_p.F413F	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	429	PAC.				positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity			skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			TCTTAGACCGGAACCGGAACA	0.398			T	ETV6	AML								65	47					0	0	0.003610	0	0
GABPB2	126626	broad.mit.edu	37	1	151062912	151062912	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:151062912C>T	uc001ewr.2	+	3	470	c.139C>T	c.(139-141)CAA>TAA	p.Q47*	GABPB2_uc010pcp.1_Nonsense_Mutation_p.Q63*|GABPB2_uc001ews.2_Intron|GABPB2_uc001ewt.2_5'Flank	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	47	ANK 2.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		CCTTGCAGCTCAATATGGTCA	0.368													26	23					0	0	0.003330	0	0
ZNF687	57592	broad.mit.edu	37	1	151259392	151259392	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:151259392A>C	uc001exq.2	+	2	723	c.625A>C	c.(625-627)ATG>CTG	p.M209L	ZNF687_uc001exp.1_Missense_Mutation_p.M218L|ZNF687_uc009wmo.2_Missense_Mutation_p.M209L|ZNF687_uc009wmp.2_Missense_Mutation_p.M209L	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	209	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGGCCCAGGCATGCAGCCACC	0.647													17	45					0	0	0.001216	0	0
TCHHL1	126637	broad.mit.edu	37	1	152057979	152057979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152057979C>T	uc001ezo.1	-	3	2244	c.2179G>A	c.(2179-2181)GAC>AAC	p.D727N		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	727							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GCTGAATTGTCCTCATCTAGA	0.448													83	72					0	0	0.003610	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058080	152058080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152058080C>T	uc001ezo.1	-	3	2143	c.2078G>A	c.(2077-2079)GGA>GAA	p.G693E		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	693							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TCTGCTATCTCCCTTTCCAGG	0.458													56	125					0	0	0.003610	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058291	152058291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152058291C>T	uc001ezo.1	-	3	1932	c.1867G>A	c.(1867-1869)GAG>AAG	p.E623K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	623							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TCCTGGTCCTCTGTGAGCTGT	0.557													27	59					0	0	0.005443	0	0
TCHH	7062	broad.mit.edu	37	1	152082565	152082565	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152082565A>C	uc001ezp.2	-	2	3128	c.3128T>G	c.(3127-3129)CTC>CGC	p.L1043R	TCHH_uc009wne.1_Missense_Mutation_p.L1043R	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1043	10 X 30 AA tandem repeats.|4-5.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCGCTCCTGGAGTCTTCTTTT	0.254													3	92					0	0	0.001168	0	0
RPTN	126638	broad.mit.edu	37	1	152127612	152127612	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152127612T>C	uc001ezs.1	-	3	2028	c.1963A>G	c.(1963-1965)AGC>GGC	p.S655G		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	655	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGATGTTGGCTATCCTCTTCA	0.512													46	45					0	0	0.003610	0	0
RPTN	126638	broad.mit.edu	37	1	152129259	152129259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152129259C>T	uc001ezs.1	-	3	381	c.316G>A	c.(316-318)GAA>AAA	p.E106K		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	106	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGTGCTCCTTCCTGCCCCCTT	0.517													59	155					0	0	0.003610	0	0
HRNR	388697	broad.mit.edu	37	1	152188315	152188315	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152188315G>A	uc001ezt.1	-	3	5866	c.5790C>T	c.(5788-5790)TCC>TCT	p.S1930S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1930	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AAGACTGACGGGAGCCAGACC	0.577													41	584					0	0	0.003610	0	0
HRNR	388697	broad.mit.edu	37	1	152188365	152188365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152188365C>T	uc001ezt.1	-	3	5816	c.5740G>A	c.(5740-5742)GGA>AGA	p.G1914R		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1914	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGCTAGATCCGTGTTGTTCA	0.562													68	779					0	0	0.003610	0	0
HRNR	388697	broad.mit.edu	37	1	152193735	152193735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152193735C>T	uc001ezt.1	-	3	446	c.370G>A	c.(370-372)GAA>AAA	p.E124K		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	124	1.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AAAGAGGATTCTTGCCGTTTG	0.433													36	100					0	0	0.004878	0	0
HRNR	388697	broad.mit.edu	37	1	152195619	152195619	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152195619C>T	uc001ezt.1	-	2	187	c.111G>A	c.(109-111)CTG>CTA	p.L37L		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	37	EF-hand 1.|S-100-like.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTCATTTTCCAGAAGTTCTT	0.428													28	87					0	0	0.001271	0	0
FLG	2312	broad.mit.edu	37	1	152275979	152275979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152275979C>T	uc001ezu.1	-	3	11419	c.11383G>A	c.(11383-11385)GGA>AGA	p.G3795R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3795	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCAGACCTTCCCTGGGATGTG	0.577									Ichthyosis				95	239					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152279872	152279872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152279872G>A	uc001ezu.1	-	3	7526	c.7490C>T	c.(7489-7491)TCC>TTC	p.S2497F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2497	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTTCCCTGGGATGTGGTGTG	0.557									Ichthyosis				88	177					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152280545	152280545	+	Missense_Mutation	SNP	C	T	T	rs142969864		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152280545C>T	uc001ezu.1	-	3	6853	c.6817G>A	c.(6817-6819)GAG>AAG	p.E2273K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2273	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTGACTGCTCCTGAGCAGAT	0.562									Ichthyosis				71	154					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152281990	152281990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152281990C>T	uc001ezu.1	-	3	5408	c.5372G>A	c.(5371-5373)AGA>AAA	p.R1791K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1791	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGCGGGATCTTTGTCTTCC	0.602									Ichthyosis				126	133					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152285377	152285377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152285377G>A	uc001ezu.1	-	3	2021	c.1985C>T	c.(1984-1986)TCC>TTC	p.S662F	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	662	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCGTGATGGGACCTGGGGTG	0.547									Ichthyosis				82	176					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152285609	152285609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152285609C>T	uc001ezu.1	-	3	1789	c.1753G>A	c.(1753-1755)GGG>AGG	p.G585R	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	585	Filaggrin 3.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACGTGACCCTGAGTGCCTG	0.567									Ichthyosis				115	139					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152323669	152323669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152323669C>T	uc001ezw.3	-	3	6666	c.6593G>A	c.(6592-6594)GGA>GAA	p.G2198E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2198							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGAGTGTGTCCTGAATGTGT	0.517													91	89					0	0	0.003610	0	0
CRNN	49860	broad.mit.edu	37	1	152382811	152382811	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152382811C>T	uc001ezx.2	-	3	821	c.747G>A	c.(745-747)CAG>CAA	p.Q249Q		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	249	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCTTCCTGTCTGGTGGCTGC	0.597													134	108					0	0	0.003610	0	0
LCE3D	84648	broad.mit.edu	37	1	152552401	152552401	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152552401C>G	uc001fab.2	-	2	69	c.12G>C	c.(10-12)CAG>CAC	p.Q4H		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	4					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		GCTGGTTCTGCTGGCAGGACA	0.547													26	29					0	0	0.001271	0	0
LCE1F	353137	broad.mit.edu	37	1	152748928	152748928	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152748928G>A	uc010pdv.1	+	1	81	c.81G>A	c.(79-81)CCG>CCA	p.P27P		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	27	Pro-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gccccacaccgaagtgccccc	0.393													22	17					0	0	0.003330	0	0
LCE1E	353135	broad.mit.edu	37	1	152759961	152759961	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152759961C>T	uc001fan.2	+	2	239	c.186C>T	c.(184-186)TCC>TCT	p.S62S		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	62	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTGTGGCTCCAGCTCTGGGG	0.662													23	41					0	0	0.005443	0	0
IVL	3713	broad.mit.edu	37	1	152883961	152883961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152883961G>A	uc001fau.2	+	2	1734	c.1688G>A	c.(1687-1689)GGA>GAA	p.G563E		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	563					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCCACAAAGGGAGAAGTATTG	0.453													30	26					0	0	0.002836	0	0
SPRR4	163778	broad.mit.edu	37	1	152944429	152944429	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152944429G>A	uc001fav.1	+	2	126	c.63G>A	c.(61-63)CAG>CAA	p.Q21Q		NM_173080	NP_775103	Q96PI1	SPRR4_HUMAN	small proline-rich protein 4	21	Gln-rich.				keratinization|peptide cross-linking	cell cortex					0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCCAGCAGCAGCAAGTGAAGC	0.483													25	35					0	0	0.004656	0	0
SPRR4	163778	broad.mit.edu	37	1	152944435	152944435	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152944435G>A	uc001fav.1	+	2	132	c.69G>A	c.(67-69)GTG>GTA	p.V23V		NM_173080	NP_775103	Q96PI1	SPRR4_HUMAN	small proline-rich protein 4	23	Gln-rich.				keratinization|peptide cross-linking	cell cortex					0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCAGCAAGTGAAGCAGCCTT	0.478													23	36					0	0	0.003954	0	0
SPRR3	6707	broad.mit.edu	37	1	152975776	152975776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:152975776C>T	uc001fax.3	+	3	430	c.280C>T	c.(280-282)CCT>TCT	p.P94S	SPRR3_uc001faz.3_Missense_Mutation_p.P94S|SPRR3_uc001fay.2_Missense_Mutation_p.P86S	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	94	7.|14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TACCAAGGTCCCTGAGCCAGG	0.592													22	20					0	0	0.003330	0	0
S100A7A	338324	broad.mit.edu	37	1	153391710	153391710	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:153391710C>T	uc001fbt.1	+	3	288	c.231C>T	c.(229-231)TCC>TCT	p.S77S		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	77	EF-hand 2.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGTTTCTGTCCTTGCTGGGAG	0.517													25	26					0	0	0.004656	0	0
NPR1	4881	broad.mit.edu	37	1	153665843	153665843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:153665843C>T	uc001fcs.3	+	22	3560	c.3139C>T	c.(3139-3141)CGG>TGG	p.R1047W	NPR1_uc010pdz.1_Missense_Mutation_p.R793W|NPR1_uc010pea.1_Missense_Mutation_p.R525W	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	1047	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	AGGCAAGGTTCGGACCTACTG	0.597													42	40					0	0	0.003610	0	0
SHE	126669	broad.mit.edu	37	1	154459121	154459121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:154459121C>T	uc001ffb.2	-	4	1150	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	355										breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			CTCACTGTCTCCTCCCTGAAG	0.567													47	46					0	0	0.003610	0	0
ADAR	103	broad.mit.edu	37	1	154570414	154570414	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:154570414G>A	uc001ffh.2	-	4	2024	c.1824C>T	c.(1822-1824)TCC>TCT	p.S608S	ADAR_uc001ffj.2_Silent_p.S608S|ADAR_uc001ffi.2_Silent_p.S608S|ADAR_uc001ffk.2_Silent_p.S313S	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	608					adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		CAGAAAAGAAGGATGTGGCTG	0.502													16	24					0	0	0.004007	0	0
KCNN3	3782	broad.mit.edu	37	1	154680613	154680613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:154680613C>T	uc001ffp.2	-	8	2349	c.2035G>A	c.(2035-2037)GAC>AAC	p.D679N	KCNN3_uc001ffo.2_Missense_Mutation_p.D374N	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	684						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			CGCAGGGTGTCGGCGATGAGC	0.637													49	65					0	0	0.003610	0	0
FLAD1	80308	broad.mit.edu	37	1	154961257	154961257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:154961257C>T	uc001fgf.1	+	2	1403	c.1049C>T	c.(1048-1050)TCG>TTG	p.S350L	FLAD1_uc001fgc.2_Missense_Mutation_p.S251L|FLAD1_uc001fgd.1_Missense_Mutation_p.S350L|FLAD1_uc001fge.1_Missense_Mutation_p.S253L|FLAD1_uc001fgg.1_Missense_Mutation_p.S253L|FLAD1_uc001fgh.1_Missense_Mutation_p.S83L	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	350					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CCCCAGGGATCGCTGGTCCCC	0.567													30	24					0	0	0.003755	0	0
DCST2	127579	broad.mit.edu	37	1	155005603	155005603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:155005603C>T	uc001fgm.2	-	2	486	c.406G>A	c.(406-408)GAA>AAA	p.E136K	DCST2_uc009wpb.2_RNA|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	136	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGTAGCACTTCGGCGGTCTGG	0.622													4	8					0	0	0.000248	0	0
DCST2	127579	broad.mit.edu	37	1	155005627	155005627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:155005627C>T	uc001fgm.2	-	2	462	c.382G>A	c.(382-384)GAG>AAG	p.E128K	DCST2_uc009wpb.2_RNA|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	128	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			AGGGCCAGCTCTGCCCCACAG	0.612													5	6					0	0	0.000602	0	0
DCST1	149095	broad.mit.edu	37	1	155013989	155013989	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:155013989G>A	uc001fgn.1	+	7	744	c.648G>A	c.(646-648)GGG>GGA	p.G216G	DCST1_uc010per.1_Silent_p.G241G|DCST1_uc010pes.1_Silent_p.G191G	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	216	Extracellular (Potential).					integral to membrane	zinc ion binding			ovary(1)|skin(1)	2	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			TGGACTCAGGGGAGACAGCCC	0.592													18	36					0	0	0.000743	0	0
SCAMP3	10067	broad.mit.edu	37	1	155227153	155227153	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:155227153G>A	uc001fjs.2	-	7	955	c.702C>T	c.(700-702)TTC>TTT	p.F234F	RAG1AP1_uc010pey.1_Intron|FAM189B_uc001fjm.2_5'Flank|FAM189B_uc001fjn.2_5'Flank|FAM189B_uc001fjo.2_5'Flank|FAM189B_uc001fjp.2_5'Flank|FAM189B_uc001fjq.1_5'Flank|SCAMP3_uc001fjr.2_Silent_p.F81F|SCAMP3_uc001fju.2_Silent_p.F220F|SCAMP3_uc001fjv.2_Silent_p.F234F|SCAMP3_uc001fjt.2_Silent_p.F208F	NM_005698	NP_005689	O14828	SCAM3_HUMAN	secretory carrier membrane protein 3 isoform 1	234					post-Golgi vesicle-mediated transport|protein transport	integral to membrane				ovary(3)	3	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			AGAAGAAAACGAAGAAATTGA	0.488													11	17					0	0	0.000978	0	0
ASH1L	55870	broad.mit.edu	37	1	155448429	155448429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:155448429G>A	uc009wqq.2	-	3	4712	c.4232C>T	c.(4231-4233)CCT>CTT	p.P1411L	ASH1L_uc001fkt.2_Missense_Mutation_p.P1411L|ASH1L_uc009wqr.1_Missense_Mutation_p.P1411L	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1411	Pro-rich.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AGATGGAGGAGGTGGATAAAG	0.448													47	31					0	0	0.003610	0	0
ASH1L	55870	broad.mit.edu	37	1	155491261	155491262	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:155491261_155491262CC>TT	uc009wqq.2	-	2	529_530	c.49_50GG>AA	c.(49-51)GGT>AAT	p.G17N	ASH1L_uc001fkt.2_Missense_Mutation_p.G17N|ASH1L_uc009wqr.1_Missense_Mutation_p.G17N	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	17					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TCTTGAAAAACCTTCGGAATCA	0.411													89	88					0	0	0.004672	0	0
RXFP4	339403	broad.mit.edu	37	1	155912019	155912019	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:155912019G>A	uc010pgs.1	+	1	540	c.519G>A	c.(517-519)ACG>ACA	p.T173T		NM_181885	NP_871001	Q8TDU9	RL3R2_HUMAN	relaxin 3 receptor 2	173	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	angiotensin type II receptor activity				0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCCTGGTGACGGTGCCCACAG	0.682													46	31					0	0	0.003610	0	0
MEX3A	92312	broad.mit.edu	37	1	156047386	156047386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156047386C>T	uc001fnd.3	-	2	542	c.542G>A	c.(541-543)GGG>GAG	p.G181E		NM_001093725	NP_001087194	A1L020	MEX3A_HUMAN	MEX3A protein	181	KH 1.					cytoplasmic mRNA processing body|nucleus	RNA binding|zinc ion binding				0	Hepatocellular(266;0.158)|all_neural(408;0.195)					CTCCCGTCGCCCTGTCACCAT	0.612													19	8					0	0	0.000743	0	0
SMG5	23381	broad.mit.edu	37	1	156247024	156247024	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156247024G>A	uc001foc.3	-	4	455	c.306C>T	c.(304-306)CAC>CAT	p.H102H		NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	102					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					TGCTCCGGCTGTGGATGTGCT	0.527													18	9					0	0	0.001216	0	0
C1orf61	10485	broad.mit.edu	37	1	156374372	156374372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156374372G>A	uc001fou.1	-	7	562	c.445C>T	c.(445-447)CAT>TAT	p.H149Y	C1orf61_uc001fot.1_3'UTR|C1orf61_uc001fov.1_RNA|C1orf61_uc001fow.1_RNA|C1orf61_uc001fox.1_RNA	NM_006365	NP_006356	Q13536	CROC4_HUMAN	transcriptional activator of the c-fos promoter	149						nucleus				skin(1)	1	Hepatocellular(266;0.158)					CCAACCAGATGAAGTACATTC	0.328													19	42					0	0	0.001216	0	0
IQGAP3	128239	broad.mit.edu	37	1	156542304	156542304	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156542304C>A	uc001fpf.2	-	1	93	c.18G>T	c.(16-18)GCG>GCT	p.A6A	IQGAP3_uc009wsb.1_5'UTR	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	6					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGCCTGGGCCCGCTGCTCTCC	0.672													6	188					0.00448238	0.00768924	0.004482	1	0
NES	10763	broad.mit.edu	37	1	156642368	156642368	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156642368G>T	uc001fpq.2	-	4	1745	c.1612C>A	c.(1612-1614)CAG>AAG	p.Q538K		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	538	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AAAGGAACCTGGGAGTCCTGG	0.468													7	102					0.00307968	0.00528618	0.003080	1	0
ISG20L2	81875	broad.mit.edu	37	1	156697010	156697010	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156697010G>A	uc001fps.1	-	1	696	c.435C>T	c.(433-435)TCC>TCT	p.S145S	ISG20L2_uc001fpt.1_Silent_p.S145S|C1orf66_uc001fpu.2_5'Flank|C1orf66_uc001fpv.2_5'Flank	NM_030980	NP_112242	Q9H9L3	I20L2_HUMAN	interferon stimulated exonuclease gene	145					ribosome biogenesis	nucleolus	exonuclease activity|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCTTTTTAGAGGATTTCTTCT	0.493											OREG0013885	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	98	67					0	0	0.003610	0	0
NTRK1	4914	broad.mit.edu	37	1	156851296	156851296	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156851296C>T	uc001fqh.1	+	17	2309	c.2253C>T	c.(2251-2253)GCC>GCT	p.A751A	NTRK1_uc001fqf.1_Silent_p.A715A|NTRK1_uc009wsi.1_Silent_p.A450A|NTRK1_uc001fqi.1_Silent_p.A745A|NTRK1_uc009wsk.1_Silent_p.A748A	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	751	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GGCCACGTGCCTGCCCACCAG	0.532			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			8	3					0	0	0.004482	0	0
PEAR1	375033	broad.mit.edu	37	1	156880483	156880483	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156880483G>A	uc001fqj.1	+	15	2015	c.1899G>A	c.(1897-1899)TCG>TCA	p.S633S	PEAR1_uc001fqk.1_Silent_p.S258S	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	633	EGF-like 8.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCCACCCCTCGAACGGGACCT	0.617													11	33					0	0	0.001368	0	0
PEAR1	375033	broad.mit.edu	37	1	156883066	156883066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156883066C>T	uc001fqj.1	+	19	2619	c.2503C>T	c.(2503-2505)CCT>TCT	p.P835S	PEAR1_uc001fqk.1_Missense_Mutation_p.P460S	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	835	Pro-rich.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCCCCACCCCCTAACAAGGT	0.607													18	52					0	0	0.001216	0	0
C1orf92	149499	broad.mit.edu	37	1	156902313	156902313	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156902313G>A	uc001fqm.2	+	14	1711	c.1539G>A	c.(1537-1539)GTG>GTA	p.V513V	C1orf92_uc001fql.2_Silent_p.V299V	NM_144702	NP_653303	Q8N4P6	LRC71_HUMAN	hypothetical protein LOC149499	513											0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					AGGGTCCAGTGGGGCTGCTGT	0.597													20	50					0	0	0.001216	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156948061	156948062	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:156948061_156948062GG>AA	uc001fqo.2	-	6	1484_1485	c.444_445CC>TT	c.(442-447)ATCCCC>ATTTCC	p.P149S	ARHGEF11_uc001fqn.2_Missense_Mutation_p.P149S	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	149					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGTGGTGAGGGGATCACTGACG	0.579													17	37					0	0	0.004672	0	0
FCRL5	83416	broad.mit.edu	37	1	157490960	157490960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:157490960G>A	uc001fqu.2	-	11	2520	c.2362C>T	c.(2362-2364)CAT>TAT	p.H788Y	FCRL5_uc009wsm.2_Missense_Mutation_p.H788Y	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	788	Extracellular (Potential).|Ig-like C2-type 8.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACATCCTCATGAAAAAACCGG	0.592													20	54					0	0	0.001882	0	0
FCRL4	83417	broad.mit.edu	37	1	157545358	157545358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:157545358C>T	uc001fqw.2	-	12	1640	c.1504G>A	c.(1504-1506)GAT>AAT	p.D502N	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	502	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GCTGAGTTATCTGGGTGTTGT	0.438													12	41					0	0	0.004990	0	0
FCRL3	115352	broad.mit.edu	37	1	157660298	157660298	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:157660298G>A	uc001frb.2	-	9	1729	c.1437C>T	c.(1435-1437)ACC>ACT	p.T479T	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.T479T|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Silent_p.T205T|FCRL3_uc001frc.1_Silent_p.T479T	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	479	Ig-like C2-type 6.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					GAGCCCTGAGGGTGAGGACGG	0.522													39	27					0	0	0.003610	0	0
FCRL3	115352	broad.mit.edu	37	1	157668387	157668387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:157668387G>A	uc001frb.2	-	4	377	c.85C>T	c.(85-87)CCT>TCT	p.P29S	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P29S|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'Flank|FCRL3_uc001frc.1_Missense_Mutation_p.P29S	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	29	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					GACCATGGAGGATTGAGGAGA	0.507													36	32					0	0	0.004878	0	0
FCRL1	115350	broad.mit.edu	37	1	157772449	157772449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:157772449G>A	uc001frg.2	-	4	438	c.325C>T	c.(325-327)CCT>TCT	p.P109S	FCRL1_uc001frf.2_5'Flank|FCRL1_uc001frh.2_Missense_Mutation_p.P109S|FCRL1_uc001fri.2_Missense_Mutation_p.P109S|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	109	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TCAGCGACAGGGACCCCTGTG	0.537													5	14					0	0	0.000602	0	0
CD5L	922	broad.mit.edu	37	1	157804520	157804520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:157804520G>A	uc001frk.3	-	4	538	c.395C>T	c.(394-396)TCC>TTC	p.S132F		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	132					apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TGGGACTGGGGAGAAAGAGCT	0.567													18	52					0	0	0.000958	0	0
CD5L	922	broad.mit.edu	37	1	157805786	157805787	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:157805786_157805787CC>TT	uc001frk.3	-	3	357_358	c.214_215GG>AA	c.(214-216)GGA>AAA	p.G72K		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	72	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ACTAGGGGTTCCGCTGGCAGCT	0.545													91	86					0	0	0.004672	0	0
CD1C	911	broad.mit.edu	37	1	158262655	158262655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158262655C>T	uc001fru.2	+	4	1172	c.880C>T	c.(880-882)CTC>TTC	p.L294F	CD1C_uc001frv.2_Missense_Mutation_p.L97F	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	294	Extracellular (Potential).|Ig-like.				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GGACATCATCCTCTACTGGGG	0.532													15	25					0	0	0.000743	0	0
OR10T2	128360	broad.mit.edu	37	1	158368795	158368795	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158368795G>A	uc010pih.1	-	1	462	c.462C>T	c.(460-462)TTC>TTT	p.F154F		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AAGCAATAAAGAAACCTGTGG	0.453													45	34					0	0	0.003214	0	0
OR10K2	391107	broad.mit.edu	37	1	158389972	158389972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158389972G>A	uc010pii.1	-	1	685	c.685C>T	c.(685-687)CCT>TCT	p.P229S		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AGTGTGGAAGGAAACTGAAGT	0.448													33	29					0	0	0.004289	0	0
OR10R2	343406	broad.mit.edu	37	1	158450022	158450022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158450022C>T	uc010pik.1	+	1	355	c.355C>T	c.(355-357)CTT>TTT	p.L119F	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	119	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					CTGTTGTGCTCTTCAAATGTT	0.443													159	126					0	0	0.003610	0	0
OR6Y1	391112	broad.mit.edu	37	1	158516955	158516955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158516955C>T	uc010pil.1	-	1	941	c.941G>A	c.(940-942)GGA>GAA	p.G314E		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GGGCCCACTTCCTCTGCAATG	0.458													23	61					0	0	0.003330	0	0
OR10X1	128367	broad.mit.edu	37	1	158548772	158548772	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158548772C>T	uc010pin.1	-	1	918	c.918G>A	c.(916-918)AGG>AGA	p.R306R		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TGTCCTTATTCCTCAGGCTGA	0.418													64	61					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158615042	158615042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158615042C>T	uc001fst.1	-	29	4329	c.4130G>A	c.(4129-4131)AGA>AAA	p.R1377K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1377	Spectrin 13.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CAAATCATCTCTCTCTAGCTT	0.463													78	69					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158650377	158650377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158650377G>A	uc001fst.1	-	5	873	c.674C>T	c.(673-675)GCC>GTC	p.A225V		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	225	Spectrin 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCTCACCTCGGCACACTCATT	0.448													53	122					0	0	0.003610	0	0
OR6K3	391114	broad.mit.edu	37	1	158687789	158687789	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158687789G>A	uc010pip.1	-	1	165	c.165C>T	c.(163-165)ATC>ATT	p.I55I		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	55	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AGTTATCAATGATAATAAAAG	0.363													54	134					0	0	0.003610	0	0
OR6K6	128371	broad.mit.edu	37	1	158725430	158725430	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158725430C>T	uc001fsw.1	+	1	825	c.825C>T	c.(823-825)TTC>TTT	p.F275F		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	275	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					TTGCTGTGTTCTTGCTATTTT	0.448													26	52					0	0	0.003954	0	0
OR6K6	128371	broad.mit.edu	37	1	158725497	158725497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158725497G>A	uc001fsw.1	+	1	892	c.892G>A	c.(892-894)GAC>AAC	p.D298N		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	298	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					AGTGTTTTGGGACACAGCAAT	0.443													34	35					0	0	0.002836	0	0
MNDA	4332	broad.mit.edu	37	1	158813902	158813902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:158813902C>T	uc001fsz.1	+	4	760	c.560C>T	c.(559-561)TCG>TTG	p.S187L		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	187					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					TCCAACACTTCGTTTACTCCG	0.493													36	74					0	0	0.001485	0	0
CADM3	57863	broad.mit.edu	37	1	159170642	159170642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:159170642C>T	uc001ftl.2	+	9	1269	c.1127C>T	c.(1126-1128)GCG>GTG	p.A376V	CADM3_uc001ftk.2_Missense_Mutation_p.A410V|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	376	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					GCTCCAGACGCGGACACGGCC	0.582													30	56					0	0	0.004289	0	0
DARC	2532	broad.mit.edu	37	1	159175620	159175620	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:159175620C>T	uc001fto.2	+	2	631	c.391C>T	c.(391-393)CTG>TTG	p.L131L	DARC_uc001ftp.3_Silent_p.L133L	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	131	Helical; Name=3; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					CCTGTGTAGCCTGGGCTACTG	0.642													32	24					0	0	0.002445	0	0
OR10J3	441911	broad.mit.edu	37	1	159283647	159283647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:159283647G>A	uc010piu.1	-	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.S268F(1)		ovary(2)	2	all_hematologic(112;0.0429)					CTGTCCCAGGGAACTCTGGGA	0.532													28	66					0	0	0.001061	0	0
OR10J1	26476	broad.mit.edu	37	1	159410223	159410223	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:159410223C>T	uc010piv.1	+	1	675	c.675C>T	c.(673-675)TTC>TTT	p.F225F	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	225	Helical; Name=5; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GTCTGGTTTTCATTTCTTATG	0.463													51	76					0	0	0.003610	0	0
OR10J5	127385	broad.mit.edu	37	1	159505008	159505008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:159505008C>T	uc010piw.1	-	1	790	c.790G>A	c.(790-792)GAA>AAA	p.E264K		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					ATTGAACTTTCTGACTTCGGC	0.488													31	31					0	0	0.002445	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799843	159799843	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:159799843C>T	uc001fue.3	+	2	438	c.228C>T	c.(226-228)TTC>TTT	p.F76F		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	76	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					ATTCCCGCTTCCTGGGCCGAG	0.607													66	48					0	0	0.003610	0	0
CCDC19	25790	broad.mit.edu	37	1	159846395	159846395	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:159846395G>A	uc001fui.2	-	10	1321	c.1303C>T	c.(1303-1305)CTG>TTG	p.L435L	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Silent_p.L350L|CCDC19_uc001ful.2_Silent_p.L350L|CCDC19_uc009wtc.1_3'UTR	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	435	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TGAACAGCCAGAGCGTGCTCC	0.547													8	21					0	0	0.000443	0	0
SLAMF9	89886	broad.mit.edu	37	1	159921493	159921493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:159921493C>T	uc001fus.2	-	4	945	c.828G>A	c.(826-828)ATG>ATA	p.M276I	SLAMF9_uc009wtd.2_Missense_Mutation_p.M185I|SLAMF9_uc001fut.2_3'UTR	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	276	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCCTCAATTTCATTCTGTTTC	0.507													29	66					0	0	0.002096	0	0
IGSF8	93185	broad.mit.edu	37	1	160062869	160062869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160062869G>A	uc001fva.2	-	4	1202	c.1157C>T	c.(1156-1158)TCC>TTC	p.S386F	IGSF8_uc001fuz.2_Missense_Mutation_p.S386F|IGSF8_uc009wtf.2_Missense_Mutation_p.S386F	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8	386	Ig-like C2-type 3.|Extracellular (Potential).				cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GTATGTTCTGGATGCCACCTT	0.662													13	14					0	0	0.003163	0	0
ATP1A2	477	broad.mit.edu	37	1	160098870	160098870	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160098870C>T	uc001fvc.2	+	10	1449	c.1317C>T	c.(1315-1317)TCC>TCT	p.S439S	ATP1A2_uc001fvb.2_Silent_p.S439S|ATP1A2_uc001fvd.2_Silent_p.S175S|ATP1A2_uc009wtg.1_Silent_p.S127S	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	439	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			AGAACATCTCCGTGTCTAAGG	0.567													5	11					0	0	0.000602	0	0
ATP1A2	477	broad.mit.edu	37	1	160104985	160104985	+	Missense_Mutation	SNP	C	T	T	rs145701604		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160104985C>T	uc001fvc.2	+	15	2147	c.2015C>T	c.(2014-2016)TCG>TTG	p.S672L	ATP1A2_uc001fvb.2_Missense_Mutation_p.S672L|ATP1A2_uc001fvd.2_Missense_Mutation_p.S408L	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	672	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GACATGACATCGGAGCAGCTC	0.577													24	39					0	0	0.004656	0	0
ATP1A2	477	broad.mit.edu	37	1	160109445	160109445	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160109445T>A	uc001fvc.2	+	21	2988	c.2856T>A	c.(2854-2856)ATT>ATA	p.I952I	ATP1A2_uc001fvd.2_Silent_p.I671I	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	952	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			AGATCCTGATTTTTGGGCTCC	0.557													31	35					0	0	0.004878	0	0
CASQ1	844	broad.mit.edu	37	1	160163593	160163593	+	Missense_Mutation	SNP	G	A	A	rs138808242		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160163593G>A	uc010pja.1	+	3	678	c.421G>A	c.(421-423)GAT>AAT	p.D141N		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	141						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CATTGAGTACGATGGCGAGTT	0.542													71	33					0	0	0.003610	0	0
CASQ1	844	broad.mit.edu	37	1	160165270	160165270	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160165270T>G	uc010pja.1	+	5	854	c.597T>G	c.(595-597)GAT>GAG	p.D199E		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	199						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCTTCGAGGATGCAGCTGAGG	0.557													29	52					0	0	0.003755	0	0
VANGL2	57216	broad.mit.edu	37	1	160385668	160385668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160385668C>T	uc001fwb.1	+	3	340	c.41C>T	c.(40-42)TCG>TTG	p.S14L	VANGL2_uc001fwc.1_Missense_Mutation_p.S14L	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	14	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCCTACAAGTCGGGCCACTCC	0.677													12	27					0	0	0.001855	0	0
VANGL2	57216	broad.mit.edu	37	1	160385896	160385896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160385896G>A	uc001fwb.1	+	4	415	c.116G>A	c.(115-117)CGA>CAA	p.R39Q	VANGL2_uc001fwc.1_Missense_Mutation_p.R39Q	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	39	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GATGGGGGCCGAGGGGACAAG	0.642													17	47					0	0	0.000958	0	0
SLAMF6	114836	broad.mit.edu	37	1	160465953	160465953	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160465953G>A	uc001fwe.1	-	2	340	c.280C>T	c.(280-282)CTG>TTG	p.L94L	SLAMF6_uc001fwd.1_Silent_p.L94L|SLAMF6_uc010pjh.1_Silent_p.L45L|SLAMF6_uc010pji.1_Intron|SLAMF6_uc010pjj.1_Intron|SLAMF6_uc009wtm.1_Silent_p.L45L	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	94	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			CTGAGTTGCAGGGAGTAGGAC	0.473													68	63					0	0	0.003610	0	0
LY9	4063	broad.mit.edu	37	1	160766023	160766023	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160766023T>A	uc001fwu.2	+	1	96	c.46T>A	c.(46-48)TTC>ATC	p.F16I	LY9_uc001fwt.2_Missense_Mutation_p.F16I|LY9_uc010pjs.1_Missense_Mutation_p.F16I|LY9_uc001fwv.2_Missense_Mutation_p.F16I|LY9_uc001fww.2_Missense_Mutation_p.F16I|LY9_uc001fwx.2_Missense_Mutation_p.F16I	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	16					cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TCCTGGGCCTTTCTCCAGTAA	0.498													32	80					0	0	0.002096	0	0
LY9	4063	broad.mit.edu	37	1	160769557	160769557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160769557G>A	uc001fwu.2	+	2	189	c.139G>A	c.(139-141)GGA>AGA	p.G47R	LY9_uc001fwt.2_Missense_Mutation_p.G47R|LY9_uc010pjs.1_Missense_Mutation_p.G47R|LY9_uc001fwv.2_Missense_Mutation_p.G47R|LY9_uc001fww.2_Missense_Mutation_p.G47R|LY9_uc001fwx.2_Missense_Mutation_p.G47R|LY9_uc001fwy.1_5'UTR	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	47					cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AAGAGCCTCTGGAAAGGACTC	0.507													34	19					0	0	0.003755	0	0
LY9	4063	broad.mit.edu	37	1	160784216	160784216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160784216G>A	uc001fwu.2	+	4	787	c.737G>A	c.(736-738)GGA>GAA	p.G246E	LY9_uc010pjs.1_Missense_Mutation_p.G246E|LY9_uc001fwv.2_Missense_Mutation_p.G246E|LY9_uc001fww.2_Missense_Mutation_p.G246E|LY9_uc001fwx.2_Missense_Mutation_p.G246E|LY9_uc001fwy.1_Missense_Mutation_p.G148E|LY9_uc001fwz.2_5'UTR	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	246	Extracellular (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CCAGATCCAGGAGCCTCCAGA	0.602													18	58					0	0	0.001523	0	0
LY9	4063	broad.mit.edu	37	1	160786513	160786513	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160786513A>C	uc001fwu.2	+	5	1252	c.1202A>C	c.(1201-1203)AAG>ACG	p.K401T	LY9_uc001fwv.2_Missense_Mutation_p.K401T|LY9_uc001fww.2_Intron|LY9_uc001fwx.2_Intron|LY9_uc001fwy.1_Intron|LY9_uc001fwz.2_Missense_Mutation_p.K53T	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	401	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CCGCTGCAGAAGGAAGCTGTT	0.562													17	17					0	0	0.000958	0	0
CD244	51744	broad.mit.edu	37	1	160811109	160811109	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160811109C>T	uc009wtq.2	-	3	739	c.561G>A	c.(559-561)GAG>GAA	p.E187E	CD244_uc001fxa.2_Silent_p.E182E|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Intron|CD244_uc010pjt.1_RNA	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	187	Extracellular (Potential).|Ig-like 2.				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TGTCAACCTCCTCGTCCAGGT	0.512													73	65					0	0	0.003610	0	0
CD244	51744	broad.mit.edu	37	1	160811674	160811674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:160811674C>T	uc009wtq.2	-	2	257	c.79G>A	c.(79-81)GAC>AAC	p.D27N	CD244_uc001fxa.2_Missense_Mutation_p.D27N|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Missense_Mutation_p.D27N|CD244_uc010pjt.1_RNA	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	27	Extracellular (Potential).|Ig-like 1.				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			ACCACATGGTCAGCTGATCCC	0.512													17	28					0	0	0.000958	0	0
PVRL4	81607	broad.mit.edu	37	1	161044479	161044479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:161044479C>T	uc001fxo.2	-	5	1221	c.922G>A	c.(922-924)GAG>AAG	p.E308K	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_Missense_Mutation_p.E42K	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	308	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CCGCTGTGCTCAGTGGTCAGT	0.572													12	37					0	0	0.001855	0	0
MPZ	4359	broad.mit.edu	37	1	161276216	161276216	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:161276216C>G	uc001gaf.3	-	4	554	c.517G>C	c.(517-519)GGG>CGG	p.G173R	MPZ_uc010pko.1_RNA	NM_000530	NP_000521	P25189	MYP0_HUMAN	myelin protein zero	163	Helical; (Potential).		G -> R (in CMT1B).		synaptic transmission	integral to plasma membrane	structural molecule activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)	Breast(1374;0.181)	BRCA - Breast invasive adenocarcinoma(70;0.00376)			AGGACACCCCCGATCACAGCT	0.602													3	73					0	0	0.000248	0	0
NOS1AP	9722	broad.mit.edu	37	1	162124242	162124242	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:162124242C>T	uc001gbv.2	+	2	540	c.153C>T	c.(151-153)ATC>ATT	p.I51I	NOS1AP_uc010pkr.1_Silent_p.I51I|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Silent_p.I51I	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	51	PID.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			GGGTGGAGATCGTGGCTGCCA	0.602													28	18					0	0	0.001786	0	0
NOS1AP	9722	broad.mit.edu	37	1	162325066	162325066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:162325066G>A	uc001gbv.2	+	7	1072	c.685G>A	c.(685-687)GAT>AAT	p.D229N	NOS1AP_uc010pkr.1_Missense_Mutation_p.D224N|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.D224N	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	229					regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			TCCAGGGAATGATGTCCTGGA	0.592													54	50					0	0	0.003610	0	0
NOS1AP	9722	broad.mit.edu	37	1	162335266	162335266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:162335266C>T	uc001gbv.2	+	9	1399	c.1012C>T	c.(1012-1014)CTT>TTT	p.L338F	NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.L333F|NOS1AP_uc009wut.1_Missense_Mutation_p.L43F	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	338	Potential.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			CGTGCATCAGCTTTTGCTGCA	0.597													24	57					0	0	0.003954	0	0
NOS1AP	9722	broad.mit.edu	37	1	162336938	162336938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:162336938C>T	uc001gbv.2	+	10	1589	c.1202C>T	c.(1201-1203)TCG>TTG	p.S401L	NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.S396L|NOS1AP_uc009wut.1_Missense_Mutation_p.S106L	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	401					regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			GACCTGCATTCGCCGCCGCTG	0.657													62	38					0	0	0.003610	0	0
LMX1A	4009	broad.mit.edu	37	1	165175192	165175192	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:165175192G>A	uc001gcy.1	-	7	1118	c.897C>T	c.(895-897)CTC>CTT	p.L299L	LMX1A_uc001gcz.1_Silent_p.L299L|LMX1A_uc001gcw.1_Silent_p.L17L|LMX1A_uc001gcx.1_Silent_p.L50L	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	299						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CGATGGCCAGGAGCTGCTGTG	0.582													43	37					0	0	0.002852	0	0
LMX1A	4009	broad.mit.edu	37	1	165182914	165182914	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:165182914C>A	uc001gcy.1	-	4	854	c.633G>T	c.(631-633)AAG>AAT	p.K211N	LMX1A_uc001gcz.1_Missense_Mutation_p.K211N|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	211	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CAAATGAGGCCTTGAATGCTC	0.562													109	70					3.39137e-47	5.90925e-47	0.003610	1	0
LMX1A	4009	broad.mit.edu	37	1	165183025	165183025	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:165183025G>A	uc001gcy.1	-	4	743	c.522C>T	c.(520-522)CTC>CTT	p.L174L	LMX1A_uc001gcz.1_Silent_p.L174L|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	174						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CTGACTTGCAGAGACTTTCTT	0.488													78	79					0	0	0.003610	0	0
LRRC52	440699	broad.mit.edu	37	1	165514118	165514118	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:165514118C>T	uc001gde.2	+	1	641	c.585C>T	c.(583-585)TTC>TTT	p.F195F	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	195	Extracellular (Potential).|LRRCT.					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					TCCTGGACTTCGCCATCTTCT	0.512													45	79					0	0	0.003610	0	0
LRRC52	440699	broad.mit.edu	37	1	165532784	165532784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:165532784G>A	uc001gde.2	+	2	721	c.665G>A	c.(664-666)GGG>GAG	p.G222E	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	222	Extracellular (Potential).|LRRCT.					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					GAGCTGACAGGGTGGCCCATC	0.547													15	31					0	0	0.004990	0	0
ILDR2	387597	broad.mit.edu	37	1	166927192	166927192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:166927192G>A	uc001gdx.1	-	2	249	c.193C>T	c.(193-195)CGC>TGC	p.R65C		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	65	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						TCTCCCATGCGATCCTGGCAG	0.557													30	87					0	0	0.002445	0	0
DUSP27	92235	broad.mit.edu	37	1	167097262	167097262	+	Missense_Mutation	SNP	C	T	T	rs147653213		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:167097262C>T	uc001geb.1	+	5	2894	c.2894C>T	c.(2893-2895)TCG>TTG	p.S965L		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	965	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TACACCAGATCGTCCCTGCTC	0.502													22	38					0	0	0.001882	0	0
RCSD1	92241	broad.mit.edu	37	1	167666671	167666671	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:167666671G>A	uc001gem.2	+	6	997	c.810G>A	c.(808-810)GAG>GAA	p.E270E	RCSD1_uc010pli.1_Silent_p.E240E	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	270	RCSD.									ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					GTTCAGAGGAGGTGGACGGCC	0.632													7	5					0	0	0.003080	0	0
XCL1	6375	broad.mit.edu	37	1	168545900	168545900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:168545900C>T	uc001gfo.1	+	1	45	c.25C>T	c.(25-27)CTT>TTT	p.L9F		NM_002995	NP_002986	P47992	XCL1_HUMAN	chemokine (C motif) ligand 1	9					CD4-positive, alpha-beta T cell proliferation|CD8-positive, alpha-beta T cell proliferation|cell-cell signaling|cellular response to interleukin-4|cellular response to transforming growth factor beta stimulus|immunoglobulin production in mucosal tissue|lymphocyte chemotaxis|negative regulation of interferon-gamma production|negative regulation of interleukin-2 production|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T cell cytokine production|negative regulation of T-helper 1 cell activation|negative regulation of transcription, DNA-dependent|neutrophil chemotaxis|positive regulation of activated T cell proliferation|positive regulation of B cell chemotaxis|positive regulation of granzyme A production|positive regulation of granzyme B production|positive regulation of interleukin-10 production|positive regulation of natural killer cell chemotaxis|positive regulation of neutrophil chemotaxis|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of T cell chemotaxis|positive regulation of T cell cytokine production|positive regulation of T cell mediated cytotoxicity|positive regulation of thymocyte migration|positive regulation of transforming growth factor-beta production|regulation of inflammatory response|release of sequestered calcium ion into cytosol|response to virus|T-helper 1 cell cytokine production|T-helper 2 cell cytokine production	extracellular space	chemokine activity|protein homodimerization activity				0	all_hematologic(923;0.208)					CCTGGCCCTCCTTGGCATCTG	0.527													36	51					0	0	0.001951	0	0
SLC19A2	10560	broad.mit.edu	37	1	169439359	169439359	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:169439359G>A	uc001gge.3	-	3	1077	c.873C>T	c.(871-873)TCC>TCT	p.S291S	SLC19A2_uc001ggf.3_Silent_p.S90S	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	291	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					GAGGGCGAGAGGAGTAGCACA	0.488													29	87					0	0	0.002096	0	0
SELP	6403	broad.mit.edu	37	1	169581539	169581539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:169581539C>T	uc001ggi.3	-	6	942	c.877G>A	c.(877-879)GAA>AAA	p.E293K	SELP_uc001ggh.2_Missense_Mutation_p.E128K|SELP_uc009wvr.2_Missense_Mutation_p.E293K	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	293	Extracellular (Potential).|Sushi 2.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	AATCCCTCTTCACAACTGAAG	0.527													59	42					0	0	0.003610	0	0
C1orf112	55732	broad.mit.edu	37	1	169772407	169772408	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:169772407_169772408CC>TT	uc001ggp.2	+	6	579_580	c.269_270CC>TT	c.(268-270)TCC>TTT	p.S90F	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggo.2_Missense_Mutation_p.S90F|C1orf112_uc001ggq.2_Missense_Mutation_p.S90F|C1orf112_uc009wvt.2_5'UTR|C1orf112_uc010plu.1_Missense_Mutation_p.S61F|C1orf112_uc009wvu.1_Missense_Mutation_p.S61F|C1orf112_uc001ggr.2_5'UTR|C1orf112_uc010plv.1_Missense_Mutation_p.S32F	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	90											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGTCTCCCCTCCTCAGTCCTTC	0.401													17	31					0	0	0.004672	0	0
C1orf9	51430	broad.mit.edu	37	1	172525083	172525083	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:172525083C>T	uc001giq.3	+	4	679	c.363C>T	c.(361-363)TCC>TCT	p.S121S	C1orf9_uc010pmm.1_Silent_p.S121S|C1orf9_uc009wwd.2_Silent_p.S84S|C1orf9_uc010pmn.1_Silent_p.S84S|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	121					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		AAGAGTCTTCCAATGCAGTTG	0.378													32	13					0	0	0.001786	0	0
C1orf9	51430	broad.mit.edu	37	1	172525121	172525121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:172525121C>T	uc001giq.3	+	4	717	c.401C>T	c.(400-402)TCC>TTC	p.S134F	C1orf9_uc010pmm.1_Missense_Mutation_p.S134F|C1orf9_uc009wwd.2_Missense_Mutation_p.S97F|C1orf9_uc010pmn.1_Missense_Mutation_p.S97F|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	134					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		GAAAATATTTCCAGCTCATCT	0.373													28	21					0	0	0.001512	0	0
FASLG	356	broad.mit.edu	37	1	172633473	172633473	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:172633473G>A	uc001gis.2	+	3	552	c.395_splice	c.e3-1	p.G132_splice	FASLG_uc001git.2_Splice_Site_p.A117_splice	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand						activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						CTATGATACAGGCCACCCCAG	0.363													35	24					0	0	0.005524	0	0
TNFSF18	8995	broad.mit.edu	37	1	173020090	173020090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:173020090G>A	uc001giu.2	-	1	14	c.13C>T	c.(13-15)CCT>TCT	p.P5S		NM_005092	NP_005083	Q9UNG2	TNF18_HUMAN	tumor necrosis factor (ligand) superfamily,	5					anti-apoptosis|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						ATGGGTGAAGGATGCAATGTC	0.373													34	18					0	0	0.003755	0	0
SLC9A11	284525	broad.mit.edu	37	1	173486714	173486714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:173486714C>T	uc001giz.2	-	23	3292	c.2869G>A	c.(2869-2871)GAA>AAA	p.E957K	SLC9A11_uc009wwe.2_Missense_Mutation_p.E515K	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	957	cNMP.				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TATTCAATTTCACGCTTAAGC	0.368													75	58					0	0	0.003610	0	0
SLC9A11	284525	broad.mit.edu	37	1	173526501	173526501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:173526501C>T	uc001giz.2	-	10	1616	c.1193G>A	c.(1192-1194)CGA>CAA	p.R398Q	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	398					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TTCCACTTTTCGTTCAGCGAG	0.363													100	89					0	0	0.003610	0	0
SLC9A11	284525	broad.mit.edu	37	1	173556831	173556831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:173556831G>A	uc001giz.2	-	5	919	c.496C>T	c.(496-498)CGT>TGT	p.R166C	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	166					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TTCACAGAACGAAGAGGATCT	0.299													19	59					0	0	0.000958	0	0
SLC9A11	284525	broad.mit.edu	37	1	173569306	173569306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:173569306G>A	uc001giz.2	-	3	601	c.178C>T	c.(178-180)CTT>TTT	p.L60F	SLC9A11_uc010pmq.1_Intron	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	60	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						GATAGAGAAAGAATCGTCAAA	0.249													41	41					0	0	0.002852	0	0
TNN	63923	broad.mit.edu	37	1	175046581	175046581	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:175046581C>T	uc001gkl.1	+	2	140	c.27C>T	c.(25-27)TTC>TTT	p.F9F	TNN_uc010pmx.1_Silent_p.F9F	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	9					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGTTCCGCTTCCCTATGGGGC	0.572													32	83					0	0	0.003271	0	0
TNN	63923	broad.mit.edu	37	1	175046766	175046766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:175046766C>T	uc001gkl.1	+	2	325	c.212C>T	c.(211-213)TCG>TTG	p.S71L	TNN_uc010pmx.1_Missense_Mutation_p.S71L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	71					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GATGGGGCTTCGCTCTTGGCC	0.587													22	11					0	0	0.003954	0	0
TNN	63923	broad.mit.edu	37	1	175063163	175063163	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:175063163G>A	uc001gkl.1	+	7	1475	c.1362G>A	c.(1360-1362)GTG>GTA	p.V454V	TNN_uc010pmx.1_Silent_p.V454V	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	454	Fibronectin type-III 3.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTGATCGAGTGACTGAAGACA	0.438													32	30					0	0	0.003271	0	0
TNR	7143	broad.mit.edu	37	1	175365860	175365860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:175365860C>T	uc001gkp.1	-	3	1141	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	TNR_uc009wwu.1_Missense_Mutation_p.E354K|TNR_uc010pmz.1_Intron	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	354	Fibronectin type-III 1.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ATCACATATTCCGTCACTGCC	0.622													41	42					0	0	0.002222	0	0
TNR	7143	broad.mit.edu	37	1	175375419	175375419	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:175375419C>T	uc001gkp.1	-	1	513	c.432G>A	c.(430-432)CTG>CTA	p.L144L	TNR_uc009wwu.1_Silent_p.L144L|TNR_uc010pmz.1_Silent_p.L144L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	144	Potential.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCTCCCTCTCCAGCATCTCGA	0.597													49	32					0	0	0.003610	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525594	176525594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:176525594G>A	uc001gkz.2	+	2	1300	c.136G>A	c.(136-138)GAA>AAA	p.E46K	PAPPA2_uc001gky.1_Missense_Mutation_p.E46K|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	46					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGTGCTGTTGGAAGGAGAACG	0.557													26	61					0	0	0.004656	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564074	176564074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:176564074C>T	uc001gkz.2	+	3	2498	c.1334C>T	c.(1333-1335)TCA>TTA	p.S445L	PAPPA2_uc001gky.1_Missense_Mutation_p.S445L|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	445	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TCTCAGCATTCAAGTGGGGAG	0.537													39	81					0	0	0.001706	0	0
PAPPA2	60676	broad.mit.edu	37	1	176659413	176659413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:176659413G>A	uc001gkz.2	+	5	3442	c.2278G>A	c.(2278-2280)GAG>AAG	p.E760K	PAPPA2_uc001gky.1_Missense_Mutation_p.E760K|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	760					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCCCTGCAAGGAGACAGTGCC	0.557													60	66					0	0	0.003610	0	0
PAPPA2	60676	broad.mit.edu	37	1	176661333	176661333	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:176661333C>T	uc001gkz.2	+	6	3667	c.2503C>T	c.(2503-2505)CAG>TAG	p.Q835*	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	835					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCTAGTCTATCAGCAGTGGAC	0.502													55	53					0	0	0.003610	0	0
PAPPA2	60676	broad.mit.edu	37	1	176681049	176681049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:176681049G>A	uc001gkz.2	+	12	4894	c.3730G>A	c.(3730-3732)GAA>AAA	p.E1244K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1244					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CAGTGAAAATGAAACTCAGGA	0.448													43	27					0	0	0.001951	0	0
ASTN1	460	broad.mit.edu	37	1	176905403	176905403	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:176905403C>T	uc001glc.2	-	15	2693	c.2481G>A	c.(2479-2481)CAG>CAA	p.Q827Q	ASTN1_uc001glb.1_Silent_p.Q827Q|ASTN1_uc001gld.1_Silent_p.Q827Q|ASTN1_uc009wwx.1_Silent_p.Q827Q	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	835					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						AGTGCTCACCCTGAGAGATGG	0.542													11	38					0	0	0.000978	0	0
ASTN1	460	broad.mit.edu	37	1	176983946	176983946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:176983946C>T	uc001glc.2	-	8	1716	c.1504G>A	c.(1504-1506)GAA>AAA	p.E502K	ASTN1_uc001glb.1_Missense_Mutation_p.E502K|ASTN1_uc001gld.1_Missense_Mutation_p.E502K|ASTN1_uc009wwx.1_Missense_Mutation_p.E502K|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	510					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GTCCCCCATTCGTTCCGAATG	0.493													169	137					0	0	0.003610	0	0
FAM5B	57795	broad.mit.edu	37	1	177247805	177247805	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:177247805G>A	uc001glf.2	+	7	1431	c.1119G>A	c.(1117-1119)CAG>CAA	p.Q373Q	FAM5B_uc010pna.1_Silent_p.Q123Q|FAM5B_uc001glg.2_Silent_p.Q268Q	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	373						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						ACCGCTACCAGCAGCTGGGAG	0.597													56	50					0	0	0.003610	0	0
SEC16B	89866	broad.mit.edu	37	1	177927422	177927422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:177927422G>A	uc001gli.1	-	10	1300	c.1210C>T	c.(1210-1212)CCT>TCT	p.P404S	SEC16B_uc001glk.1_Missense_Mutation_p.P81S|SEC16B_uc001glh.1_Missense_Mutation_p.P63S|SEC16B_uc009wwz.1_Missense_Mutation_p.P63S|SEC16B_uc001glj.1_Missense_Mutation_p.P405S|SEC16B_uc001gll.3_Missense_Mutation_p.P405S	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	404					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						TTGGCCACAGGGGGCTGCCGC	0.587													21	25					0	0	0.002780	0	0
RASAL2	9462	broad.mit.edu	37	1	178411840	178411840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:178411840C>T	uc001glr.2	+	6	639	c.514C>T	c.(514-516)CGT>TGT	p.R172C	RASAL2_uc001glq.2_Missense_Mutation_p.R320C	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	172	C2.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						AAATGTTCTTCGTTTATGGAT	0.393													27	45					0	0	0.002836	0	0
C1orf125	126859	broad.mit.edu	37	1	179354459	179354459	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:179354459C>T	uc001gmo.2	+	9	955	c.828C>T	c.(826-828)GAC>GAT	p.D276D	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Silent_p.D64D|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Silent_p.D276D	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	276											0						TCAGTGTGGACTGTGCAGACA	0.353													44	60					0	0	0.003610	0	0
QSOX1	5768	broad.mit.edu	37	1	180165992	180165992	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:180165992C>T	uc001gnz.2	+	12	2139	c.2064C>T	c.(2062-2064)GCC>GCT	p.A688A	QSOX1_uc001gny.2_Intron|QSOX1_uc001goa.2_Intron|QSOX1_uc001goc.2_Silent_p.A230A|FLJ23867_uc001god.3_5'Flank	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	688					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						AGCTGGAGGCCCGAGCTGGAC	0.667													18	29					0	0	0.000958	0	0
STX6	10228	broad.mit.edu	37	1	180962549	180962549	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:180962549G>A	uc010pnq.1	-	4	550	c.313C>T	c.(313-315)CAG>TAG	p.Q105*	STX6_uc001goo.2_Nonsense_Mutation_p.Q105*|STX6_uc010pnr.1_Nonsense_Mutation_p.Q4*	NM_005819	NP_005810	O43752	STX6_HUMAN	syntaxin 6	105	Cytoplasmic (Potential).				Golgi vesicle transport|intracellular protein transport|vesicle fusion	clathrin-coated vesicle|early endosome|integral to membrane|perinuclear region of cytoplasm|plasma membrane|trans-Golgi network membrane	SNAP receptor activity			ovary(1)	1						GTTGACATCTGATCTTTCATG	0.308													49	52					0	0	0.003610	0	0
CACNA1E	777	broad.mit.edu	37	1	181479682	181479682	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:181479682T>A	uc001gow.2	+	2	501	c.336T>A	c.(334-336)CTT>CTA	p.L112L	CACNA1E_uc009wxr.2_Silent_p.L19L|CACNA1E_uc009wxs.2_Silent_p.L19L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	112	I.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGCAGCATCTTCCTGAGGATG	0.517													9	19					0	0	0.000978	0	0
CACNA1E	777	broad.mit.edu	37	1	181480509	181480509	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:181480509G>A	uc001gow.2	+	3	540	c.375G>A	c.(373-375)GAG>GAA	p.E125E	CACNA1E_uc009wxr.2_Silent_p.E32E|CACNA1E_uc009wxs.2_Silent_p.E32E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	125	I.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCCCACAGGAGAAGACAGAAC	0.502													105	101					0	0	0.003610	0	0
CACNA1E	777	broad.mit.edu	37	1	181702759	181702759	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:181702759C>T	uc001gow.2	+	21	3300	c.3135C>T	c.(3133-3135)GTC>GTT	p.V1045V	CACNA1E_uc009wxs.2_Silent_p.V933V|CACNA1E_uc001gox.1_Silent_p.V271V|CACNA1E_uc009wxt.2_Silent_p.V271V	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1045	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGGGCCGGGTCATCAGCCAGA	0.652													6	15					0	0	0.001168	0	0
CACNA1E	777	broad.mit.edu	37	1	181727983	181727983	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:181727983G>A	uc001gow.2	+	32	4749	c.4584G>A	c.(4582-4584)AAG>AAA	p.K1528K	CACNA1E_uc009wxs.2_Silent_p.K1416K|CACNA1E_uc001gox.1_Silent_p.K754K|CACNA1E_uc009wxt.2_Silent_p.K754K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1528	Helical; Name=S2 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTGTCCTGAAGGTCATCGCTT	0.498													23	69					0	0	0.005443	0	0
CACNA1E	777	broad.mit.edu	37	1	181745296	181745296	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:181745296C>T	uc001gow.2	+	38	5364	c.5199C>T	c.(5197-5199)TCC>TCT	p.S1733S	CACNA1E_uc009wxs.2_Silent_p.S1621S|CACNA1E_uc001gox.1_Silent_p.S959S|CACNA1E_uc009wxt.2_Silent_p.S959S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1733	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTCGGGACTCCTCCATCCTGG	0.597													44	95					0	0	0.003214	0	0
CACNA1E	777	broad.mit.edu	37	1	181754866	181754866	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:181754866C>T	uc001gow.2	+	43	5862	c.5697C>T	c.(5695-5697)TTC>TTT	p.F1899F	CACNA1E_uc009wxs.2_Silent_p.F1787F|CACNA1E_uc009wxt.2_Silent_p.F1125F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1899	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCCCCATGTTCCAGCGCATGG	0.478													69	149					0	0	0.003610	0	0
CACNA1E	777	broad.mit.edu	37	1	181767715	181767715	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:181767715C>T	uc001gow.2	+	47	6723	c.6558C>T	c.(6556-6558)TCC>TCT	p.S2186S	CACNA1E_uc009wxs.2_Silent_p.S2074S|CACNA1E_uc009wxt.2_Silent_p.S1455S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2229	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GCTACATCTCCGAGCCCTACT	0.612													9	16					0	0	0.004482	0	0
RGS8	85397	broad.mit.edu	37	1	182615949	182615949	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:182615949T>A	uc010pnw.1	-	7	722	c.464A>T	c.(463-465)GAG>GTG	p.E155V	RGS8_uc001gpn.1_Missense_Mutation_p.E155V|RGS8_uc001gpm.1_Missense_Mutation_p.E173V	NM_001102450	NP_001095920	P57771	RGS8_HUMAN	regulator of G-protein signalling 8 isoform 2	155	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)	1						AGAGTCTTTCTCCATGAGGCT	0.517													94	59					0	0	0.003610	0	0
LAMC1	3915	broad.mit.edu	37	1	183072564	183072564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:183072564C>T	uc001gpy.3	+	2	777	c.520C>T	c.(520-522)CCT>TCT	p.P174S	LAMC1_uc001gpx.2_Missense_Mutation_p.P174S	NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	174	Laminin N-terminal.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCCCTGGATTCCTTACCAGTA	0.547													36	35					0	0	0.004289	0	0
RGL1	23179	broad.mit.edu	37	1	183711383	183711383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:183711383G>A	uc001gqm.2	+	2	552	c.91G>A	c.(91-93)GAA>AAA	p.E31K	RGL1_uc010pof.1_5'UTR|RGL1_uc010pog.1_Missense_Mutation_p.E31K|RGL1_uc010poh.1_Missense_Mutation_p.E31K	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	Error:Variant_position_missing_in_Q9NZL6_after_alignment					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						CTGGCTGGTGGAAGATCATGT	0.428													38	33					0	0	0.001706	0	0
FAM129A	116496	broad.mit.edu	37	1	184868373	184868373	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:184868373T>A	uc001gra.2	-	2	319	c.125A>T	c.(124-126)AAT>ATT	p.N42I	FAM129A_uc009wyh.1_Missense_Mutation_p.N42I|FAM129A_uc009wyi.1_5'UTR	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	42					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GCGCACGTGATTGCAGAAAGC	0.398													58	47					0	0	0.003610	0	0
PRG4	10216	broad.mit.edu	37	1	186274013	186274013	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:186274013A>G	uc001gru.3	+	6	608	c.557A>G	c.(556-558)AAA>AGA	p.K186R	PRG4_uc001grt.3_Missense_Mutation_p.K145R|PRG4_uc009wyl.2_Intron|PRG4_uc009wym.2_Intron|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	186	Ser-rich.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AAGTCTTCCAAAAATTCAGCT	0.239													40	41					0	0	0.002852	0	0
PDC	5132	broad.mit.edu	37	1	186415700	186415700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:186415700C>T	uc001gsa.2	-	3	144	c.71G>A	c.(70-72)GGA>GAA	p.G24E	PDC_uc001grz.2_5'UTR	NM_002597	NP_002588	P20941	PHOS_HUMAN	phosducin isoform a	24					G-protein coupled receptor protein signaling pathway|phototransduction|visual perception	actin cytoskeleton|cytosol|nucleus|photoreceptor inner segment|photoreceptor outer segment	phospholipase inhibitor activity			skin(1)	1		Breast(1374;1.53e-05)		KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.0129)		ATTTATTACTCCTTTGGGTCC	0.328													28	55					0	0	0.001786	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186880479	186880479	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:186880479C>T	uc001gsc.2	+	7	721	c.516C>T	c.(514-516)CTC>CTT	p.L172L	PLA2G4A_uc010pos.1_Intron	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	172	Phospholipid binding (Probable).|PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	TGAAGAAACTCTTGGGTCCAA	0.388													29	79					0	0	0.002445	0	0
FAM5C	339479	broad.mit.edu	37	1	190067466	190067466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:190067466C>T	uc001gse.1	-	8	2215	c.1983G>A	c.(1981-1983)ATG>ATA	p.M661I	FAM5C_uc010pot.1_Missense_Mutation_p.M559I	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	661						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TATTGATTTTCATATAGCCCA	0.453													33	83					0	0	0.002445	0	0
RGS21	431704	broad.mit.edu	37	1	192335174	192335174	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:192335174T>A	uc001gsh.2	+	5	553	c.379T>A	c.(379-381)TTT>ATT	p.F127I		NM_001039152	NP_001034241	Q2M5E4	RGS21_HUMAN	regulator of G-protein signaling 21	127	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|skin(1)	2						TTTCCCTCGATTTCTGAAGTC	0.358													34	63					0	0	0.003755	0	0
CFH	3075	broad.mit.edu	37	1	196694406	196694406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:196694406C>T	uc001gtj.3	+	12	2092	c.1852C>T	c.(1852-1854)CCT>TCT	p.P618S		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	618	Sushi 10.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TGGATTGTCTCCTGACCTCCC	0.358													27	45					0	0	0.001786	0	0
CFHR4	10877	broad.mit.edu	37	1	196857321	196857321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:196857321C>T	uc001gto.2	+	1	110	c.41C>T	c.(40-42)TCC>TTC	p.S14F	CFHR4_uc009wyy.2_Missense_Mutation_p.S14F|CFHR4_uc001gtp.2_Missense_Mutation_p.S14F	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	14						extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						TTGTGGGTTTCCTGTGCTAAT	0.343													46	31					0	0	0.003610	0	0
F13B	2165	broad.mit.edu	37	1	197009810	197009810	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:197009810C>T	uc001gtt.1	-	11	1838	c.1794G>A	c.(1792-1794)TGG>TGA	p.W598*		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	598	Sushi 10.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TGTCAAAATCCCATTTCAGAA	0.294													10	37					0	0	0.000443	0	0
F13B	2165	broad.mit.edu	37	1	197029643	197029643	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:197029643C>A	uc001gtt.1	-	5	702	c.658G>T	c.(658-660)GAA>TAA	p.E220*		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	220	Sushi 4.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TAACCATTTTCAATTAATCTT	0.264													21	61					1.10513e-12	1.91506e-12	0.002299	1	0
CRB1	23418	broad.mit.edu	37	1	197390497	197390497	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:197390497G>A	uc001gtz.2	+	6	1674	c.1539G>A	c.(1537-1539)AGG>AGA	p.R513R	CRB1_uc010poz.1_Silent_p.R444R|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.R401R|CRB1_uc010ppb.1_Silent_p.R513R|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_5'UTR|CRB1_uc001gub.1_Silent_p.R162R	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	513	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TAGCCCTCAGGTTTCAGACTG	0.473													27	36					0	0	0.001271	0	0
CRB1	23418	broad.mit.edu	37	1	197391065	197391065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:197391065G>A	uc001gtz.2	+	6	2242	c.2107G>A	c.(2107-2109)GAA>AAA	p.E703K	CRB1_uc010poz.1_Missense_Mutation_p.E634K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.E591K|CRB1_uc010ppb.1_Missense_Mutation_p.E703K|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.E184K|CRB1_uc001gub.1_Missense_Mutation_p.E352K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	703	Extracellular (Potential).|EGF-like 12.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CAGGCCCTATGAAGGCCCCAA	0.522													26	24					0	0	0.001061	0	0
CRB1	23418	broad.mit.edu	37	1	197396898	197396898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:197396898G>A	uc001gtz.2	+	7	2578	c.2443G>A	c.(2443-2445)GGA>AGA	p.G815R	CRB1_uc010poz.1_Missense_Mutation_p.G746R|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G703R|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.G296R|CRB1_uc001gub.1_Missense_Mutation_p.G464R	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	815	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ACAAAACCTAGGATTTATTTC	0.348													13	28					0	0	0.001855	0	0
CRB1	23418	broad.mit.edu	37	1	197398614	197398614	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:197398614C>T	uc001gtz.2	+	8	2847	c.2712C>T	c.(2710-2712)TCC>TCT	p.S904S	CRB1_uc010poz.1_Silent_p.S880S|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.S792S|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Silent_p.S385S|CRB1_uc001gub.1_Silent_p.S553S	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	904	Extracellular (Potential).|EGF-like 13.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTTGCCATTCCCGGTGGGATG	0.507													29	102					0	0	0.002836	0	0
PTPRC	5788	broad.mit.edu	37	1	198682180	198682180	+	Missense_Mutation	SNP	C	T	T	rs142046206		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:198682180C>T	uc001gur.1	+	12	1444	c.1264C>T	c.(1264-1266)CTC>TTC	p.L422F	PTPRC_uc001gus.1_Missense_Mutation_p.L374F|PTPRC_uc001gut.1_Missense_Mutation_p.L261F|PTPRC_uc009wzf.1_Missense_Mutation_p.L310F|PTPRC_uc010ppg.1_Missense_Mutation_p.L358F	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	422	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TAATTTTACCCTCTGTTATAT	0.333													34	99					0	0	0.004289	0	0
PTPRC	5788	broad.mit.edu	37	1	198711129	198711129	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:198711129C>T	uc001gur.1	+	24	2709	c.2529C>T	c.(2527-2529)TTC>TTT	p.F843F	PTPRC_uc001gus.1_Silent_p.F795F|PTPRC_uc001gut.1_Silent_p.F682F	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	843	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GCAATTTCTTCAGTGGTCCCA	0.473													7	20					0	0	0.003080	0	0
PTPRC	5788	broad.mit.edu	37	1	198721378	198721378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:198721378G>A	uc001gur.1	+	30	3382	c.3202G>A	c.(3202-3204)GAA>AAA	p.E1068K	PTPRC_uc001gus.1_Missense_Mutation_p.E1020K|PTPRC_uc001gut.1_Missense_Mutation_p.E907K	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	1068	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TTTTATCTAGGAAATCTGTGC	0.383													21	50					0	0	0.005443	0	0
NR5A2	2494	broad.mit.edu	37	1	200080356	200080356	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:200080356G>A	uc001gvb.2	+	6	1343	c.1137G>A	c.(1135-1137)CAG>CAA	p.Q379Q	NR5A2_uc001gvc.2_Silent_p.Q333Q|NR5A2_uc009wzh.2_Silent_p.Q339Q|NR5A2_uc010pph.1_Silent_p.Q307Q	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	379	Ligand-binding.				embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					AGCTGCTTCAGAACTGCTGGA	0.388													34	36					0	0	0.001485	0	0
C1orf106	55765	broad.mit.edu	37	1	200880918	200880918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:200880918C>T	uc001gvo.2	+	9	1582	c.1552C>T	c.(1552-1554)CCG>TCG	p.P518S	C1orf106_uc010ppm.1_Missense_Mutation_p.P433S	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	518										skin(2)|ovary(1)	3						TGGCTATTTCCCGGCGGGGCG	0.731													10	15					0	0	0.000673	0	0
KIF21B	23046	broad.mit.edu	37	1	200956032	200956032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:200956032C>T	uc001gvs.1	-	26	3946	c.3629G>A	c.(3628-3630)CGA>CAA	p.R1210Q	KIF21B_uc001gvr.1_Missense_Mutation_p.R1210Q|KIF21B_uc009wzl.1_Missense_Mutation_p.R1210Q|KIF21B_uc010ppn.1_Missense_Mutation_p.R1210Q	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1210					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTCTGTGGCTCGAGATTGCCT	0.557													25	20					0	0	0.001061	0	0
KIF21B	23046	broad.mit.edu	37	1	200967635	200967635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:200967635C>T	uc001gvs.1	-	14	2271	c.1954G>A	c.(1954-1956)GAG>AAG	p.E652K	KIF21B_uc001gvr.1_Missense_Mutation_p.E652K|KIF21B_uc009wzl.1_Missense_Mutation_p.E652K|KIF21B_uc010ppn.1_Missense_Mutation_p.E652K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	652	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TTCTCCAGCTCGTCGATCAGC	0.567													51	52					0	0	0.003610	0	0
CACNA1S	779	broad.mit.edu	37	1	201039456	201039456	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:201039456C>T	uc001gvv.2	-	17	2531	c.2304G>A	c.(2302-2304)GAG>GAA	p.E768E		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	768	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GCACGGCCTTCTCTTTCAGCT	0.597													26	80					0	0	0.001061	0	0
CACNA1S	779	broad.mit.edu	37	1	201063147	201063147	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:201063147C>T	uc001gvv.2	-	3	488	c.261G>A	c.(259-261)GAG>GAA	p.E87E		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	87	I.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	ACTCCAGCTTCTCCTGTGGGA	0.393													27	18					0	0	0.003271	0	0
TNNT2	7139	broad.mit.edu	37	1	201335988	201335988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:201335988C>T	uc001gwf.2	-	8	280	c.211G>A	c.(211-213)GAG>AAG	p.E71K	TNNT2_uc001gwg.2_Missense_Mutation_p.E61K|TNNT2_uc001gwh.2_Missense_Mutation_p.E56K|TNNT2_uc001gwi.2_Missense_Mutation_p.E70K|TNNT2_uc009wzr.2_Missense_Mutation_p.E2K|TNNT2_uc001gwj.1_5'Flank|TNNT2_uc009wzs.1_Missense_Mutation_p.E36K|TNNT2_uc001gwk.1_Missense_Mutation_p.E2K|TNNT2_uc009wzt.1_Missense_Mutation_p.E61K|TNNT2_uc001gwl.1_RNA	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	71					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						TTGGACTCCTCCATTGGGCCA	0.597													41	33					0	0	0.003610	0	0
LAD1	3898	broad.mit.edu	37	1	201355941	201355941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:201355941G>A	uc001gwm.2	-	3	783	c.548C>T	c.(547-549)TCC>TTC	p.S183F	LAD1_uc009wzu.1_Missense_Mutation_p.S205F	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	183						basement membrane	structural molecule activity				0						TGGCATGGAGGACTTCTCCAA	0.567													25	56					0	0	0.001271	0	0
NAV1	89796	broad.mit.edu	37	1	201762993	201762993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:201762993C>T	uc001gwu.2	+	14	3742	c.3395C>T	c.(3394-3396)GCC>GTC	p.A1132V	NAV1_uc001gwv.1_Missense_Mutation_p.A632V|NAV1_uc001gww.1_Missense_Mutation_p.A733V|NAV1_uc001gwx.2_Missense_Mutation_p.A741V|NAV1_uc001gwy.1_Missense_Mutation_p.A505V	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1132	Potential.				cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						GCAGAGACGGCCGAGGAGAAG	0.582													20	20					0	0	0.002780	0	0
IPO9	55705	broad.mit.edu	37	1	201842023	201842023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:201842023C>T	uc001gwz.2	+	20	2694	c.2644C>T	c.(2644-2646)CGT>TGT	p.R882C		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	882					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						ACAGGATATCCGTGTGAAGGG	0.522													23	40					0	0	0.004656	0	0
RNPEP	6051	broad.mit.edu	37	1	201974754	201974754	+	Silent	SNP	C	A	A	rs145130543		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:201974754C>A	uc001gxd.2	+	11	1892	c.1863C>A	c.(1861-1863)CTC>CTA	p.L621L	ELF3_uc001gxg.3_5'Flank|RNPEP_uc001gxe.2_Silent_p.L322L|RNPEP_uc001gxf.2_Silent_p.L490L	NM_020216	NP_064601	Q9H4A4	AMPB_HUMAN	arginyl aminopeptidase	621					leukotriene biosynthetic process		epoxide hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.005)		CCCAGACCCTCGCCAAGGAGA	0.542													44	40					1.23103e-26	2.1428e-26	0.003214	1	0
KDM5B	10765	broad.mit.edu	37	1	202700964	202700964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:202700964G>A	uc001gyf.2	-	24	4129	c.4013C>T	c.(4012-4014)CCC>CTC	p.P1338L	KDM5B_uc009xag.2_Missense_Mutation_p.P1374L|KDM5B_uc001gyg.1_Missense_Mutation_p.P1180L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1338					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						ACCATGGAGGGGGATACAACT	0.398													44	41					0	0	0.003214	0	0
KDM5B	10765	broad.mit.edu	37	1	202710800	202710800	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:202710800G>A	uc001gyf.2	-	19	2756	c.2640C>T	c.(2638-2640)CTC>CTT	p.L880L	KDM5B_uc009xag.2_Silent_p.L916L|KDM5B_uc001gyg.1_Silent_p.L722L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	880					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						TTTCCTCAGAGAGTAGTTTCT	0.398													34	33					0	0	0.003755	0	0
KLHL12	59349	broad.mit.edu	37	1	202862512	202862512	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:202862512C>A	uc001gyo.1	-	11	1635	c.1435G>T	c.(1435-1437)GGG>TGG	p.G479W	KLHL12_uc001gym.1_Intron|KLHL12_uc001gyn.1_Intron|KLHL12_uc010pqc.1_Missense_Mutation_p.G517W|KLHL12_uc009xah.1_Missense_Mutation_p.G378W	NM_021633	NP_067646	Q53G59	KLH12_HUMAN	kelch-like 12	479	Interaction with DVL3.|Kelch 5.				Wnt receptor signaling pathway		protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.166)			TCAAATCCCCCCACCACATAA	0.453													7	138					0.00307968	0.00528618	0.003080	1	0
BTG2	7832	broad.mit.edu	37	1	203276294	203276294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:203276294C>T	uc001gzq.2	+	2	276	c.205C>T	c.(205-207)CGC>TGC	p.R69C	FMOD_uc010pqi.1_Intron|uc009xao.1_5'Flank|uc001gzp.1_5'Flank|BTG2_uc009xap.1_RNA	NM_006763	NP_006754	P78543	BTG2_HUMAN	B-cell translocation gene 2	69					DNA repair|neuron projection development|positive regulation of nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(1)|kidney(1)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.203)			CCGCTGCATTCGCATCAACCA	0.612													10	28					0	0	0.000443	0	0
OPTC	26254	broad.mit.edu	37	1	203472062	203472062	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:203472062C>T	uc001gzu.1	+	6	869	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	251	LRR 4.					proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			AGCTGCAGTTCCTTTACCTGT	0.577													24	27					0	0	0.003954	0	0
REN	5972	broad.mit.edu	37	1	204129755	204129755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:204129755C>T	uc001haq.2	-	4	469	c.425G>A	c.(424-426)GGA>GAA	p.G142E		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	142					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	GAGTTCTGTTCCATTGTGCTT	0.562													42	44					0	0	0.002222	0	0
TMEM81	388730	broad.mit.edu	37	1	205053191	205053191	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:205053191G>A	uc001hbt.2	-	1	398	c.258C>T	c.(256-258)ATC>ATT	p.I86I		NM_203376	NP_976310	Q6P7N7	TMM81_HUMAN	transmembrane protein 81 precursor	86	Ig-like.|Extracellular (Potential).					integral to membrane					0	all_cancers(21;0.144)|Breast(84;0.0437)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			GCATCCCACAGATCCAGTTGG	0.502													32	55					0	0	0.003271	0	0
RBBP5	5929	broad.mit.edu	37	1	205065954	205065954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:205065954G>A	uc001hbu.1	-	12	1382	c.1252C>T	c.(1252-1254)CCC>TCC	p.P418S	RBBP5_uc010prd.1_Missense_Mutation_p.P453S|RBBP5_uc001hbv.1_Missense_Mutation_p.P418S|RBBP5_uc010pre.1_Missense_Mutation_p.P285S	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	418					histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			TCCGGTGGGGGGCCGTAAGGA	0.502													5	152					0	0	0.001984	0	0
TMCC2	9911	broad.mit.edu	37	1	205241102	205241102	+	Silent	SNP	C	T	T	rs150035205		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:205241102C>T	uc001hbz.1	+	6	2424	c.1980C>T	c.(1978-1980)TTC>TTT	p.F660F	TMCC2_uc010prf.1_Silent_p.F582F|TMCC2_uc001hca.2_Silent_p.F435F|TMCC2_uc001hcb.1_Silent_p.F420F|TMCC2_uc001hcc.1_Silent_p.F281F|TMCC2_uc001hcd.2_3'UTR	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	660	Helical; (Potential).					integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			TGCTGGTGTTCGTGTCCACCA	0.622													30	60					0	0	0.002445	0	0
IKBKE	9641	broad.mit.edu	37	1	206652286	206652286	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:206652286G>A	uc001hdz.1	+	10	1361	c.993G>A	c.(991-993)ACG>ACA	p.T331T	IKBKE_uc009xbv.1_Silent_p.T331T|IKBKE_uc001hea.1_Silent_p.T246T	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	331					DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					CTGTGTCTAGGATAGCCATTT	0.622													30	71					0	0	0.001485	0	0
C1orf116	79098	broad.mit.edu	37	1	207195954	207195954	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:207195954G>A	uc001hfd.2	-	4	1414	c.1155C>T	c.(1153-1155)TCC>TCT	p.S385S	C1orf116_uc009xcb.1_Silent_p.S139S	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	385						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					ctggagctggggACAGATGCT	0.284													25	24					0	0	0.004656	0	0
C4BPA	722	broad.mit.edu	37	1	207300223	207300223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:207300223C>T	uc001hfo.2	+	7	1066	c.872C>T	c.(871-873)CCT>CTT	p.P291L		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	291	Sushi 4.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						AATCCTTCTCCTCCTGCTTGT	0.403													27	55					0	0	0.002836	0	0
CR2	1380	broad.mit.edu	37	1	207653369	207653369	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:207653369C>T	uc001hfw.2	+	17	3076	c.2982C>T	c.(2980-2982)ACC>ACT	p.T994T	CR2_uc001hfv.2_Silent_p.T1053T|CR2_uc009xch.2_Silent_p.T932T	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	994	Helical; (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TTGTCATTACCTTATACGTGA	0.393													23	60					0	0	0.001061	0	0
CR1	1378	broad.mit.edu	37	1	207680090	207680090	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:207680090G>A	uc001hfy.2	+	3	473	c.333G>A	c.(331-333)GTG>GTA	p.V111V	CR1_uc009xcl.1_Silent_p.V111V|CR1_uc001hfx.2_Silent_p.V111V|CR1_uc010psg.1_Silent_p.V111V|CR1_uc009xcj.1_Silent_p.V111V|CR1_uc009xck.1_Silent_p.V111V	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	111	Extracellular (Potential).|Sushi 2.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CAGATCCTGTGAATGGCATGG	0.383													43	46					0	0	0.003610	0	0
CR1	1378	broad.mit.edu	37	1	207793385	207793385	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:207793385C>T	uc001hfy.2	+	35	6017	c.5877C>T	c.(5875-5877)GAC>GAT	p.D1959D	CR1_uc001hfx.2_Silent_p.D2409D	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1959	Sushi 30.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						ACAGATGGGACCCTCCTCTGG	0.478											OREG0014194	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	16					0	0	0.004007	0	0
CR1L	1379	broad.mit.edu	37	1	207851615	207851615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:207851615C>T	uc001hga.3	+	3	471	c.350C>T	c.(349-351)TCC>TTC	p.S117F	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	117	Sushi 2.					cytoplasm|extracellular region|membrane					0						CAGTTCAGATCCCAAATTAAA	0.413													29	78					0	0	0.001271	0	0
IRF6	3664	broad.mit.edu	37	1	209974688	209974688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:209974688G>A	uc001hhq.1	-	3	334	c.71C>T	c.(70-72)CCT>CTT	p.P24L	IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Missense_Mutation_p.P24L	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	24	IRF tryptophan pentad repeat.				cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		GATGAGCCCAGGGTAGAGGCC	0.572										HNSCC(57;0.16)			47	68					0	0	0.003610	0	0
SERTAD4	56256	broad.mit.edu	37	1	210415401	210415401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:210415401G>A	uc001hhy.2	+	4	969	c.790G>A	c.(790-792)GAA>AAA	p.E264K	SERTAD4_uc009xcw.2_Missense_Mutation_p.E264K	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	264							protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		ACCTGCCAATGAAATCTTTGT	0.408													9	38					0	0	0.000673	0	0
DTL	51514	broad.mit.edu	37	1	212216443	212216443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:212216443G>A	uc009xdc.2	+	2	475	c.161G>A	c.(160-162)GGA>GAA	p.G54E	DTL_uc010ptb.1_Intron|DTL_uc001hiz.3_Intron	NM_016448	NP_057532	Q9NZJ0	DTL_HUMAN	denticleless homolog	54	WD 1.				DNA replication|G2/M transition DNA damage checkpoint|protein monoubiquitination|protein polyubiquitination|response to UV|translesion synthesis|ubiquitin-dependent protein catabolic process	centrosome|Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|nuclear membrane	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00796)|all cancers(67;0.0385)|Epithelial(68;0.102)		CCTCCTTTTGGATGTACCTTC	0.403													35	82					0	0	0.001287	0	0
FAM71A	149647	broad.mit.edu	37	1	212799806	212799806	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:212799806C>T	uc001hjk.2	+	1	1991	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	529										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		TCAGCTCTTTCCTGAGGAACG	0.547													15	35					0	0	0.003163	0	0
CENPF	1063	broad.mit.edu	37	1	214816472	214816472	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:214816472C>T	uc001hkm.2	+	12	4965	c.4791C>T	c.(4789-4791)TGC>TGT	p.C1597C		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	1693	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AGCTTGACTGCCTTAGGAAGC	0.418													13	28					0	0	0.001368	0	0
KCTD3	51133	broad.mit.edu	37	1	215751065	215751065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:215751065C>T	uc001hks.2	+	5	604	c.310C>T	c.(310-312)CCA>TCA	p.P104S	KCTD3_uc001hkt.2_Missense_Mutation_p.P104S|KCTD3_uc010pub.1_5'UTR|KCTD3_uc009xdn.2_5'Flank	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	104						voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		CGGGATCACTCCATTAGGTAT	0.338													22	70					0	0	0.002299	0	0
USH2A	7399	broad.mit.edu	37	1	215844436	215844436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:215844436C>T	uc001hku.1	-	64	14398	c.14011G>A	c.(14011-14013)GAA>AAA	p.E4671K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4671	Fibronectin type-III 32.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTGTATAATTCGTAATACAAA	0.418										HNSCC(13;0.011)			42	88					0	0	0.001485	0	0
USH2A	7399	broad.mit.edu	37	1	215844527	215844527	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:215844527C>T	uc001hku.1	-	64	14307	c.13920G>A	c.(13918-13920)CTG>CTA	p.L4640L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4640	Fibronectin type-III 32.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTTGTACCTCCAGATGTGGAG	0.478										HNSCC(13;0.011)			55	46					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	215848027	215848027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:215848027G>A	uc001hku.1	-	63	13613	c.13226C>T	c.(13225-13227)TCC>TTC	p.S4409F		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4409	Extracellular (Potential).|Fibronectin type-III 29.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTGCAGGTGGGAAACCAGCAG	0.483										HNSCC(13;0.011)			24	62					0	0	0.005443	0	0
USH2A	7399	broad.mit.edu	37	1	215848409	215848409	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:215848409G>A	uc001hku.1	-	63	13231	c.12844C>T	c.(12844-12846)CTG>TTG	p.L4282L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4282	Fibronectin type-III 28.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CAGGAAATCAGCAGTTTTTGG	0.353										HNSCC(13;0.011)			24	41					0	0	0.002780	0	0
USH2A	7399	broad.mit.edu	37	1	215848679	215848679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:215848679G>A	uc001hku.1	-	63	12961	c.12574C>T	c.(12574-12576)CGC>TGC	p.R4192C		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4192	Extracellular (Potential).|Fibronectin type-III 27.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AAGCATCTGCGAATCACTTCA	0.438										HNSCC(13;0.011)			59	63					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	215901522	215901522	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:215901522C>T	uc001hku.1	-	61	12303	c.11916G>A	c.(11914-11916)TGG>TGA	p.W3972*		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3972	Fibronectin type-III 25.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGGCTTGAGCCCAAGGAGCTG	0.488										HNSCC(13;0.011)			27	55					0	0	0.004656	0	0
USH2A	7399	broad.mit.edu	37	1	215972345	215972345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:215972345C>T	uc001hku.1	-	50	10249	c.9862G>A	c.(9862-9864)GAT>AAT	p.D3288N		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3288	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CCATGGCCATCATGAAGCCTC	0.512										HNSCC(13;0.011)			48	32					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	216251629	216251630	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:216251629_216251630CC>AA	uc001hku.1	-	27	5760_5761	c.5373_5374GG>TT	c.(5371-5376)CTGGGG>CTTTGG	p.G1792W		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1792	Laminin G-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TAGGATAGCCCCAGCAATAGAT	0.366										HNSCC(13;0.011)			11	437					0	0	0.004672	0	0
RRP15	51018	broad.mit.edu	37	1	218504303	218504303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:218504303C>T	uc001hlj.2	+	5	749	c.719C>T	c.(718-720)TCA>TTA	p.S240L	RRP15_uc001hlk.2_RNA	NM_016052	NP_057136	Q9Y3B9	RRP15_HUMAN	ribosomal RNA processing 15 homolog	240						mitochondrion|nucleolus	protein binding				0				all cancers(67;0.0315)|OV - Ovarian serous cystadenocarcinoma(81;0.0411)|GBM - Glioblastoma multiforme(131;0.06)|Epithelial(68;0.248)		GAAGTGAAATCAGAAGAAGGC	0.383													13	30					0	0	0.004007	0	0
MIA3	375056	broad.mit.edu	37	1	222802619	222802620	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:222802619_222802620CC>TT	uc001hnl.2	+	4	2066_2067	c.2057_2058CC>TT	c.(2056-2058)TCC>TTT	p.S686F	MIA3_uc009xea.1_Missense_Mutation_p.S522F	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	686	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AAAGAGGACTCCTTGGATGAAG	0.48													131	266					0	0	0.004672	0	0
TLR5	7100	broad.mit.edu	37	1	223284970	223284970	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:223284970G>A	uc001hnv.1	-	4	1850	c.1404C>T	c.(1402-1404)ACC>ACT	p.T468T	TLR5_uc001hnw.1_Silent_p.T468T	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	468	Extracellular (Potential).|LRR 11.		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity	p.T468T(1)		ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		TCTCTGAAGGGGTTTGATCTC	0.413													38	44					0	0	0.005524	0	0
TLR5	7100	broad.mit.edu	37	1	223286250	223286250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:223286250G>A	uc001hnv.1	-	4	570	c.124C>T	c.(124-126)CCC>TCC	p.P42S	TLR5_uc001hnw.1_Missense_Mutation_p.P42S	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	42	Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		AGGACCTGGGGGACCTGGGTG	0.537													13	31					0	0	0.001368	0	0
SUSD4	55061	broad.mit.edu	37	1	223465797	223465797	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:223465797G>A	uc001hnx.2	-	2	979	c.345C>T	c.(343-345)TCC>TCT	p.S115S	SUSD4_uc001hny.3_Silent_p.S115S|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Silent_p.S115S|SUSD4_uc010pux.1_Intron	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	115	Sushi 1.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		GCACACAGATGGAATTATCAC	0.488													44	90					0	0	0.003610	0	0
C1orf65	164127	broad.mit.edu	37	1	223568241	223568241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:223568241G>A	uc001hoa.2	+	1	1527	c.1424G>A	c.(1423-1425)AGG>AAG	p.R475K		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	475	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		CGCGAGCTGAGGGAGAAGGCC	0.597													14	20					0	0	0.002450	0	0
C1orf65	164127	broad.mit.edu	37	1	223568531	223568531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:223568531G>A	uc001hoa.2	+	1	1817	c.1714G>A	c.(1714-1716)GTG>ATG	p.V572M		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	572	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GGAGCAGAGGGTGCAGCACAT	0.532													20	37					0	0	0.000958	0	0
TP53BP2	7159	broad.mit.edu	37	1	224009059	224009059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:224009059G>A	uc010pvb.1	-	2	330	c.38C>T	c.(37-39)ACC>ATC	p.T13I	TP53BP2_uc001hod.2_5'UTR	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	7					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		GAGATACACGGTAAGAAACAT	0.413													96	182					0	0	0.003610	0	0
LEFTY1	10637	broad.mit.edu	37	1	226075259	226075259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:226075259G>A	uc001hpo.2	-	3	647	c.577C>T	c.(577-579)CCC>TCC	p.P193S	LEFTY1_uc010pvj.1_Missense_Mutation_p.A301V|LEFTY1_uc009xej.1_3'UTR	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	193					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					GGCTGCCGGGGCCGGCTCAGC	0.687													12	10					0	0	0.004007	0	0
PARP1	142	broad.mit.edu	37	1	226555974	226555974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:226555974G>A	uc001hqd.3	-	16	2374	c.2203C>T	c.(2203-2205)CGC>TGC	p.R735C		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	735	PARP alpha-helical.				cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		GTGTAAAAGCGATTTGAGAGA	0.567								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					19	32					0	0	0.002780	0	0
ITPKB	3707	broad.mit.edu	37	1	226924433	226924433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:226924433G>A	uc010pvo.1	-	2	1067	c.727C>T	c.(727-729)CCT>TCT	p.P243S	ITPKB_uc001hqh.2_Missense_Mutation_p.P243S	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	243							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				GATCCTGTAGGGGCAGCCCGG	0.592													52	52					0	0	0.003610	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227182600	227182600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:227182600G>A	uc001hqr.2	-	35	5895	c.4952C>T	c.(4951-4953)TCC>TTC	p.S1651F	CDC42BPA_uc001hqq.2_Missense_Mutation_p.S950F|CDC42BPA_uc001hqs.2_Missense_Mutation_p.S1570F|CDC42BPA_uc009xes.2_Missense_Mutation_p.S1623F|CDC42BPA_uc010pvs.1_Missense_Mutation_p.S1631F|CDC42BPA_uc001hqp.2_Missense_Mutation_p.S869F	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	1664					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				CTCTGACGGGGAGGGCATGGG	0.587													49	50					0	0	0.003610	0	0
WNT3A	89780	broad.mit.edu	37	1	228238550	228238550	+	Silent	SNP	C	T	T	rs141170201		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:228238550C>T	uc001hrq.1	+	3	585	c.507C>T	c.(505-507)TTC>TTT	p.F169F	WNT3A_uc001hrp.1_Silent_p.F169F	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	169					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				CTCGGGAGTTCGCCGACGCCC	0.672													24	14					0	0	0.003954	0	0
OBSCN	84033	broad.mit.edu	37	1	228482023	228482023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:228482023G>A	uc009xez.1	+	42	11346	c.11302G>A	c.(11302-11304)GAG>AAG	p.E3768K	OBSCN_uc001hsn.2_Missense_Mutation_p.E3768K|OBSCN_uc001hsq.1_Missense_Mutation_p.E1024K	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3768	Ig-like 38.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GTCCAGGTGTGAGCTGCAGAT	0.632													31	65					0	0	0.003271	0	0
TRIM11	81559	broad.mit.edu	37	1	228582509	228582509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:228582509G>A	uc001hss.2	-	6	1559	c.1304C>T	c.(1303-1305)TCG>TTG	p.S435L	TRIM11_uc010pvx.1_Missense_Mutation_p.S434L	NM_145214	NP_660215	Q96F44	TRI11_HUMAN	tripartite motif-containing 11	435	B30.2/SPRY.				response to virus	cytoplasm|nucleus	protein binding|zinc ion binding			lung(3)|ovary(1)	4		Prostate(94;0.0724)				CAGCGTCCCCGAGAAGGGGAT	0.627													7	17					0	0	0.001984	0	0
AGT	183	broad.mit.edu	37	1	230841680	230841680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:230841680G>A	uc001hty.3	-	3	1631	c.1123C>T	c.(1123-1125)CGG>TGG	p.R375W	AGT_uc009xfe.2_Missense_Mutation_p.R375W|AGT_uc009xff.2_Missense_Mutation_p.R347W	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	375			R -> Q (in RTD).		activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	GGCTCCTACCGGGGAGATAGT	0.607													70	59					0	0	0.003610	0	0
C1orf198	84886	broad.mit.edu	37	1	230979283	230979283	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:230979283G>A	uc001hub.2	-	3	788	c.744C>T	c.(742-744)CTC>CTT	p.L248L	C1orf198_uc009xfh.1_Silent_p.L118L|C1orf198_uc001huc.1_Silent_p.L31L|C1orf198_uc001hud.1_Silent_p.L210L	NM_032800	NP_116189	Q9H425	CA198_HUMAN	hypothetical protein LOC84886 isoform 1	248											0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				GCTCCTGACGGAGGGTGCTGG	0.642													22	15					0	0	0.003330	0	0
C1orf131	128061	broad.mit.edu	37	1	231374694	231374694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:231374694G>A	uc001hun.1	-	2	396	c.359C>T	c.(358-360)TCC>TTC	p.S120F	C1orf131_uc001hul.2_Missense_Mutation_p.S120F|C1orf131_uc001hum.2_Missense_Mutation_p.S120F|C1orf131_uc010pwd.1_Missense_Mutation_p.S120F|C1orf131_uc001huo.1_Missense_Mutation_p.S120F|GNPAT_uc009xfo.1_5'Flank|GNPAT_uc001hup.3_5'Flank|GNPAT_uc009xfp.2_5'Flank	NM_152379	NP_689592	Q8NDD1	CA131_HUMAN	hypothetical protein LOC128061	120										central_nervous_system(1)|skin(1)	2	Breast(184;0.0871)	all_cancers(173;0.2)|Prostate(94;0.183)				GTTCTTTAGGGAAGAGGGAGG	0.448													45	27					0	0	0.003610	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232650684	232650684	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:232650684G>A	uc001hvg.2	-	1	560	c.402C>T	c.(400-402)TTC>TTT	p.F134F		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	134					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				TGGCCTCCACGAAGTCCAGAT	0.502													48	83					0	0	0.003610	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394784	233394784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:233394784G>A	uc001hvl.2	-	5	1059	c.824C>T	c.(823-825)CCG>CTG	p.P275L	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	275						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ACTCCCCCACGGCTGGAAAGA	0.522													13	37					0	0	0.001855	0	0
PCNXL2	80003	broad.mit.edu	37	1	233398892	233398892	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:233398892C>T	uc001hvl.2	-	2	406	c.171G>A	c.(169-171)GCG>GCA	p.A57A		NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	57	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ATACAATGATCGCATTTGGAG	0.338													11	25					0	0	0.000673	0	0
KIAA1804	84451	broad.mit.edu	37	1	233515107	233515107	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:233515107G>A	uc001hvt.3	+	9	2616	c.2355G>A	c.(2353-2355)GGG>GGA	p.G785G	KIAA1804_uc001hvu.3_Silent_p.G231G	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	785					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CCACCTGTGGGGAGGCCAGCA	0.597													17	43					0	0	0.000743	0	0
TARBP1	6894	broad.mit.edu	37	1	234569190	234569190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:234569190G>A	uc001hwd.2	-	14	2360	c.2360C>T	c.(2359-2361)TCC>TTC	p.S787F		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	787					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			ATGCTGAATGGATGCATTTTT	0.388													36	29					0	0	0.005524	0	0
NID1	4811	broad.mit.edu	37	1	236189432	236189432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:236189432G>A	uc001hxo.2	-	8	1850	c.1748C>T	c.(1747-1749)TCC>TTC	p.S583F	NID1_uc009xgd.2_Missense_Mutation_p.S583F	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	583	Nidogen G2 beta-barrel.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	GGTGGAGGAGGAAGTGATCAC	0.567													18	31					0	0	0.000958	0	0
ACTN2	88	broad.mit.edu	37	1	236898975	236898975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:236898975G>A	uc001hyf.2	+	8	942	c.738G>A	c.(736-738)ATG>ATA	p.M246I	ACTN2_uc001hyg.2_Missense_Mutation_p.M1I|ACTN2_uc009xgi.1_Intron|ACTN2_uc010pxu.1_Intron	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	246	CH 2.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GAGCCATCATGACGTACGTCT	0.522													12	20					0	0	0.003163	0	0
RYR2	6262	broad.mit.edu	37	1	237632407	237632407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:237632407G>A	uc001hyl.1	+	17	1748	c.1628G>A	c.(1627-1629)GGA>GAA	p.G543E		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	543	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTAATTAGAGGAAATCGTAAA	0.373													35	46					0	0	0.004289	0	0
RYR2	6262	broad.mit.edu	37	1	237875071	237875071	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:237875071C>T	uc001hyl.1	+	71	10377	c.10257C>T	c.(10255-10257)TTC>TTT	p.F3419F	RYR2_uc010pxz.1_Silent_p.F374F	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3419					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGCAGAACTTCGTTGTACAGA	0.323													22	18					0	0	0.001882	0	0
RYR2	6262	broad.mit.edu	37	1	237947370	237947370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:237947370G>A	uc001hyl.1	+	90	12478	c.12358G>A	c.(12358-12360)GAA>AAA	p.E4120K	RYR2_uc010pya.1_Missense_Mutation_p.E535K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4120					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GACTTTTCTGGAATTAGCAGA	0.512													9	32					0	0	0.004482	0	0
CHRM3	1131	broad.mit.edu	37	1	240071117	240071117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:240071117G>A	uc001hyp.2	+	5	1145	c.366G>A	c.(364-366)ATG>ATA	p.M122I		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	122	Helical; Name=2; (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TCATTTCAATGAATCTGTTTA	0.473													47	42					0	0	0.003610	0	0
FMN2	56776	broad.mit.edu	37	1	240371804	240371804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:240371804G>A	uc010pyd.1	+	5	3917	c.3692G>A	c.(3691-3693)GGA>GAA	p.G1231E	FMN2_uc010pye.1_Missense_Mutation_p.G1235E	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1231	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCTGGGACAGGAATCCCACCG	0.617													5	8					0	0	0.000602	0	0
FMN2	56776	broad.mit.edu	37	1	240497240	240497240	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:240497240T>C	uc010pyd.1	+	12	4863	c.4638T>C	c.(4636-4638)TTT>TTC	p.F1546F	FMN2_uc010pye.1_Silent_p.F1550F|FMN2_uc010pyf.1_Silent_p.F192F|FMN2_uc010pyg.1_Silent_p.F142F	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1546	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TCCGAAATTTTGATGAGGTAA	0.294													7	43					0	0	0.001984	0	0
FMN2	56776	broad.mit.edu	37	1	240601478	240601478	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:240601478G>A	uc010pyd.1	+	16	5253	c.5028G>A	c.(5026-5028)TGG>TGA	p.W1676*	FMN2_uc010pye.1_Nonsense_Mutation_p.W1680*|FMN2_uc010pyg.1_Nonsense_Mutation_p.W272*	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1676	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AAGACTTCTGGAAGAAAGAGA	0.388													55	56					0	0	0.003610	0	0
RGS7	6000	broad.mit.edu	37	1	240969562	240969562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:240969562C>T	uc001hyv.2	-	15	1477	c.1147G>A	c.(1147-1149)GAA>AAA	p.E383K	RGS7_uc010pyh.1_Missense_Mutation_p.E357K|RGS7_uc010pyj.1_Missense_Mutation_p.E299K|RGS7_uc001hyu.2_Missense_Mutation_p.E383K|RGS7_uc009xgn.1_Missense_Mutation_p.E330K|RGS7_uc001hyw.2_Missense_Mutation_p.E383K|RGS7_uc001hyt.2_Missense_Mutation_p.E215K	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	383	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TGCCATATTTCCTGAACTCTT	0.473													56	40					0	0	0.003610	0	0
RGS7	6000	broad.mit.edu	37	1	241261968	241261968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:241261968G>A	uc001hyv.2	-	3	503	c.173C>T	c.(172-174)TCT>TTT	p.S58F	RGS7_uc010pyh.1_Missense_Mutation_p.S32F|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.S58F|RGS7_uc009xgn.1_Missense_Mutation_p.S58F|RGS7_uc001hyw.2_Missense_Mutation_p.S58F	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	58	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			AGACTTACCAGAGAAGACGCT	0.398													14	34					0	0	0.003163	0	0
KMO	8564	broad.mit.edu	37	1	241753371	241753371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:241753371C>T	uc009xgp.2	+	13	1221	c.1156C>T	c.(1156-1158)CTT>TTT	p.L386F	KMO_uc001hyy.2_Missense_Mutation_p.L373F|KMO_uc009xgo.1_Missense_Mutation_p.L386F	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	386	Helical; (Potential).				pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			GGAGAGATTTCTTCATGCGAT	0.378													69	57					0	0	0.003610	0	0
OPN3	23596	broad.mit.edu	37	1	241761205	241761205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:241761205G>A	uc001hza.2	-	3	933	c.788C>T	c.(787-789)ACC>ATC	p.T263I	OPN3_uc001hzb.2_RNA|OPN3_uc001hzc.2_RNA	NM_014322	NP_055137	Q9H1Y3	OPN3_HUMAN	opsin 3	263	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|visual perception	integral to plasma membrane	G-protein coupled photoreceptor activity				0	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			GACCAGGAAGGTGAATATCAT	0.393													25	57					0	0	0.005443	0	0
CHML	1122	broad.mit.edu	37	1	241797474	241797474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:241797474G>A	uc001hzd.2	-	1	1759	c.1595C>T	c.(1594-1596)CCG>CTG	p.P532L	OPN3_uc001hza.2_Intron|OPN3_uc001hzb.2_Intron|OPN3_uc001hzc.2_Intron	NM_001821	NP_001812	P26374	RAE2_HUMAN	choroideremia-like Rab escort protein 2	532					intracellular protein transport|visual perception	Rab-protein geranylgeranyltransferase complex	GTPase activator activity|Rab geranylgeranyltransferase activity			ovary(4)|skin(2)	6	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			TTCAGTATACGGAGTGAATAA	0.383													16	55					0	0	0.000743	0	0
PLD5	200150	broad.mit.edu	37	1	242428750	242428750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:242428750C>T	uc001hzn.1	-	4	623	c.496G>A	c.(496-498)GGT>AGT	p.G166S	PLD5_uc001hzl.3_Missense_Mutation_p.G104S|PLD5_uc001hzm.3_5'UTR|PLD5_uc001hzo.1_Missense_Mutation_p.G74S			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	166						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			AGACGTTGACCCTGGAAAAAA	0.323													13	43					0	0	0.001368	0	0
ZNF238	10472	broad.mit.edu	37	1	244218166	244218166	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:244218166C>T	uc001iae.2	+	1	1585	c.1063C>T	c.(1063-1065)CTG>TTG	p.L355L	ZNF238_uc001iad.3_Silent_p.L364L|ZNF238_uc001iaf.1_3'UTR	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	355	Interaction with DNMT3A.				negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			GGAGAGCAGTCTGCTCCCCTA	0.612													10	29					0	0	0.000978	0	0
KIF26B	55083	broad.mit.edu	37	1	245847663	245847663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:245847663C>T	uc001ibf.1	+	11	2827	c.2387C>T	c.(2386-2388)TCG>TTG	p.S796L	KIF26B_uc001ibg.1_Missense_Mutation_p.S414L|KIF26B_uc001ibh.1_Missense_Mutation_p.S38L	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	796					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			CAGATTGCATCGAGAGTCTTG	0.597													11	14					0	0	0.000673	0	0
TFB2M	64216	broad.mit.edu	37	1	246714589	246714589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:246714589G>A	uc001ibn.2	-	5	846	c.721C>T	c.(721-723)CCC>TCC	p.P241S	TFB2M_uc010pys.1_RNA	NM_022366	NP_071761	Q9H5Q4	TFB2M_HUMAN	transcription factor B2, mitochondrial	241					positive regulation of transcription, DNA-dependent|transcription initiation from mitochondrial promoter	mitochondrial nucleoid	protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity|transcription cofactor activity			ovary(1)	1	all_cancers(71;4.25e-05)|all_epithelial(71;4.92e-06)|Ovarian(71;0.0254)|all_lung(81;0.0272)|Breast(184;0.0318)|Lung NSC(105;0.0376)		OV - Ovarian serous cystadenocarcinoma(106;0.00358)			GGATTTCCGGGATCTGCCATT	0.308													33	63					0	0	0.004289	0	0
AHCTF1	25909	broad.mit.edu	37	1	247063402	247063402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247063402G>A	uc001ibu.1	-	9	1404	c.1397C>T	c.(1396-1398)CCC>CTC	p.P466L	AHCTF1_uc001ibv.1_Missense_Mutation_p.P475L|AHCTF1_uc009xgs.1_5'Flank	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	466	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AAACTGCTCGGGAGGTGGATA	0.353													120	196					0	0	0.003610	0	0
NLRP3	114548	broad.mit.edu	37	1	247588671	247588671	+	Silent	SNP	C	T	T	rs34698071	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247588671C>T	uc001icr.2	+	5	2064	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	NLRP3_uc001ics.2_Silent_p.F642F|NLRP3_uc001icu.2_Silent_p.F642F|NLRP3_uc001icw.2_Silent_p.F642F|NLRP3_uc001icv.2_Silent_p.F642F|NLRP3_uc010pyw.1_Silent_p.F640F|NLRP3_uc001ict.1_Silent_p.F640F	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	642					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AGGAGGACTTCGTGCAAAGGG	0.468													14	25					0	0	0.001855	0	0
OR2W5	441932	broad.mit.edu	37	1	247655249	247655249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247655249C>T	uc001icz.1	+	1	820	c.820C>T	c.(820-822)CCT>TCT	p.P274S		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	274					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			AGGGGAAGTTCCTGACTCTCT	0.512													40	37					0	0	0.002522	0	0
OR2C3	81472	broad.mit.edu	37	1	247695727	247695727	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247695727G>A	uc009xgy.2	-	2	449	c.87C>T	c.(85-87)TTC>TTT	p.F29F	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AGACAACTATGAAGAGGACAG	0.463													38	32					0	0	0.001287	0	0
OR2G2	81470	broad.mit.edu	37	1	247751856	247751856	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247751856C>T	uc010pyy.1	+	1	195	c.195C>T	c.(193-195)TTC>TTT	p.F65F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGTATTTCTTCCTTTCTCATC	0.448													82	76					0	0	0.003610	0	0
OR2G2	81470	broad.mit.edu	37	1	247751937	247751937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247751937G>A	uc010pyy.1	+	1	276	c.276G>A	c.(274-276)ATG>ATA	p.M92I		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGGAACCCATGAAAACTATCG	0.522													49	55					0	0	0.003610	0	0
OR2G2	81470	broad.mit.edu	37	1	247751993	247751993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247751993G>A	uc010pyy.1	+	1	332	c.332G>A	c.(331-333)GGA>GAA	p.G111E		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CATGCCCTGGGATCCACTGAG	0.527													66	61					0	0	0.003610	0	0
OR2G2	81470	broad.mit.edu	37	1	247752441	247752441	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247752441C>T	uc010pyy.1	+	1	780	c.780C>T	c.(778-780)TTC>TTT	p.F260F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	260	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			ccatcatcttcatgtatctgc	0.373													46	35					0	0	0.003610	0	0
OR2G3	81469	broad.mit.edu	37	1	247768910	247768910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247768910C>T	uc010pyz.1	+	1	23	c.23C>T	c.(22-24)TCC>TTC	p.S8F		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AATGAGAGTTCCCTAATGGAT	0.468													26	52					0	0	0.004656	0	0
OR2G3	81469	broad.mit.edu	37	1	247768917	247768917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247768917G>A	uc010pyz.1	+	1	30	c.30G>A	c.(28-30)ATG>ATA	p.M10I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTTCCCTAATGGATTTCATCC	0.463													29	55					0	0	0.001512	0	0
OR2G3	81469	broad.mit.edu	37	1	247769053	247769053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247769053C>T	uc010pyz.1	+	1	166	c.166C>T	c.(166-168)CAT>TAT	p.H56Y		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TCCCCCTCTTCATACCCCAAT	0.433													108	97					0	0	0.003610	0	0
OR2G3	81469	broad.mit.edu	37	1	247769715	247769715	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247769715C>T	uc010pyz.1	+	1	828	c.828C>T	c.(826-828)CTC>CTT	p.L276L		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TTATCTCCCTCTTCTACACCA	0.438													31	34					0	0	0.001786	0	0
OR13G1	441933	broad.mit.edu	37	1	247835855	247835855	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247835855C>T	uc001idi.1	-	1	489	c.489G>A	c.(487-489)TTG>TTA	p.L163L		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CACAGAAAGTCAACCTCATGA	0.473													33	32					0	0	0.003271	0	0
OR13G1	441933	broad.mit.edu	37	1	247836113	247836113	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247836113C>T	uc001idi.1	-	1	231	c.231G>A	c.(229-231)AAG>AAA	p.K77K		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	77	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TCCCCAGCATCTTCGGTATGA	0.458													12	33					0	0	0.000978	0	0
OR6F1	343169	broad.mit.edu	37	1	247875599	247875599	+	Silent	SNP	G	A	A	rs144440883	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:247875599G>A	uc001idj.1	-	1	459	c.459C>T	c.(457-459)TTC>TTT	p.F153F		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CAATGGCCACGAAACCACACA	0.587													37	25					0	0	0.005524	0	0
OR11L1	391189	broad.mit.edu	37	1	248004713	248004713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248004713C>T	uc001idn.1	-	1	486	c.486G>A	c.(484-486)ATG>ATA	p.M162I		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ACCTGGAAATCATCAGGGAAG	0.557													29	66					0	0	0.001271	0	0
TRIM58	25893	broad.mit.edu	37	1	248039444	248039444	+	Missense_Mutation	SNP	G	A	A	rs143805378		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248039444G>A	uc001ido.2	+	6	1162	c.1114G>A	c.(1114-1116)GAA>AAA	p.E372K	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	372	B30.2/SPRY.					intracellular	zinc ion binding	p.E372K(1)		skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AAGAAAGGGGGAAACCACGCC	0.562													38	40					0	0	0.001287	0	0
OR2L1P	26247	broad.mit.edu	37	1	248154241	248154241	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248154241C>T	uc001idv.1	+	1	673	c.429C>T	c.(427-429)GTC>GTT	p.V143V	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						TCCTTGCTGTCTACCACATGC	0.483													27	49					0	0	0.001061	0	0
OR2L2	26246	broad.mit.edu	37	1	248201644	248201644	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248201644C>T	uc001idw.2	+	1	171	c.75C>T	c.(73-75)TTC>TTT	p.F25F	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	25	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTGGCCTTTTCGTATTCACCC	0.378													63	104					0	0	0.003610	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285750	248285750	+	Missense_Mutation	SNP	G	A	A	rs140949928		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248285750G>A	uc001idy.1	+	1	313	c.313G>A	c.(313-315)GAA>AAA	p.E105K		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						TGGGTCTCGGGAAATAGCCCA	0.403													47	125					0	0	0.003610	0	0
OR2M5	127059	broad.mit.edu	37	1	248309187	248309187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248309187G>A	uc010pze.1	+	1	738	c.738G>A	c.(736-738)ATG>ATA	p.M246I		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			CTCACCTCATGGTGGTGGGAA	0.493													54	135					0	0	0.003610	0	0
OR2T12	127064	broad.mit.edu	37	1	248458170	248458170	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248458170G>A	uc010pzj.1	-	1	711	c.711C>T	c.(709-711)GCC>GCT	p.A237A		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	237	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			AAGAGCAGGTGGCAAAGGCCT	0.527													35	51					0	0	0.003755	0	0
OR14C36	127066	broad.mit.edu	37	1	248512712	248512712	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248512712C>T	uc010pzl.1	+	1	636	c.636C>T	c.(634-636)ATC>ATT	p.I212I		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TCATCTTTATCATCAGGTCTT	0.512													53	45					0	0	0.003610	0	0
OR2T6	254879	broad.mit.edu	37	1	248551788	248551788	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248551788G>A	uc001iei.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACAGTCTGAGGAACAGGGATG	0.458													17	37					0	0	0.001523	0	0
OR2T2	401992	broad.mit.edu	37	1	248616137	248616137	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248616137C>T	uc001iek.1	+	1	39	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCACTAACTTCGTCCTCACAG	0.507													44	115					0	0	0.003610	0	0
OR2T34	127068	broad.mit.edu	37	1	248737485	248737485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248737485G>A	uc001iep.1	-	1	574	c.574C>T	c.(574-576)CTC>TTC	p.L192F		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAGCAGGAGAGCTTCAGCAGG	0.512													66	54					0	0	0.003610	0	0
OR2T10	127069	broad.mit.edu	37	1	248756281	248756281	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248756281G>A	uc010pzn.1	-	1	789	c.789C>T	c.(787-789)AGC>AGT	p.S263S		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTTGGTAGGAGCTGGGGAGCA	0.448													12	27					0	0	0.000978	0	0
OR2T10	127069	broad.mit.edu	37	1	248756989	248756989	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248756989G>A	uc010pzn.1	-	1	81	c.81C>T	c.(79-81)CTC>CTT	p.L27L		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TAAGCAAGCAGAGGCGGCCAG	0.478													27	29					0	0	0.001061	0	0
OR2T11	127077	broad.mit.edu	37	1	248790028	248790028	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248790028G>A	uc001ier.1	-	1	402	c.402C>T	c.(400-402)AAC>AAT	p.N134N		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACTTCTTGCGGTTCATCAGGA	0.542													30	31					0	0	0.001512	0	0
OR2T27	403239	broad.mit.edu	37	1	248813789	248813789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248813789G>A	uc010pzo.1	-	1	397	c.397C>T	c.(397-399)CCT>TCT	p.P133S		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATGAGGACAGGATAGTGCAGA	0.547													12	23					0	0	0.003163	0	0
OR2T27	403239	broad.mit.edu	37	1	248814048	248814048	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248814048G>A	uc010pzo.1	-	1	138	c.138C>T	c.(136-138)ATC>ATT	p.I46I		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	46	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGATGAGAATGATCTTGACCA	0.532													6	27					0	0	0.000673	0	0
ADARB2	105	broad.mit.edu	37	10	1262912	1262912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:1262912G>A	uc009xhq.2	-	7	2035	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	554	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		GTCCGTGCAGGACATGGTGAT	0.682													6	11					0	0	0.001984	0	0
IL2RA	3559	broad.mit.edu	37	10	6067912	6067912	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:6067912C>T	uc001iiz.1	-	2	300	c.141G>A	c.(139-141)TTG>TTA	p.L47L	IL2RA_uc009xih.1_Silent_p.L47L|IL2RA_uc001ija.1_Silent_p.L9L	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	47	Sushi 1.|Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	ATTCACAGTTCAACATGGTTC	0.488													25	41					0	0	0.004656	0	0
PRKCQ	5588	broad.mit.edu	37	10	6470232	6470232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:6470232C>T	uc001ijj.1	-	18	2133	c.2058G>A	c.(2056-2058)ATG>ATA	p.M686I	PRKCQ_uc009xim.1_Missense_Mutation_p.M623I|PRKCQ_uc001iji.1_Missense_Mutation_p.M719I|PRKCQ_uc009xin.1_Missense_Mutation_p.M650I|PRKCQ_uc010qax.1_Missense_Mutation_p.M561I	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	686	AGC-kinase C-terminal.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						TATTCTGGTCCATGCTGTTGA	0.468													92	127					0	0	0.003610	0	0
ITIH5	80760	broad.mit.edu	37	10	7679434	7679434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:7679434C>T	uc001ijq.2	-	5	488	c.409G>A	c.(409-411)GGG>AGG	p.G137R	ITIH5_uc001ijr.1_Missense_Mutation_p.G137R	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	137	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ATTTCAGTCCCCTTCTCTCTG	0.542													13	35					0	0	0.004990	0	0
TAF3	83860	broad.mit.edu	37	10	8006646	8006646	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:8006646C>T	uc010qbd.1	+	3	1173	c.1173C>T	c.(1171-1173)ATC>ATT	p.I391I		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	391					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						AGGCCTCTATCGATGCTGTGA	0.463													26	44					0	0	0.001061	0	0
UPF2	26019	broad.mit.edu	37	10	12071456	12071456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:12071456G>A	uc001ila.2	-	2	907	c.433C>T	c.(433-435)CGT>TGT	p.R145C	UPF2_uc001ilb.2_Missense_Mutation_p.R145C|UPF2_uc001ilc.2_Missense_Mutation_p.R145C|UPF2_uc009xiz.1_Missense_Mutation_p.R145C	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	145					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				TTTTTGCTACGAAGTTCCTTT	0.373													213	294					0	0	0.003610	0	0
DHTKD1	55526	broad.mit.edu	37	10	12162788	12162788	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:12162788C>T	uc001ild.3	+	17	2760	c.2661C>T	c.(2659-2661)CTC>CTT	p.L887L		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	887					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			ACTTATAGCTCCGTCTGGTGG	0.473													105	195					0	0	0.003610	0	0
CCDC3	83643	broad.mit.edu	37	10	12940599	12940599	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:12940599C>T	uc001ilq.1	-	3	764	c.630G>A	c.(628-630)CTG>CTA	p.L210L	CCDC3_uc009xjb.1_RNA|CCDC3_uc001ilr.2_RNA|CCDC3_uc009xjc.1_RNA	NM_031455	NP_113643	Q9BQI4	CCDC3_HUMAN	coiled-coil domain containing 3 precursor	210	Potential.					endoplasmic reticulum|extracellular region				ovary(1)	1		Ovarian(717;0.0822)	BRCA - Breast invasive adenocarcinoma(52;0.163)			TGCGCTTCTCCAGGGTGGCCA	0.617													26	35					0	0	0.001786	0	0
PHYH	5264	broad.mit.edu	37	10	13336432	13336432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:13336432G>A	uc001imf.2	-	4	498	c.410C>T	c.(409-411)CCC>CTC	p.P137L	PHYH_uc001ime.2_Missense_Mutation_p.P37L|PHYH_uc001img.2_Missense_Mutation_p.P118L	NM_006214	NP_006205	O14832	PAHX_HUMAN	phytanoyl-CoA 2-hydroxylase isoform a precursor	137					fatty acid alpha-oxidation|nervous system development	peroxisomal matrix	electron carrier activity|L-ascorbic acid binding|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|phytanoyl-CoA dioxygenase activity|protein binding				0		Ovarian(717;0.0448)			Antihemophilic Factor(DB00025)|Vitamin C(DB00126)	TCTGACCTCGGGGAGAGTGCA	0.428													14	30					0	0	0.004007	0	0
ITGA8	8516	broad.mit.edu	37	10	15647748	15647748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:15647748G>A	uc001ioc.1	-	19	1945	c.1945C>T	c.(1945-1947)CCT>TCT	p.P649S	ITGA8_uc010qcb.1_Missense_Mutation_p.P634S	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	649	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TTCAAGTCAGGAACACACAGA	0.388													16	29					0	0	0.004990	0	0
PTER	9317	broad.mit.edu	37	10	16528519	16528519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:16528519C>T	uc001iog.1	+	4	808	c.601C>T	c.(601-603)CAT>TAT	p.H201Y	PTER_uc001ioh.1_Missense_Mutation_p.H201Y|PTER_uc001ioi.1_Missense_Mutation_p.H201Y|PTER_uc009xjp.1_Missense_Mutation_p.H201Y	NM_030664	NP_109589	Q96BW5	PTER_HUMAN	phosphotriesterase related	201		Divalent metal cation 2 (By similarity).			catabolic process		hydrolase activity, acting on ester bonds|zinc ion binding			ovary(2)	2						TGTTATTATCCATCCTGGACG	0.498													30	43					0	0	0.001786	0	0
CUBN	8029	broad.mit.edu	37	10	17088080	17088080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:17088080C>T	uc001ioo.2	-	24	3395	c.3343G>A	c.(3343-3345)GAA>AAA	p.E1115K		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1115	CUB 6.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGTGATTTTTCATAGCCTCCA	0.323													21	23					0	0	0.004656	0	0
CUBN	8029	broad.mit.edu	37	10	17127727	17127727	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:17127727A>T	uc001ioo.2	-	16	2031	c.1979T>A	c.(1978-1980)CTT>CAT	p.L660H		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	660	CUB 2.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CTTCCCAAGAAGGGGGTCCTG	0.443													19	30					0	0	0.000958	0	0
CACNB2	783	broad.mit.edu	37	10	18439852	18439852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:18439852G>A	uc001ipr.2	+	2	221	c.161G>A	c.(160-162)GGA>GAA	p.G54E	CACNB2_uc009xjz.1_Missense_Mutation_p.G54E|CACNB2_uc001ips.2_Missense_Mutation_p.G54E|CACNB2_uc001ipt.2_Missense_Mutation_p.G54E|CACNB2_uc010qcl.1_RNA|CACNB2_uc001ipu.2_Missense_Mutation_p.G26E|CACNB2_uc001ipv.2_Missense_Mutation_p.G26E|CACNB2_uc009xka.1_Missense_Mutation_p.G26E	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	54					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AGATTTAAAGGATCTGATGGA	0.303													34	67					0	0	0.002836	0	0
NEBL	10529	broad.mit.edu	37	10	21115400	21115400	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:21115400C>T	uc001iqi.2	-	18	2242	c.1845G>A	c.(1843-1845)AAG>AAA	p.K615K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	615	Nebulin 17.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GCTGATTTTTCTTCACTCGTT	0.313													64	112					0	0	0.003610	0	0
NEBL	10529	broad.mit.edu	37	10	21141544	21141544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:21141544C>T	uc001iqi.2	-	10	1335	c.938G>A	c.(937-939)GGA>GAA	p.G313E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	313	Nebulin 8.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						ATGATACATTCCTTTGTTTTC	0.398													10	22					0	0	0.000443	0	0
NEBL	10529	broad.mit.edu	37	10	21148728	21148728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:21148728C>T	uc001iqi.2	-	8	1109	c.712G>A	c.(712-714)GAA>AAA	p.E238K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	238	Nebulin 6.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TCCTTCATTTCATTATCAAAT	0.299													16	33					0	0	0.004007	0	0
KIAA1217	56243	broad.mit.edu	37	10	24832808	24832808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:24832808G>A	uc001iru.3	+	19	5012	c.4609G>A	c.(4609-4611)GAA>AAA	p.E1537K	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Missense_Mutation_p.E1220K|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Missense_Mutation_p.E373K	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1537					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGGAGGACAGGAAATGAACAG	0.527													18	22					0	0	0.000958	0	0
KIAA1217	56243	broad.mit.edu	37	10	24835169	24835169	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:24835169C>T	uc001iru.3	+	21	6151	c.5748C>T	c.(5746-5748)ATC>ATT	p.I1916I	KIAA1217_uc001irs.2_Silent_p.I1237I|KIAA1217_uc001irt.3_Silent_p.I1282I|KIAA1217_uc010qcy.1_Silent_p.I1347I|KIAA1217_uc010qcz.1_Silent_p.I1322I|KIAA1217_uc001irw.2_3'UTR|KIAA1217_uc001irz.2_3'UTR|KIAA1217_uc001irx.2_3'UTR|KIAA1217_uc001iry.2_3'UTR	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1916					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CCAGGACCATCCATACTCCCA	0.358													25	53					0	0	0.001061	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24873957	24873957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:24873957G>A	uc001isb.2	-	26	5748	c.5261C>T	c.(5260-5262)TCC>TTC	p.S1754F	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1753	Interaction with CTNNA1.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						CTGTTTTTCGGATTCGCCTCT	0.438													64	90					0	0	0.003610	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24874769	24874769	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:24874769G>A	uc001isb.2	-	26	4936	c.4449C>T	c.(4447-4449)CCC>CCT	p.P1483P	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1482					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						TTGTCGTGCTGGGGTCTTTCC	0.428													102	106					0	0	0.003610	0	0
GPR158	57512	broad.mit.edu	37	10	25887227	25887227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:25887227C>T	uc001isj.2	+	11	2732	c.2672C>T	c.(2671-2673)ACT>ATT	p.T891I	GPR158_uc001isk.2_Missense_Mutation_p.T266I	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	891	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GAGAAGAAAACTGGGCACCCA	0.507													35	62					0	0	0.003271	0	0
MYO3A	53904	broad.mit.edu	37	10	26310491	26310491	+	Silent	SNP	C	T	T	rs111860916		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:26310491C>T	uc001isn.2	+	8	1005	c.645C>T	c.(643-645)TCC>TCT	p.S215S	MYO3A_uc009xko.1_Silent_p.S215S|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Silent_p.S215S|MYO3A_uc001ism.2_Silent_p.S215S	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	215	Protein kinase.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						ACACTTGGTCCCTGGGTATCA	0.463													21	42					0	0	0.002780	0	0
MYO3A	53904	broad.mit.edu	37	10	26414399	26414399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:26414399G>A	uc001isn.2	+	19	2336	c.1976G>A	c.(1975-1977)GGA>GAA	p.G659E	MYO3A_uc009xko.1_Missense_Mutation_p.G659E|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	659	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GTCACTAGAGGAGAAACAATT	0.423													37	46					0	0	0.004878	0	0
MYO3A	53904	broad.mit.edu	37	10	26457766	26457766	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:26457766G>A	uc001isn.2	+	28	3597	c.3237G>A	c.(3235-3237)CAG>CAA	p.Q1079Q	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1079	IQ 1.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity	p.Q1079L(1)		ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AAAAAATACAGGAGAAAAGGA	0.323													32	49					0	0	0.003271	0	0
MYO3A	53904	broad.mit.edu	37	10	26459364	26459364	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:26459364C>T	uc001isn.2	+	29	3654	c.3294C>T	c.(3292-3294)GTC>GTT	p.V1098V	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1098	IQ 2.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GACACCTTGTCAGGAAACAAA	0.323													11	17					0	0	0.000978	0	0
PTCHD3	374308	broad.mit.edu	37	10	27703007	27703007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:27703007C>T	uc001itu.2	-	1	291	c.173G>A	c.(172-174)GGA>GAA	p.G58E		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	58					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CGCCAGGGGTCCTGAGGGTTC	0.701													27	25					0	0	0.001786	0	0
MKX	283078	broad.mit.edu	37	10	28024257	28024257	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:28024257A>G	uc001ity.3	-	4	620	c.395T>C	c.(394-396)GTT>GCT	p.V132A	MKX_uc001itx.3_Missense_Mutation_p.V132A	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	132	Homeobox; TALE-type.				muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGGCTGTCGAACGGTATTCTT	0.373													35	61					0	0	0.003755	0	0
MPP7	143098	broad.mit.edu	37	10	28420556	28420556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:28420556G>A	uc001iua.1	-	8	784	c.380C>T	c.(379-381)CCT>CTT	p.P127L	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.P127L|MPP7_uc009xla.2_Missense_Mutation_p.P127L|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	127					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						AATATCTTCAGGCATAGGAGG	0.383													31	32					0	0	0.001786	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316266	30316266	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:30316266C>T	uc001iux.2	-	2	2870	c.2811G>A	c.(2809-2811)GTG>GTA	p.V937V	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.V799V|KIAA1462_uc009xle.1_Silent_p.V937V	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	937										ovary(4)	4						CACCTTCTTCCACGCGAAAGC	0.607													24	28					0	0	0.002780	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317386	30317386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:30317386C>T	uc001iux.2	-	2	1750	c.1691G>A	c.(1690-1692)GGG>GAG	p.G564E	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.G426E|KIAA1462_uc009xle.1_Missense_Mutation_p.G564E	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	564										ovary(4)	4						GGTCCGAGTCCCAGTTTGGAA	0.458													43	63					0	0	0.002522	0	0
KIAA1462	57608	broad.mit.edu	37	10	30336624	30336624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:30336624C>T	uc001iux.2	-	1	177	c.118G>A	c.(118-120)GGC>AGC	p.G40S	KIAA1462_uc001iuy.2_Missense_Mutation_p.G40S|KIAA1462_uc001iuz.2_5'UTR|KIAA1462_uc009xle.1_Missense_Mutation_p.G40S	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	40										ovary(4)	4						AGGCCCTGGCCTGCTCGTGTC	0.637													19	26					0	0	0.000958	0	0
MTPAP	55149	broad.mit.edu	37	10	30658255	30658255	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:30658255C>T	uc001ivb.3	-	3	332	c.-1040_splice	c.e3+1		LOC729668_uc001ivd.2_Splice_Site|LOC729668_uc001ivf.1_Splice_Site	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor						cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						TCAGGTCTCACCTCCTCTGAC	0.393													5	15					0	0	0.001168	0	0
LYZL2	119180	broad.mit.edu	37	10	30915168	30915168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:30915168C>T	uc001ivk.2	-	3	315	c.302G>A	c.(301-303)AGC>AAC	p.S101N		NM_183058	NP_898881	Q7Z4W2	LYZL2_HUMAN	lysozyme-like 2	55					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Prostate(175;0.151)				GTTGTAGCCGCTCTCATAATA	0.557													13	27					0	0	0.003163	0	0
ZNF438	220929	broad.mit.edu	37	10	31134408	31134408	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:31134408G>A	uc010qdz.1	-	8	2404	c.1969C>T	c.(1969-1971)CAG>TAG	p.Q657*	ZNF438_uc001ivn.2_Nonsense_Mutation_p.Q608*|ZNF438_uc010qdy.1_Nonsense_Mutation_p.Q647*|ZNF438_uc001ivo.3_Nonsense_Mutation_p.Q221*|ZNF438_uc009xlg.2_Nonsense_Mutation_p.Q657*|ZNF438_uc001ivp.3_Nonsense_Mutation_p.Q647*|ZNF438_uc010qea.1_Nonsense_Mutation_p.Q657*|ZNF438_uc010qeb.1_Nonsense_Mutation_p.Q657*	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	657					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				GCAAAAGACTGAGCAGTAATC	0.428													27	37					0	0	0.001271	0	0
ZEB1	6935	broad.mit.edu	37	10	31809275	31809275	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:31809275C>T	uc001ivs.3	+	7	1075	c.1012C>T	c.(1012-1014)CAA>TAA	p.Q338*	ZEB1_uc001ivr.3_Nonsense_Mutation_p.Q120*|ZEB1_uc010qee.1_Nonsense_Mutation_p.Q120*|ZEB1_uc010qef.1_Nonsense_Mutation_p.Q120*|ZEB1_uc009xlj.1_Nonsense_Mutation_p.Q264*|ZEB1_uc010qeg.1_Nonsense_Mutation_p.Q197*|ZEB1_uc009xlk.1_Nonsense_Mutation_p.Q120*|ZEB1_uc001ivt.3_Nonsense_Mutation_p.Q120*|ZEB1_uc001ivu.3_Nonsense_Mutation_p.Q339*|ZEB1_uc001ivv.3_Nonsense_Mutation_p.Q318*|ZEB1_uc010qeh.1_Nonsense_Mutation_p.Q271*|ZEB1_uc009xlo.1_Nonsense_Mutation_p.Q321*|ZEB1_uc009xlp.2_Nonsense_Mutation_p.Q322*	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	338					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TAAACCCCTTCAAGAACAACT	0.423													11	23					0	0	0.000673	0	0
ZEB1	6935	broad.mit.edu	37	10	31809368	31809368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:31809368C>T	uc001ivs.3	+	7	1168	c.1105C>T	c.(1105-1107)CCT>TCT	p.P369S	ZEB1_uc001ivr.3_Missense_Mutation_p.P151S|ZEB1_uc010qee.1_Missense_Mutation_p.P151S|ZEB1_uc010qef.1_Missense_Mutation_p.P151S|ZEB1_uc009xlj.1_Missense_Mutation_p.P295S|ZEB1_uc010qeg.1_Missense_Mutation_p.P228S|ZEB1_uc009xlk.1_Missense_Mutation_p.P151S|ZEB1_uc001ivt.3_Missense_Mutation_p.P151S|ZEB1_uc001ivu.3_Missense_Mutation_p.P370S|ZEB1_uc001ivv.3_Missense_Mutation_p.P349S|ZEB1_uc010qeh.1_Missense_Mutation_p.P302S|ZEB1_uc009xlo.1_Missense_Mutation_p.P352S|ZEB1_uc009xlp.2_Missense_Mutation_p.P353S	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	369					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				CTGTTCAACCCCTTTACAAAA	0.443													13	24					0	0	0.001368	0	0
ZEB1	6935	broad.mit.edu	37	10	31810200	31810200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:31810200C>T	uc001ivs.3	+	7	2000	c.1937C>T	c.(1936-1938)TCT>TTT	p.S646F	ZEB1_uc001ivr.3_Missense_Mutation_p.S428F|ZEB1_uc010qee.1_Missense_Mutation_p.S428F|ZEB1_uc010qef.1_Missense_Mutation_p.S428F|ZEB1_uc009xlj.1_Missense_Mutation_p.S572F|ZEB1_uc010qeg.1_Missense_Mutation_p.S505F|ZEB1_uc009xlk.1_Missense_Mutation_p.S428F|ZEB1_uc001ivt.3_Missense_Mutation_p.S428F|ZEB1_uc001ivu.3_Missense_Mutation_p.S647F|ZEB1_uc001ivv.3_Missense_Mutation_p.S626F|ZEB1_uc010qeh.1_Missense_Mutation_p.S579F|ZEB1_uc009xlo.1_Missense_Mutation_p.S629F|ZEB1_uc009xlp.2_Missense_Mutation_p.S630F	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	646					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GAACCATCTTCTCCTGAACCA	0.408													21	24					0	0	0.001882	0	0
ZEB1	6935	broad.mit.edu	37	10	31810519	31810519	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:31810519C>T	uc001ivs.3	+	7	2319	c.2256C>T	c.(2254-2256)ATC>ATT	p.I752I	ZEB1_uc001ivr.3_Silent_p.I534I|ZEB1_uc010qee.1_Silent_p.I534I|ZEB1_uc010qef.1_Silent_p.I534I|ZEB1_uc009xlj.1_Silent_p.I678I|ZEB1_uc010qeg.1_Silent_p.I611I|ZEB1_uc009xlk.1_Silent_p.I534I|ZEB1_uc001ivt.3_Silent_p.I534I|ZEB1_uc001ivu.3_Silent_p.I753I|ZEB1_uc001ivv.3_Silent_p.I732I|ZEB1_uc010qeh.1_Silent_p.I685I|ZEB1_uc009xlo.1_Silent_p.I735I|ZEB1_uc009xlp.2_Silent_p.I736I	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	752					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GGTCAACTATCACTAGTGTTT	0.423													17	23					0	0	0.004990	0	0
ZEB1	6935	broad.mit.edu	37	10	31816045	31816045	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:31816045G>A	uc001ivs.3	+	9	3291	c.3228G>A	c.(3226-3228)GAG>GAA	p.E1076E	ZEB1_uc001ivr.3_Silent_p.E858E|ZEB1_uc010qee.1_Silent_p.E858E|ZEB1_uc010qef.1_Silent_p.E858E|ZEB1_uc001ivt.3_Silent_p.E858E|ZEB1_uc001ivu.3_Silent_p.E1077E|ZEB1_uc001ivv.3_Silent_p.E1056E|ZEB1_uc010qeh.1_Silent_p.E1009E|ZEB1_uc009xlp.2_Silent_p.E1060E	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	1076	Glu-rich (acidic).				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				aagaagaagaggtagaagagg	0.149													6	6					0	0	0.001984	0	0
ITGB1	3688	broad.mit.edu	37	10	33190554	33190554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:33190554G>A	uc001iws.3	-	16	2477	c.2341C>T	c.(2341-2343)CCT>TCT	p.P781S	ITGB1_uc001iwp.3_Silent_p.I813I|ITGB1_uc001iwq.3_Silent_p.I819I|ITGB1_uc001iwr.3_3'UTR|ITGB1_uc001iwt.3_Missense_Mutation_p.P781S	NM_133376	NP_596867	P05556	ITB1_HUMAN	integrin beta 1 isoform 1A precursor	781	Cytoplasmic (Potential).				axon guidance|blood coagulation|cell-cell adhesion mediated by integrin|cell-matrix adhesion|cellular defense response|homophilic cell adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|leukocyte migration|positive regulation of apoptosis|regulation of immune response	cell surface|cleavage furrow|focal adhesion|melanosome|neuromuscular junction|ruffle|sarcolemma	identical protein binding|protein heterodimerization activity|receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(717;1.34e-05)|Breast(68;0.0634)				TTATAAATAGGATTTTCACCC	0.338													34	38					0	0	0.002852	0	0
NRP1	8829	broad.mit.edu	37	10	33469267	33469267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:33469267C>T	uc001iwx.3	-	17	3032	c.2509G>A	c.(2509-2511)GGA>AGA	p.G837R	NRP1_uc001iwv.3_Missense_Mutation_p.G820R|NRP1_uc009xlz.2_Missense_Mutation_p.G831R|NRP1_uc001iww.3_Missense_Mutation_p.G649R|NRP1_uc001iwy.3_Missense_Mutation_p.G830R	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	837	Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TCACCTTCTCCTTCACCTTCG	0.493													43	70					0	0	0.003214	0	0
PARD3	56288	broad.mit.edu	37	10	34636976	34636976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:34636976C>T	uc010qej.1	-	15	2135	c.2135G>A	c.(2134-2136)CGA>CAA	p.R712Q	PARD3_uc010qek.1_Missense_Mutation_p.R712Q|PARD3_uc010qel.1_Missense_Mutation_p.R712Q|PARD3_uc010qem.1_Missense_Mutation_p.R699Q|PARD3_uc010qen.1_Missense_Mutation_p.R699Q|PARD3_uc010qeo.1_Missense_Mutation_p.R699Q|PARD3_uc010qep.1_Missense_Mutation_p.R655Q|PARD3_uc010qeq.1_Missense_Mutation_p.R655Q|PARD3_uc001ixo.1_Missense_Mutation_p.R429Q|PARD3_uc001ixp.1_Missense_Mutation_p.R577Q|PARD3_uc001ixq.1_Missense_Mutation_p.R699Q|PARD3_uc001ixr.1_Missense_Mutation_p.R712Q|PARD3_uc001ixt.1_Missense_Mutation_p.R533Q|PARD3_uc001ixu.1_Missense_Mutation_p.R655Q|PARD3_uc001ixs.1_Missense_Mutation_p.R365Q	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	712	Interacts with PRKCZ (By similarity).				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				GGAAATTCTTCGTTCTCTATC	0.507													16	21					0	0	0.000743	0	0
PARD3	56288	broad.mit.edu	37	10	34673118	34673118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:34673118G>A	uc010qej.1	-	8	955	c.955C>T	c.(955-957)CGT>TGT	p.R319C	PARD3_uc010qek.1_Missense_Mutation_p.R319C|PARD3_uc010qel.1_Missense_Mutation_p.R319C|PARD3_uc010qem.1_Missense_Mutation_p.R319C|PARD3_uc010qen.1_Missense_Mutation_p.R319C|PARD3_uc010qeo.1_Missense_Mutation_p.R319C|PARD3_uc010qep.1_Missense_Mutation_p.R275C|PARD3_uc010qeq.1_Missense_Mutation_p.R275C|PARD3_uc001ixo.1_Missense_Mutation_p.R49C|PARD3_uc001ixp.1_Missense_Mutation_p.R184C|PARD3_uc001ixq.1_Missense_Mutation_p.R319C|PARD3_uc001ixr.1_Missense_Mutation_p.R319C|PARD3_uc001ixt.1_Missense_Mutation_p.R140C|PARD3_uc001ixu.1_Missense_Mutation_p.R275C|PARD3_uc001ixs.1_5'UTR	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	319	PDZ 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				TCATTCTCACGAAAAAGATTT	0.378													34	43					0	0	0.003271	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37421210	37421210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:37421210G>A	uc001iza.1	+	4	484	c.385G>A	c.(385-387)GAG>AAG	p.E129K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	185	ANK 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GAAAAGAAGTGAGCAAATTGT	0.294													52	72					0	0	0.003610	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37425564	37425564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:37425564G>A	uc001iza.1	+	6	716	c.617G>A	c.(616-618)CGA>CAA	p.R206Q		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	262	ANK 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GAATATATACGAAAATTATCT	0.269													6	19					0	0	0.003080	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37478487	37478487	+	Splice_Site	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:37478487T>A	uc001iza.1	+	25	2443	c.2344_splice	c.e25+2	p.E782_splice		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AATTAGAAGGTAAGAACCGTT	0.323													36	74					0	0	0.001287	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37505242	37505242	+	Silent	SNP	G	A	A	rs140013037	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:37505242G>A	uc001iza.1	+	32	2934	c.2835G>A	c.(2833-2835)AAG>AAA	p.K945K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1001	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TACTGAAAAAGAAACTGTCAG	0.343													34	51					0	0	0.002836	0	0
ZNF248	57209	broad.mit.edu	37	10	38121875	38121875	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:38121875G>A	uc001izd.1	-	6	907	c.408C>T	c.(406-408)CCC>CCT	p.P136P	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Silent_p.P136P	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	136					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATATTTTATAGGGATAATTTC	0.318													30	45					0	0	0.001061	0	0
BMS1	9790	broad.mit.edu	37	10	43279930	43279930	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:43279930C>T	uc001jaj.2	+	2	446	c.88C>T	c.(88-90)CAG>TAG	p.Q30*		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	30					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						GCAGGATCTCCAGCTAGGAGA	0.478													37	31					0	0	0.004878	0	0
ZNF485	220992	broad.mit.edu	37	10	44112749	44112749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:44112749C>T	uc010qfc.1	+	5	1452	c.1258C>T	c.(1258-1260)CCC>TCC	p.P420S	ZNF485_uc010qfd.1_Missense_Mutation_p.P329S	NM_145312	NP_660355	Q8NCK3	ZN485_HUMAN	zinc finger protein 485	420	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAAGCTTTTCCCCGAAGTTC	0.398													14	24					0	0	0.002450	0	0
SYT15	83849	broad.mit.edu	37	10	46967484	46967484	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:46967484T>C	uc001jea.2	-	4	746	c.593A>G	c.(592-594)CAA>CGA	p.Q198R	SYT15_uc001jdz.2_Missense_Mutation_p.Q198R|SYT15_uc001jeb.2_Missense_Mutation_p.Q76R|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	198	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						GGTCTTGGATTGGAGGAAGCG	0.607													16	86					0	0	0.004990	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999814	46999814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:46999814G>A	uc001jec.2	+	3	1069	c.934G>A	c.(934-936)GAT>AAT	p.D312N	GPRIN2_uc010qfq.1_Missense_Mutation_p.D75N	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	312											0						TAGGACCAAAGATGTGTGGAC	0.642													7	67					0	0	0.003080	0	0
GDF2	2658	broad.mit.edu	37	10	48414412	48414412	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:48414412G>A	uc001jfa.1	-	2	619	c.456C>T	c.(454-456)CTC>CTT	p.L152L		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	152					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						AGGAGACATAGAGTCGGAGCT	0.498													11	29					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	10	48968612	48968612	+	RNA	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:48968612A>G	uc001jgc.1	+	3		c.1280A>G								full-length cDNA clone CS0DI009YC01 of Placenta Cot 25-normalized of Homo sapiens (human).																		CTAGCAAAGAAGGGCTTTATT	0.249													20	26					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	10	49239415	49239415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:49239415G>A	uc001jgd.2	-	1	244	c.85C>T	c.(85-87)CGT>TGT	p.R29C						RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		TCCCGGTCACGAACCTGGTGC	0.587													13	49					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	10	49313220	49313220	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:49313220G>A	uc009xny.1	-	3		c.496C>T								Homo sapiens cDNA, FLJ99963.																		AGGGGAGAGAGCCTGTGATGG	0.473													27	63					0	0	0.001485	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49663121	49663121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:49663121G>A	uc001jgt.2	-	6	1013	c.716C>T	c.(715-717)CCC>CTC	p.P239L	ARHGAP22_uc001jgs.2_Missense_Mutation_p.P149L|ARHGAP22_uc001jgu.2_Missense_Mutation_p.P255L|ARHGAP22_uc010qgl.1_Missense_Mutation_p.P196L|ARHGAP22_uc010qgm.1_Missense_Mutation_p.P245L|ARHGAP22_uc001jgv.2_5'UTR	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	239	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						CACGGGCTCGGGGAGCTCCCG	0.662													6	17					0	0	0.001168	0	0
C10orf72	196740	broad.mit.edu	37	10	50315705	50315705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:50315705C>T	uc001jhf.2	-	2	420	c.391G>A	c.(391-393)GAA>AAA	p.E131K	C10orf72_uc001jhh.2_Missense_Mutation_p.E131K	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	131	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						CTGCTGATTTCCTGGACTCTG	0.617													24	33					0	0	0.002780	0	0
OGDHL	55753	broad.mit.edu	37	10	50944459	50944459	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:50944459T>G	uc001jie.2	-	21	2840	c.2698A>C	c.(2698-2700)AAG>CAG	p.K900Q	OGDHL_uc009xog.2_Missense_Mutation_p.K927Q|OGDHL_uc010qgt.1_Missense_Mutation_p.K843Q|OGDHL_uc010qgu.1_Missense_Mutation_p.K691Q	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	900					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CTCCGCTCCTTCACCAGGTCA	0.612													34	63					0	0	0.004878	0	0
OGDHL	55753	broad.mit.edu	37	10	50955095	50955095	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:50955095C>A	uc001jie.2	-	9	1289	c.1147G>T	c.(1147-1149)GGA>TGA	p.G383*	OGDHL_uc009xog.2_Nonsense_Mutation_p.G410*|OGDHL_uc010qgt.1_Nonsense_Mutation_p.G326*|OGDHL_uc010qgu.1_Nonsense_Mutation_p.G174*|OGDHL_uc009xoh.2_Nonsense_Mutation_p.G174*	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	383					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TGGGCATCTCCACGGTAGAAC	0.642													19	30					1.10923e-09	1.91787e-09	0.002780	1	0
OGDHL	55753	broad.mit.edu	37	10	50960259	50960259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:50960259C>T	uc001jie.2	-	5	656	c.514G>A	c.(514-516)GAG>AAG	p.E172K	OGDHL_uc009xog.2_Missense_Mutation_p.E199K|OGDHL_uc010qgt.1_Missense_Mutation_p.E115K|OGDHL_uc010qgu.1_5'UTR|OGDHL_uc009xoh.2_5'UTR	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	172					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						AGCTGGAACTCCTTATCAAGG	0.617													14	27					0	0	0.004007	0	0
PCDH15	65217	broad.mit.edu	37	10	55566490	55566490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:55566490C>T	uc010qhq.1	-	36	5293	c.4898G>A	c.(4897-4899)AGG>AAG	p.R1633K	PCDH15_uc010qhr.1_Missense_Mutation_p.R1628K	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCTTTTCAGCCTGTTCCTTAG	0.448										HNSCC(58;0.16)			53	125					0	0	0.003610	0	0
PCDH15	65217	broad.mit.edu	37	10	55570336	55570336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:55570336C>T	uc010qhs.1	-	36	4893	c.4498G>A	c.(4498-4500)GAA>AAA	p.E1500K	PCDH15_uc010qhq.1_Missense_Mutation_p.E1493K|PCDH15_uc010qhr.1_Missense_Mutation_p.E1488K|PCDH15_uc010qht.1_Missense_Mutation_p.E1493K|PCDH15_uc010qhu.1_Silent_p.R1511R	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCATATTCTTCCTCAGCTTCA	0.393										HNSCC(58;0.16)			71	86					0	0	0.003610	0	0
PCDH15	65217	broad.mit.edu	37	10	55582262	55582262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:55582262G>A	uc001jju.1	-	33	5619	c.5224C>T	c.(5224-5226)CCT>TCT	p.P1742S	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.P1739S|PCDH15_uc010qhw.1_Missense_Mutation_p.P1702S|PCDH15_uc010qhx.1_Missense_Mutation_p.P1673S|PCDH15_uc010qhy.1_Missense_Mutation_p.P1749S|PCDH15_uc010qhz.1_Missense_Mutation_p.P1744S|PCDH15_uc010qia.1_Missense_Mutation_p.P1722S|PCDH15_uc010qib.1_Missense_Mutation_p.P1719S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1742	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CAGGCAGAAGGAGAGATGTTT	0.209										HNSCC(58;0.16)			7	9					0	0	0.001984	0	0
PCDH15	65217	broad.mit.edu	37	10	55582378	55582378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:55582378G>A	uc001jju.1	-	33	5503	c.5108C>T	c.(5107-5109)TCA>TTA	p.S1703L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.S1700L|PCDH15_uc010qhw.1_Missense_Mutation_p.S1663L|PCDH15_uc010qhx.1_Missense_Mutation_p.S1634L|PCDH15_uc010qhy.1_Missense_Mutation_p.S1710L|PCDH15_uc010qhz.1_Missense_Mutation_p.S1705L|PCDH15_uc010qia.1_Missense_Mutation_p.S1683L|PCDH15_uc010qib.1_Missense_Mutation_p.S1680L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1703	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACAAGGCCTTGAAGGAGAAAG	0.383										HNSCC(58;0.16)			20	39					0	0	0.001523	0	0
PCDH15	65217	broad.mit.edu	37	10	55587175	55587175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:55587175C>T	uc001jju.1	-	32	4740	c.4345G>A	c.(4345-4347)GAA>AAA	p.E1449K	PCDH15_uc010qhq.1_Missense_Mutation_p.E1454K|PCDH15_uc010qhr.1_Missense_Mutation_p.E1449K|PCDH15_uc010qhs.1_Missense_Mutation_p.E1461K|PCDH15_uc010qht.1_Missense_Mutation_p.E1456K|PCDH15_uc010qhu.1_Missense_Mutation_p.E1449K|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.E1446K|PCDH15_uc010qhw.1_Missense_Mutation_p.E1409K|PCDH15_uc010qhx.1_Missense_Mutation_p.E1378K|PCDH15_uc010qhy.1_Missense_Mutation_p.E1454K|PCDH15_uc010qhz.1_Missense_Mutation_p.E1449K|PCDH15_uc010qia.1_Missense_Mutation_p.E1427K|PCDH15_uc010qib.1_Missense_Mutation_p.E1424K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1449	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CCAAGTTCTTCATAGAGATGC	0.418										HNSCC(58;0.16)			19	32					0	0	0.000743	0	0
PCDH15	65217	broad.mit.edu	37	10	55587287	55587287	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:55587287C>T	uc001jju.1	-	32	4628	c.4233G>A	c.(4231-4233)AAG>AAA	p.K1411K	PCDH15_uc010qhq.1_Silent_p.K1416K|PCDH15_uc010qhr.1_Silent_p.K1411K|PCDH15_uc010qhs.1_Silent_p.K1423K|PCDH15_uc010qht.1_Silent_p.K1418K|PCDH15_uc010qhu.1_Silent_p.K1411K|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.K1408K|PCDH15_uc010qhw.1_Silent_p.K1371K|PCDH15_uc010qhx.1_Silent_p.K1340K|PCDH15_uc010qhy.1_Silent_p.K1416K|PCDH15_uc010qhz.1_Silent_p.K1411K|PCDH15_uc010qia.1_Silent_p.K1389K|PCDH15_uc010qib.1_Silent_p.K1386K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1411	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTCGTGCAGTCTTTGTACACT	0.393										HNSCC(58;0.16)			26	40					0	0	0.001271	0	0
PCDH15	65217	broad.mit.edu	37	10	55626549	55626549	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:55626549C>T	uc001jju.1	-	27	3965	c.3570G>A	c.(3568-3570)GAG>GAA	p.E1190E	PCDH15_uc010qhq.1_Silent_p.E1195E|PCDH15_uc010qhr.1_Silent_p.E1190E|PCDH15_uc010qhs.1_Silent_p.E1202E|PCDH15_uc010qht.1_Silent_p.E1197E|PCDH15_uc010qhu.1_Silent_p.E1190E|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.E1190E|PCDH15_uc010qhw.1_Silent_p.E1153E|PCDH15_uc010qhx.1_Silent_p.E1119E|PCDH15_uc010qhy.1_Silent_p.E1195E|PCDH15_uc010qhz.1_Silent_p.E1190E|PCDH15_uc010qia.1_Silent_p.E1168E|PCDH15_uc010qib.1_Silent_p.E1168E	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1190	Cadherin 11.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTTCTTTTCCCTCTTTAATTG	0.363										HNSCC(58;0.16)			33	47					0	0	0.005524	0	0
PCDH15	65217	broad.mit.edu	37	10	55721651	55721652	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:55721651_55721652CC>TT	uc001jju.1	-	22	3264_3265	c.2869_2870GG>AA	c.(2869-2871)GGA>AAA	p.G957K	PCDH15_uc010qhq.1_Missense_Mutation_p.G962K|PCDH15_uc010qhr.1_Missense_Mutation_p.G957K|PCDH15_uc010qhs.1_Missense_Mutation_p.G969K|PCDH15_uc010qht.1_Missense_Mutation_p.G964K|PCDH15_uc010qhu.1_Missense_Mutation_p.G957K|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.G957K|PCDH15_uc010qhw.1_Missense_Mutation_p.G920K|PCDH15_uc010qhx.1_Missense_Mutation_p.G886K|PCDH15_uc010qhy.1_Missense_Mutation_p.G962K|PCDH15_uc010qhz.1_Missense_Mutation_p.G957K|PCDH15_uc010qia.1_Missense_Mutation_p.G935K|PCDH15_uc010qib.1_Missense_Mutation_p.G935K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	957	Extracellular (Potential).|Cadherin 9.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGCAGGTAATCCCtaaaataaa	0.312										HNSCC(58;0.16)			20	35					0	0	0.004672	0	0
PCDH15	65217	broad.mit.edu	37	10	56089365	56089365	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:56089365G>A	uc001jju.1	-	7	1091	c.696C>T	c.(694-696)ATC>ATT	p.I232I	PCDH15_uc010qhq.1_Silent_p.I237I|PCDH15_uc010qhr.1_Silent_p.I232I|PCDH15_uc010qhs.1_Silent_p.I237I|PCDH15_uc010qht.1_Silent_p.I232I|PCDH15_uc010qhu.1_Silent_p.I232I|PCDH15_uc001jjv.1_Silent_p.I210I|PCDH15_uc010qhv.1_Silent_p.I232I|PCDH15_uc010qhw.1_Intron|PCDH15_uc010qhx.1_Silent_p.I232I|PCDH15_uc010qhy.1_Silent_p.I237I|PCDH15_uc010qhz.1_Silent_p.I232I|PCDH15_uc010qia.1_Silent_p.I210I|PCDH15_uc010qib.1_Silent_p.I210I|PCDH15_uc001jjw.2_Silent_p.I232I	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	232	Extracellular (Potential).|Cadherin 2.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CATTAGCTTGGATTATGACAA	0.338										HNSCC(58;0.16)			54	68					0	0	0.003610	0	0
ANK3	288	broad.mit.edu	37	10	61830531	61830531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61830531C>T	uc001jky.2	-	37	10300	c.10108G>A	c.(10108-10110)GAA>AAA	p.E3370K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3370					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGGCCAAATTCATTATCTTTT	0.433													47	58					0	0	0.003214	0	0
ANK3	288	broad.mit.edu	37	10	61832647	61832647	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61832647C>T	uc001jky.2	-	37	8184	c.7992G>A	c.(7990-7992)GAG>GAA	p.E2664E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2664					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGGTGCCTTCTCCTCGGCCT	0.537													18	29					0	0	0.004990	0	0
ANK3	288	broad.mit.edu	37	10	61832682	61832682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61832682C>T	uc001jky.2	-	37	8149	c.7957G>A	c.(7957-7959)GGC>AGC	p.G2653S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2653					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCATCAGGGCCATGCTGTCTT	0.537													16	26					0	0	0.004007	0	0
ANK3	288	broad.mit.edu	37	10	61834107	61834107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61834107G>A	uc001jky.2	-	37	6724	c.6532C>T	c.(6532-6534)CCC>TCC	p.P2178S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2178					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCAGCTGAGGGATCATAGCTC	0.473													33	64					0	0	0.002445	0	0
ANK3	288	broad.mit.edu	37	10	61835021	61835021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61835021G>A	uc001jky.2	-	37	5810	c.5618C>T	c.(5617-5619)TCA>TTA	p.S1873L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1873	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AACTGGAGATGAAGTTCGACT	0.428													32	64					0	0	0.001786	0	0
ANK3	288	broad.mit.edu	37	10	61894112	61894112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61894112C>T	uc001jky.2	-	25	2950	c.2758G>A	c.(2758-2760)GAT>AAT	p.D920N	ANK3_uc001jkw.2_Missense_Mutation_p.D54N|ANK3_uc009xpa.2_Missense_Mutation_p.D54N|ANK3_uc001jkx.2_Missense_Mutation_p.D98N|ANK3_uc010qih.1_Missense_Mutation_p.D921N|ANK3_uc001jkz.3_Missense_Mutation_p.D914N|ANK3_uc001jla.1_5'UTR|ANK3_uc001jlb.1_Missense_Mutation_p.D427N	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	920					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TAAGACCTATCCGAACTGAAG	0.398													14	19					0	0	0.003163	0	0
ANK3	288	broad.mit.edu	37	10	61932885	61932885	+	Silent	SNP	G	A	A	rs150715672		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61932885G>A	uc001jky.2	-	19	2436	c.2244C>T	c.(2242-2244)TTC>TTT	p.F748F	ANK3_uc001jkx.2_5'Flank|ANK3_uc010qih.1_Silent_p.F731F|ANK3_uc001jkz.3_Silent_p.F742F|ANK3_uc001jlb.1_Silent_p.F277F|ANK3_uc001jlc.1_Silent_p.F409F	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	748	ANK 21.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding	p.F748F(1)		skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCTGGAGCAGGAAATTAACAA	0.338													14	29					0	0	0.000743	0	0
ANK3	288	broad.mit.edu	37	10	61946557	61946557	+	Silent	SNP	G	A	A	rs146438080	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61946557G>A	uc001jky.2	-	17	2193	c.2001C>T	c.(1999-2001)TCC>TCT	p.S667S	ANK3_uc010qih.1_Silent_p.S650S|ANK3_uc001jkz.3_Silent_p.S661S|ANK3_uc001jlb.1_Silent_p.S196S|ANK3_uc001jlc.1_Silent_p.S328S	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	667	ANK 19.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CGAGATGGACGGAAGCAATTC	0.522													20	24					0	0	0.001216	0	0
ANK3	288	broad.mit.edu	37	10	61967904	61967904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:61967904C>T	uc001jky.2	-	10	1276	c.1084G>A	c.(1084-1086)GAT>AAT	p.D362N	ANK3_uc010qih.1_Missense_Mutation_p.D345N|ANK3_uc001jkz.3_Missense_Mutation_p.D356N|ANK3_uc001jlb.1_5'UTR|ANK3_uc001jlc.1_Missense_Mutation_p.D23N	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	362	ANK 9.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding	p.D362G(1)		skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTGGTGACATCATCCACGGGT	0.483													11	26					0	0	0.000673	0	0
C10orf107	219621	broad.mit.edu	37	10	63519931	63519931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:63519931G>A	uc010qik.1	+	5	708	c.403G>A	c.(403-405)GAA>AAA	p.E135K		NM_173554	NP_775825	Q8IVU9	CJ107_HUMAN	hypothetical protein LOC219621	135											0	Prostate(12;0.016)					ATTGGATACGGAAATGAAGGT	0.383													19	41					0	0	0.001523	0	0
NRBF2	29982	broad.mit.edu	37	10	64913929	64913929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:64913929C>T	uc001jmj.3	+	4	1039	c.815C>T	c.(814-816)CCT>CTT	p.P272L	NRBF2_uc010qip.1_Missense_Mutation_p.P262L	NM_030759	NP_110386	Q96F24	NRBF2_HUMAN	nuclear receptor binding factor 2	272					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	cytoplasm|nucleoplasm	protein binding				0	Prostate(12;0.0119)|all_hematologic(501;0.191)					CCAGAACTTCCTCTTATGGAG	0.423													17	25					0	0	0.001216	0	0
CTNNA3	29119	broad.mit.edu	37	10	68979461	68979461	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:68979461G>A	uc009xpn.1	-	6	870	c.747C>T	c.(745-747)CTC>CTT	p.L249L	CTNNA3_uc001jmw.2_Silent_p.L249L|CTNNA3_uc001jmx.3_Silent_p.L249L|CTNNA3_uc009xpo.1_Silent_p.L109L|CTNNA3_uc001jna.2_Silent_p.L261L	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	249					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AAATTACATTGAGAGCATTCT	0.453													62	88					0	0	0.003610	0	0
DNAJC12	56521	broad.mit.edu	37	10	69571283	69571283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:69571283G>A	uc001jnb.2	-	3	464	c.296C>T	c.(295-297)ACG>ATG	p.T99M	DNAJC12_uc001jnc.2_Missense_Mutation_p.T99M	NM_021800	NP_068572	Q9UKB3	DJC12_HUMAN	J domain containing protein 1 isoform a	99					protein folding		heat shock protein binding|unfolded protein binding			breast(1)	1						GAAACCCACCGTCTTCACTGA	0.517													39	53					0	0	0.001951	0	0
TET1	80312	broad.mit.edu	37	10	70411644	70411644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:70411644C>T	uc001jok.3	+	5	4823	c.4318C>T	c.(4318-4320)CTT>TTT	p.L1440F		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1440					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						TTATACACACCTTGGGGCAGG	0.423													57	100					0	0	0.003610	0	0
TET1	80312	broad.mit.edu	37	10	70446316	70446316	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:70446316C>T	uc001jok.3	+	11	5761	c.5256C>T	c.(5254-5256)CCC>CCT	p.P1752P		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1752					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AGCCTGTTCCCCGTTCTGGAA	0.502													26	43					0	0	0.001786	0	0
STOX1	219736	broad.mit.edu	37	10	70645510	70645510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:70645510C>T	uc001jos.2	+	3	2045	c.1958C>T	c.(1957-1959)CCC>CTC	p.P653L	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Missense_Mutation_p.P543L	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	653						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						GACCGAACACCCTCTGCTTGT	0.458													46	64					0	0	0.003610	0	0
HKDC1	80201	broad.mit.edu	37	10	70987058	70987058	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:70987058G>A	uc001jpf.3	+	2	292	c.159G>A	c.(157-159)AAG>AAA	p.K53K		NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	53					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						GCCTGGCAAAGGACACCAACC	0.602													16	20					0	0	0.003163	0	0
COL13A1	1305	broad.mit.edu	37	10	71688693	71688693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:71688693G>A	uc001jpr.1	+	26	1926	c.1390G>A	c.(1390-1392)GGG>AGG	p.G464R	COL13A1_uc001jqj.1_Missense_Mutation_p.G464R|COL13A1_uc001jps.1_Missense_Mutation_p.G435R|COL13A1_uc001jpt.1_Missense_Mutation_p.G423R|COL13A1_uc001jpu.1_Missense_Mutation_p.G445R|COL13A1_uc001jpv.1_Missense_Mutation_p.G464R|COL13A1_uc001jpx.1_Missense_Mutation_p.G442R|COL13A1_uc001jpw.1_Missense_Mutation_p.G411R|COL13A1_uc001jpy.1_Missense_Mutation_p.G402R|COL13A1_uc001jpz.1_Missense_Mutation_p.G407R|COL13A1_uc001jqa.1_Missense_Mutation_p.G404R|COL13A1_uc001jqc.1_Missense_Mutation_p.G464R|COL13A1_uc001jqb.1_Missense_Mutation_p.G413R|COL13A1_uc001jql.2_Missense_Mutation_p.G464R|COL13A1_uc001jqd.1_Missense_Mutation_p.G452R|COL13A1_uc001jqe.1_Missense_Mutation_p.G447R|COL13A1_uc001jqf.1_Missense_Mutation_p.G445R|COL13A1_uc001jqg.1_Missense_Mutation_p.G442R|COL13A1_uc001jqh.1_Missense_Mutation_p.G464R|COL13A1_uc001jqi.1_Missense_Mutation_p.G464R|COL13A1_uc010qjf.1_Missense_Mutation_p.G254R|COL13A1_uc001jqk.1_Missense_Mutation_p.G302R	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	464	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	TCTCTCCTAGGGGCCTCCTGG	0.527													10	14					0	0	0.001368	0	0
LRRC20	55222	broad.mit.edu	37	10	72061176	72061176	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:72061176G>A	uc001jqx.1	-	5	711	c.489C>T	c.(487-489)ATC>ATT	p.I163I	LRRC20_uc001jqy.1_Silent_p.I107I|LRRC20_uc001jqz.1_Silent_p.I113I	NM_207119	NP_997002	Q8TCA0	LRC20_HUMAN	leucine rich repeat containing 20 isoform 1	163	LRR 5.										0						GCGGCGGGGCGATCACGCGCA	0.632													50	37					0	0	0.003610	0	0
UNC5B	219699	broad.mit.edu	37	10	73051457	73051457	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:73051457C>T	uc001jro.2	+	10	2008	c.1563C>T	c.(1561-1563)TTC>TTT	p.F521F	UNC5B_uc001jrp.2_Silent_p.F510F	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	521	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						ACACCCACTTCCTGCACCTGC	0.697													10	10					0	0	0.000978	0	0
SLC29A3	55315	broad.mit.edu	37	10	73104034	73104034	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:73104034C>A	uc001jrr.3	+	3	426	c.369C>A	c.(367-369)TTC>TTA	p.F123L	SLC29A3_uc001jrs.3_Missense_Mutation_p.F123L|SLC29A3_uc010qjq.1_Intron|SLC29A3_uc001jrt.3_Intron|SLC29A3_uc001jru.3_Intron	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	123	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						TGGCCAACTTCCTGCTTGTCA	0.572													17	38					2.39187e-15	4.14903e-15	0.001216	1	0
CDH23	64072	broad.mit.edu	37	10	73544059	73544059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:73544059C>T	uc001jrx.3	+	40	5761	c.5384C>T	c.(5383-5385)TCT>TTT	p.S1795F		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1795	Cadherin 17.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TTTGTGATCTCTCCTGTGGAG	0.607													12	22					0	0	0.003163	0	0
P4HA1	5033	broad.mit.edu	37	10	74790066	74790066	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:74790066A>G	uc010qka.1	-	11	1545	c.1211T>C	c.(1210-1212)CTA>CCA	p.L404P	P4HA1_uc001jtg.2_Missense_Mutation_p.L404P|P4HA1_uc001jth.2_Missense_Mutation_p.L404P|P4HA1_uc010qkb.1_Missense_Mutation_p.L404P|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	404						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TAGTCCTGTTAGATCTTGTAT	0.363													26	33					0	0	0.004656	0	0
AGAP5	729092	broad.mit.edu	37	10	75435613	75435613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:75435613G>A	uc009xri.2	-	8	846	c.805C>T	c.(805-807)CCG>TCG	p.P269S	AGAP5_uc001juu.3_Missense_Mutation_p.P230S	NM_001144000	NP_001137472	A6NIR3	AGAP5_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	269					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TGATTCTCCGGGGCTTTCCTC	0.537													46	62					0	0	0.003610	0	0
FUT11	170384	broad.mit.edu	37	10	75533490	75533491	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:75533490_75533491CC>GT	uc001jva.2	+	2	1294_1295	c.1251_1252CC>GT	c.(1249-1254)CCCCAC>CCGTAC	p.H418Y	FUT11_uc001juy.1_3'UTR|FUT11_uc001juz.1_Missense_Mutation_p.H418Y	NM_173540	NP_775811	Q495W5	FUT11_HUMAN	fucosyltransferase 11 (alpha (1,3)	418	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity				0	Prostate(51;0.0112)					TCTTTGAGCCCCACATTGCCCA	0.599													30	28					0	0	0.004672	0	0
CAMK2G	818	broad.mit.edu	37	10	75608340	75608340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:75608340G>A	uc001jvv.1	-	8	645	c.521C>T	c.(520-522)TCC>TTC	p.S174F	CAMK2G_uc001jvm.1_Missense_Mutation_p.S182F|CAMK2G_uc001jvo.1_Missense_Mutation_p.S182F|CAMK2G_uc001jvq.1_Missense_Mutation_p.S182F|CAMK2G_uc001jvr.1_Missense_Mutation_p.S182F|CAMK2G_uc001jvp.1_Missense_Mutation_p.S182F|CAMK2G_uc001jvs.1_Missense_Mutation_p.S182F|CAMK2G_uc001jvt.1_RNA|CAMK2G_uc001jvu.1_Missense_Mutation_p.S160F|CAMK2G_uc010qkv.1_Intron	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	182	Protein kinase.				insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					GACCTCAGGGGACAAGTAACC	0.522											OREG0020267	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	6					0	0	0.001168	0	0
ADK	132	broad.mit.edu	37	10	76468180	76468180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:76468180C>T	uc001jwi.2	+	11	1138	c.1066C>T	c.(1066-1068)CCT>TCT	p.P356S	ADK_uc010qlb.1_Missense_Mutation_p.P299S|ADK_uc001jwj.2_Missense_Mutation_p.P339S|ADK_uc010qlc.1_Missense_Mutation_p.P321S|ADK_uc001jwl.2_Missense_Mutation_p.P126S	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	356					purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	CTGCACCTTTCCTGAGAAGCC	0.473													18	31					0	0	0.004990	0	0
KCNMA1	3778	broad.mit.edu	37	10	78709044	78709044	+	Silent	SNP	G	A	A	rs2229009	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:78709044G>A	uc001jxn.2	-	22	2742	c.2565C>T	c.(2563-2565)ATC>ATT	p.I855I	KCNMA1_uc001jxj.2_Silent_p.I801I|KCNMA1_uc001jxk.1_Silent_p.I473I|KCNMA1_uc009xrt.1_Silent_p.I646I|KCNMA1_uc001jxl.1_Silent_p.I480I|KCNMA1_uc001jxo.2_Silent_p.I838I|KCNMA1_uc001jxm.2_Silent_p.I797I|KCNMA1_uc001jxq.2_Silent_p.I800I	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	855	Segment S9.|Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	TCCGGAGGCCGATCAGGGCTG	0.562													19	19					0	0	0.001216	0	0
SFTPA2	729238	broad.mit.edu	37	10	81319179	81319179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:81319179C>T	uc001kal.3	-	3	158	c.61G>A	c.(61-63)GAA>AAA	p.E21K	SFTPA2_uc001kan.3_Missense_Mutation_p.E21K|SFTPA2_uc001kam.2_RNA	NM_006926	NP_008857	Q8IWL1	SFPA2_HUMAN	RecName: Full=Pulmonary surfactant-associated protein A2;          Short=SP-A2;          Short=SP-A;          Short=PSP-A;          Short=PSPA; AltName: Full=Alveolar proteinosis protein; AltName: Full=35 kDa pulmonary surfactant-associated protein; Flags: Precursor;	21					cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			TCCTTCACTTCGCACGCAGCA	0.642									Pulmonary_Fibrosis_Idiopathic				44	71					0	0	0.003610	0	0
MBL1P	8512	broad.mit.edu	37	10	81666483	81666483	+	RNA	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:81666483T>A	uc001kbf.2	+	2		c.308T>A								Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						AGAAGAGAAATCCCAAAGCTT	0.418													32	26					0	0	0.001485	0	0
SH2D4B	387694	broad.mit.edu	37	10	82369182	82369182	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:82369182G>A	uc001kck.1	+	6	1291	c.861_splice	c.e6-1	p.R287_splice	SH2D4B_uc001kcl.1_Missense_Mutation_p.R239K|SH2D4B_uc001kcm.1_Missense_Mutation_p.R34K	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1												0			Colorectal(32;0.229)			CTCTTCAGCAGGACCTGGGAG	0.483													17	24					0	0	0.004656	0	0
NRG3	10718	broad.mit.edu	37	10	84711313	84711313	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:84711313C>T	uc001kco.2	+	5	1170	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	NRG3_uc010qlz.1_Silent_p.F380F|NRG3_uc001kcp.2_Silent_p.F160F|NRG3_uc001kcq.2_Silent_p.F31F|NRG3_uc001kcr.2_Silent_p.F31F	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	381	Helical; Note=Internal signal sequence; (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		GTGCAGCATTCTACTTCAAAA	0.383													53	49					0	0	0.003610	0	0
LRIT1	26103	broad.mit.edu	37	10	85997366	85997366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:85997366C>T	uc001kcz.1	-	2	221	c.199G>A	c.(199-201)GAG>AAG	p.E67K		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	67	LRR 1.|Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						GCCGTCCGCTCCAGGCGCAGT	0.667													23	32					0	0	0.003330	0	0
GRID1	2894	broad.mit.edu	37	10	87362269	87362269	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:87362269G>A	uc001kdl.1	-	16	2892	c.2791C>T	c.(2791-2793)CTG>TTG	p.L931L	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.L502L|uc001kdk.1_Intron	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	931	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TGCTCTGGCAGAAAGGTGCTG	0.657										Multiple Myeloma(13;0.14)			12	17					0	0	0.002450	0	0
GRID1	2894	broad.mit.edu	37	10	87362321	87362321	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:87362321G>A	uc001kdl.1	-	16	2840	c.2739C>T	c.(2737-2739)ACC>ACT	p.T913T	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.T484T|uc001kdk.1_Intron	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	913	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TCGGCTCCAAGGTCTGGGTGG	0.607										Multiple Myeloma(13;0.14)			8	14					0	0	0.000443	0	0
OPN4	94233	broad.mit.edu	37	10	88418296	88418296	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:88418296C>T	uc001kdq.2	+	4	707	c.480C>T	c.(478-480)ACC>ACT	p.T160T	OPN4_uc001kdp.2_Silent_p.T171T|OPN4_uc010qmk.1_Silent_p.T171T|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	160	Helical; Name=3; (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						CCATGATCACCCTGACGGCCA	0.627													22	26					0	0	0.001882	0	0
LDB3	11155	broad.mit.edu	37	10	88439889	88439889	+	Missense_Mutation	SNP	C	T	T	rs148638169		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:88439889C>T	uc001kdv.2	+	3	319	c.296C>T	c.(295-297)CCT>CTT	p.P99L	LDB3_uc010qml.1_Missense_Mutation_p.P99L|LDB3_uc010qmm.1_Missense_Mutation_p.P99L|LDB3_uc001kdu.2_Missense_Mutation_p.P99L|LDB3_uc009xsz.2_5'UTR|LDB3_uc001kdr.2_Missense_Mutation_p.P99L|LDB3_uc009xsy.2_Missense_Mutation_p.P99L|LDB3_uc001kds.2_Missense_Mutation_p.P99L|LDB3_uc001kdt.2_RNA	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	99						cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						GTCCAGACCCCTCTGCCGGTG	0.622													10	20					0	0	0.000978	0	0
LIPJ	142910	broad.mit.edu	37	10	90366539	90366539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:90366539G>A	uc001kff.2	+	11	1290	c.976G>A	c.(976-978)GAA>AAA	p.E326K		NM_001010939	NP_001010939	Q5W064	LIPJ_HUMAN	lipase, family member J	326					lipid catabolic process		hydrolase activity			ovary(1)	1		all_cancers(4;2.79e-10)|Prostate(4;1.68e-15)|all_epithelial(4;1.43e-09)|Colorectal(252;0.0381)|Breast(4;0.141)|Melanoma(5;0.2)|all_hematologic(4;0.222)		Colorectal(12;1.02e-05)|COAD - Colon adenocarcinoma(12;1.54e-05)		TTTACATTCTGAAATCACAAA	0.318													27	46					0	0	0.003954	0	0
LIPF	8513	broad.mit.edu	37	10	90438260	90438260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:90438260G>A	uc001kfg.1	+	10	1185	c.1019G>A	c.(1018-1020)GGT>GAT	p.G340D	LIPF_uc001kfh.1_Missense_Mutation_p.G317D|LIPF_uc010qmt.1_Missense_Mutation_p.G350D|LIPF_uc010qmu.1_Missense_Mutation_p.G307D	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	340					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		GTGTGGAACGGTGGCAAGGAC	0.448													37	76					0	0	0.005524	0	0
LIPN	643418	broad.mit.edu	37	10	90528619	90528619	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:90528619G>A	uc010qmw.1	+	5	606	c.606G>A	c.(604-606)ACG>ACA	p.T202T		NM_001102469	NP_001095939	Q5VXI9	LIPN_HUMAN	lipase-like, ab-hydrolase domain containing 4	202					lipid catabolic process	extracellular region	hydrolase activity				0		Colorectal(252;0.0161)		Colorectal(12;4.83e-05)|COAD - Colon adenocarcinoma(12;6.5e-05)		TGGGTCCTACGATCTCATTCA	0.408													21	34					0	0	0.001216	0	0
IFIT1B	439996	broad.mit.edu	37	10	91143184	91143184	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:91143184G>A	uc001kgh.2	+	2	194	c.114G>A	c.(112-114)AGG>AGA	p.R38R	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	38							binding				0						TAGAAAACAGGATCTGGGAAG	0.428													26	55					0	0	0.001061	0	0
HTR7	3363	broad.mit.edu	37	10	92509277	92509277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:92509277G>A	uc001kha.2	-	2	857	c.614C>T	c.(613-615)TCC>TTC	p.S205F	HTR7_uc001kgz.2_Missense_Mutation_p.S205F|HTR7_uc001khb.2_Missense_Mutation_p.S205F	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	205	Helical; Name=4; (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	AAGCCAGACGGAGAGAATCAT	0.502													39	53					0	0	0.001287	0	0
ANKRD1	27063	broad.mit.edu	37	10	92675338	92675338	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:92675338G>A	uc001khe.1	-	8	1059	c.811C>T	c.(811-813)CTG>TTG	p.L271L		NM_014391	NP_055206	Q15327	ANKR1_HUMAN	cardiac ankyrin repeat protein	271	ANK 4.				cellular lipid metabolic process|defense response|signal transduction		DNA binding				0		Colorectal(252;0.0475)				TACATAATCAGGAGTCGGATC	0.468													20	24					0	0	0.003330	0	0
IDE	3416	broad.mit.edu	37	10	94294532	94294532	+	Silent	SNP	C	A	A	rs144996713		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:94294532C>A	uc001kia.2	-	3	370	c.294G>T	c.(292-294)TCG>TCT	p.S98S		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	98					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTGGAGGATCCGACAATGAAC	0.338													6	263					8.12818e-05	0.000140082	0.001984	1	0
KIF11	3832	broad.mit.edu	37	10	94373212	94373212	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:94373212C>T	uc001kic.2	+	8	1176	c.868C>T	c.(868-870)CAA>TAA	p.Q290*	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	290	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						AAATATAAATCAATCCCTGTT	0.388													145	230					0	0	0.003610	0	0
KIF11	3832	broad.mit.edu	37	10	94373356	94373356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:94373356C>T	uc001kic.2	+	8	1320	c.1012C>T	c.(1012-1014)CCT>TCT	p.P338S	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	338	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						AACAATTTCTCCTGCATCTCT	0.363													94	160					0	0	0.003610	0	0
MYOF	26509	broad.mit.edu	37	10	95088581	95088581	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95088581G>A	uc001kin.2	-	45	5193	c.5070C>T	c.(5068-5070)ATC>ATT	p.I1690I	MYOF_uc001kio.2_Silent_p.I1677I|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1690	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						CTTCGGAAAGGATGGGTTGTG	0.458													72	142					0	0	0.003610	0	0
MYOF	26509	broad.mit.edu	37	10	95129435	95129435	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95129435G>A	uc001kin.2	-	25	2679	c.2556C>T	c.(2554-2556)TTC>TTT	p.F852F	MYOF_uc001kio.2_Silent_p.F839F|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	852	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TTCCTTCTGCGAAGCTGTTAA	0.453													14	29					0	0	0.000958	0	0
MYOF	26509	broad.mit.edu	37	10	95169408	95169408	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95169408C>T	uc001kin.2	-	6	645	c.522G>A	c.(520-522)TCG>TCA	p.S174S	MYOF_uc001kio.2_Silent_p.S174S|MYOF_uc001kip.3_Silent_p.S174S|MYOF_uc009xuf.2_Silent_p.S156S	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	174	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						GCTGAGCTTCCGACACCGTCC	0.557													87	125					0	0	0.003610	0	0
RBP4	5950	broad.mit.edu	37	10	95353622	95353622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95353622C>T	uc001kit.2	-	5	610	c.526G>A	c.(526-528)GAG>AAG	p.E176K		NM_006744	NP_006735	P02753	RET4_HUMAN	retinol-binding protein 4, plasma precursor	176					cardiac muscle tissue development|embryonic organ morphogenesis|embryonic retina morphogenesis in camera-type eye|embryonic skeletal system development|female genitalia morphogenesis|gluconeogenesis|glucose homeostasis|heart trabecula formation|lung development|maintenance of gastrointestinal epithelium|negative regulation of cardiac muscle cell proliferation|positive regulation of immunoglobulin secretion|positive regulation of insulin secretion|response to retinoic acid|retinol metabolic process|urinary bladder development|uterus development|vagina development	extracellular space	protein binding|retinal binding|retinol binding				0		Colorectal(252;0.122)			Vitamin A(DB00162)	AGGCACAGCTCCTCCTGCCGC	0.612													32	60					0	0	0.005524	0	0
PDE6C	5146	broad.mit.edu	37	10	95372619	95372619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95372619C>T	uc001kiu.3	+	1	275	c.137C>T	c.(136-138)TCC>TTC	p.S46F		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	46					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				CCAGTCCAGTCCAGCATGTCC	0.602													29	46					0	0	0.005443	0	0
PDE6C	5146	broad.mit.edu	37	10	95380680	95380680	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95380680C>T	uc001kiu.3	+	3	804	c.666C>T	c.(664-666)ATC>ATT	p.I222I		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	222	GAF 1.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TTGTGTCTATCATCCTAAGGC	0.383													150	241					0	0	0.003610	0	0
PDE6C	5146	broad.mit.edu	37	10	95386417	95386417	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95386417C>T	uc001kiu.3	+	6	1098	c.960C>T	c.(958-960)ATC>ATT	p.I320I		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	320	GAF 2.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TTTATAAAATCATTGATTACA	0.333													12	19					0	0	0.002450	0	0
PDE6C	5146	broad.mit.edu	37	10	95400676	95400676	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95400676G>A	uc001kiu.3	+	14	1876	c.1738_splice	c.e14-1	p.T580_splice		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C						visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TATTTTTTTAGACAGGAAGAT	0.363													13	29					0	0	0.001855	0	0
PDE6C	5146	broad.mit.edu	37	10	95422875	95422875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95422875G>A	uc001kiu.3	+	21	2596	c.2458G>A	c.(2458-2460)GAT>AAT	p.D820N		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	820					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TGATGAGTATGATGCAAAGAT	0.423													23	28					0	0	0.003330	0	0
PIPSL	266971	broad.mit.edu	37	10	95718736	95718736	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95718736C>T	uc009xuj.2	-	1	2937	c.2418G>A	c.(2416-2418)AAG>AAA	p.K806K		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						CATCCTCCTCCTTGGCTGGCT	0.527													16	23					0	0	0.000743	0	0
PIPSL	266971	broad.mit.edu	37	10	95719245	95719245	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95719245T>A	uc009xuj.2	-	1	2428	c.1909A>T	c.(1909-1911)AAG>TAG	p.K637*		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GCTGTCAGCTTTTCTGTGTTC	0.458													14	22					0	0	0.002450	0	0
PIPSL	266971	broad.mit.edu	37	10	95719845	95719845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95719845C>T	uc009xuj.2	-	1	1828	c.1309G>A	c.(1309-1311)GAA>AAA	p.E437K		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GCCTTGTGTTCCCCAGAGACC	0.512													4	10					0	0	0.000248	0	0
PLCE1	51196	broad.mit.edu	37	10	95892132	95892132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:95892132C>T	uc001kjk.2	+	3	2042	c.1408C>T	c.(1408-1410)CTC>TTC	p.L470F	PLCE1_uc010qnx.1_Missense_Mutation_p.L470F|PLCE1_uc001kjm.2_Missense_Mutation_p.L162F	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	470					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CACCGGTTCTCTCCTAGAAGC	0.478													35	43					0	0	0.003755	0	0
PLCE1	51196	broad.mit.edu	37	10	96058370	96058371	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:96058370_96058371CC>TT	uc001kjk.2	+	24	6036_6037	c.5402_5403CC>TT	c.(5401-5403)CCC>CTT	p.P1801L	PLCE1_uc010qnx.1_Missense_Mutation_p.P1785L|PLCE1_uc001kjm.2_Missense_Mutation_p.P1493L|PLCE1_uc001kjp.2_Missense_Mutation_p.P159L	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1801	PI-PLC Y-box.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AACCCGAACCCCCTCATGTTCT	0.55													31	58					0	0	0.004672	0	0
CYP2C18	1562	broad.mit.edu	37	10	96443702	96443702	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:96443702C>T	uc001kjv.3	+	1	452	c.126C>T	c.(124-126)ATC>ATT	p.I42I	CYP2C18_uc001kjw.3_Silent_p.I42I	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	42					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TTGGAAATATCCTGCAGTTAG	0.448													17	28					0	0	0.004990	0	0
CYP2C19	1557	broad.mit.edu	37	10	96580387	96580387	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:96580387G>A	uc010qnz.1	+	6	954	c.954G>A	c.(952-954)GAG>GAA	p.E318E	CYP2C19_uc010qny.1_Silent_p.E296E	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	318					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AGCACCCAGAGGTCACAGGTA	0.453													23	59					0	0	0.005443	0	0
CYP2C9	1559	broad.mit.edu	37	10	96701771	96701771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:96701771G>A	uc001kka.3	+	2	350	c.325G>A	c.(325-327)GGA>AGA	p.G109R	CYP2C9_uc009xut.2_Missense_Mutation_p.G109R|CYP2C9_uc001kjz.2_Missense_Mutation_p.G109R	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	109					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	AGCTAACAGAGGATTTGGTAG	0.512													35	55					0	0	0.004878	0	0
CYP2C8	1558	broad.mit.edu	37	10	96798654	96798654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:96798654C>T	uc001kkb.2	-	8	1386	c.1291G>A	c.(1291-1293)GGA>AGA	p.G431R	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.G361R|CYP2C8_uc010qob.1_Missense_Mutation_p.G345R|CYP2C8_uc010qoc.1_Missense_Mutation_p.G329R|CYP2C8_uc010qod.1_3'UTR	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	431					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TTTCTATTACCTGCTGAGAAA	0.378													17	31					0	0	0.002299	0	0
CYP2C8	1558	broad.mit.edu	37	10	96824557	96824557	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:96824557C>T	uc001kkb.2	-	4	737	c.642G>A	c.(640-642)CAG>CAA	p.Q214Q	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Silent_p.Q144Q|CYP2C8_uc010qob.1_Silent_p.Q128Q|CYP2C8_uc010qoc.1_Silent_p.Q112Q|CYP2C8_uc010qod.1_Silent_p.Q128Q	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	214					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TTGGCCTTACCTGGATCCATG	0.328													13	28					0	0	0.001368	0	0
C10orf129	142827	broad.mit.edu	37	10	96971651	96971651	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:96971651C>T	uc001kke.2	+	6	897	c.772C>T	c.(772-774)CAG>TAG	p.Q258*	C10orf129_uc009xuu.1_Nonsense_Mutation_p.Q168*	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	258					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GATGGATCTCCAGCCAACAGA	0.468													19	27					0	0	0.003954	0	0
PDLIM1	9124	broad.mit.edu	37	10	97028577	97028577	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:97028577C>T	uc001kkh.2	-	3	400	c.291G>A	c.(289-291)GGG>GGA	p.G97G	PDLIM1_uc001kki.2_Silent_p.G97G|PDLIM1_uc009xuv.2_Silent_p.G97G|PDLIM1_uc001kkj.1_Silent_p.G97G	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	97					response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GATGACGCTTCCCTTCCTCCG	0.443													20	35					0	0	0.005443	0	0
PDLIM1	9124	broad.mit.edu	37	10	97031403	97031403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:97031403G>A	uc001kkh.2	-	2	344	c.235C>T	c.(235-237)CTC>TTC	p.L79F	PDLIM1_uc001kki.2_Missense_Mutation_p.L79F|PDLIM1_uc009xuv.2_Missense_Mutation_p.L79F|PDLIM1_uc001kkj.1_Missense_Mutation_p.L79F	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	79	PDZ.				response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GCTACAGTGAGAGTCAAGTTG	0.448													73	105					0	0	0.003610	0	0
ZNF518A	9849	broad.mit.edu	37	10	97916531	97916531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:97916531C>T	uc001klp.2	+	6	1309	c.452C>T	c.(451-453)CCT>CTT	p.P151L	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Missense_Mutation_p.P151L|ZNF518A_uc001klr.2_Missense_Mutation_p.P151L	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	151	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		CCTTCATATCCTTGTGAAATG	0.363													86	116					0	0	0.003610	0	0
BLNK	29760	broad.mit.edu	37	10	97976426	97976426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:97976426G>A	uc001kls.3	-	7	768	c.590C>T	c.(589-591)TCA>TTA	p.S197L	BLNK_uc001kme.3_Missense_Mutation_p.S115L|BLNK_uc001klt.3_Missense_Mutation_p.S111L|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_Missense_Mutation_p.S115L|BLNK_uc001klv.3_Intron|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.S197L|BLNK_uc001kly.3_Missense_Mutation_p.S197L|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.S197L|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Missense_Mutation_p.S115L|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	197	Pro-rich.				B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		AGGTGGAGGTGAACTGCTTTC	0.383													17	29					0	0	0.004990	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98469429	98469429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:98469429C>T	uc001kmq.2	-	2	453	c.325G>A	c.(325-327)GAG>AAG	p.E109K		NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	109						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		AGGAACTCCTCGCTGTCCCGC	0.602													29	36					0	0	0.001786	0	0
SLIT1	6585	broad.mit.edu	37	10	98764506	98764506	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:98764506C>T	uc001kmw.2	-	33	3906	c.3654G>A	c.(3652-3654)CAG>CAA	p.Q1218Q		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1218	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GCACATGGCCCTGGTACAGCT	0.597													13	17					0	0	0.001855	0	0
SLIT1	6585	broad.mit.edu	37	10	98781151	98781151	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:98781151G>A	uc001kmw.2	-	26	2854	c.2602C>T	c.(2602-2604)CTA>TTA	p.L868L		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	868	LRRCT 4.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TCACAGTATAGGGGGTTGGCA	0.607													8	15					0	0	0.003080	0	0
SLIT1	6585	broad.mit.edu	37	10	98807587	98807587	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:98807587C>T	uc001kmw.2	-	16	1746	c.1494G>A	c.(1492-1494)ACG>ACA	p.T498T	SLIT1_uc009xvh.1_Silent_p.T508T	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	498					axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GGTAATCCTCCGTGCCTGCCA	0.652													8	15					0	0	0.003080	0	0
C10orf28	27291	broad.mit.edu	37	10	99968599	99968599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:99968599C>T	uc001kow.3	+	4	1023	c.728C>T	c.(727-729)TCT>TTT	p.S243F	C10orf28_uc001kox.3_Missense_Mutation_p.S243F|C10orf28_uc001koy.3_Missense_Mutation_p.S243F|C10orf28_uc009xvx.2_Missense_Mutation_p.S243F|C10orf28_uc009xvy.2_Intron|C10orf28_uc001koz.3_Intron	NM_014472	NP_055287	Q4KMY3	Q4KMY3_HUMAN	growth inhibition and differentiation related	243							nucleotide binding			large_intestine(1)|skin(1)	2		Colorectal(252;0.234)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)		AGCTCTGATTCTGAAATTGTA	0.393													20	32					0	0	0.001523	0	0
PYROXD2	84795	broad.mit.edu	37	10	100144780	100144780	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:100144780G>A	uc001kpc.2	-	15	1685	c.1599C>T	c.(1597-1599)GCC>GCT	p.A533A	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	533							oxidoreductase activity			central_nervous_system(1)	1						GCACGGGGCGGGCGAAGTAGA	0.602													9	14					0	0	0.001368	0	0
HPS1	3257	broad.mit.edu	37	10	100177480	100177480	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:100177480C>T	uc010qpf.1	-	20	2190	c.1944G>A	c.(1942-1944)AAG>AAA	p.K648K	PYROXD2_uc001kpc.2_5'Flank|PYROXD2_uc001kpd.2_5'Flank|PYROXD2_uc010qpe.1_5'Flank|HPS1_uc001kpi.1_Silent_p.K649K|HPS1_uc001kpj.1_Missense_Mutation_p.A558T|HPS1_uc001kpk.1_Silent_p.K473K	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	648	[DE]-X(4)-L-L 4.				lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		AGCGCAGGAGCTTCCTGGGGA	0.637									Hermansky-Pudlak_syndrome				16	13					0	0	0.004990	0	0
DNMBP	23268	broad.mit.edu	37	10	101640031	101640031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:101640031G>A	uc001kqj.2	-	16	4177	c.4085C>T	c.(4084-4086)TCC>TTC	p.S1362F	DNMBP_uc010qpl.1_Missense_Mutation_p.S298F|DNMBP_uc001kqg.2_Missense_Mutation_p.S650F|DNMBP_uc001kqh.2_Missense_Mutation_p.S994F	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1362	Ser-rich.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		AGACTCTGTGGAGGAGTGGCT	0.587													19	20					0	0	0.000743	0	0
DNMBP	23268	broad.mit.edu	37	10	101640083	101640083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:101640083G>A	uc001kqj.2	-	16	4125	c.4033C>T	c.(4033-4035)CCC>TCC	p.P1345S	DNMBP_uc010qpl.1_Missense_Mutation_p.P281S|DNMBP_uc001kqg.2_Missense_Mutation_p.P633S|DNMBP_uc001kqh.2_Missense_Mutation_p.P977S	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1345	SH3 5.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		GGATTGTAGGGCTTTAGGAAA	0.547													18	15					0	0	0.001216	0	0
DNMBP	23268	broad.mit.edu	37	10	101648593	101648593	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:101648593A>G	uc001kqj.2	-	12	3366	c.3274T>C	c.(3274-3276)TTC>CTC	p.F1092L	DNMBP_uc010qpl.1_Missense_Mutation_p.F28L|DNMBP_uc001kqg.2_Missense_Mutation_p.F380L|DNMBP_uc001kqh.2_Missense_Mutation_p.F724L	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1092	BAR.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		AAGTTTGTGAAGAGCTGGTCA	0.512													12	21					0	0	0.003163	0	0
SEC31B	25956	broad.mit.edu	37	10	102249868	102249868	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:102249868G>A	uc001krc.1	-	21	2964	c.2862C>T	c.(2860-2862)ACC>ACT	p.T954T	SEC31B_uc010qpo.1_Silent_p.T953T|SEC31B_uc001krd.1_Silent_p.T491T|SEC31B_uc001krf.1_Intron|SEC31B_uc001kre.1_Intron	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	954	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		GAGGGGCTGGGGTGTGGGAGA	0.617													29	43					0	0	0.003271	0	0
PAX2	5076	broad.mit.edu	37	10	102509623	102509623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:102509623C>T	uc001krk.3	+	2	714	c.164C>T	c.(163-165)TCC>TTC	p.S55F	PAX2_uc001krl.3_Missense_Mutation_p.S55F|PAX2_uc001krm.3_Missense_Mutation_p.S55F|PAX2_uc001kro.3_Missense_Mutation_p.S55F|PAX2_uc001krn.3_Missense_Mutation_p.S55F|PAX2_uc010qps.1_Missense_Mutation_p.S54F|PAX2_uc001krp.1_Missense_Mutation_p.S59F	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	55	Paired.				anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		TGTGACATCTCCCGGCAGCTG	0.687													14	8					0	0	0.004990	0	0
PAX2	5076	broad.mit.edu	37	10	102566350	102566350	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:102566350C>T	uc001krk.3	+	7	1399	c.849C>T	c.(847-849)ATC>ATT	p.I283I	PAX2_uc001krl.3_Silent_p.I260I|PAX2_uc001krm.3_Silent_p.I283I|PAX2_uc001kro.3_Silent_p.I260I|PAX2_uc001krn.3_Silent_p.I260I|PAX2_uc010qps.1_Silent_p.I259I|PAX2_uc001krp.1_Silent_p.I256I	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	283					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		CAGAGCACATCAAATCAGAAC	0.522													53	69					0	0	0.003610	0	0
LZTS2	84445	broad.mit.edu	37	10	102763772	102763772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:102763772C>T	uc001ksj.2	+	3	986	c.917C>T	c.(916-918)TCC>TTC	p.S306F	LZTS2_uc010qpw.1_Missense_Mutation_p.S306F|LZTS2_uc001ksk.2_Missense_Mutation_p.S306F|LZTS2_uc001ksl.2_Missense_Mutation_p.S306F|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	306	Ser-rich.|Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		GACAGCAGCTCCTGTGGGGAG	0.677													16	24					0	0	0.003163	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105361947	105361947	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:105361947G>A	uc001kxj.1	-	14	3084	c.2944C>T	c.(2944-2946)CGA>TGA	p.R982*	SH3PXD2A_uc010qqr.1_Intron|SH3PXD2A_uc010qqs.1_Nonsense_Mutation_p.R817*|SH3PXD2A_uc010qqt.1_Nonsense_Mutation_p.R859*|SH3PXD2A_uc009xxn.1_Nonsense_Mutation_p.R817*|SH3PXD2A_uc010qqu.1_Nonsense_Mutation_p.R925*	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	1010					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		CGGACGCCTCGGAGGCCATCA	0.672													9	24					0	0	0.000443	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105386856	105386856	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:105386856C>T	uc001kxj.1	-	9	848	c.708G>A	c.(706-708)AAG>AAA	p.K236K	SH3PXD2A_uc010qqr.1_Silent_p.K98K|SH3PXD2A_uc010qqs.1_Silent_p.K71K|SH3PXD2A_uc010qqt.1_Silent_p.K113K|SH3PXD2A_uc009xxn.1_Silent_p.K71K|SH3PXD2A_uc010qqu.1_Silent_p.K151K	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	236					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		CTTCTCCAGTCTTAGAGGTGT	0.592													22	19					0	0	0.002780	0	0
COL17A1	1308	broad.mit.edu	37	10	105800840	105800840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:105800840G>A	uc001kxr.2	-	39	2853	c.2684C>T	c.(2683-2685)TCG>TTG	p.S895L		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	895	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GGACAGGAACGATCCTGGTGG	0.587													26	46					0	0	0.001512	0	0
C10orf79	80217	broad.mit.edu	37	10	105945764	105945764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:105945764C>T	uc001kxw.2	-	15	2094	c.1978G>A	c.(1978-1980)GGA>AGA	p.G660R	C10orf79_uc009xxq.2_5'UTR|C10orf79_uc001kxx.3_Missense_Mutation_p.G661R	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	660											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		CACAGAATTCCACATTTAGCT	0.338													29	65					0	0	0.001512	0	0
ITPRIP	85450	broad.mit.edu	37	10	106074373	106074373	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:106074373G>A	uc001kye.2	-	2	1510	c.1437C>T	c.(1435-1437)ATC>ATT	p.I479I	ITPRIP_uc001kyf.2_Silent_p.I479I|ITPRIP_uc001kyg.2_Silent_p.I479I	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	479						plasma membrane					0						TGCGGTTGCCGATGAAGAAGT	0.637													27	42					0	0	0.005443	0	0
CCDC147	159686	broad.mit.edu	37	10	106128210	106128210	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:106128210C>T	uc001kyh.2	+	6	956	c.822C>T	c.(820-822)CTC>CTT	p.L274L		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	274	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		CAAAGGAACTCGAGCAATTTC	0.423													13	18					0	0	0.002450	0	0
SORCS3	22986	broad.mit.edu	37	10	106937874	106937875	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:106937874_106937875TT>AA	uc001kyi.1	+	14	2179_2180	c.1952_1953TT>AA	c.(1951-1953)GTT>GAA	p.V651E	SORCS3_uc010qqz.1_Intron	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	651	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TTCACTTCGGTTCCTCTCTTTG	0.475													15	29					0	0	0.004672	0	0
SORCS3	22986	broad.mit.edu	37	10	106937879	106937879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:106937879C>T	uc001kyi.1	+	14	2184	c.1957C>T	c.(1957-1959)CTC>TTC	p.L653F	SORCS3_uc010qqz.1_Intron	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	653	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TTCGGTTCCTCTCTTTGTTGA	0.473													14	30					0	0	0.000743	0	0
SORCS3	22986	broad.mit.edu	37	10	106974277	106974277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:106974277G>A	uc001kyi.1	+	18	2680	c.2453G>A	c.(2452-2454)GGA>GAA	p.G818E	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	818	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ATGTGCCCTGGAAAAGCCCCT	0.552													15	22					0	0	0.004007	0	0
PDCD4	27250	broad.mit.edu	37	10	112635822	112635822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:112635822C>T	uc001kzh.2	+	2	280	c.37C>T	c.(37-39)CCT>TCT	p.P13S	PDCD4_uc001kzg.2_5'UTR|PDCD4_uc010qre.1_Missense_Mutation_p.P13S	NM_014456	NP_055271	Q53EL6	PDCD4_HUMAN	programmed cell death 4 isoform 1	13					apoptosis|cell aging|negative regulation of cell cycle|negative regulation of JUN kinase activity|negative regulation of transcription, DNA-dependent	cytosol|nucleus	protein binding|RNA binding			ovary(1)|breast(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.000526)|all cancers(201;0.00794)|BRCA - Breast invasive adenocarcinoma(275;0.125)		GAATGTAAACCCTGCAGGTAA	0.219													10	23					0	0	0.000443	0	0
NRAP	4892	broad.mit.edu	37	10	115383364	115383364	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:115383364T>A	uc001laj.2	-	23	2545	c.2381A>T	c.(2380-2382)AAA>ATA	p.K794I	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Missense_Mutation_p.K759I|NRAP_uc001lal.3_Missense_Mutation_p.K794I	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	794	Nebulin 19.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CCCTTTTGCTTTCTGGTTTTC	0.398													26	54					0	0	0.001512	0	0
C10orf81	79949	broad.mit.edu	37	10	115526406	115526406	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:115526406G>A	uc001lat.1	+	3	697	c.135G>A	c.(133-135)AAG>AAA	p.K45K	C10orf81_uc001lar.1_Silent_p.K51K|C10orf81_uc009xyc.1_5'UTR|C10orf81_uc001las.1_Intron	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	45	PH.									central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		TCCTGTCAAAGGCTGGGGAAA	0.328													28	60					0	0	0.002445	0	0
ATRNL1	26033	broad.mit.edu	37	10	117059554	117059554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:117059554C>T	uc001lcg.2	+	16	2812	c.2426C>T	c.(2425-2427)CCT>CTT	p.P809L	ATRNL1_uc010qsm.1_5'UTR|ATRNL1_uc010qsn.1_5'Flank	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	809	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		AAAGTATCACCTTGGGTAGGC	0.383													29	36					0	0	0.002445	0	0
C10orf96	374355	broad.mit.edu	37	10	118084575	118084575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:118084575G>A	uc001lck.2	+	2	303	c.52G>A	c.(52-54)GAG>AAG	p.E18K		NM_198515	NP_940917	P0C7W6	CJ096_HUMAN	hypothetical protein LOC374355	18	Potential.									ovary(2)	2		Lung NSC(174;0.204)|all_lung(145;0.248)		all cancers(201;0.014)		GCATCAGGCGGAGGAGAGTCG	0.517													18	28					0	0	0.002299	0	0
TIAL1	7073	broad.mit.edu	37	10	121336990	121336990	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:121336990A>C	uc001lei.1	-	9	1274	c.710T>G	c.(709-711)TTC>TGC	p.F237C	TIAL1_uc001leh.1_Missense_Mutation_p.F215C|TIAL1_uc001lej.1_Missense_Mutation_p.F254C|TIAL1_uc001lek.1_Missense_Mutation_p.F114C|TIAL1_uc009xzi.1_Missense_Mutation_p.F106C|TIAL1_uc010qtb.1_Missense_Mutation_p.F114C	NM_003252	NP_003243	Q01085	TIAR_HUMAN	TIA-1 related protein isoform 1	237	RRM 3.				apoptosis|defense response|induction of apoptosis|regulation of transcription from RNA polymerase II promoter	lysosome|nucleus|stress granule	nucleotide binding|RNA binding			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.00239)|BRCA - Breast invasive adenocarcinoma(275;0.0932)		CTTTTCTGGGAAAACTCTTAT	0.323													23	39					0	0	0.003330	0	0
FGFR2	2263	broad.mit.edu	37	10	123244952	123244952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:123244952C>T	uc010qtk.1	-	17	2799	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K	FGFR2_uc010qtg.1_Missense_Mutation_p.E606K|FGFR2_uc010qth.1_Missense_Mutation_p.E603K|FGFR2_uc010qti.1_Missense_Mutation_p.E629K|FGFR2_uc010qtj.1_Missense_Mutation_p.E719K|FGFR2_uc010qtl.1_Missense_Mutation_p.E602K|FGFR2_uc010qtm.1_Missense_Mutation_p.E601K|FGFR2_uc001lfl.3_Missense_Mutation_p.E719K|FGFR2_uc001lfm.2_Missense_Mutation_p.E630K|FGFR2_uc001lfg.3_Missense_Mutation_p.E326K|FGFR2_uc001lfk.1_5'Flank	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	718	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	CTGTGTCCTTCCTTCAGCAGC	0.537		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				48	50					0	0	0.003610	0	0
TACC2	10579	broad.mit.edu	37	10	123843897	123843897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:123843897C>T	uc001lfv.2	+	4	2242	c.1882C>T	c.(1882-1884)CCC>TCC	p.P628S	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P628S|TACC2_uc010qtv.1_Missense_Mutation_p.P628S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	628						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CAGAGACCATCCCAGCTCACA	0.577													17	20					0	0	0.004007	0	0
TACC2	10579	broad.mit.edu	37	10	123844357	123844357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:123844357C>T	uc001lfv.2	+	4	2702	c.2342C>T	c.(2341-2343)CCC>CTC	p.P781L	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P781L|TACC2_uc010qtv.1_Missense_Mutation_p.P781L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	781						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GTGCCACATCCCCCCCAGGGG	0.637													27	41					0	0	0.004656	0	0
TACC2	10579	broad.mit.edu	37	10	123954640	123954640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:123954640G>A	uc001lfv.2	+	8	6280	c.5920G>A	c.(5920-5922)GAA>AAA	p.E1974K	TACC2_uc001lfw.2_Missense_Mutation_p.E120K|TACC2_uc009xzx.2_Missense_Mutation_p.E1929K|TACC2_uc010qtv.1_Missense_Mutation_p.E1978K|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Missense_Mutation_p.E52K|TACC2_uc001lga.2_Missense_Mutation_p.E52K|TACC2_uc009xzy.2_Missense_Mutation_p.E52K|TACC2_uc010qtw.1_Missense_Mutation_p.E69K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1974	Pro-rich.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACCACCCCCCGAAGTCATCCC	0.617													15	12					0	0	0.003163	0	0
TACC2	10579	broad.mit.edu	37	10	123970390	123970390	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:123970390G>A	uc001lfv.2	+	9	6810	c.6450G>A	c.(6448-6450)GTG>GTA	p.V2150V	TACC2_uc001lfw.2_Silent_p.V296V|TACC2_uc009xzx.2_Silent_p.V2105V|TACC2_uc010qtv.1_Silent_p.V2154V|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Silent_p.V228V|TACC2_uc001lga.2_Silent_p.V228V|TACC2_uc009xzy.2_Silent_p.V228V|TACC2_uc001lgb.2_Silent_p.V185V|TACC2_uc010qtw.1_Silent_p.V245V	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2150						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCCCCCCAGTGAAGGAGACGC	0.517													38	64					0	0	0.001706	0	0
TACC2	10579	broad.mit.edu	37	10	123985961	123985961	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:123985961C>T	uc001lfv.2	+	13	8049	c.7689C>T	c.(7687-7689)CCC>CCT	p.P2563P	TACC2_uc001lfw.2_Silent_p.P709P|TACC2_uc009xzx.2_Silent_p.P2518P|TACC2_uc010qtv.1_Silent_p.P2567P|TACC2_uc001lfx.2_Silent_p.P267P|TACC2_uc001lfy.2_Silent_p.P263P|TACC2_uc001lfz.2_Silent_p.P641P|TACC2_uc001lga.2_Silent_p.P641P|TACC2_uc009xzy.2_Silent_p.P653P|TACC2_uc001lgb.2_Silent_p.P598P|TACC2_uc010qtw.1_Silent_p.P658P	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2563						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGTCATCTCCCGTCCGCATGT	0.522													4	9					0	0	0.000248	0	0
HTRA1	5654	broad.mit.edu	37	10	124266289	124266289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:124266289C>T	uc001lgj.2	+	4	988	c.860C>T	c.(859-861)TCC>TTC	p.S287F		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	287	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				AGCCCGTTTTCCCTTCAAAAC	0.617													17	26					0	0	0.001523	0	0
DMBT1	1755	broad.mit.edu	37	10	124389355	124389355	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:124389355G>A	uc001lgk.1	+	44	5388	c.5282_splice	c.e44-1	p.R1761_splice	DMBT1_uc001lgl.1_Splice_Site_p.R1751_splice|DMBT1_uc001lgm.1_Splice_Site_p.R1133_splice|DMBT1_uc009xzz.1_Splice_Site_p.R1761_splice|DMBT1_uc010qtx.1_Splice_Site_p.R481_splice|DMBT1_uc009yab.1_Splice_Site_p.R464_splice|DMBT1_uc009yac.1_Splice_Site_p.G55_splice	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b						epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTCCTCTCTAGGACCCTCTTC	0.458													41	79					0	0	0.003610	0	0
DMBT1	1755	broad.mit.edu	37	10	124390787	124390787	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:124390787C>T	uc001lgk.1	+	46	6055	c.5949C>T	c.(5947-5949)GTC>GTT	p.V1983V	DMBT1_uc001lgl.1_Silent_p.V1973V|DMBT1_uc001lgm.1_Silent_p.V1355V|DMBT1_uc009xzz.1_Silent_p.V1983V|DMBT1_uc010qtx.1_Silent_p.V703V|DMBT1_uc009yab.1_Silent_p.V686V|DMBT1_uc009yac.1_Silent_p.V277V	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1983	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ATGCTGGTGTCATCTGCTCAG	0.537													35	54					0	0	0.001485	0	0
DMBT1	1755	broad.mit.edu	37	10	124399773	124399773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:124399773C>T	uc001lgk.1	+	52	6879	c.6773C>T	c.(6772-6774)TCC>TTC	p.S2258F	DMBT1_uc001lgl.1_Missense_Mutation_p.S2248F|DMBT1_uc001lgm.1_Missense_Mutation_p.S1630F|DMBT1_uc009xzz.1_Missense_Mutation_p.S2257F|DMBT1_uc010qtx.1_Missense_Mutation_p.S978F|DMBT1_uc009yab.1_Missense_Mutation_p.S961F|DMBT1_uc009yac.1_Missense_Mutation_p.S552F	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2258	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTGAACATTTCCTTTTATACT	0.463													38	79					0	0	0.002222	0	0
C10orf120	399814	broad.mit.edu	37	10	124457719	124457719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:124457719G>A	uc001lgn.2	-	3	570	c.538C>T	c.(538-540)CAT>TAT	p.H180Y		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	180										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				AAAGGCTGATGATTTCCCAGA	0.507													41	61					0	0	0.003610	0	0
C10orf120	399814	broad.mit.edu	37	10	124457734	124457734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:124457734G>A	uc001lgn.2	-	3	555	c.523C>T	c.(523-525)CGG>TGG	p.R175W		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	175								p.R175R(1)		kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				CCCAGAGCCCGAGCAAGCCTC	0.498													44	68					0	0	0.003610	0	0
C10orf120	399814	broad.mit.edu	37	10	124458883	124458883	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:124458883C>T	uc001lgn.2	-	2	254	c.222G>A	c.(220-222)GGG>GGA	p.G74G		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	74										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GGGAGTATTTCCCAAGGGCAA	0.483													17	26					0	0	0.003330	0	0
GPR26	2849	broad.mit.edu	37	10	125434415	125434415	+	Silent	SNP	C	T	T	rs148383030		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:125434415C>T	uc001lhh.2	+	2	803	c.750C>T	c.(748-750)TTC>TTT	p.F250F		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	250	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity	p.F250F(1)		skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				TAGGGACCTTCCTTGTGTGCT	0.567													13	21					0	0	0.004990	0	0
CPXM2	119587	broad.mit.edu	37	10	125528047	125528047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:125528047C>T	uc001lhk.1	-	9	1619	c.1294G>A	c.(1294-1296)GAA>AAA	p.E432K	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	432					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		ATTACCCCTTCGTAGGCCTTC	0.612													6	18					0	0	0.001168	0	0
CPXM2	119587	broad.mit.edu	37	10	125528156	125528156	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:125528156G>A	uc001lhk.1	-	9	1510	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	395					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CCTGACACACGAACTGCACCA	0.627													30	34					0	0	0.002096	0	0
CPXM2	119587	broad.mit.edu	37	10	125557535	125557536	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:125557535_125557536CC>TT	uc001lhk.1	-	6	1170_1171	c.845_846GG>AA	c.(844-846)GGG>GAA	p.G282E	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	282	F5/8 type C.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TGCAGATGCTCCCATTATCAAA	0.554													21	21					0	0	0.004672	0	0
CHST15	51363	broad.mit.edu	37	10	125805437	125805438	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:125805437_125805438GG>AA	uc001lhl.2	-	1	804_805	c.291_292CC>TT	c.(289-294)ATCCTT>ATTTTT	p.L98F	CHST15_uc001lhm.2_Missense_Mutation_p.L98F|CHST15_uc001lhn.2_Missense_Mutation_p.L98F|CHST15_uc010que.1_Missense_Mutation_p.L98F|CHST15_uc001lho.2_Missense_Mutation_p.L98F	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	98	Helical; Signal-anchor for type II membrane protein; (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						GCCCCAGAAAGGATGTAAGAAG	0.495													29	46					0	0	0.004672	0	0
DOCK1	1793	broad.mit.edu	37	10	128796375	128796375	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:128796375A>G	uc001ljt.2	+	8	693	c.629A>G	c.(628-630)GAT>GGT	p.D210G	DOCK1_uc010qun.1_Missense_Mutation_p.D210G	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	210					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CAGAACATAGATATTAACAGA	0.413													16	17					0	0	0.004990	0	0
FOXI2	399823	broad.mit.edu	37	10	129536803	129536803	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:129536803C>T	uc009yas.2	+	2	531	c.531C>T	c.(529-531)ACC>ACT	p.T177T	uc009yar.1_5'Flank	NM_207426	NP_997309	Q6ZQN5	FOXI2_HUMAN	forkhead box I2	177	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_epithelial(44;0.0021)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)				ATTACTGGACCCTGGACCCCA	0.577													3	9					0	0	0.000602	0	0
PTPRE	5791	broad.mit.edu	37	10	129869087	129869087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:129869087C>T	uc001lkb.2	+	15	1588	c.1309C>T	c.(1309-1311)CGG>TGG	p.R437W	PTPRE_uc009yat.2_Missense_Mutation_p.R448W|PTPRE_uc009yau.2_Missense_Mutation_p.R437W|PTPRE_uc001lkd.2_Missense_Mutation_p.R379W|PTPRE_uc010quq.1_Missense_Mutation_p.R338W	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	437	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				GACAAATGTCCGGATCATGAA	0.522													4	23					0	0	0.000602	0	0
EBF3	253738	broad.mit.edu	37	10	131755539	131755539	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:131755539G>A	uc001lki.1	-	6	596	c.537C>T	c.(535-537)GAC>GAT	p.D179D		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	179					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		TGATTACAGGGTCTGAGGGCG	0.418													23	34					0	0	0.001061	0	0
DPYSL4	10570	broad.mit.edu	37	10	134013999	134013999	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:134013999C>T	uc009ybb.2	+	9	1105	c.951C>T	c.(949-951)CTC>CTT	p.L317L		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	317					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		CGGACCACCTCACCTGCTTGC	0.667													9	16					0	0	0.000673	0	0
C10orf93	255352	broad.mit.edu	37	10	134754510	134754510	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:134754510C>A	uc001llt.1	-	4	437	c.361G>T	c.(361-363)GGA>TGA	p.G121*	C10orf93_uc001llu.2_Nonsense_Mutation_p.G121*	NM_173572	NP_775843	Q5SR76	CJ093_HUMAN	hypothetical protein LOC255352	121	TPR 1.						binding			pancreas(1)	1		all_cancers(35;1.8e-07)|all_epithelial(44;6.22e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Colorectal(31;0.119)|Glioma(114;0.172)|Melanoma(40;0.175)		Epithelial(32;4.28e-05)|OV - Ovarian serous cystadenocarcinoma(35;4.31e-05)|all cancers(32;5.02e-05)		CTCGGTTCTCCTTTGGCAAAG	0.423											OREG0020643	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	19					3.07112e-06	5.29709e-06	0.000978	1	0
GPR123	84435	broad.mit.edu	37	10	134886493	134886493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:134886493G>A	uc001llw.2	+	3	527	c.527G>A	c.(526-528)GGG>GAG	p.G176E				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:Variant_position_missing_in_Q86SQ6_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		ATTGCTTCTGGGAACAGTGTT	0.552													5	8					0	0	0.001168	0	0
PRAP1	118471	broad.mit.edu	37	10	135165858	135165858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:135165858G>A	uc001lmp.2	+	5	448	c.370G>A	c.(370-372)GAG>AAG	p.E124K	PRAP1_uc001lmr.2_Missense_Mutation_p.E115K|PRAP1_uc001lmq.1_Missense_Mutation_p.E96K	NM_145202	NP_660203	Q96NZ9	PRAP1_HUMAN	proline-rich acidic protein 1 isoform 1	124						extracellular region					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		all cancers(32;7.08e-06)|OV - Ovarian serous cystadenocarcinoma(35;7.88e-06)|Epithelial(32;9.48e-06)		CCAGGGCGAGGAGAGGCCCCG	0.657													17	45					0	0	0.004990	0	0
SYCE1	93426	broad.mit.edu	37	10	135368878	135368878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:135368878C>T	uc001lno.2	-	12	1000	c.895G>A	c.(895-897)GAA>AAA	p.E299K	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Missense_Mutation_p.E171K|SYCE1_uc009ybn.2_Missense_Mutation_p.E299K|SYCE1_uc001lnn.2_Missense_Mutation_p.E263K	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	299					cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		CCAGCCTCTTCCTCTTGTGTG	0.502													42	53					0	0	0.003610	0	0
SYCE1	93426	broad.mit.edu	37	10	135369376	135369376	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr10:135369376C>T	uc001lno.2	-	10	732	c.627G>A	c.(625-627)GTG>GTA	p.V209V	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Silent_p.V81V|SYCE1_uc009ybn.2_Silent_p.V209V|SYCE1_uc001lnn.2_Silent_p.V173V	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	209	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GCTGATGCTTCACGTCTTCCA	0.592													7	20					0	0	0.003080	0	0
C11orf35	256329	broad.mit.edu	37	11	558870	558870	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:558870G>A	uc001lpx.2	-	2	207	c.144C>T	c.(142-144)TGC>TGT	p.C48C	uc001lpy.2_RNA|uc001lpz.2_5'Flank|RASSF7_uc001lqa.2_5'Flank|RASSF7_uc001lqb.2_5'Flank|RASSF7_uc001lqc.2_5'Flank|RASSF7_uc001lqd.2_5'Flank	NM_173573	NP_775844	Q8IXW0	CK035_HUMAN	hypothetical protein LOC256329	48										pancreas(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGTCGGCAGAGCAGACCACCG	0.706													10	22					0	0	0.001368	0	0
RASSF7	8045	broad.mit.edu	37	11	563473	563473	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:563473C>T	uc001lqc.2	+	5	1064	c.1029C>T	c.(1027-1029)CCC>CCT	p.P343P	C11orf35_uc001lpx.2_5'Flank|RASSF7_uc001lqa.2_3'UTR|RASSF7_uc001lqb.2_3'UTR|RASSF7_uc001lqd.2_Intron	NM_003475	NP_003466	Q02833	RASF7_HUMAN	Ras association (RalGDS/AF-6) domain family	343					regulation of transcription, DNA-dependent|signal transduction	nucleus	DNA binding|protein binding			skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGCCTAGGCCCCGAGGGTATG	0.692													4	8					0	0	0.000248	0	0
CDHR5	53841	broad.mit.edu	37	11	618097	618097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:618097C>T	uc001lqj.2	-	14	2080	c.1975G>A	c.(1975-1977)GAG>AAG	p.E659K	IRF7_uc009ycb.2_5'Flank|IRF7_uc010qwf.1_5'Flank|IRF7_uc001lqf.2_5'Flank|IRF7_uc010qwg.1_5'Flank|IRF7_uc001lqg.2_5'Flank|IRF7_uc001lqh.2_5'Flank|IRF7_uc001lqi.2_5'Flank|IRF7_uc010qwh.1_5'Flank|CDHR5_uc001lqk.2_Missense_Mutation_p.E465K|CDHR5_uc009ycc.2_Missense_Mutation_p.E493K|CDHR5_uc009ycd.2_Missense_Mutation_p.E653K|CDHR5_uc001lql.2_Missense_Mutation_p.E659K	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	659	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CGCTTGTCCTCCGAGGGGCCG	0.652													8	14					0	0	0.003080	0	0
LRDD	55367	broad.mit.edu	37	11	802267	802267	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:802267G>A	uc001lro.1	-	6	1246	c.1104C>T	c.(1102-1104)GTC>GTT	p.V368V	LRDD_uc009yck.1_RNA|LRDD_uc001lrk.1_Silent_p.V368V|LRDD_uc001lrl.1_Silent_p.V222V|LRDD_uc001lrm.1_Silent_p.V55V|LRDD_uc001lrn.1_Silent_p.V222V|LRDD_uc001lrp.1_5'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	368	ZU5 1.				apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GACCCAGGGGGACGAGGCCTG	0.706													8	21					0	0	0.000443	0	0
EFCAB4A	283229	broad.mit.edu	37	11	829389	829389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:829389G>A	uc001lrv.2	+	3	685	c.307G>A	c.(307-309)GGA>AGA	p.G103R	EFCAB4A_uc009ycm.1_Missense_Mutation_p.G103R|EFCAB4A_uc001lrw.2_Missense_Mutation_p.G10R			Q8N4Y2	EFC4A_HUMAN	RecName: Full=EF-hand calcium-binding domain-containing protein 4A;	103					store-operated calcium entry		calcium ion binding				0		all_cancers(49;2.31e-08)|all_epithelial(84;3.72e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.179)|all_lung(207;0.227)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GTCAGCCCAGGGAGCGAACCC	0.677													5	8					0	0	0.001984	0	0
MUC2	4583	broad.mit.edu	37	11	1095808	1095808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1095808G>A	uc001lsx.1	+	36	13432	c.13405G>A	c.(13405-13407)GAC>AAC	p.D4469N		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4469						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CGAGGACCCCGACGGCTGCTG	0.697													6	4					0	0	0.000443	0	0
MUC5B	727897	broad.mit.edu	37	11	1156663	1156663	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1156663G>A	uc009ycr.1	+	7	805	c.679_splice	c.e7+1	p.N227_splice		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;						cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CTCTCCCACAGTAAGGCCCCA	0.612													18	25					0	0	0.000743	0	0
MUC5B	727897	broad.mit.edu	37	11	1271063	1271063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1271063C>T	uc009ycr.1	+	51	14498	c.14372C>T	c.(14371-14373)TCC>TTC	p.S4791F	MUC5B_uc001ltb.2_Missense_Mutation_p.S4321F	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4318	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GCCACCAAATCCACAGCTACC	0.612													32	47					0	0	0.001485	0	0
TOLLIP	54472	broad.mit.edu	37	11	1311530	1311530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1311530G>A	uc001lte.2	-	3	404	c.293C>T	c.(292-294)CCC>CTC	p.P98L	TOLLIP_uc001ltd.2_Missense_Mutation_p.P29L|TOLLIP_uc009ycu.2_Intron|TOLLIP_uc001ltf.2_Missense_Mutation_p.P48L	NM_019009	NP_061882	Q9H0E2	TOLIP_HUMAN	toll interacting protein	98	C2.				cell-cell signaling|inflammatory response|innate immune response|intracellular signal transduction|leukocyte activation|phosphorylation	cytosol|interleukin-1 receptor complex|interleukin-18 receptor complex	kinase binding|signal transducer activity|Toll-like receptor binding				0		all_cancers(49;7.62e-05)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.00152)|Lung(200;0.09)|LUSC - Lung squamous cell carcinoma(625;0.107)		ATTCCAGCGGGGATTCTTGGC	0.597													9	16					0	0	0.000443	0	0
DUSP8	1850	broad.mit.edu	37	11	1586989	1586989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1586989C>T	uc001lts.2	-	2	196	c.68G>A	c.(67-69)GGG>GAG	p.G23E		NM_004420	NP_004411	Q13202	DUS8_HUMAN	dual specificity phosphatase 8	23	Rhodanese.				inactivation of MAPK activity	cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		all_epithelial(84;0.000134)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000621)|Lung(200;0.0687)|LUSC - Lung squamous cell carcinoma(625;0.0825)		CCCCCCAGGCCCGCCCCGCAG	0.662													21	47					0	0	0.003330	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629158	1629158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1629158G>A	uc001ltw.1	-	1	536	c.458C>T	c.(457-459)CCC>CTC	p.P153L		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	153	5.|11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		GGAGCAGCTGGGCTTGCAGCA	0.413													44	73					0	0	0.002522	0	0
SYT8	90019	broad.mit.edu	37	11	1858596	1858596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1858596G>A	uc001lue.1	+	9	1269	c.1141G>A	c.(1141-1143)GAG>AAG	p.E381K	SYT8_uc001lud.2_Missense_Mutation_p.E381K|SYT8_uc001luf.1_Missense_Mutation_p.E367K|TNNI2_uc010qxc.1_5'Flank|TNNI2_uc010qxd.1_5'Flank|TNNI2_uc010qxe.1_5'Flank	NM_138567	NP_612634	Q8NBV8	SYT8_HUMAN	synaptotagmin VIII	381	Cytoplasmic (Potential).					acrosomal vesicle|integral to membrane|plasma membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCCAGCCAGGGAGGTGGACCG	0.741													10	11					0	0	0.000673	0	0
LSP1	4046	broad.mit.edu	37	11	1908760	1908760	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1908760G>A	uc001lui.2	+	10	1162	c.987G>A	c.(985-987)GAG>GAA	p.E329E	LSP1_uc001luj.2_Silent_p.E457E|LSP1_uc001luk.2_Silent_p.E267E|LSP1_uc001lul.2_Silent_p.E267E|LSP1_uc001lum.2_Silent_p.E267E	NM_002339	NP_002330	P33241	LSP1_HUMAN	lymphocyte-specific protein 1 isoform 1	329					cellular component movement|cellular defense response	actin cytoskeleton|Golgi apparatus|plasma membrane	actin binding|signal transducer activity			large_intestine(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|Lung(200;0.0729)|LUSC - Lung squamous cell carcinoma(625;0.0856)		GGAAGTATGAGAAGGTGCTTG	0.577													16	28					0	0	0.001523	0	0
MRPL23	6150	broad.mit.edu	37	11	1972180	1972180	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:1972180C>G	uc001lux.2	+	2	160	c.69C>G	c.(67-69)AAC>AAG	p.N23K		NM_021134	NP_066957	Q16540	RM23_HUMAN	mitochondrial ribosomal protein L23	23					translation	mitochondrial large ribosomal subunit	nucleotide binding|RNA binding|structural constituent of ribosome			large_intestine(2)|ovary(1)	3		all_epithelial(84;6.24e-05)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.0026)|Lung(200;0.0171)|LUSC - Lung squamous cell carcinoma(625;0.0842)		TCCGAACCAACTTCTTCATTC	0.617													8	13					0	0	0.003080	0	0
TH	7054	broad.mit.edu	37	11	2189730	2189730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:2189730C>T	uc001lvq.2	-	4	590	c.571G>A	c.(571-573)GGG>AGG	p.G191R	TH_uc001lvp.2_Missense_Mutation_p.G187R|TH_uc001lvr.2_Missense_Mutation_p.G160R|TH_uc010qxj.1_Missense_Mutation_p.G164R|TH_uc001lvs.2_Missense_Mutation_p.G160R|TH_uc001lvt.2_Missense_Mutation_p.G164R|TH_uc009ydh.1_5'Flank	NM_199292	NP_954986	P07101	TY3H_HUMAN	tyrosine hydroxylase isoform a	191					dopamine biosynthetic process from tyrosine|embryonic camera-type eye morphogenesis|epinephrine biosynthetic process|eye photoreceptor cell development|heart morphogenesis|hormone biosynthetic process|learning|locomotory behavior|memory|neurotransmitter biosynthetic process|neurotransmitter secretion|norepinephrine biosynthetic process|pigmentation|regulation of heart contraction|response to ethanol|response to hypoxia|synaptic transmission, dopaminergic|visual perception	cytosol|internal side of plasma membrane|melanosome membrane|nucleus|perikaryon|smooth endoplasmic reticulum	protein binding|tyrosine 3-monooxygenase activity				0		all_epithelial(84;1.46e-23)|Lung NSC(207;4.44e-11)|all_lung(207;1.11e-09)|Ovarian(85;1.78e-06)|Breast(177;1.78e-05)|Medulloblastoma(188;0.0208)|all_neural(188;0.0416)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;8.45e-09)|Lung(200;0.000152)|LUSC - Lung squamous cell carcinoma(625;0.00154)	L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Metyrosine(DB00765)|Tetrahydrobiopterin(DB00360)	CCCTTGGGCCCCGCGGGGCTG	0.682													6	13					0	0	0.001984	0	0
TRPM5	29850	broad.mit.edu	37	11	2433995	2433995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:2433995C>T	uc001lwm.3	-	15	2353	c.2344G>A	c.(2344-2346)GAA>AAA	p.E782K	TRPM5_uc010qxl.1_Missense_Mutation_p.E782K|TRPM5_uc009ydn.2_Missense_Mutation_p.E784K	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	782	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGCCGGATTTCCTCCAGCACC	0.652													116	14					0	0	0.003610	0	0
SLC22A18	5002	broad.mit.edu	37	11	2929491	2929491	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:2929491C>G	uc001lwx.2	+	3	391	c.173C>G	c.(172-174)TCC>TGC	p.S58C	SLC22A18_uc001lwy.2_Missense_Mutation_p.S58C|SLC22A18_uc001lwz.2_Missense_Mutation_p.S58C	NM_183233	NP_899056	Q96BI1	S22AI_HUMAN	tumor suppressing subtransferable candidate 5	58					excretion|organic cation transport	apical plasma membrane|cytoplasmic part|integral to membrane|nuclear envelope	drug:hydrogen antiporter activity|symporter activity|ubiquitin protein ligase binding			central_nervous_system(2)|ovary(1)	3		all_epithelial(84;0.000124)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)|all_lung(207;0.198)		BRCA - Breast invasive adenocarcinoma(625;0.00256)|LUSC - Lung squamous cell carcinoma(625;0.192)		GGCCTGGATTCCATTGCCTTC	0.617													71	120					0	0	0.003610	0	0
NUP98	4928	broad.mit.edu	37	11	3735138	3735138	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:3735138G>A	uc001lyh.2	-	19	2778	c.2487C>T	c.(2485-2487)ATC>ATT	p.I829I	NUP98_uc001lyi.2_Silent_p.I829I|NUP98_uc001lyj.1_Silent_p.I829I|NUP98_uc001lyk.1_Silent_p.I846I	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	846	Peptidase S59.				carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		CTTCATAGTTGATATCAGCAA	0.403			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								25	29					0	0	0.003954	0	0
OR52K2	119774	broad.mit.edu	37	11	4470716	4470716	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4470716C>T	uc001lyz.1	+	1	147	c.147C>T	c.(145-147)CTC>CTT	p.L49L		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCTCCTTCTCATCATCCAGG	0.542													34	66					0	0	0.004878	0	0
OR52K1	390036	broad.mit.edu	37	11	4510453	4510453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4510453C>T	uc001lza.1	+	1	323	c.323C>T	c.(322-324)TCC>TTC	p.S108F		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		TTCCTTCACTCCTTCTCCATC	0.522													17	23					0	0	0.004007	0	0
TRIM68	55128	broad.mit.edu	37	11	4621703	4621703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4621703G>A	uc001lzf.1	-	7	1499	c.1261C>T	c.(1261-1263)CGC>TGC	p.R421C	TRIM68_uc001lzg.1_Missense_Mutation_p.R198C|TRIM68_uc010qyj.1_RNA	NM_018073	NP_060543	Q6AZZ1	TRI68_HUMAN	ring finger protein 137	421	B30.2/SPRY.				protein autoubiquitination|regulation of androgen receptor signaling pathway	Golgi apparatus|nucleolus|perinuclear region of cytoplasm	androgen receptor binding|histone acetyltransferase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;9.49e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		CCCACCCGGCGAGGAGGGACC	0.537													12	38					0	0	0.001855	0	0
OR51E2	81285	broad.mit.edu	37	11	4703695	4703695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4703695G>A	uc001lzk.2	-	2	491	c.247C>T	c.(247-249)CTT>TTT	p.L83F		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		AACCAGAAAAGGGCAAGGATC	0.517													17	32					0	0	0.001216	0	0
OR52R1	119695	broad.mit.edu	37	11	4825705	4825705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4825705G>A	uc010qym.1	-	1	143	c.143C>T	c.(142-144)TCC>TTC	p.S48F		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	Error:Variant_position_missing_in_Q8NGF1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAGGCTTTTGGATGGGACTAT	0.338													26	49					0	0	0.001061	0	0
OR51F2	119694	broad.mit.edu	37	11	4843444	4843444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4843444C>T	uc010qyn.1	+	1	829	c.829C>T	c.(829-831)CGC>TGC	p.R277C		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	277	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCTTGTCCATCGCTATGGCCA	0.468													38	50					0	0	0.001287	0	0
OR51S1	119692	broad.mit.edu	37	11	4869890	4869890	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4869890G>A	uc010qyo.1	-	1	549	c.549C>T	c.(547-549)ACC>ACT	p.T183T		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AATAAGAATGGGTTAGGACCT	0.547													32	58					0	0	0.001512	0	0
OR51A7	119687	broad.mit.edu	37	11	4928611	4928611	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4928611C>T	uc010qyq.1	+	1	12	c.12C>T	c.(10-12)CTC>CTT	p.L4L		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGTCTGTTCTCAATAACTCCG	0.438													19	14					0	0	0.001216	0	0
OR51A7	119687	broad.mit.edu	37	11	4929091	4929091	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4929091G>A	uc010qyq.1	+	1	492	c.492G>A	c.(490-492)AGG>AGA	p.R164R		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCACCTTAAGGAGATTAAAAT	0.393													30	46					0	0	0.001061	0	0
OR51A4	401666	broad.mit.edu	37	11	4967778	4967778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4967778C>T	uc010qys.1	-	1	553	c.553G>A	c.(553-555)GAT>AAT	p.D185N		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTCATGACATCCTGGTGGAGA	0.408													8	90					0	0	0.000743	0	0
OR51A4	401666	broad.mit.edu	37	11	4968016	4968016	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4968016G>A	uc010qys.1	-	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCCATGAATGAAGAATTCCT	0.443													53	95					0	0	0.003610	0	0
OR51A2	401667	broad.mit.edu	37	11	4976391	4976391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:4976391C>T	uc010qyt.1	-	1	553	c.553G>A	c.(553-555)GAT>AAT	p.D185N		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTCATGACATCCTGGTGGAGA	0.413													15	10					0	0	0.002780	0	0
MMP26	56547	broad.mit.edu	37	11	5011062	5011062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5011062G>A	uc001lzv.2	+	2	302	c.284G>A	c.(283-285)GGA>GAA	p.G95E		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	95					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		ATCTCGCCAGGAAGATGCAAG	0.522													11	17					0	0	0.002450	0	0
MMP26	56547	broad.mit.edu	37	11	5012670	5012670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5012670G>A	uc001lzv.2	+	4	557	c.539G>A	c.(538-540)GGA>GAA	p.G180E		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	180					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCAAATTCTGGAAATCCTGGA	0.473													61	73					0	0	0.003610	0	0
OR52J3	119679	broad.mit.edu	37	11	5067961	5067961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5067961C>T	uc010qyv.1	+	1	206	c.206C>T	c.(205-207)TCC>TTC	p.S69F		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCATTCTTTCCACTATTGAT	0.498													15	27					0	0	0.004007	0	0
OR52J3	119679	broad.mit.edu	37	11	5068338	5068338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5068338C>T	uc010qyv.1	+	1	583	c.583C>T	c.(583-585)CGT>TGT	p.R195C		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGAAACATTCGTATCAATGG	0.438													52	64					0	0	0.003610	0	0
OR52A4	390053	broad.mit.edu	37	11	5142206	5142206	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5142206C>T	uc001lzz.1	-	1	603	c.603G>A	c.(601-603)AAG>AAA	p.K201K		NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TACCATAGACCTTATTAATGT	0.408													25	32					0	0	0.002780	0	0
OR52A5	390054	broad.mit.edu	37	11	5153391	5153391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5153391G>A	uc010qyx.1	-	1	482	c.482C>T	c.(481-483)TCC>TTC	p.S161F		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		GAGCCCTAAGGAAGGTATTAT	0.458													27	34					0	0	0.004656	0	0
OR51V1	283111	broad.mit.edu	37	11	5221079	5221079	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5221079G>A	uc010qyz.1	-	1	852	c.852C>T	c.(850-852)CTC>CTT	p.L284L		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTTGCCAATGAGAACGTGGG	0.468													16	25					0	0	0.004990	0	0
OR51B4	79339	broad.mit.edu	37	11	5322356	5322356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5322356C>T	uc010qza.1	-	1	821	c.821G>A	c.(820-822)AGC>AAC	p.S274N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGGACATAGCTCATGGTAAT	0.418													19	36					0	0	0.002299	0	0
OR51B5	282763	broad.mit.edu	37	11	5364248	5364248	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5364248G>A	uc001map.1	-	1	507	c.507C>T	c.(505-507)TCC>TCT	p.S169S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Silent_p.S169S	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAGAACATGGGAGTGACAAT	0.473													32	57					0	0	0.003755	0	0
OR51B6	390058	broad.mit.edu	37	11	5373184	5373184	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5373184G>A	uc010qzb.1	+	1	447	c.447G>A	c.(445-447)AGG>AGA	p.R149R	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TATTGACAAGGGCTGGTCTGT	0.473													29	33					0	0	0.001271	0	0
OR51B6	390058	broad.mit.edu	37	11	5373349	5373349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5373349G>A	uc010qzb.1	+	1	612	c.612G>A	c.(610-612)ATG>ATA	p.M204I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TATTTGCAATGGTCTTGTTGG	0.443													32	48					0	0	0.003755	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444354	5444354	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5444354C>T	uc010qzd.1	+	1	924	c.924C>T	c.(922-924)TTC>TTT	p.F308F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTTAAATTTCCTTTCCCTCA	0.393													10	6					0	0	0.000673	0	0
OR51I1	390063	broad.mit.edu	37	11	5462550	5462550	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5462550G>A	uc010qze.1	-	1	195	c.195C>T	c.(193-195)CTC>CTT	p.L65L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CGAGCATAGAGAGGAAGTAGT	0.448													20	37					0	0	0.000958	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529560	5529560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5529560G>A	uc001may.1	-	2	1315	c.1229C>T	c.(1228-1230)CCA>CTA	p.P410L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	410										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGGAAAGCTGGGCAGGAGGA	0.547													37	52					0	0	0.001951	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530056	5530056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5530056C>T	uc001may.1	-	2	819	c.733G>A	c.(733-735)GAG>AAG	p.E245K	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	245										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGAATGCTCTCCAAGTTACTG	0.493													26	52					0	0	0.001512	0	0
OR52H1	390067	broad.mit.edu	37	11	5566283	5566283	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5566283G>A	uc010qzh.1	-	1	471	c.471C>T	c.(469-471)TCC>TCT	p.S157S	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCTTCGAAAGGAGATGCCCA	0.473													20	17					0	0	0.001216	0	0
TRIM22	10346	broad.mit.edu	37	11	5730469	5730469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5730469G>A	uc001mbr.2	+	8	1365	c.1088G>A	c.(1087-1089)GGA>GAA	p.G363E	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|TRIM22_uc009yes.2_Missense_Mutation_p.G359E|TRIM22_uc010qzm.1_Missense_Mutation_p.G191E|TRIM22_uc009yeu.2_Missense_Mutation_p.G174E|OR56B1_uc001mbs.1_Intron|OR56B1_uc009yev.1_Intron	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	363	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		GATGTGTCTGGAAAGATTGCC	0.378													22	44					0	0	0.003330	0	0
OR52N4	390072	broad.mit.edu	37	11	5776234	5776234	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5776234G>A	uc001mbu.2	+	1	312	c.264G>A	c.(262-264)TGG>TGA	p.W88*	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		GCATCTTCTGGTTTCATCTCA	0.473													37	43					0	0	0.004878	0	0
OR52N5	390075	broad.mit.edu	37	11	5799757	5799757	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5799757G>A	uc010qzn.1	-	1	108	c.108C>T	c.(106-108)TCC>TCT	p.S36S	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		AGAGTGGGAGGGAGATCCATA	0.383													43	60					0	0	0.003214	0	0
OR52N1	79473	broad.mit.edu	37	11	5809377	5809377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5809377G>A	uc010qzo.1	-	1	670	c.670C>T	c.(670-672)CTT>TTT	p.L224F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		ACTGCTTGAAGAATCATAGTG	0.478													21	40					0	0	0.001523	0	0
OR52E6	390078	broad.mit.edu	37	11	5862851	5862851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5862851C>T	uc010qzq.1	-	1	277	c.277G>A	c.(277-279)GAA>AAA	p.E93K	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAGATATTTCCTTGATATTG	0.473													54	72					0	0	0.003610	0	0
OR52E4	390081	broad.mit.edu	37	11	5905749	5905749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5905749C>T	uc010qzs.1	+	1	227	c.227C>T	c.(226-228)TCC>TTC	p.S76F	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGGGTCTGTCCACATCCACT	0.433													42	82					0	0	0.001951	0	0
OR56A3	390083	broad.mit.edu	37	11	5968624	5968624	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5968624C>T	uc010qzt.1	+	1	48	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTCAGACTTCCTCTTGAATT	0.483													12	25					0	0	0.001368	0	0
OR56A3	390083	broad.mit.edu	37	11	5968696	5968696	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5968696C>T	uc010qzt.1	+	1	120	c.120C>T	c.(118-120)CTC>CTT	p.L40L		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCTTTTCCTCTTGGCCGTAG	0.597													26	34					0	0	0.003954	0	0
OR56A5	390084	broad.mit.edu	37	11	5988988	5988988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5988988G>A	uc010qzu.1	-	1	737	c.737C>T	c.(736-738)TCC>TTC	p.S246F		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	246	Cytoplasmic (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GATGAAGTGGGAACCACAAGT	0.473													4	4					0	0	0.000248	0	0
OR56A5	390084	broad.mit.edu	37	11	5989352	5989352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5989352G>A	uc010qzu.1	-	1	373	c.373C>T	c.(373-375)CGC>TGC	p.R125C		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	125	Cytoplasmic (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GCCACATAGCGGTCATAGGCC	0.493													4	7					0	0	0.000248	0	0
OR56A5	390084	broad.mit.edu	37	11	5989503	5989503	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5989503G>A	uc010qzu.1	-	1	222	c.222C>T	c.(220-222)ATC>ATT	p.I74I		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	74	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GGCAGAGTACGATGTCCAGCA	0.562													15	23					0	0	0.003163	0	0
OR56A5	390084	broad.mit.edu	37	11	5989656	5989656	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:5989656G>A	uc010qzu.1	-	1	69	c.69C>T	c.(67-69)TTC>TTT	p.F23F		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	23	Extracellular (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GCCAGCTCTGGAAACTGGGGA	0.507													5	1					0	0	0.000602	0	0
OR56A4	120793	broad.mit.edu	37	11	6023832	6023833	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6023832_6023833GG>AA	uc010qzv.1	-	1	546_547	c.546_547CC>TT	c.(544-549)TGCCAT>TGTTAT	p.H183Y		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTCAATGGATGGCAGATGGCCA	0.495													11	10					0	0	0.004672	0	0
OR56A4	120793	broad.mit.edu	37	11	6024001	6024001	+	Silent	SNP	G	A	A	rs141110808		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6024001G>A	uc010qzv.1	-	1	378	c.378C>T	c.(376-378)ATC>ATT	p.I126I		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCAGAGCACGATGTCCAGCA	0.587													24	26					0	0	0.004656	0	0
OR56B4	196335	broad.mit.edu	37	11	6129543	6129543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6129543G>A	uc010qzx.1	+	1	535	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTCCAGGAATGAAATCGAGCA	0.483													50	61					0	0	0.003610	0	0
OR52B2	255725	broad.mit.edu	37	11	6190685	6190685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6190685G>A	uc010qzy.1	-	1	872	c.872C>T	c.(871-873)CCC>CTC	p.P291L		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	291	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATAGACAATGGGGTTCAGCAT	0.473													29	29					0	0	0.005443	0	0
TPP1	1200	broad.mit.edu	37	11	6637259	6637259	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6637259G>A	uc001mel.1	-	9	1183	c.1122C>T	c.(1120-1122)TTC>TTT	p.F374F	TPP1_uc001mek.1_Silent_p.F131F	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	374					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		AGGTAGGGCGGAACTGGTGTC	0.493													22	24					0	0	0.005443	0	0
OR2AG2	338755	broad.mit.edu	37	11	6789889	6789889	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6789889C>T	uc001meq.1	-	1	300	c.300G>A	c.(298-300)CAG>CAA	p.Q100Q		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	100	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCAGGAACATCTGAAGTGCAC	0.512													26	44					0	0	0.001271	0	0
OR10A2	341276	broad.mit.edu	37	11	6891759	6891759	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6891759G>A	uc001meu.1	+	1	774	c.774G>A	c.(772-774)AAG>AAA	p.K258K		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	258	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CTGAGGGCAAGAAGCTGCTAT	0.438													43	59					0	0	0.003610	0	0
ZNF215	7762	broad.mit.edu	37	11	6953620	6953620	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6953620G>A	uc001mey.2	+	3	705	c.117G>A	c.(115-117)GTG>GTA	p.V39V	ZNF215_uc010raw.1_Silent_p.V39V|ZNF215_uc010rax.1_5'UTR|ZNF215_uc001mez.1_Silent_p.V39V	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	39					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		ACCCCGTCGTGGAGACACATG	0.493													33	63					0	0	0.001706	0	0
ZNF215	7762	broad.mit.edu	37	11	6953622	6953622	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:6953622A>T	uc001mey.2	+	3	707	c.119A>T	c.(118-120)GAG>GTG	p.E40V	ZNF215_uc010raw.1_Missense_Mutation_p.E40V|ZNF215_uc010rax.1_5'UTR|ZNF215_uc001mez.1_Missense_Mutation_p.E40V	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	40					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		CCCGTCGTGGAGACACATGAC	0.493													32	64					0	0	0.001485	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111038	7111038	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:7111038G>A	uc001mfc.2	+	1	874	c.687G>A	c.(685-687)CGG>CGA	p.R229R		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	229	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCGAACCCCGGGGTTTTGCCC	0.697													6	3					0	0	0.001168	0	0
SYT9	143425	broad.mit.edu	37	11	7324533	7324533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:7324533C>T	uc001mfe.2	+	2	646	c.409C>T	c.(409-411)CCC>TCC	p.P137S	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	137	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CCCTGACATTCCCCTCTCCAC	0.612													9	7					0	0	0.001368	0	0
SYT9	143425	broad.mit.edu	37	11	7334794	7334794	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:7334794G>A	uc001mfe.2	+	3	903	c.666G>A	c.(664-666)GGG>GGA	p.G222G	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_Intron	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	222	Cytoplasmic (Potential).|C2 1.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		AGGCTTGTGGGAAACTGAACT	0.413													19	29					0	0	0.000958	0	0
OVCH2	341277	broad.mit.edu	37	11	7721935	7721935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:7721935C>T	uc010rbf.1	-	7	809	c.809G>A	c.(808-810)AGA>AAA	p.R270K		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		CACATTGTTTCTCCAGCCTCG	0.507													12	9					0	0	0.000978	0	0
OR5P3	120066	broad.mit.edu	37	11	7846909	7846909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:7846909C>T	uc010rbg.1	-	1	611	c.611G>A	c.(610-612)GGA>GAA	p.G204E		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AATGATAGATCCAGAAGAGAT	0.423													22	39					0	0	0.002780	0	0
OR10A6	390093	broad.mit.edu	37	11	7949824	7949824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:7949824G>A	uc010rbh.1	-	1	386	c.386C>T	c.(385-387)CCT>CTT	p.P129L		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GTAGTTGAGAGGATGGCAAAT	0.368													22	38					0	0	0.002299	0	0
NLRP10	338322	broad.mit.edu	37	11	7981729	7981729	+	Missense_Mutation	SNP	G	A	A	rs77351963		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:7981729G>A	uc001mfv.1	-	2	1447	c.1430C>T	c.(1429-1431)TCT>TTT	p.S477F		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	477	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CACCAGGTAAGACATGGCATG	0.517													34	44					0	0	0.003755	0	0
DENND5A	23258	broad.mit.edu	37	11	9161242	9161242	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:9161242G>A	uc001mhl.2	-	23	4095	c.3840C>T	c.(3838-3840)TCC>TCT	p.S1280S	DENND5A_uc001mhk.2_Silent_p.S623S|DENND5A_uc010rbw.1_3'UTR	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	1280	RUN 2.									liver(1)	1						CCTTGACAAGGGACGTCTCCA	0.507													8	10					0	0	0.004482	0	0
AMPD3	272	broad.mit.edu	37	11	10503757	10503757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:10503757G>A	uc001mio.1	+	4	909	c.574G>A	c.(574-576)GAA>AAA	p.E192K	AMPD3_uc010rbz.1_Missense_Mutation_p.E33K|AMPD3_uc001min.1_Missense_Mutation_p.E201K|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfx.1_Missense_Mutation_p.E192K|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.E199K|AMPD3_uc009yfy.2_Missense_Mutation_p.E192K	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	192					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		TGCACCTCCGGAAGAGGGCCT	0.607													22	25					0	0	0.003954	0	0
AMPD3	272	broad.mit.edu	37	11	10508849	10508849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:10508849G>A	uc001mio.1	+	6	1212	c.877G>A	c.(877-879)GAA>AAA	p.E293K	AMPD3_uc010rbz.1_Missense_Mutation_p.E134K|AMPD3_uc001min.1_Missense_Mutation_p.E302K|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.E300K|AMPD3_uc009yfy.2_Missense_Mutation_p.E293K	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	293					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		GATGTTAAACGAAATGTCCGA	0.498													44	70					0	0	0.002522	0	0
MRVI1	10335	broad.mit.edu	37	11	10622540	10622540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:10622540C>T	uc010rcc.1	-	15	2328	c.1942G>A	c.(1942-1944)GAG>AAG	p.E648K	MRVI1_uc001miw.2_Missense_Mutation_p.E639K|MRVI1_uc010rcb.1_Missense_Mutation_p.E640K|MRVI1_uc009ygb.1_Missense_Mutation_p.E333K|MRVI1_uc001mix.2_Missense_Mutation_p.E333K|MRVI1_uc001miz.2_Missense_Mutation_p.E557K|MRVI1_uc009ygc.1_Missense_Mutation_p.E557K|MRVI1_uc010rcd.1_Missense_Mutation_p.E442K|MRVI1_uc009ygd.1_Missense_Mutation_p.E333K|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	621					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		TGGTCCTTCTCATACGTCCTC	0.522													75	112					0	0	0.003610	0	0
EIF4G2	1982	broad.mit.edu	37	11	10824772	10824772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:10824772G>A	uc001mjc.2	-	10	1300	c.883C>T	c.(883-885)CGT>TGT	p.R295C	EIF4G2_uc001mjb.2_Missense_Mutation_p.R89C|EIF4G2_uc009ygf.2_Missense_Mutation_p.R89C|EIF4G2_uc001mjd.2_Missense_Mutation_p.R295C|EIF4G2_uc001mjf.1_Missense_Mutation_p.R89C|SNORD97_uc009yge.2_5'Flank	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	295	MIF4G.				cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		AGCAGGAAACGAATCCTTGCT	0.328													21	19					0	0	0.003954	0	0
MICAL2	9645	broad.mit.edu	37	11	12245040	12245040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:12245040C>T	uc001mjz.2	+	12	1820	c.1532C>T	c.(1531-1533)TCC>TTC	p.S511F	MICAL2_uc010rch.1_Missense_Mutation_p.S511F|MICAL2_uc001mka.2_Missense_Mutation_p.S511F|MICAL2_uc010rci.1_Missense_Mutation_p.S511F|MICAL2_uc001mkb.2_Missense_Mutation_p.S511F|MICAL2_uc001mkc.2_Missense_Mutation_p.S511F|MICAL2_uc001mkd.2_Missense_Mutation_p.S340F|MICAL2_uc010rcj.1_5'UTR	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	511						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GTCAACCTCTCCAGGAAGGGT	0.572													33	47					0	0	0.003755	0	0
PTH	5741	broad.mit.edu	37	11	13514345	13514345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:13514345G>A	uc001mlb.2	-	2	173	c.58C>T	c.(58-60)CTT>TTT	p.L20F		NM_000315	NP_000306	P01270	PTHY_HUMAN	parathyroid hormone preproprotein	20					bone resorption|cAMP metabolic process|cell-cell signaling|cellular calcium ion homeostasis|cellular macromolecule biosynthetic process|induction of apoptosis by hormones|positive regulation of cAMP biosynthetic process|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|skeletal system development		hormone activity|peptide hormone receptor binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(625;0.00116)|Epithelial(150;0.0357)|LUSC - Lung squamous cell carcinoma(625;0.0836)		GATTTTGTAAGAAAACAAATT	0.338													15	20					0	0	0.004990	0	0
SOX6	55553	broad.mit.edu	37	11	16071343	16071343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:16071343G>A	uc001mme.2	-	11	1465	c.1432C>T	c.(1432-1434)CCT>TCT	p.P478S	SOX6_uc001mmd.2_Missense_Mutation_p.P427S|SOX6_uc001mmf.2_Missense_Mutation_p.P424S|SOX6_uc001mmg.2_Missense_Mutation_p.P465S	NM_001145819	NP_001139291	P35712	SOX6_HUMAN	SRY (sex determining region Y)-box 6 isoform 4	465					muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3						ATGGGGCTAGGGATGCTGCTT	0.493													99	115					0	0	0.003610	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17135978	17135978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17135978G>A	uc001mmq.3	-	19	3317	c.3251C>T	c.(3250-3252)TCC>TTC	p.S1084F	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Missense_Mutation_p.S704F|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	1084					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	CTGAAAAAAGGACTGTACTCG	0.318													35	50					0	0	0.005524	0	0
ABCC8	6833	broad.mit.edu	37	11	17426127	17426127	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17426127G>A	uc001mnc.2	-	28	3615	c.3489C>T	c.(3487-3489)TTC>TTT	p.F1163F		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1163	Helical; Name=15; (By similarity).|ABC transmembrane type-1 2.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGGCCACGAGGAACACAGGTG	0.627													45	75					0	0	0.003610	0	0
ABCC8	6833	broad.mit.edu	37	11	17436075	17436075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17436075G>A	uc001mnc.2	-	19	2500	c.2374C>T	c.(2374-2376)CCC>TCC	p.P792S		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	792	ABC transporter 1.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TTGTTGAAGGGACTCTCAAAG	0.582													118	174					0	0	0.003610	0	0
USH1C	10083	broad.mit.edu	37	11	17542432	17542432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17542432G>A	uc001mnf.2	-	14	1304	c.1195C>T	c.(1195-1197)CTT>TTT	p.L399F	USH1C_uc001mne.2_Missense_Mutation_p.L399F|USH1C_uc009yhb.2_Missense_Mutation_p.L380F|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.L363F	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	399					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						GGCTTGCGAAGGGGTACTGGG	0.522													82	90					0	0	0.003610	0	0
USH1C	10083	broad.mit.edu	37	11	17542541	17542541	+	Silent	SNP	C	T	T	rs147727890		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17542541C>T	uc001mnf.2	-	14	1195	c.1086G>A	c.(1084-1086)CAG>CAA	p.Q362Q	USH1C_uc001mne.2_Silent_p.Q362Q|USH1C_uc009yhb.2_Silent_p.Q343Q|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Silent_p.Q326Q	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	362	Potential.				equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						CCTCTACAATCCTAAAATGAG	0.522													89	179					0	0	0.003610	0	0
USH1C	10083	broad.mit.edu	37	11	17542924	17542924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17542924C>T	uc001mnf.2	-	13	1163	c.1054G>A	c.(1054-1056)GAA>AAA	p.E352K	USH1C_uc001mne.2_Missense_Mutation_p.E352K|USH1C_uc009yhb.2_Missense_Mutation_p.E333K|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.E316K	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	352	Potential.				equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						CTCTCATTTTCCTCTGCTGCC	0.493													40	59					0	0	0.002222	0	0
USH1C	10083	broad.mit.edu	37	11	17552965	17552965	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17552965G>A	uc001mnf.2	-	3	338	c.229C>T	c.(229-231)CTG>TTG	p.L77L	USH1C_uc001mne.2_Silent_p.L77L|USH1C_uc009yhb.2_Silent_p.L77L|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Silent_p.L41L	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	77					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						CGGGGGGTCAGCTGATCATAT	0.632													9	8					0	0	0.004482	0	0
USH1C	10083	broad.mit.edu	37	11	17553056	17553056	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17553056C>T	uc001mnf.2	-	3	247	c.138G>A	c.(136-138)CTG>CTA	p.L46L	USH1C_uc001mne.2_Silent_p.L46L|USH1C_uc009yhb.2_Silent_p.L46L|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Silent_p.L10L	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	46					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						TGACCAGCTTCAGGTCTCCCA	0.607													10	14					0	0	0.000673	0	0
KCNC1	3746	broad.mit.edu	37	11	17793712	17793712	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:17793712G>A	uc001mnk.3	+	2	1126	c.1071G>A	c.(1069-1071)CTG>CTA	p.L357L	KCNC1_uc009yhc.1_Silent_p.L357L	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	357	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						TGGGCGTGCTGATCTTCGCCA	0.612													10	14					0	0	0.000673	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955396	18955396	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:18955396G>A	uc001mpg.2	-	1	1154	c.936C>T	c.(934-936)ATC>ATT	p.I312I		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	312	Cytoplasmic (Potential).			EEI -> QET (in Ref. 2; AAL86880).	acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						ACAGCTCCAGGATTTCCTCAG	0.562													24	41					0	0	0.002299	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955510	18955510	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:18955510G>A	uc001mpg.2	-	1	1040	c.822C>T	c.(820-822)TTC>TTT	p.F274F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	274	Helical; Name=7; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						AGGAGCCCACGAAGAAGTAAA	0.512													19	61					0	0	0.005443	0	0
CSRP3	8048	broad.mit.edu	37	11	19204265	19204265	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:19204265C>T	uc001mpk.2	-	6	654	c.537G>A	c.(535-537)ACG>ACA	p.T179T		NM_003476	NP_003467	P50461	CSRP3_HUMAN	cysteine and glycine-rich protein 3	179	Gly-rich.				cell differentiation|skeletal muscle tissue development	cytoskeleton|nucleus	protein binding|zinc ion binding				0						ACCCAATACCCGTGGGGCCAA	0.438													41	44					0	0	0.003214	0	0
ANO5	203859	broad.mit.edu	37	11	22301201	22301201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:22301201G>A	uc001mqi.2	+	22	2949	c.2632G>A	c.(2632-2634)GAT>AAT	p.D878N	ANO5_uc001mqj.2_Missense_Mutation_p.D877N	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	878	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						GATTCTCCATGATTTTGAGCT	0.348													29	42					0	0	0.001271	0	0
ANO5	203859	broad.mit.edu	37	11	22301266	22301266	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:22301266C>A	uc001mqi.2	+	22	3014	c.2697C>A	c.(2695-2697)GTC>GTA	p.V899V	ANO5_uc001mqj.2_Silent_p.V898V	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	899	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						CCAAGCATGTCATGATTGAGG	0.368													27	28					7.01153e-11	1.21328e-10	0.001271	1	0
SLC17A6	57084	broad.mit.edu	37	11	22387233	22387233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:22387233G>A	uc001mqk.2	+	7	1302	c.889G>A	c.(889-891)GAA>AAA	p.E297K		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	297	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						AGGTGCAATGGAAGTAAGAAA	0.373													20	45					0	0	0.001523	0	0
SLC17A6	57084	broad.mit.edu	37	11	22399064	22399064	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:22399064G>A	uc001mqk.2	+	12	1940	c.1527G>A	c.(1525-1527)GAG>GAA	p.E509E		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	509	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						CAGACCCGGAGGAAACAAGTG	0.408													16	25					0	0	0.003163	0	0
MUC15	143662	broad.mit.edu	37	11	26587249	26587249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:26587249C>T	uc001mqx.2	-	2	423	c.157G>A	c.(157-159)GCA>ACA	p.A53T	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Missense_Mutation_p.A80T|MUC15_uc001mqy.2_Missense_Mutation_p.A80T	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	53	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTTAAGTTTGCTTCACTTTCC	0.368													27	23					0	0	0.003954	0	0
ANO3	63982	broad.mit.edu	37	11	26620542	26620542	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:26620542C>T	uc001mqt.3	+	16	1813	c.1668C>T	c.(1666-1668)TTC>TTT	p.F556F	ANO3_uc010rdr.1_Silent_p.F540F|ANO3_uc010rds.1_Silent_p.F395F|ANO3_uc010rdt.1_Silent_p.F410F	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	556	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GAATATTCTTCATGGTAAAGT	0.378													19	27					0	0	0.001523	0	0
ANO3	63982	broad.mit.edu	37	11	26655756	26655756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:26655756C>T	uc001mqt.3	+	19	2024	c.1879C>T	c.(1879-1881)CCT>TCT	p.P627S	ANO3_uc010rdr.1_Missense_Mutation_p.P611S|ANO3_uc010rds.1_Missense_Mutation_p.P466S|ANO3_uc010rdt.1_Missense_Mutation_p.P481S	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	627	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTTAGAATATCCTCGAACAGA	0.269													9	17					0	0	0.001368	0	0
BDNF	627	broad.mit.edu	37	11	27679990	27679991	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:27679990_27679991CC>TT	uc010rdu.1	-	2	972_973	c.121_122GG>AA	c.(121-123)GGG>AAG	p.G41K	BDNFOS_uc001mrm.2_RNA|BDNFOS_uc009yij.2_RNA|BDNFOS_uc009yik.2_RNA|BDNFOS_uc009yil.2_RNA|BDNFOS_uc001mrp.2_RNA|BDNFOS_uc009yim.2_RNA|BDNFOS_uc009yin.2_RNA|BDNFOS_uc009yio.2_RNA|BDNFOS_uc009yip.2_RNA|BDNFOS_uc001mrn.2_RNA|BDNFOS_uc009yiq.2_RNA|BDNFOS_uc001mro.2_RNA|BDNFOS_uc009yir.2_RNA|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_RNA|BDNFOS_uc009yiu.2_RNA|BDNFOS_uc009yiv.2_RNA|BDNFOS_uc009yiw.2_RNA|BDNFOS_uc009yix.2_RNA|BDNFOS_uc009yiy.2_RNA|BDNFOS_uc009yiz.2_RNA|BDNFOS_uc001mrq.3_RNA|BDNFOS_uc001mrr.3_RNA|BDNFOS_uc009yja.2_RNA|BDNFOS_uc009yjb.2_RNA|BDNF_uc010rdv.1_Missense_Mutation_p.G41K|BDNF_uc001mrt.2_Missense_Mutation_p.G56K|BDNF_uc010rdw.1_Missense_Mutation_p.G41K|BDNF_uc009yjd.2_Missense_Mutation_p.G41K|BDNF_uc001mru.2_Missense_Mutation_p.G41K|BDNF_uc010rdx.1_Missense_Mutation_p.G41K|BDNF_uc010rdy.1_Missense_Mutation_p.G41K|BDNF_uc009yjg.2_Missense_Mutation_p.G41K|BDNF_uc009yje.2_Missense_Mutation_p.G123K|BDNF_uc009yjf.2_Missense_Mutation_p.G70K|BDNF_uc001mrv.2_Missense_Mutation_p.G41K|BDNF_uc001mrw.3_Missense_Mutation_p.G41K|BDNF_uc001mrx.2_Missense_Mutation_p.G41K|BDNF_uc001mry.3_Missense_Mutation_p.G41K|BDNF_uc001mrz.3_Missense_Mutation_p.G41K|BDNF_uc001msa.2_Missense_Mutation_p.G49K	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	41						extracellular region	growth factor activity				0						CTCCAGAGTCCCATGGGTCCGC	0.52													44	55					0	0	0.004672	0	0
KIF18A	81930	broad.mit.edu	37	11	28058204	28058204	+	Silent	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:28058204A>C	uc001msc.2	-	14	2138	c.1956T>G	c.(1954-1956)TCT>TCG	p.S652S		NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	652					blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						TTCCACCTGAAGATGAGCCTA	0.333													20	19					0	0	0.001216	0	0
KCNA4	3739	broad.mit.edu	37	11	30032619	30032619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:30032619C>T	uc001msk.2	-	2	2759	c.1607G>A	c.(1606-1608)GGG>GAG	p.G536E		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	536						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AATCTTGCCCCCTACAGTGAT	0.498													19	27					0	0	0.001216	0	0
KCNA4	3739	broad.mit.edu	37	11	30032811	30032811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:30032811C>T	uc001msk.2	-	2	2567	c.1415G>A	c.(1414-1416)AGA>AAA	p.R472K		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	472						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CATGCTGGCTCTGAGGGTGTG	0.522													14	34					0	0	0.002450	0	0
KCNA4	3739	broad.mit.edu	37	11	30033653	30033653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:30033653C>T	uc001msk.2	-	2	1725	c.573G>A	c.(571-573)ATG>ATA	p.M191I		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	191						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCAGAGTTTTCATTTGGGTCT	0.493													17	25					0	0	0.000743	0	0
FSHB	2488	broad.mit.edu	37	11	30255338	30255338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:30255338G>A	uc001msl.2	+	3	450	c.381G>A	c.(379-381)ATG>ATA	p.M127I	FSHB_uc001msm.2_Missense_Mutation_p.M127I|FSHB_uc001msn.2_Missense_Mutation_p.M127I	NM_000510	NP_000501	P01225	FSHB_HUMAN	follicle stimulating hormone, beta polypeptide	127					cellular nitrogen compound metabolic process|female gamete generation|female pregnancy|ovarian follicle development|peptide hormone processing|progesterone biosynthetic process|spermatogenesis|transforming growth factor beta receptor signaling pathway	cytoplasm|extracellular region|soluble fraction	follicle-stimulating hormone activity|protein heterodimerization activity			ovary(3)	3					Follitropin beta(DB00066)|Thyrotropin Alfa(DB00024)|Urofollitropin(DB00094)	TTGGTGAAATGAAAGAATAAA	0.512													14	23					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	11	30902777	30902777	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:30902777G>A	uc001mss.1	-	15		c.2255C>T			uc009yjk.1_Nonsense_Mutation_p.Q1166*|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		TCCCAGGACTGAATTGGCTCT	0.498													25	30					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	11	30928197	30928197	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:30928197C>T	uc001mss.1	-	8		c.1097G>A			uc009yjk.1_Missense_Mutation_p.E780K|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		AGTCCTTTCTCTGTTCTCATG	0.453													12	21					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	11	30946894	30946894	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:30946894C>T	uc001mss.1	-	1		c.62G>A			uc009yjk.1_Missense_Mutation_p.E435K					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		GCAAATATTTCCTTCCCCTTT	0.348													58	99					0	0	0.003610	0	0
WT1	7490	broad.mit.edu	37	11	32414222	32414222	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:32414222C>T	uc001mtn.1	-	8	1525	c.1329G>A	c.(1327-1329)AGG>AGA	p.R443R	WT1_uc001mtl.1_Silent_p.R231R|WT1_uc001mtm.1_Silent_p.R214R|WT1_uc001mto.1_Silent_p.R443R|WT1_uc001mtp.1_Silent_p.R426R|WT1_uc001mtq.1_Silent_p.R426R|WT1_uc009yjs.1_RNA	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	375	C2H2-type 2.|Important for interaction with target DNA.				adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding		EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			CTGTATGTCTCCTTTGGTGTC	0.438			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				20	36					0	0	0.002299	0	0
CCDC73	493860	broad.mit.edu	37	11	32781685	32781685	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:32781685C>T	uc001mtv.2	-	2	149	c.105G>A	c.(103-105)CTG>CTA	p.L35L	CCDC73_uc001mtw.1_Silent_p.L35L|CCDC73_uc009yjt.2_Silent_p.L35L	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	35										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					CTAATGCCTCCAGTAAACTTG	0.294													67	134					0	0	0.003610	0	0
QSER1	79832	broad.mit.edu	37	11	32979608	32979608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:32979608C>T	uc001mty.2	+	8	4825	c.4558C>T	c.(4558-4560)CAT>TAT	p.H1520Y	QSER1_uc001mtz.1_Missense_Mutation_p.H1281Y|QSER1_uc001mua.2_Missense_Mutation_p.H1025Y	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	1520										ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					TCCTGAGATCCATACTAGTAG	0.418													9	8					0	0	0.000978	0	0
LMO2	4005	broad.mit.edu	37	11	33880941	33880941	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:33880941C>T	uc001mve.2	-	3	877	c.438G>A	c.(436-438)CAG>CAA	p.Q146Q	LMO2_uc001mvc.2_Silent_p.Q139Q|LMO2_uc001mvd.2_Silent_p.Q139Q|LMO2_uc010rel.1_Silent_p.Q146Q|LMO2_uc010rem.1_Silent_p.Q215Q	NM_001142316	NP_001135788	P25791	RBTN2_HUMAN	LIM domain only 2 isoform 2	146	LIM zinc-binding 2.				multicellular organismal development	nucleus	protein binding|zinc ion binding			lung(1)	1						CGTAGATGTCCTGTTCGCACA	0.502			T	TRD@	T-ALL								11	20					0	0	0.002450	0	0
PAMR1	25891	broad.mit.edu	37	11	35463162	35463162	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:35463162G>A	uc001mwg.2	-	7	943	c.900C>T	c.(898-900)ATC>ATT	p.I300I	PAMR1_uc001mwf.2_Silent_p.I317I|PAMR1_uc010rew.1_Silent_p.I189I|PAMR1_uc010rex.1_Silent_p.I260I	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	300	Sushi 1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						GGCGTCCGTTGATAAGCCCAG	0.453													42	47					0	0	0.002522	0	0
RAG1	5896	broad.mit.edu	37	11	36596859	36596859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:36596859G>A	uc001mwu.3	+	2	2129	c.2005G>A	c.(2005-2007)GAG>AAG	p.E669K	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	669			E -> G (in OS).		histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GTCTGACCACGAGACGCTGAC	0.493									Familial_Hemophagocytic_Lymphohistiocytosis				14	14					0	0	0.001855	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137831	40137831	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:40137831C>T	uc001mxa.1	-	2	1976	c.12G>A	c.(10-12)AAG>AAA	p.K4K	LRRC4C_uc001mxc.1_5'UTR|LRRC4C_uc001mxd.1_5'UTR|LRRC4C_uc001mxb.1_5'UTR	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	4					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GTAAGGTCATCTTGTTCAACA	0.393													21	26					0	0	0.002299	0	0
EXT2	2132	broad.mit.edu	37	11	44146474	44146474	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:44146474C>T	uc001mxz.2	+	5	1213	c.879C>T	c.(877-879)GTC>GTT	p.V293V	EXT2_uc010rfo.1_Silent_p.V321V|EXT2_uc001mxy.2_Silent_p.V306V|EXT2_uc009ykt.2_Silent_p.V293V|EXT2_uc001mya.2_Silent_p.V326V	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	293	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						CAGAGGGTGTCCTTTCTGTCC	0.517			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				15	29					0	0	0.000743	0	0
EXT2	2132	broad.mit.edu	37	11	44219521	44219521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:44219521C>T	uc001mxz.2	+	9	1782	c.1448C>T	c.(1447-1449)TCC>TTC	p.S483F	EXT2_uc010rfo.1_Missense_Mutation_p.S511F|EXT2_uc001mxy.2_Missense_Mutation_p.S496F|EXT2_uc009ykt.2_Missense_Mutation_p.S493F|EXT2_uc001mya.2_Missense_Mutation_p.S516F	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	483	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						CCCAGTCTATCCAAACTACTT	0.488			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				19	47					0	0	0.002780	0	0
PEX16	9409	broad.mit.edu	37	11	45935740	45935740	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:45935740G>A	uc001nbu.2	-	8	1021	c.709C>T	c.(709-711)CTG>TTG	p.L237L	PEX16_uc001nbt.2_Silent_p.L237L	NM_004813	NP_004804	Q9Y5Y5	PEX16_HUMAN	peroxisomal biogenesis factor 16 isoform 1	237	Interaction with PEX19.|Cytoplasmic (Potential).				ER-dependent peroxisome organization|peroxisome membrane biogenesis|protein import into peroxisome matrix|protein import into peroxisome membrane	endoplasmic reticulum membrane|integral to peroxisomal membrane	protein C-terminus binding			ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.223)		TGACCCCACAGGCCCAGGCTG	0.642													5	7					0	0	0.000602	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45947834	45947834	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:45947834G>A	uc001nbv.1	+	8	1055	c.944G>A	c.(943-945)TGG>TAG	p.W315*	GYLTL1B_uc001nbw.1_Nonsense_Mutation_p.W284*|GYLTL1B_uc001nbx.1_Nonsense_Mutation_p.W315*|GYLTL1B_uc001nby.1_5'Flank|GYLTL1B_uc001nbz.1_5'Flank	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	315	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		CCTTGTGTCTGGAATGTGCAG	0.607													25	36					0	0	0.004656	0	0
DGKZ	8525	broad.mit.edu	37	11	46388891	46388891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:46388891C>T	uc001ncn.1	+	3	904	c.779C>T	c.(778-780)ACC>ATC	p.T260I	DGKZ_uc001nch.1_Missense_Mutation_p.T88I|DGKZ_uc010rgq.1_Missense_Mutation_p.T37I|DGKZ_uc001ncj.1_Missense_Mutation_p.T37I|DGKZ_uc010rgr.1_Missense_Mutation_p.T37I|DGKZ_uc001nck.1_5'UTR|DGKZ_uc001ncl.2_Missense_Mutation_p.T71I|DGKZ_uc001ncm.2_Missense_Mutation_p.T71I|DGKZ_uc009yky.1_Missense_Mutation_p.T71I|DGKZ_uc010rgs.1_Missense_Mutation_p.T71I|DGKZ_uc001nci.1_Missense_Mutation_p.T37I	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	260	Poly-Pro.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		CCTCCGCCCACCCCTGGGGCC	0.662													12	15					0	0	0.004007	0	0
MADD	8567	broad.mit.edu	37	11	47350616	47350616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:47350616C>T	uc001ner.1	+	36	5050	c.4859C>T	c.(4858-4860)TCC>TTC	p.S1620F	MADD_uc001neq.2_Missense_Mutation_p.S1561F|MADD_uc001nev.1_3'UTR|MADD_uc001nes.1_Missense_Mutation_p.S1538F|MADD_uc001net.1_Missense_Mutation_p.S1581F|MADD_uc009yln.1_Missense_Mutation_p.S1514F|MADD_uc001neu.1_Missense_Mutation_p.S1518F|MADD_uc001nex.2_3'UTR|MADD_uc001nez.2_Missense_Mutation_p.S1517F|MADD_uc001new.2_Missense_Mutation_p.S1560F	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1620					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity	p.S1620F(2)		ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		ATCTGCTACTCCGTATTATGT	0.537													32	56					0	0	0.001287	0	0
PSMC3	5702	broad.mit.edu	37	11	47445718	47445718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:47445718G>A	uc001nfh.2	-	6	664	c.470C>T	c.(469-471)TCC>TTC	p.S157F	PSMC3_uc009ylr.1_Missense_Mutation_p.S115F	NM_002804	NP_002795	P17980	PRS6A_HUMAN	proteasome 26S ATPase subunit 3	157					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			ovary(4)	4				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GATCAGATAGGAGTCTTTGTT	0.567													31	54					0	0	0.003271	0	0
AGBL2	79841	broad.mit.edu	37	11	47690428	47690428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:47690428C>T	uc001ngg.2	-	14	2279	c.2179G>A	c.(2179-2181)GGT>AGT	p.G727S	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Missense_Mutation_p.G689S|AGBL2_uc001ngh.1_3'UTR	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	727					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						ACAGGAAGACCATCTGAGAGA	0.398													42	85					0	0	0.003610	0	0
FNBP4	23360	broad.mit.edu	37	11	47744678	47744678	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:47744678A>T	uc009ylv.2	-	15	2808	c.2655T>A	c.(2653-2655)GCT>GCA	p.A885A	FNBP4_uc001ngi.2_Silent_p.A199A|FNBP4_uc001ngj.2_Silent_p.A792A	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	885										ovary(1)	1						GCAATGAGGGAGCAGTCACTC	0.408													10	15					0	0	0.000443	0	0
OR4B1	119765	broad.mit.edu	37	11	48238673	48238673	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:48238673C>T	uc010rhs.1	+	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						TCTTCCACTTCTTTGGGGTTG	0.423													54	84					0	0	0.003610	0	0
OR4S1	256148	broad.mit.edu	37	11	48328686	48328686	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:48328686G>A	uc010rhu.1	+	1	912	c.912G>A	c.(910-912)AGG>AGA	p.R304R		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGTCAAGAGGAGCTTAGGGG	0.418													14	14					0	0	0.001855	0	0
OR4C3	256144	broad.mit.edu	37	11	48346606	48346606	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:48346606C>T	uc010rhv.1	+	1	114	c.114C>T	c.(112-114)TTC>TTT	p.F38F		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CAGAATTTTTCATGCTGGGGC	0.418													34	49					0	0	0.002836	0	0
OR4C3	256144	broad.mit.edu	37	11	48346951	48346951	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:48346951G>A	uc010rhv.1	+	1	459	c.459G>A	c.(457-459)AAG>AAA	p.K153K		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCATCTGTAAGCCCCTGCACA	0.522													36	54					0	0	0.004878	0	0
FOLH1	2346	broad.mit.edu	37	11	49186324	49186324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:49186324C>T	uc001ngy.2	-	13	1634	c.1373G>A	c.(1372-1374)GGA>GAA	p.G458E	FOLH1_uc001ngz.2_Missense_Mutation_p.G458E|FOLH1_uc009yly.2_Missense_Mutation_p.G443E|FOLH1_uc009ylz.2_Missense_Mutation_p.G443E|FOLH1_uc009yma.2_Missense_Mutation_p.G150E	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	458	NAALADase.|Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	AGTGTAGTTTCCTGAAAAATA	0.264													11	27					0	0	0.000673	0	0
LOC440040	440040	broad.mit.edu	37	11	49805494	49805495	+	Missense_Mutation	DNP	CT	TG	TG			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:49805494_49805495CT>TG	uc010rhy.1	+	3	1169_1170	c.691_692CT>TG	c.(691-693)CTG>TGG	p.L231W	LOC440040_uc009ymb.2_Missense_Mutation_p.L231W	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						TGATAAGCTGCTGAAGAAGCTC	0.535													12	9					0	0	0.004672	0	0
OR4C13	283092	broad.mit.edu	37	11	49974138	49974138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:49974138C>T	uc010rhz.1	+	1	164	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TCACTGAGATCCCCCATGTAC	0.428													75	113					0	0	0.003610	0	0
OR4C13	283092	broad.mit.edu	37	11	49974880	49974880	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:49974880G>A	uc010rhz.1	+	1	906	c.906G>A	c.(904-906)AGG>AGA	p.R302R		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TGTGTAGTAGGAAAGCTATTT	0.383													17	10					0	0	0.000958	0	0
OR4C12	283093	broad.mit.edu	37	11	50003373	50003373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:50003373G>A	uc010ria.1	-	1	665	c.665C>T	c.(664-666)TCT>TTT	p.S222F		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GTTCTTTAAAGATCTCAAGAT	0.403													19	25					0	0	0.001216	0	0
OR4C12	283093	broad.mit.edu	37	11	50003708	50003708	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:50003708G>A	uc010ria.1	-	1	330	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TCAGCAGGATGATCTCAGTAG	0.458													56	73					0	0	0.003610	0	0
LOC646813	646813	broad.mit.edu	37	11	50375320	50375320	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:50375320C>T	uc001nhe.2	+	3		c.211C>T			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						ACTATTGATACCAACATGTTC	0.373													18	33					0	0	0.000743	0	0
LOC646813	646813	broad.mit.edu	37	11	50375370	50375370	+	RNA	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:50375370G>T	uc001nhe.2	+	3		c.261G>T			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						TGAAGTTTATGGGAGGACTTA	0.378													18	31					9.16793e-09	1.58386e-08	0.004990	1	0
OR4C46	119749	broad.mit.edu	37	11	51515761	51515761	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:51515761C>T	uc010ric.1	+	1	480	c.480C>T	c.(478-480)TTC>TTT	p.F160F		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGATCCTCTTCATCTTCCAAT	0.468													30	33					0	0	0.002836	0	0
Unknown	0	broad.mit.edu	37	11	55063165	55063165	+	RNA	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55063165T>A	uc001nhl.1	-	3		c.470A>T								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		ACTCACATAATCCTGCAGTGA	0.353													6	9					0	0	0.001168	0	0
OR4A16	81327	broad.mit.edu	37	11	55111121	55111121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55111121G>A	uc010rie.1	+	1	445	c.445G>A	c.(445-447)GGA>AGA	p.G149R		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						GGCCATGATTGGAGGTTTTGT	0.458													39	59					0	0	0.001287	0	0
OR4A15	81328	broad.mit.edu	37	11	55136058	55136058	+	Silent	SNP	G	A	A	rs141225150	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55136058G>A	uc010rif.1	+	1	699	c.699G>A	c.(697-699)GCG>GCA	p.A233A		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	233	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGGAGGAGCGATTTGTGCTG	0.413													33	45					0	0	0.002096	0	0
OR4C15	81309	broad.mit.edu	37	11	55322523	55322523	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55322523C>T	uc010rig.1	+	1	741	c.741C>T	c.(739-741)ATC>ATT	p.I247I		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATACTCACATCTTTGGCCTCA	0.448										HNSCC(20;0.049)			13	31					0	0	0.001368	0	0
OR4C16	219428	broad.mit.edu	37	11	55340049	55340049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55340049G>A	uc010rih.1	+	1	446	c.446G>A	c.(445-447)GGA>GAA	p.G149E		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				GCCTGGGTGGGATCCTGTGTG	0.502													36	65					0	0	0.005524	0	0
OR4C16	219428	broad.mit.edu	37	11	55340247	55340247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55340247C>T	uc010rih.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				CTAATATTCTCCTATGTCATC	0.418													23	30					0	0	0.002299	0	0
OR4C11	219429	broad.mit.edu	37	11	55371018	55371018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55371018G>A	uc010rii.1	-	1	832	c.832C>T	c.(832-834)CCC>TCC	p.P278S		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTGAGAAAGGGTGTTCCAATA	0.398													35	26					0	0	0.003755	0	0
OR5D13	390142	broad.mit.edu	37	11	55541241	55541241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55541241G>A	uc010ril.1	+	1	328	c.328G>A	c.(328-330)GGA>AGA	p.G110R		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TTGCATTTTTGGAGTGACAGA	0.408													57	73					0	0	0.003610	0	0
OR5D13	390142	broad.mit.edu	37	11	55541597	55541597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55541597G>A	uc010ril.1	+	1	684	c.684G>A	c.(682-684)ATG>ATA	p.M228I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				CTACCATTATGAAGATGCGAT	0.418													37	44					0	0	0.003755	0	0
OR5D14	219436	broad.mit.edu	37	11	55563790	55563790	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55563790C>T	uc010rim.1	+	1	759	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TCACCATCTTCCATGGGACCA	0.463													17	25					0	0	0.001216	0	0
OR5D18	219438	broad.mit.edu	37	11	55587576	55587576	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55587576C>T	uc010rin.1	+	1	471	c.471C>T	c.(469-471)TCC>TCT	p.S157S		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TCTCATGTTCCTTGGAACTGA	0.468													55	56					0	0	0.003610	0	0
OR5D16	390144	broad.mit.edu	37	11	55606540	55606540	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55606540T>A	uc010rio.1	+	1	313	c.313T>A	c.(313-315)TTC>ATC	p.F105I		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				GCAATTCTTTTTCTTTTGCAC	0.423													60	94					0	0	0.003610	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735717	55735717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55735717C>T	uc010rit.1	-	1	223	c.223G>A	c.(223-225)GAC>AAC	p.D75N		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	75	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					GTCCAAATGTCCATGAGCATT	0.383													33	64					0	0	0.002445	0	0
OR5F1	338674	broad.mit.edu	37	11	55761196	55761196	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55761196C>T	uc010riv.1	-	1	906	c.906G>A	c.(904-906)GCG>GCA	p.A302A		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TAATTACATTCGCTAAAGCCT	0.383													9	19					0	0	0.004482	0	0
OR8I2	120586	broad.mit.edu	37	11	55860955	55860955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55860955C>T	uc010rix.1	+	1	172	c.172C>T	c.(172-174)CCT>TCT	p.P58S		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					GCTTCACACCCCTATGTACTT	0.378													57	98					0	0	0.003610	0	0
OR8K5	219453	broad.mit.edu	37	11	55927440	55927440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:55927440C>T	uc010rja.1	-	1	354	c.354G>A	c.(352-354)ATG>ATA	p.M118I		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				GGTCATAGGCCATGGCTGACA	0.413													33	53					0	0	0.002836	0	0
OR5T3	390154	broad.mit.edu	37	11	56020179	56020179	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:56020179C>T	uc010rjd.1	+	1	504	c.504C>T	c.(502-504)CCC>CCT	p.P168P		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	168	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					GCATGTCACCCAGAGTCTATG	0.433													48	79					0	0	0.003610	0	0
OR5M9	390162	broad.mit.edu	37	11	56230088	56230088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:56230088C>T	uc010rjj.1	-	1	790	c.790G>A	c.(790-792)GAA>AAA	p.E264K		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TCTACGGATTCCTCAGTGGGT	0.473													17	28					0	0	0.000743	0	0
OR5M1	390168	broad.mit.edu	37	11	56380594	56380594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:56380594G>A	uc001nja.1	-	1	385	c.385C>T	c.(385-387)CCT>TCT	p.P129S		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TAATGCAAAGGGCTGCAAATG	0.463													16	37					0	0	0.000958	0	0
OR9G4	283189	broad.mit.edu	37	11	56510579	56510579	+	Missense_Mutation	SNP	G	A	A	rs142738268	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:56510579G>A	uc010rjo.1	-	1	709	c.709C>T	c.(709-711)CTC>TTC	p.L237F		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ATAGCCAGGAGGATGTTGACA	0.483													28	53					0	0	0.005443	0	0
LRRC55	219527	broad.mit.edu	37	11	56949644	56949644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:56949644G>A	uc001njl.1	+	1	424	c.277G>A	c.(277-279)GAT>AAT	p.D93N		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	63	LRRNT.					integral to membrane					0						CCAGGTGGTGGATTGTAGCAG	0.627													14	13					0	0	0.003163	0	0
LRRC55	219527	broad.mit.edu	37	11	56949683	56949683	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:56949683C>T	uc001njl.1	+	1	463	c.316C>T	c.(316-318)CTG>TTG	p.L106L		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	76	LRRNT.					integral to membrane					0						GCCCCCAGACCTGCCAATGGA	0.612													10	10					0	0	0.000978	0	0
SMTNL1	219537	broad.mit.edu	37	11	57317475	57317475	+	Missense_Mutation	SNP	G	A	A	rs34201154		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:57317475G>A	uc009ymh.1	+	8	1429	c.1429G>A	c.(1429-1431)GAT>AAT	p.D477N		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	459										ovary(1)	1						GCTGGACGTGGATGACATGGT	0.547													15	28					0	0	0.002450	0	0
OR6Q1	219952	broad.mit.edu	37	11	57798955	57798955	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:57798955C>T	uc010rjz.1	+	1	531	c.531C>T	c.(529-531)GTC>GTT	p.V177V	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				GCCCAAATGTCATTGACCATT	0.517													43	79					0	0	0.003610	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947699	57947699	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:57947699T>A	uc001nmj.2	+	3	1099	c.783T>A	c.(781-783)GGT>GGA	p.G261G		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				ACTTGAGAGGTAACTCAGATC	0.517													33	44					0	0	0.002836	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958532	57958532	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:57958532G>A	uc010rka.1	+	1	570	c.570G>A	c.(568-570)GGG>GGA	p.G190G		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				TCTCCTGTGGGGACAGCTACA	0.443													23	22					0	0	0.001882	0	0
OR1S1	219959	broad.mit.edu	37	11	57982549	57982549	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:57982549C>T	uc010rkc.1	+	1	333	c.333C>T	c.(331-333)ATC>ATT	p.I111I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	111	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGAGCTGCATCACACAGATGT	0.428													43	75					0	0	0.001706	0	0
OR10Q1	219960	broad.mit.edu	37	11	57996005	57996005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:57996005C>T	uc010rkd.1	-	1	343	c.343G>A	c.(343-345)GAC>AAC	p.D115N		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				AGGAAACAGTCCGTGCTGCCG	0.557													15	25					0	0	0.004990	0	0
OR10W1	81341	broad.mit.edu	37	11	58035120	58035120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:58035120G>A	uc001nmq.1	-	1	613	c.211C>T	c.(211-213)CAT>TAT	p.H71Y		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	71	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GCCAGGATATGGGGCACCACC	0.512													26	26					0	0	0.001061	0	0
OR5B3	441608	broad.mit.edu	37	11	58170303	58170303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:58170303C>T	uc010rkf.1	-	1	580	c.580G>A	c.(580-582)GAG>AAG	p.E194K		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AGAACAAGCTCGCTAATATGT	0.363													23	23					0	0	0.003330	0	0
GLYATL1	92292	broad.mit.edu	37	11	58723328	58723328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:58723328G>A	uc001nnf.2	+	8	1113	c.737G>A	c.(736-738)CGA>CAA	p.R246Q	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.R277Q|GLYATL1_uc001nni.1_Missense_Mutation_p.R246Q|GLYATL1_uc001nnj.1_Missense_Mutation_p.R246Q			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	246						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	AACATGGCACGAGTGATGGTG	0.478													14	20					0	0	0.002450	0	0
DTX4	23220	broad.mit.edu	37	11	58949302	58949302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:58949302C>T	uc001nns.2	+	2	559	c.302C>T	c.(301-303)TCC>TTC	p.S101F	DTX4_uc001nnr.2_5'UTR	NM_015177	NP_055992	Q9Y2E6	DTX4_HUMAN	deltex 4 homolog	101	WWE 2.				Notch signaling pathway	cytoplasm	zinc ion binding			lung(2)|central_nervous_system(1)	3		all_epithelial(135;0.125)				GACAATGGCTCCTGGACGCCC	0.602													27	51					0	0	0.001786	0	0
MPEG1	219972	broad.mit.edu	37	11	58979245	58979245	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:58979245T>G	uc001nnu.3	-	1	1250	c.1094A>C	c.(1093-1095)GAT>GCT	p.D365A		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	365	Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				GGAGCCATCATCCGTGTTGGC	0.488													34	53					0	0	0.003271	0	0
OR5AN1	390195	broad.mit.edu	37	11	59132169	59132169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:59132169C>T	uc010rks.1	+	1	238	c.238C>T	c.(238-240)CCC>TCC	p.P80S		NM_001004729	NP_001004729	Q8NGI8	O5AN1_HUMAN	olfactory receptor, family 5, subfamily AN,	80	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTCCACAGTCCCCAAGATGCT	0.413													44	67					0	0	0.003610	0	0
OR4D6	219983	broad.mit.edu	37	11	59224979	59224979	+	Silent	SNP	C	T	T	rs146503258		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:59224979C>T	uc010rku.1	+	1	546	c.546C>T	c.(544-546)CTC>CTT	p.L182L		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTTATGTGCTCCAGGTGGTAA	0.512													58	56					0	0	0.003610	0	0
OR4D10	390197	broad.mit.edu	37	11	59245604	59245604	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:59245604G>A	uc001nnz.1	+	1	702	c.702G>A	c.(700-702)AGG>AGA	p.R234R		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AGGGCAGGAGGAAAGCCATCT	0.547													33	42					0	0	0.002836	0	0
OR4D10	390197	broad.mit.edu	37	11	59245693	59245693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:59245693C>T	uc001nnz.1	+	1	791	c.791C>T	c.(790-792)GCC>GTC	p.A264V		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCCTTCACTGCCCTCCCCATG	0.562													41	60					0	0	0.002852	0	0
PATL1	219988	broad.mit.edu	37	11	59425140	59425140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:59425140G>A	uc001noe.3	-	5	627	c.484C>T	c.(484-486)CCA>TCA	p.P162S	PATL1_uc009yms.1_Missense_Mutation_p.P162S|PATL1_uc010rkw.1_5'UTR	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	162	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						TCATCTTCTGGACCCTGGGGG	0.463													24	28					0	0	0.005443	0	0
MS4A4A	51338	broad.mit.edu	37	11	60059814	60059814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:60059814G>A	uc001noz.2	+	2	168	c.158G>A	c.(157-159)GGA>GAA	p.G53E	MS4A4A_uc001npa.2_Missense_Mutation_p.G34E|MS4A4A_uc001npb.2_Missense_Mutation_p.G34E|MS4A4A_uc001npc.2_Missense_Mutation_p.G34E	NM_148975	NP_683876	Q96JQ5	M4A4A_HUMAN	membrane-spanning 4-domains, subfamily A, member	53	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						CTGTGGAAAGGATTGCAAGAG	0.488													25	29					0	0	0.003954	0	0
MS4A10	341116	broad.mit.edu	37	11	60558557	60558557	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:60558557G>A	uc001npz.1	+	3	390	c.294G>A	c.(292-294)GGG>GGA	p.G98G		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	98	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						CATTCTGGGGGGCTGCCTCTG	0.582													23	30					0	0	0.001061	0	0
ZP1	22917	broad.mit.edu	37	11	60637362	60637362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:60637362G>A	uc001nqd.2	+	3	691	c.671G>A	c.(670-672)CGA>CAA	p.R224Q	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	224	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						GTGAACAAACGAGATTACATA	0.562													15	26					0	0	0.004990	0	0
ZP1	22917	broad.mit.edu	37	11	60638726	60638726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:60638726G>A	uc001nqd.2	+	6	1071	c.1051G>A	c.(1051-1053)GTG>ATG	p.V351M	ZP1_uc001nqe.2_Missense_Mutation_p.V58M	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	351	Extracellular (Potential).|ZP.				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						GAACTGGCTGGTGTCTGGCAT	0.622													8	19					0	0	0.003080	0	0
TMEM109	79073	broad.mit.edu	37	11	60689495	60689495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:60689495C>T	uc001nqg.2	+	4	968	c.590C>T	c.(589-591)GCC>GTC	p.A197V	TMEM109_uc001nqh.2_Missense_Mutation_p.A197V|TMEM132A_uc001nqi.2_5'Flank|TMEM132A_uc001nqj.2_5'Flank	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	197	Helical; (Potential).					integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						ATCCTCTACGCCCTGCTGAGC	0.677													20	21					0	0	0.002780	0	0
TMEM132A	54972	broad.mit.edu	37	11	60701033	60701033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:60701033C>T	uc001nqj.2	+	8	1569	c.1376C>T	c.(1375-1377)GCC>GTC	p.A459V	TMEM132A_uc001nqi.2_Missense_Mutation_p.A460V|TMEM132A_uc001nqk.2_Missense_Mutation_p.A472V|TMEM132A_uc001nql.1_3'UTR|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	459	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GCCTGTGATGCCGTGTTCGTG	0.617													10	19					0	0	0.001368	0	0
CYBASC3	220002	broad.mit.edu	37	11	61120466	61120466	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:61120466A>G	uc001nrf.3	-	3	715	c.539T>C	c.(538-540)TTC>TCC	p.F180S	CYBASC3_uc010rlh.1_Missense_Mutation_p.F197S|CYBASC3_uc001nrg.2_Missense_Mutation_p.F180S|CYBASC3_uc009ynn.2_RNA|CYBASC3_uc001nrh.2_Missense_Mutation_p.F180S|CYBASC3_uc001nri.2_RNA	NM_001161452	NP_001154924	Q8NBI2	CYAC3_HUMAN	cytochrome b, ascorbate dependent 3 isoform 2	180	Cytochrome b561.				electron transport chain|transport	integral to membrane|late endosome membrane|lysosomal membrane	metal ion binding|oxidoreductase activity				0						CAAACTGAAGAAAAGCTTCTC	0.507													11	17					0	0	0.000978	0	0
AHNAK	79026	broad.mit.edu	37	11	62284544	62284544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:62284544G>A	uc001ntl.2	-	5	17645	c.17345C>T	c.(17344-17346)TCA>TTA	p.S5782L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5782					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				ATCACTGAATGAATTTGAGCG	0.522													34	39					0	0	0.005524	0	0
AHNAK	79026	broad.mit.edu	37	11	62284730	62284730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:62284730G>A	uc001ntl.2	-	5	17459	c.17159C>T	c.(17158-17160)TCC>TTC	p.S5720F	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5720					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TTTAGGTTTGGAAAAATTAAA	0.493													41	58					0	0	0.003610	0	0
AHNAK	79026	broad.mit.edu	37	11	62296503	62296503	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:62296503T>A	uc001ntl.2	-	5	5686	c.5386A>T	c.(5386-5388)AAG>TAG	p.K1796*	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1796					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				ATCTCTCCCTTCAGTTTGGGT	0.473													66	90					0	0	0.003610	0	0
SLC22A8	9376	broad.mit.edu	37	11	62760970	62760970	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:62760970C>T	uc001nwo.2	-	10	1591	c.1455G>A	c.(1453-1455)GGG>GGA	p.G485G	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Silent_p.G485G|SLC22A8_uc009yom.2_Silent_p.G362G|SLC22A8_uc010rmm.1_Silent_p.G394G|SLC22A8_uc009yon.2_Silent_p.G485G	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	485	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CAGCACTGCCCCCGAGGAGGG	0.597													21	34					0	0	0.002780	0	0
SLC22A25	387601	broad.mit.edu	37	11	62931311	62931311	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:62931311C>T	uc001nwr.1	-	9	1629	c.1629G>A	c.(1627-1629)AGG>AGA	p.R543R	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	543	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						GCACAGAGCTCCTCTGAGGGG	0.498													39	45					0	0	0.002222	0	0
SLC22A25	387601	broad.mit.edu	37	11	62996862	62996862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:62996862C>T	uc001nwr.1	-	1	263	c.263G>A	c.(262-264)TGT>TAT	p.C88Y	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.C88Y	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	88	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						AAAGCGACGACACTTCTCTGG	0.542													22	29					0	0	0.001523	0	0
SLC22A10	387775	broad.mit.edu	37	11	63057907	63057907	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:63057907C>T	uc009yor.2	+	1	478	c.270C>T	c.(268-270)CGC>CGT	p.R90R	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Silent_p.R38R	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	90	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						AGTGTCGTCGCTTTGTCCATC	0.493													23	45					0	0	0.003330	0	0
SLC22A10	387775	broad.mit.edu	37	11	63065146	63065146	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:63065146A>C	uc009yor.2	+	4	985	c.777A>C	c.(775-777)CAA>CAC	p.Q259H	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	259	Cytoplasmic (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GAGACTGGCAAACCCTGCACG	0.483													29	56					0	0	0.001786	0	0
HRASLS5	117245	broad.mit.edu	37	11	63230976	63230976	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:63230976C>T	uc001nwy.2	-	6	1013	c.839G>A	c.(838-840)TGA>TAA	p.*280*	HRASLS5_uc001nwz.2_Silent_p.*270*|HRASLS5_uc010rmq.1_3'UTR|HRASLS5_uc009yos.2_RNA	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	280										ovary(1)	1						TCATCACCTTCAGGCAGTTAT	0.468													43	105					0	0	0.003610	0	0
MARK2	2011	broad.mit.edu	37	11	63671580	63671580	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:63671580T>G	uc001nxw.2	+	15	2216	c.1637T>G	c.(1636-1638)CTG>CGG	p.L546R	MARK2_uc001nxx.2_Intron|MARK2_uc001nxy.2_Intron|MARK2_uc001nxv.3_Intron|MARK2_uc001nxz.3_Missense_Mutation_p.L512R|MARK2_uc009yoy.2_Missense_Mutation_p.L466R	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	546					cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						GCCTCTGGGCTGCCCCCCACG	0.697													5	5					0	0	0.000602	0	0
MARK2	2011	broad.mit.edu	37	11	63672372	63672372	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:63672372C>T	uc001nxw.2	+	16	2370	c.1791C>T	c.(1789-1791)TTC>TTT	p.F597F	MARK2_uc001nxx.2_Silent_p.F543F|MARK2_uc001nxy.2_Silent_p.F542F|MARK2_uc001nxv.3_Silent_p.F542F|MARK2_uc001nxz.3_Silent_p.F563F|MARK2_uc009yoy.2_Silent_p.F517F	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	597					cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						GAAGCACCTTCCATGCTGGGC	0.667													18	27					0	0	0.004990	0	0
GPR137	56834	broad.mit.edu	37	11	64056676	64056676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:64056676C>T	uc001nzg.1	+	8	1401	c.1093C>T	c.(1093-1095)CCC>TCC	p.P365S	GPR137_uc010rni.1_Missense_Mutation_p.P423S|GPR137_uc001nzf.2_3'UTR|GPR137_uc001nzi.2_3'UTR|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	365	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						TGATCCCCCTCCCTCCCCCAC	0.647													19	18					0	0	0.001216	0	0
CCDC88B	283234	broad.mit.edu	37	11	64119691	64119691	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:64119691C>T	uc001nzy.2	+	19	3233	c.3189C>T	c.(3187-3189)TCC>TCT	p.S1063S	CCDC88B_uc009ypo.1_Silent_p.S1060S|CCDC88B_uc001oaa.2_Silent_p.S215S|CCDC88B_uc001oab.1_5'Flank|CCDC88B_uc001oac.2_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1063	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						CACGGCAGTCCCAGGAGGAGA	0.692													4	6					0	0	0.000248	0	0
RASGRP2	10235	broad.mit.edu	37	11	64508499	64508499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:64508499C>T	uc009ypu.2	-	5	519	c.292G>A	c.(292-294)GAG>AAG	p.E98K	RASGRP2_uc001oat.2_5'Flank|RASGRP2_uc001oau.2_5'UTR|RASGRP2_uc009ypv.2_Missense_Mutation_p.E98K|RASGRP2_uc009ypw.2_Missense_Mutation_p.E98K	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	98	N-terminal Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						TTGATCTGCTCAGCCAACTCC	0.597											OREG0004006	type=REGULATORY REGION|Gene=RASGRP2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	7	7					0	0	0.001984	0	0
PYGM	5837	broad.mit.edu	37	11	64518027	64518027	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:64518027C>T	uc001oax.3	-	17	2815	c.1998G>A	c.(1996-1998)CAG>CAA	p.Q666Q	PYGM_uc001oay.3_Silent_p.Q578Q	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	666			Q -> E (in GSD5).		glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	CAGTGGAGATCTGCTCAGAGA	0.592													16	27					0	0	0.004007	0	0
ATG2A	23130	broad.mit.edu	37	11	64662858	64662858	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:64662858G>A	uc001obx.2	-	40	5599	c.5484C>T	c.(5482-5484)TCC>TCT	p.S1828S	uc009ypx.2_5'Flank|ATG2A_uc001obw.2_Silent_p.S593S	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1828							protein binding			ovary(1)|central_nervous_system(1)	2						TATCCTGCAGGGAGCGGGAGA	0.682													13	12					0	0	0.001855	0	0
ATG2A	23130	broad.mit.edu	37	11	64678737	64678737	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:64678737G>A	uc001obx.2	-	10	1354	c.1239C>T	c.(1237-1239)GCC>GCT	p.A413A		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	413							protein binding			ovary(1)|central_nervous_system(1)	2						GGGGGTTGGGGGCCATCTTGC	0.627													23	31					0	0	0.005443	0	0
SYVN1	84447	broad.mit.edu	37	11	64899811	64899811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:64899811G>A	uc001odb.2	-	6	533	c.439C>T	c.(439-441)CTC>TTC	p.L147F	SYVN1_uc001odc.2_Missense_Mutation_p.L147F|SYVN1_uc009yqc.2_Intron	NM_172230	NP_757385	Q86TM6	SYVN1_HUMAN	synoviolin 1 isoform b	147	Helical; (Potential).				ER-associated protein catabolic process|response to stress	endoplasmic reticulum membrane|integral to membrane|nucleus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(1)	1						ATGCCCAGGAGGAACATAAGA	0.597													14	24					0	0	0.002450	0	0
SYVN1	84447	broad.mit.edu	37	11	64900474	64900474	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:64900474G>A	uc001odb.2	-	4	391	c.297C>T	c.(295-297)TTC>TTT	p.F99F	SYVN1_uc001odc.2_Silent_p.F99F|SYVN1_uc009yqc.2_Silent_p.F99F	NM_172230	NP_757385	Q86TM6	SYVN1_HUMAN	synoviolin 1 isoform b	99	Helical; (Potential).				ER-associated protein catabolic process|response to stress	endoplasmic reticulum membrane|integral to membrane|nucleus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(1)	1						AGCGGGGGCTGAAGTCATCCC	0.542													7	22					0	0	0.001984	0	0
TIGD3	220359	broad.mit.edu	37	11	65124164	65124164	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:65124164C>T	uc001odo.3	+	2	1048	c.885C>T	c.(883-885)CCC>CCT	p.P295P		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	295	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						CCACGCCTCCCCTGCCCAGCT	0.652													19	33					0	0	0.002299	0	0
LTBP3	4054	broad.mit.edu	37	11	65321212	65321212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:65321212G>A	uc001oej.2	-	3	1093	c.824C>T	c.(823-825)CCC>CTC	p.P275L	LTBP3_uc010roi.1_Missense_Mutation_p.P158L|LTBP3_uc001oei.2_Missense_Mutation_p.P275L|LTBP3_uc010roj.1_Intron|LTBP3_uc010rok.1_Missense_Mutation_p.P186L	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	275						extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						GCGGCCCAGGGGCTTCTGGGT	0.667													4	3					0	0	0.000602	0	0
NPAS4	266743	broad.mit.edu	37	11	66190194	66190194	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:66190194G>A	uc001ohx.1	+	4	656	c.480G>A	c.(478-480)CAG>CAA	p.Q160Q	NPAS4_uc010rpc.1_5'UTR	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	160					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TCAGGCGCCAGAGTGCAGGCA	0.547													24	27					0	0	0.003954	0	0
ZDHHC24	254359	broad.mit.edu	37	11	66311202	66311202	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:66311202G>A	uc001oin.1	-	2	729	c.532C>T	c.(532-534)CTG>TTG	p.L178L	ACTN3_uc010rpi.1_5'Flank|ZDHHC24_uc001oim.1_RNA|ZDHHC24_uc009yrg.1_Silent_p.L178L	NM_207340	NP_997223	Q6UX98	ZDH24_HUMAN	zinc finger, DHHC-type containing 24	178	Leu-rich.|Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding				0						CAGGGAAGCAGGAGGAGGGCA	0.677											OREG0021110	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	2					0	0	0.000602	0	0
CCDC87	55231	broad.mit.edu	37	11	66358741	66358741	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:66358741G>A	uc001oiq.3	-	1	1814	c.1746C>T	c.(1744-1746)GCC>GCT	p.A582A	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	582										ovary(1)|skin(1)	2						TCATCAAGGAGGCCTTGTTTG	0.453													32	58					0	0	0.003271	0	0
RHOD	29984	broad.mit.edu	37	11	66834276	66834276	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:66834276C>T	uc001ojv.2	+	3	373	c.288C>T	c.(286-288)TTC>TTT	p.F96F		NM_014578	NP_055393	O00212	RHOD_HUMAN	ras homolog D precursor	96					regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity				0						TGCTTTGCTTCGATGTCACCA	0.607													32	47					0	0	0.003755	0	0
RAD9A	5883	broad.mit.edu	37	11	67164708	67164708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:67164708G>A	uc001okr.2	+	10	1024	c.931G>A	c.(931-933)GAA>AAA	p.E311K	RAD9A_uc001oks.2_Missense_Mutation_p.E168K	NM_004584	NP_004575	Q99638	RAD9A_HUMAN	RAD9 homolog	311	Sufficient for interaction with ABL1.				DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint	nucleoplasm	3'-5' exonuclease activity|exodeoxyribonuclease III activity|histone deacetylase binding|protein kinase binding|SH3 domain binding				0			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			GATCGCCATGGAAACCACTAT	0.612								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					7	21					0	0	0.003080	0	0
GPR152	390212	broad.mit.edu	37	11	67220040	67220040	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:67220040C>T	uc001olm.2	-	1	161	c.156G>A	c.(154-156)TGG>TGA	p.W52*	uc009yrw.1_RNA|CABP4_uc001oln.2_5'UTR|CABP4_uc001olo.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	52	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			AGCCGGCCAGCCACGCCATCA	0.662													5	7					0	0	0.000602	0	0
CABP2	51475	broad.mit.edu	37	11	67288549	67288549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:67288549G>A	uc001omc.1	-	4	428	c.326C>T	c.(325-327)ACC>ATC	p.T109I	CABP2_uc001omd.1_Missense_Mutation_p.T52I|CABP2_uc001ome.1_Missense_Mutation_p.T115I	NM_016366	NP_057450	Q9NPB3	CABP2_HUMAN	calcium binding protein 2 isoform 1	109	EF-hand 1.				signal transduction	Golgi apparatus|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1						GTAGCCCAGGGTCCGCATGCA	0.632													27	43					0	0	0.001271	0	0
SAPS3	55291	broad.mit.edu	37	11	68312445	68312445	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:68312445T>A	uc001onw.2	+	4	634	c.367T>A	c.(367-369)TTC>ATC	p.F123I	SAPS3_uc010rqb.1_Missense_Mutation_p.F32I|SAPS3_uc001onv.2_Missense_Mutation_p.F123I|SAPS3_uc001ony.3_Missense_Mutation_p.F123I|SAPS3_uc001onx.2_Missense_Mutation_p.F123I|SAPS3_uc009ysh.2_Missense_Mutation_p.F123I|SAPS3_uc001onu.2_Missense_Mutation_p.F123I|SAPS3_uc010rqc.1_Missense_Mutation_p.F32I	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	123					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			ACTTGCCAGTTTCTTCAGCAA	0.398													22	40					0	0	0.003330	0	0
SHANK2	22941	broad.mit.edu	37	11	70331836	70331836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:70331836G>A	uc001oqc.2	-	21	4640	c.4562C>T	c.(4561-4563)TCC>TTC	p.S1521F	SHANK2_uc010rqn.1_Missense_Mutation_p.S933F|SHANK2_uc001opz.2_Missense_Mutation_p.S926F|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1142					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TCCACCTTCGGAAGACAGGGT	0.552													27	28					0	0	0.001061	0	0
ARAP1	116985	broad.mit.edu	37	11	72408231	72408231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:72408231G>A	uc001osu.2	-	22	3152	c.2963C>T	c.(2962-2964)TCC>TTC	p.S988F	ARAP1_uc001osv.2_Missense_Mutation_p.S988F|ARAP1_uc001osr.2_Missense_Mutation_p.S748F|ARAP1_uc001oss.2_Missense_Mutation_p.S743F|ARAP1_uc009yth.2_Missense_Mutation_p.S682F|ARAP1_uc010rre.1_Missense_Mutation_p.S743F	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	988	Rho-GAP.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						GATGCCCTCGGAGGTCAGGCC	0.701													50	79					0	0	0.003610	0	0
UCP3	7352	broad.mit.edu	37	11	73714897	73714897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:73714897C>T	uc001our.2	-	6	1154	c.799G>A	c.(799-801)GAG>AAG	p.E267K	UCP3_uc001ous.2_Missense_Mutation_p.E267K	NM_003356	NP_003347	P55916	UCP3_HUMAN	uncoupling protein 3 isoform UCP3L	267	Solcar 3.				mitochondrial transport|respiratory electron transport chain|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	binding			pancreas(1)	1	Breast(11;2.08e-05)					GTGGGGCCCTCCTGGGCCACC	0.597													58	64					0	0	0.003610	0	0
UCP3	7352	broad.mit.edu	37	11	73716890	73716890	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:73716890G>A	uc001our.2	-	4	781	c.426C>T	c.(424-426)GTC>GTT	p.V142V	UCP3_uc001ous.2_Silent_p.V142V	NM_003356	NP_003347	P55916	UCP3_HUMAN	uncoupling protein 3 isoform UCP3L	142	Solcar 2.				mitochondrial transport|respiratory electron transport chain|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	binding			pancreas(1)	1	Breast(11;2.08e-05)					CCTGAAATCGGACCTTCACCA	0.607													10	27					0	0	0.000673	0	0
CHRDL2	25884	broad.mit.edu	37	11	74415687	74415687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:74415687C>T	uc001ovi.2	-	7	848	c.595G>A	c.(595-597)GAT>AAT	p.D199N	CHRDL2_uc001ovg.2_Missense_Mutation_p.D83N|CHRDL2_uc001ovh.2_Missense_Mutation_p.D199N|CHRDL2_uc001ovj.1_RNA|CHRDL2_uc001ovk.1_Missense_Mutation_p.D199N			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	199					cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					GAACATGGATCCTGAGGATGT	0.597													13	10					0	0	0.001855	0	0
CHRDL2	25884	broad.mit.edu	37	11	74429817	74429817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:74429817G>A	uc001ovi.2	-	2	396	c.143C>T	c.(142-144)CCC>CTC	p.P48L	CHRDL2_uc001ovg.2_5'UTR|CHRDL2_uc001ovh.2_Missense_Mutation_p.P48L|CHRDL2_uc001ovk.1_Missense_Mutation_p.P48L			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	48	VWFC 1.				cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					CTCCAAGTAGGGGTGCCAGCT	0.587													5	14					0	0	0.000602	0	0
OR2AT4	341152	broad.mit.edu	37	11	74800530	74800530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:74800530G>A	uc010rro.1	-	1	229	c.229C>T	c.(229-231)CTT>TTT	p.L77F		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTGGTGAAAAGGATGTCCAAG	0.527													29	23					0	0	0.001061	0	0
SERPINH1	871	broad.mit.edu	37	11	75279855	75279855	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:75279855C>T	uc001owr.2	+	3	931	c.702C>T	c.(700-702)GTC>GTT	p.V234V	SERPINH1_uc009yuf.2_Silent_p.V234V|SERPINH1_uc009yug.2_Silent_p.V234V|SERPINH1_uc001ows.2_Silent_p.V234V|SERPINH1_uc001owt.2_Silent_p.V17V	NM_001235	NP_001226	P50454	SERPH_HUMAN	serine (or cysteine) proteinase inhibitor, clade	234					regulation of proteolysis|response to unfolded protein	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	collagen binding|serine-type endopeptidase inhibitor activity			ovary(2)	2	Ovarian(111;0.11)					CCGTGGGTGTCATGATGATGC	0.567													18	22					0	0	0.001216	0	0
C11orf30	56946	broad.mit.edu	37	11	76207326	76207326	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:76207326C>T	uc001oxl.2	+	9	1319	c.1176C>T	c.(1174-1176)GCC>GCT	p.A392A	C11orf30_uc009yuj.1_Silent_p.A407A|C11orf30_uc010rsa.1_Silent_p.A342A|C11orf30_uc001oxm.2_Intron|C11orf30_uc010rsb.1_Silent_p.A407A|C11orf30_uc010rsc.1_Silent_p.A407A|C11orf30_uc001oxn.2_Silent_p.A393A|C11orf30_uc010rsd.1_Silent_p.A406A	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	392	Interaction with BRCA2.				chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						TAGTGAGTGCCCCAACTCAGA	0.448													31	31					0	0	0.001512	0	0
LRRC32	2615	broad.mit.edu	37	11	76371022	76371022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:76371022C>T	uc001oxq.3	-	3	1858	c.1615G>A	c.(1615-1617)GAG>AAG	p.E539K	LRRC32_uc001oxr.3_Missense_Mutation_p.E539K|LRRC32_uc010rsf.1_Missense_Mutation_p.E525K	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	539	LRR 20.|Extracellular (Potential).					integral to plasma membrane					0						TCCAGCACCTCCAGTGACACA	0.642													13	21					0	0	0.001368	0	0
GDPD4	220032	broad.mit.edu	37	11	76980047	76980047	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:76980047C>T	uc001oyf.2	-	8	797	c.546G>A	c.(544-546)GGG>GGA	p.G182G		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	182	Helical; (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						GAGAATAAATCCCCAGTGGCA	0.463													34	36					0	0	0.002096	0	0
KCTD14	65987	broad.mit.edu	37	11	77734242	77734242	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:77734242G>A	uc001oyw.3	-	1	79	c.54C>T	c.(52-54)ACC>ACT	p.T18T		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	18						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			GGGGCAGAGGGGTCTGGCTCG	0.592													19	23					0	0	0.002780	0	0
ALG8	79053	broad.mit.edu	37	11	77823783	77823783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:77823783G>A	uc001oza.1	-	8	876	c.811C>T	c.(811-813)CCT>TCT	p.P271S	ALG8_uc001oyz.1_Missense_Mutation_p.P271S|ALG8_uc009yux.1_Missense_Mutation_p.P169S	NM_024079	NP_076984	Q9BVK2	ALG8_HUMAN	dolichyl pyrophosphate Glc1Man9GlcNAc2	271					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	alpha-1,3-mannosyltransferase activity|dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|pancreas(1)	3	all_cancers(14;3.62e-19)|all_epithelial(13;1.27e-21)|Breast(9;8.51e-17)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;9.66e-25)			CTCTTGAAAGGAAAGAGTCGG	0.413													16	27					0	0	0.000743	0	0
ODZ4	26011	broad.mit.edu	37	11	78443566	78443566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:78443566G>A	uc001ozl.3	-	21	3396	c.2933C>T	c.(2932-2934)CCT>CTT	p.P978L		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	978	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TGTGATGAAAGGTGCCCGCTC	0.542													12	12					0	0	0.001855	0	0
DLG2	1740	broad.mit.edu	37	11	83497758	83497758	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:83497758C>T	uc001paj.2	-	13	1788	c.1485G>A	c.(1483-1485)ACG>ACA	p.T495T	DLG2_uc001pai.2_Silent_p.T392T|DLG2_uc010rsy.1_Silent_p.T462T|DLG2_uc010rsz.1_Silent_p.T495T|DLG2_uc010rta.1_Silent_p.T495T|DLG2_uc001pak.2_Silent_p.T600T|DLG2_uc010rtb.1_Silent_p.T462T|DLG2_uc001pal.1_Silent_p.T495T|DLG2_uc001pam.1_Silent_p.T534T	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	495	PDZ 3.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				GTGCTATAATCGTCACTGTCT	0.453													12	37					0	0	0.001368	0	0
DLG2	1740	broad.mit.edu	37	11	83585526	83585526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:83585526G>A	uc001paj.2	-	11	1490	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F	DLG2_uc001pai.2_Missense_Mutation_p.S293F|DLG2_uc010rsy.1_Missense_Mutation_p.S363F|DLG2_uc010rsz.1_Missense_Mutation_p.S396F|DLG2_uc010rta.1_Missense_Mutation_p.S396F|DLG2_uc001pak.2_Missense_Mutation_p.S501F|DLG2_uc010rtb.1_Missense_Mutation_p.S363F|DLG2_uc001pal.1_Missense_Mutation_p.S396F|DLG2_uc001pam.1_Missense_Mutation_p.S435F	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	396						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				GCTATGTTGGGAATGACTGCA	0.318													10	24					0	0	0.000673	0	0
CCDC83	220047	broad.mit.edu	37	11	85593607	85593607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:85593607G>A	uc001pbh.1	+	4	744	c.232G>A	c.(232-234)GAA>AAA	p.E78K	CCDC83_uc001pbg.1_Missense_Mutation_p.E78K|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.E35K	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	78	Potential.									skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				TCTACTAAAGGAACTGAGTGA	0.393													27	48					0	0	0.001061	0	0
CCDC81	60494	broad.mit.edu	37	11	86123497	86123497	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:86123497C>T	uc001pbx.1	+	11	1715	c.1287C>T	c.(1285-1287)TCC>TCT	p.S429S	CCDC81_uc001pbw.1_Silent_p.S339S|CCDC81_uc010rtq.1_Silent_p.S212S|CCDC81_uc001pby.1_Silent_p.S164S	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	429										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				AGGAATATTCCCGGAGTCTCC	0.418													27	49					0	0	0.001786	0	0
ME3	10873	broad.mit.edu	37	11	86157481	86157481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:86157481C>T	uc001pbz.2	-	12	1683	c.1429G>A	c.(1429-1431)GAA>AAA	p.E477K	ME3_uc001pca.2_Missense_Mutation_p.E477K|ME3_uc009yvk.2_Missense_Mutation_p.E477K	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	477					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	TTGCCATCTTCCAGAGTCACA	0.542													20	21					0	0	0.001882	0	0
FZD4	8322	broad.mit.edu	37	11	86665987	86665987	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:86665987G>A	uc001pce.2	-	1	447	c.141C>T	c.(139-141)CCC>CCT	p.P47P	uc001pcf.2_5'Flank	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	47	FZ.|Extracellular (Potential).				canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AGATGCGGATGGGGTCGCAGC	0.627													12	22					0	0	0.001855	0	0
NOX4	50507	broad.mit.edu	37	11	89135619	89135619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:89135619C>T	uc001pct.2	-	9	960	c.721G>A	c.(721-723)GAG>AAG	p.E241K	NOX4_uc009yvr.2_Missense_Mutation_p.E216K|NOX4_uc001pcu.2_Missense_Mutation_p.E167K|NOX4_uc001pcw.2_Intron|NOX4_uc001pcx.2_Intron|NOX4_uc001pcv.2_Missense_Mutation_p.E241K|NOX4_uc009yvo.2_Intron|NOX4_uc010rtu.1_Missense_Mutation_p.E75K|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Missense_Mutation_p.E217K|NOX4_uc009yvq.2_Missense_Mutation_p.E217K|NOX4_uc009yvs.1_RNA	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	241	Extracellular (Potential).|Ferric oxidoreductase.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				GAGAAATACTCTGGTAAGGAA	0.413													60	92					0	0	0.003610	0	0
NOX4	50507	broad.mit.edu	37	11	89166022	89166022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:89166022G>A	uc001pct.2	-	7	717	c.478C>T	c.(478-480)CCT>TCT	p.P160S	NOX4_uc009yvr.2_Missense_Mutation_p.P135S|NOX4_uc001pcu.2_Missense_Mutation_p.P86S|NOX4_uc001pcw.2_Intron|NOX4_uc001pcx.2_Intron|NOX4_uc001pcv.2_Missense_Mutation_p.P160S|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_5'UTR|NOX4_uc009yvp.2_Missense_Mutation_p.P160S|NOX4_uc010rtv.1_Missense_Mutation_p.P136S|NOX4_uc009yvq.2_Missense_Mutation_p.P136S|NOX4_uc009yvs.1_RNA	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	160	Ferric oxidoreductase.|Helical; (Potential).				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				GTCAGGCCAGGAACTATAAAA	0.348													7	19					0	0	0.003080	0	0
FOLH1B	219595	broad.mit.edu	37	11	89403637	89403637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:89403637G>A	uc001pda.2	+	4	701	c.175G>A	c.(175-177)GAA>AAA	p.E59K		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	59					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGGAGCAGTGGAACCAGGTAA	0.229													31	52					0	0	0.001786	0	0
NAALAD2	10003	broad.mit.edu	37	11	89891358	89891358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:89891358G>A	uc001pdf.3	+	7	951	c.842G>A	c.(841-843)CGA>CAA	p.R281Q	NAALAD2_uc009yvx.2_Missense_Mutation_p.R281Q|NAALAD2_uc009yvy.2_Intron|NAALAD2_uc001pdd.2_Missense_Mutation_p.R281Q|NAALAD2_uc001pde.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	281	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				GGAATCCCCCGAATACCTGTA	0.284													57	93					0	0	0.003610	0	0
MIR1261	100302228	broad.mit.edu	37	11	90602344	90602344	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:90602344C>T	hsa-mir-1261|MI0006396	-			c.27C>T																				0						cacaatatccccataagccaa	0													14	15					0	0	0.004007	0	0
FAT3	120114	broad.mit.edu	37	11	92085336	92085336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:92085336C>T	uc001pdj.3	+	1	75	c.58C>T	c.(58-60)CTC>TTC	p.L20F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	20					homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTGCCTCATCCTCCTGCTTTT	0.507										TCGA Ovarian(4;0.039)			189	287					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92086077	92086077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:92086077C>T	uc001pdj.3	+	1	816	c.799C>T	c.(799-801)CAT>TAT	p.H267Y		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	267	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCCAACAATCCATGTAGTCAC	0.443										TCGA Ovarian(4;0.039)			171	287					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92086695	92086695	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:92086695C>T	uc001pdj.3	+	1	1434	c.1417C>T	c.(1417-1419)CAG>TAG	p.Q473*		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	473	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCCAGAATTTCAGCAACCACT	0.423										TCGA Ovarian(4;0.039)			134	213					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92523162	92523162	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:92523162G>A	uc001pdj.3	+	7	4406	c.4389G>A	c.(4387-4389)CCG>CCA	p.P1463P		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1463	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTCTCAGCCGAATTACGATG	0.413										TCGA Ovarian(4;0.039)			125	223					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92534972	92534972	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:92534972G>A	uc001pdj.3	+	9	8810	c.8793G>A	c.(8791-8793)GGG>GGA	p.G2931G		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2931	Cadherin 27.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGTACCGAGGGAATGTGAAGG	0.537										TCGA Ovarian(4;0.039)			146	257					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92565151	92565151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:92565151G>A	uc001pdj.3	+	13	9862	c.9845G>A	c.(9844-9846)GGG>GAG	p.G3282E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3282	Cadherin 30.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AACGAACAAGGGAAATTTAAG	0.388										TCGA Ovarian(4;0.039)			26	54					0	0	0.005443	0	0
PANX1	24145	broad.mit.edu	37	11	93911662	93911662	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:93911662A>T	uc001per.2	+	3	834	c.449A>T	c.(448-450)TAC>TTC	p.Y150F	PANX1_uc001peq.2_Missense_Mutation_p.Y150F	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	150	Cytoplasmic (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GACAAAGTTTACAACCGTGCA	0.498													31	36					0	0	0.001512	0	0
GPR83	10888	broad.mit.edu	37	11	94113903	94113903	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:94113903G>A	uc001pet.2	-	4	856	c.684C>T	c.(682-684)TTC>TTT	p.F228F		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	228	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CTGGCTCAGGGAAGTCTGGCA	0.572													17	26					0	0	0.001523	0	0
MRE11A	4361	broad.mit.edu	37	11	94163119	94163119	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:94163119G>A	uc001peu.2	-	19	2217	c.2028C>T	c.(2026-2028)TCC>TCT	p.S676S	MRE11A_uc001pev.2_Silent_p.S648S|MRE11A_uc009ywj.2_Silent_p.S679S	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	676					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				CTTGACTCTGGGACATGATTT	0.274								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				15	23					0	0	0.004990	0	0
CWC15	51503	broad.mit.edu	37	11	94696570	94696570	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:94696570T>A	uc001pfd.3	-	8	793	c.670A>T	c.(670-672)ATG>TTG	p.M224L		NM_016403	NP_057487	Q9P013	CWC15_HUMAN	CWC15 homolog	224					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome	protein binding|RNA binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TATTTCTCCATGAACTTTTTG	0.299													8	14					0	0	0.000443	0	0
MTMR2	8898	broad.mit.edu	37	11	95590751	95590751	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:95590751T>C	uc001pfu.2	-	7	872	c.619A>G	c.(619-621)AAG>GAG	p.K207E	MTMR2_uc001pfv.2_Missense_Mutation_p.K135E|MTMR2_uc001pfs.2_Missense_Mutation_p.K135E|MTMR2_uc001pft.2_Missense_Mutation_p.K135E|MTMR2_uc010ruj.1_Missense_Mutation_p.K190E	NM_016156	NP_057240	Q13614	MTMR2_HUMAN	myotubularin-related protein 2 isoform 1	207	Myotubularin phosphatase.					nucleus	inositol or phosphatidylinositol phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TCATATAGCTTCCACCCATTT	0.318													5	61					0	0	0.000602	0	0
CNTN5	53942	broad.mit.edu	37	11	99690344	99690344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:99690344C>T	uc001pga.2	+	4	464	c.125C>T	c.(124-126)TCT>TTT	p.S42F	CNTN5_uc009ywv.1_Missense_Mutation_p.S42F|CNTN5_uc001pfz.2_Missense_Mutation_p.S42F|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	42					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AAGAGTTCATCTTCATCTCTC	0.403													19	94					0	0	0.001216	0	0
CNTN5	53942	broad.mit.edu	37	11	100061891	100061891	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:100061891C>T	uc001pga.2	+	14	1953	c.1614C>T	c.(1612-1614)ATC>ATT	p.I538I	CNTN5_uc009ywv.1_Silent_p.I538I|CNTN5_uc001pfz.2_Silent_p.I538I|CNTN5_uc001pgb.2_Silent_p.I464I|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	538	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GTCTACGGATCCTAAATGCTT	0.368													22	31					0	0	0.002780	0	0
CNTN5	53942	broad.mit.edu	37	11	100064243	100064243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:100064243C>T	uc001pga.2	+	15	2071	c.1732C>T	c.(1732-1734)CCT>TCT	p.P578S	CNTN5_uc009ywv.1_Missense_Mutation_p.P578S|CNTN5_uc001pfz.2_Missense_Mutation_p.P578S|CNTN5_uc001pgb.2_Missense_Mutation_p.P504S|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	578	Ig-like C2-type 6.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AGAACTTACTCCTAAAAGAAC	0.328													9	13					0	0	0.000443	0	0
CNTN5	53942	broad.mit.edu	37	11	100126511	100126511	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:100126511G>A	uc001pga.2	+	17	2364	c.2025G>A	c.(2023-2025)GGG>GGA	p.G675G	CNTN5_uc001pfz.2_Silent_p.G675G|CNTN5_uc001pgb.2_Silent_p.G601G|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	675	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GCCCACCTGGGATAGTAATTG	0.458													28	41					0	0	0.002836	0	0
CNTN5	53942	broad.mit.edu	37	11	100170010	100170010	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:100170010C>T	uc001pga.2	+	20	2841	c.2502C>T	c.(2500-2502)TTC>TTT	p.F834F	CNTN5_uc001pfz.2_Silent_p.F834F|CNTN5_uc001pgb.2_Silent_p.F760F|CNTN5_uc010ruk.1_Silent_p.F105F	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	834	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTTCCAAATTCATTTATCGAG	0.428													29	43					0	0	0.001512	0	0
CNTN5	53942	broad.mit.edu	37	11	100170081	100170081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:100170081G>A	uc001pga.2	+	20	2912	c.2573G>A	c.(2572-2574)GGA>GAA	p.G858E	CNTN5_uc001pfz.2_Missense_Mutation_p.G858E|CNTN5_uc001pgb.2_Missense_Mutation_p.G784E|CNTN5_uc010ruk.1_Missense_Mutation_p.G129E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	858	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AACAATAAAGGAGATGGGCCT	0.348													35	52					0	0	0.001951	0	0
PGR	5241	broad.mit.edu	37	11	100999088	100999088	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:100999088C>T	uc001pgh.2	-	1	1457	c.714G>A	c.(712-714)AAG>AAA	p.K238K	PGR_uc001pgi.2_Silent_p.K238K|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	238	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	GAGGTTTGCCCTTCAGAAGCG	0.726													6	12					0	0	0.001984	0	0
C11orf70	85016	broad.mit.edu	37	11	101951950	101951950	+	Nonsense_Mutation	SNP	C	T	T	rs140641107		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:101951950C>T	uc001pgp.2	+	6	641	c.613C>T	c.(613-615)CGA>TGA	p.R205*	C11orf70_uc001pgq.2_Nonsense_Mutation_p.R167*	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	205										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		TTTTAGTGTTCGAAAGAATCC	0.299													19	51					0	0	0.001216	0	0
MMP20	9313	broad.mit.edu	37	11	102479721	102479721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:102479721G>A	uc001phc.2	-	5	771	c.758C>T	c.(757-759)CCC>CTC	p.P253L		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	253					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		GAATCCATAGGGATTCTTGTA	0.468													32	52					0	0	0.002836	0	0
MMP3	4314	broad.mit.edu	37	11	102713201	102713201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:102713201C>T	uc001phj.1	-	3	525	c.460G>A	c.(460-462)GAA>AAA	p.E154K		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	154					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	GCCTCTCCTTCATACAGCCTG	0.323													37	57					0	0	0.002222	0	0
MMP13	4322	broad.mit.edu	37	11	102826022	102826022	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:102826022G>A	uc001phl.2	-	2	349	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	107					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GAGTTCGAGGGAAAACATTGT	0.378													36	33					0	0	0.005524	0	0
GRIA4	2893	broad.mit.edu	37	11	105775926	105775926	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:105775926C>T	uc001pix.2	+	9	1503	c.1057C>T	c.(1057-1059)CGA>TGA	p.R353*	GRIA4_uc001piu.1_Nonsense_Mutation_p.R353*|GRIA4_uc001piw.2_Nonsense_Mutation_p.R353*|GRIA4_uc009yxk.1_Nonsense_Mutation_p.R353*	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	353	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	CACTTAGGTTCGAATTCAAGG	0.378													26	50					0	0	0.001271	0	0
AASDHPPT	60496	broad.mit.edu	37	11	105967543	105967543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:105967543C>T	uc001pjc.1	+	6	985	c.839C>T	c.(838-840)TCT>TTT	p.S280F	AASDHPPT_uc010rvn.1_RNA|AASDHPPT_uc001pjd.1_Missense_Mutation_p.S133F	NM_015423	NP_056238	Q9NRN7	ADPPT_HUMAN	aminoadipate-semialdehyde	280					macromolecule biosynthetic process|pantothenate metabolic process	cytosol	holo-[acyl-carrier-protein] synthase activity|magnesium ion binding|protein binding				0		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.78e-05)|Epithelial(105;0.00622)|all cancers(92;0.041)		TTAATGTCATCTGCCGTTCCC	0.378													28	39					0	0	0.001061	0	0
ELMOD1	55531	broad.mit.edu	37	11	107518311	107518311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:107518311G>A	uc010rvs.1	+	7	942	c.538G>A	c.(538-540)GGA>AGA	p.G180R	ELMOD1_uc001pjm.2_Missense_Mutation_p.G180R|ELMOD1_uc010rvt.1_Missense_Mutation_p.G174R	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	180	ELMO.				phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		GGGACTTCTGGGACTGTACAA	0.413													18	17					0	0	0.002299	0	0
RAB39	54734	broad.mit.edu	37	11	107832799	107832799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:107832799C>T	uc001pjt.2	+	2	373	c.355C>T	c.(355-357)CGG>TGG	p.R119W		NM_017516	NP_059986	Q14964	RB39A_HUMAN	RAB39, member RAS oncogene family	119					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0				BRCA - Breast invasive adenocarcinoma(274;3.04e-05)|Epithelial(105;8.56e-05)|all cancers(92;0.00179)		ACAGCCATTTCGGATTGTATT	0.378													23	28					0	0	0.001882	0	0
CUL5	8065	broad.mit.edu	37	11	107917082	107917082	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:107917082A>G	uc001pjv.2	+	3	887	c.220A>G	c.(220-222)AAG>GAG	p.K74E	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	74					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		TGAGTTTATTAAGCAAGCACA	0.318													17	31					0	0	0.000958	0	0
NPAT	4863	broad.mit.edu	37	11	108043009	108043009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:108043009G>A	uc001pjz.3	-	13	2804	c.2702C>T	c.(2701-2703)CCT>CTT	p.P901L	NPAT_uc010rvv.1_5'Flank|NPAT_uc001pka.2_Missense_Mutation_p.P696L	NM_002519	NP_002510	Q14207	NPAT_HUMAN	nuclear protein,  ataxia-telangiectasia locus	901					positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	protein C-terminus binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			ovary(2)	2		all_cancers(61;2.31e-10)|all_epithelial(67;1.11e-06)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;1.05e-05)|Epithelial(105;3.01e-05)|all cancers(92;0.000816)|Colorectal(284;0.116)		AGGTGGTAGAGGTTGAGCAGT	0.428													40	88					0	0	0.001485	0	0
ATM	472	broad.mit.edu	37	11	108164093	108164093	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:108164093C>T	uc001pkb.1	+	31	5050	c.4665C>T	c.(4663-4665)CTC>CTT	p.L1555L	ATM_uc009yxr.1_Silent_p.L1555L|ATM_uc001pke.1_Silent_p.L207L|ATM_uc001pkf.2_Intron	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	1555					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		ATGAAAACCTCTATATCACGA	0.274			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			27	39					0	0	0.003954	0	0
EXPH5	23086	broad.mit.edu	37	11	108383883	108383883	+	Missense_Mutation	SNP	G	T	T	rs115994428	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:108383883G>T	uc001pkk.2	-	6	2462	c.2351C>A	c.(2350-2352)CCG>CAG	p.P784Q	EXPH5_uc010rvy.1_Missense_Mutation_p.P596Q|EXPH5_uc010rvz.1_Missense_Mutation_p.P628Q|EXPH5_uc010rwa.1_Missense_Mutation_p.P708Q	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	784					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		ATCTGTGTGCGGTATATACAT	0.383													6	139					0.00116845	0.00200884	0.001168	1	0
EXPH5	23086	broad.mit.edu	37	11	108384262	108384262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:108384262G>A	uc001pkk.2	-	6	2083	c.1972C>T	c.(1972-1974)CCA>TCA	p.P658S	EXPH5_uc010rvy.1_Missense_Mutation_p.P470S|EXPH5_uc010rvz.1_Missense_Mutation_p.P502S|EXPH5_uc010rwa.1_Missense_Mutation_p.P582S	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	658					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GGCTTATTTGGAAAAATTTTC	0.448													28	42					0	0	0.001512	0	0
EXPH5	23086	broad.mit.edu	37	11	108384777	108384777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:108384777C>T	uc001pkk.2	-	6	1568	c.1457G>A	c.(1456-1458)GGA>GAA	p.G486E	EXPH5_uc010rvy.1_Missense_Mutation_p.G298E|EXPH5_uc010rvz.1_Missense_Mutation_p.G330E|EXPH5_uc010rwa.1_Missense_Mutation_p.G410E	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	486					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GAAAGAATGTCCTTTCTCTTG	0.423													27	45					0	0	0.001061	0	0
ALG9	79796	broad.mit.edu	37	11	111739396	111739396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:111739396G>A	uc001pmb.2	-	4	433	c.334C>T	c.(334-336)CGC>TGC	p.R112C	ALG9_uc001ply.2_5'UTR|ALG9_uc001plz.2_5'UTR|ALG9_uc010rwm.1_Missense_Mutation_p.R112C|ALG9_uc010rwn.1_Missense_Mutation_p.R66C|ALG9_uc010rwo.1_5'UTR|ALG9_uc009yyh.1_Silent_p.F30F	NM_001077690	NP_001071158	Q9H6U8	ALG9_HUMAN	asparagine-linked glycosylation 9 protein	112	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			large_intestine(1)|ovary(1)	2		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;6.81e-07)|BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|all cancers(92;1.3e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0587)		GCATAGGAGCGAATGGCATAT	0.433													20	33					0	0	0.000958	0	0
FDXACB1	91893	broad.mit.edu	37	11	111746467	111746467	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:111746467G>A	uc001pmc.3	-	5	1351	c.1054C>T	c.(1054-1056)CTA>TTA	p.L352L	ALG9_uc010rwo.1_Intron|FDXACB1_uc009yyi.2_Silent_p.L203L	NM_138378	NP_612387	Q9BRP7	FDXA1_HUMAN	ferredoxin-fold anticodon binding domain	352					phenylalanyl-tRNA aminoacylation|tRNA processing		ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0						ACATGCACTAGGAGAGAAGGT	0.473													35	61					0	0	0.004289	0	0
DLAT	1737	broad.mit.edu	37	11	111914232	111914233	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:111914232_111914233CT>TC	uc001pmo.2	+	8	1831_1832	c.1172_1173CT>TC	c.(1171-1173)TCT>TTC	p.S391F	DLAT_uc009yyk.1_Missense_Mutation_p.S286F|DLAT_uc010rwr.1_Missense_Mutation_p.S264F	NM_001931	NP_001922	P10515	ODP2_HUMAN	dihydrolipoamide S-acetyltransferase precursor	391					glycolysis|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial pyruvate dehydrogenase complex	dihydrolipoyllysine-residue acetyltransferase activity|protein binding				0		all_cancers(61;4.53e-11)|all_epithelial(67;2.76e-06)|Melanoma(852;9.42e-06)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0512)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)		Epithelial(105;4.87e-07)|BRCA - Breast invasive adenocarcinoma(274;6.83e-07)|all cancers(92;9.63e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0557)	NADH(DB00157)	GATATCGACTCTTTTGTGCCTA	0.391													48	90					0	0	0.004672	0	0
DLAT	1737	broad.mit.edu	37	11	111915933	111915933	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:111915933C>T	uc001pmo.2	+	9	1928	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	DLAT_uc009yyk.1_Silent_p.I318I|DLAT_uc010rwr.1_Silent_p.I296I	NM_001931	NP_001922	P10515	ODP2_HUMAN	dihydrolipoamide S-acetyltransferase precursor	423	Catalytic (By similarity).				glycolysis|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial pyruvate dehydrogenase complex	dihydrolipoyllysine-residue acetyltransferase activity|protein binding				0		all_cancers(61;4.53e-11)|all_epithelial(67;2.76e-06)|Melanoma(852;9.42e-06)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0512)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)		Epithelial(105;4.87e-07)|BRCA - Breast invasive adenocarcinoma(274;6.83e-07)|all cancers(92;9.63e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0557)	NADH(DB00157)	TCACAGATATCCCAATCAGCA	0.463													60	73					0	0	0.003610	0	0
BCO2	83875	broad.mit.edu	37	11	112086976	112086976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:112086976C>T	uc001pnf.2	+	11	1666	c.1549C>T	c.(1549-1551)CCT>TCT	p.P517S	BCO2_uc001png.2_Missense_Mutation_p.P444S|BCO2_uc001pnh.2_Missense_Mutation_p.P483S|BCO2_uc010rwt.1_Missense_Mutation_p.P412S|BCO2_uc009yyn.2_Missense_Mutation_p.P477S|BCO2_uc001pni.2_Missense_Mutation_p.P483S	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	517					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TCCCTCAGAACCTGTTTTTGT	0.418													30	41					0	0	0.003755	0	0
NCAM1	4684	broad.mit.edu	37	11	113141059	113141059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:113141059G>A	uc001pns.2	+	3	453	c.421G>A	c.(421-423)GGA>AGA	p.G141R	uc010rwu.1_Missense_Mutation_p.H122Y|NCAM1_uc001pnt.2_5'Flank			P13591	NCAM1_HUMAN	SubName: Full=cDNA FLJ52974, highly similar to Neural cell adhesion molecule 1, 140 kDa isoform;	761	Cytoplasmic (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		CAACCTGTGTGGAAAAGCCGG	0.592													22	40					0	0	0.002299	0	0
DRD2	1813	broad.mit.edu	37	11	113287637	113287637	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:113287637C>T	uc001pnz.2	-	3	801	c.480G>A	c.(478-480)TGG>TGA	p.W160*	DRD2_uc010rwv.1_Nonsense_Mutation_p.W159*|DRD2_uc001poa.3_Nonsense_Mutation_p.W160*|DRD2_uc001pob.3_Nonsense_Mutation_p.W160*|DRD2_uc009yyr.1_Nonsense_Mutation_p.W160*	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	160	Helical; Name=4; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	AGGACAGGACCCAGACGATGG	0.592													6	12					0	0	0.001168	0	0
BUD13	84811	broad.mit.edu	37	11	116633887	116633887	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:116633887G>T	uc001ppn.2	-	4	452	c.418C>A	c.(418-420)CCT>ACT	p.P140T	BUD13_uc001ppo.2_Missense_Mutation_p.P140T|BUD13_uc009yzc.2_Missense_Mutation_p.P140T	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	140	Arg-rich.									large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		TCCTTCCTAGGAGATGGATCT	0.562													111	178					1.54401e-80	2.69199e-80	0.003610	1	0
PCSK7	9159	broad.mit.edu	37	11	117096732	117096732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:117096732G>A	uc001pqr.2	-	6	976	c.775C>T	c.(775-777)CGG>TGG	p.R259W		NM_004716	NP_004707	Q16549	PCSK7_HUMAN	proprotein convertase subtilisin/kexin type 7	259	Catalytic.|Extracellular (Potential).				peptide hormone processing	integral to Golgi membrane	serine-type endopeptidase activity				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|Epithelial(105;6.71e-05)|all cancers(92;0.000537)		TCCAGTACCCGGATACCTAGG	0.542			T	IGH@	MLCLS						OREG0021371	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	22					0	0	0.004990	0	0
CEP164	22897	broad.mit.edu	37	11	117252422	117252422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:117252422C>T	uc001prc.2	+	13	1562	c.1415C>T	c.(1414-1416)TCT>TTT	p.S472F	CEP164_uc001prb.2_Missense_Mutation_p.S475F|CEP164_uc010rxk.1_Missense_Mutation_p.S446F|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_5'Flank	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	472	Glu-rich.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		ACCAGGTTATCTCCTCCACTT	0.647													4	9					0	0	0.000602	0	0
CEP164	22897	broad.mit.edu	37	11	117279710	117279710	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:117279710C>T	uc001prc.2	+	29	3861	c.3714C>T	c.(3712-3714)TCC>TCT	p.S1238S	CEP164_uc001prb.2_Silent_p.S1241S|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Silent_p.S671S	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1238					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		AATCTTTTTCCCCGCCTCACC	0.567													10	14					0	0	0.000443	0	0
DSCAML1	57453	broad.mit.edu	37	11	117340694	117340694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:117340694G>A	uc001prh.1	-	16	3138	c.3136C>T	c.(3136-3138)CCC>TCC	p.P1046S		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	986	Extracellular (Potential).|Fibronectin type-III 2.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GGCCCATCGGGAGCTGAGCAG	0.567													25	45					0	0	0.001271	0	0
FXYD6	53826	broad.mit.edu	37	11	117711058	117711058	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:117711058C>A	uc001pro.1	-	6	301	c.235G>T	c.(235-237)GTG>TTG	p.V79L	FXYD6_uc001prn.1_Intron|FXYD6_uc001prp.1_Missense_Mutation_p.V79L|FXYD6_uc001prq.1_Missense_Mutation_p.V79L|FXYD6_uc001prr.1_Missense_Mutation_p.V79L|FXYD6_uc009yzq.1_Missense_Mutation_p.V79L	NM_022003	NP_071286	Q9H0Q3	FXYD6_HUMAN	FXYD domain-containing ion transport regulator 6	79	Cytoplasmic (Potential).					integral to membrane|plasma membrane	ion channel activity			central_nervous_system(1)|skin(1)	2	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|Breast(348;0.111)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.89e-05)|Epithelial(105;0.00122)		AGGTTCTCCACCTGGGCTTCC	0.587													15	38					4.96729e-08	8.5763e-08	0.001216	1	0
IL10RA	3587	broad.mit.edu	37	11	117869548	117869548	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:117869548A>G	uc001prv.2	+	7	1006	c.929A>G	c.(928-930)AAC>AGC	p.N310S	IL10RA_uc010rxl.1_Missense_Mutation_p.N290S|IL10RA_uc010rxm.1_Missense_Mutation_p.N290S|IL10RA_uc010rxn.1_Missense_Mutation_p.N161S|IL10RA_uc001prw.2_Missense_Mutation_p.N161S	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	310	Cytoplasmic (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		GAGCTGAAGAACTTGGACCTG	0.597													10	16					0	0	0.000443	0	0
AMICA1	120425	broad.mit.edu	37	11	118067453	118067453	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:118067453G>A	uc001psk.2	-	9	1263	c.1089C>T	c.(1087-1089)ACC>ACT	p.T363T	AMICA1_uc001psg.2_Silent_p.T173T|AMICA1_uc001psh.2_Silent_p.T324T|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Silent_p.T353T|AMICA1_uc001psj.2_Silent_p.T352T|AMICA1_uc010rxw.1_Silent_p.T324T|AMICA1_uc010rxx.1_3'UTR	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	363	Cytoplasmic (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TTCTCACCATGGTCATGTAGG	0.542													39	58					0	0	0.002222	0	0
UBE4A	9354	broad.mit.edu	37	11	118255600	118255600	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:118255600C>T	uc001psw.2	+	15	2481	c.2352C>T	c.(2350-2352)TTC>TTT	p.F784F	UBE4A_uc001psv.2_Silent_p.F791F	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	784					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		CCCCACTTTTCCTCCGCTTTC	0.363													63	68					0	0	0.003610	0	0
ATP5L	10632	broad.mit.edu	37	11	118277725	118277725	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:118277725C>T	uc001psx.2	+	2	403	c.126C>T	c.(124-126)ACC>ACT	p.T42T		NM_006476	NP_006467	O75964	ATP5L_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	42					ATP catabolic process|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity|protein binding				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)		TTCCTCCCACCCCTGCTGAGA	0.443													11	10					0	0	0.000673	0	0
PHLDB1	23187	broad.mit.edu	37	11	118516539	118516539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:118516539C>T	uc001ptr.1	+	18	3856	c.3503C>T	c.(3502-3504)TCG>TTG	p.S1168L	PHLDB1_uc001pts.2_Missense_Mutation_p.S1168L|PHLDB1_uc001ptt.2_Missense_Mutation_p.S1121L|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Missense_Mutation_p.S983L|PHLDB1_uc001ptw.1_Missense_Mutation_p.S523L|PHLDB1_uc009zai.1_Missense_Mutation_p.S204L|PHLDB1_uc001ptx.1_Missense_Mutation_p.S204L	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	1168	Potential.										0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CTCATGGAGTCGAGGGTGAGT	0.592													17	25					0	0	0.004990	0	0
MFRP	83552	broad.mit.edu	37	11	119216990	119216990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:119216990G>A	uc001pwj.2	-	2	309	c.149C>T	c.(148-150)CCC>CTC	p.P50L	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Missense_Mutation_p.P50L	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	76	Collagen-like.					collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		ACCATGCCAGGGAGCTGGGAC	0.602													4	8					0	0	0.000248	0	0
GRIK4	2900	broad.mit.edu	37	11	120856867	120856867	+	Silent	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:120856867C>G	uc001pxn.2	+	21	3056	c.2769C>G	c.(2767-2769)CCC>CCG	p.P923P	GRIK4_uc009zaw.1_Silent_p.P923P|GRIK4_uc009zax.1_Silent_p.P923P	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	923	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	GCGTCTGCCCCGAGTGCCGCC	0.741													3	9					0	0	0.004672	0	0
TECTA	7007	broad.mit.edu	37	11	120979978	120979978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:120979978C>T	uc010rzo.1	+	3	257	c.257C>T	c.(256-258)TCC>TTC	p.S86F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	86					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ACGCCAGAATCCTTTCCCCTG	0.483													20	24					0	0	0.000958	0	0
TECTA	7007	broad.mit.edu	37	11	120999045	120999045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:120999045G>A	uc010rzo.1	+	8	2359	c.2359G>A	c.(2359-2361)GAA>AAA	p.E787K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	787	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CGGGGCTTCGGAAGTCAAGGT	0.592													9	18					0	0	0.000443	0	0
TECTA	7007	broad.mit.edu	37	11	121037448	121037448	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:121037448C>T	uc010rzo.1	+	17	5545	c.5545C>T	c.(5545-5547)CAG>TAG	p.Q1849*		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1849	ZP.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TATCTCCTTTCAGATCAACAA	0.507													37	39					0	0	0.001485	0	0
TECTA	7007	broad.mit.edu	37	11	121060560	121060560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:121060560C>T	uc010rzo.1	+	22	6338	c.6338C>T	c.(6337-6339)ACC>ATC	p.T2113I		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	2113					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GTAACAGGAACCCTGCAGGAG	0.572													18	27					0	0	0.001523	0	0
SORL1	6653	broad.mit.edu	37	11	121340715	121340715	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:121340715G>A	uc001pxx.2	+	2	366	c.286_splice	c.e2-1	p.V96_splice		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class						cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ATCTCTTTCAGGTTAGTCTGA	0.473													30	41					0	0	0.001786	0	0
SORL1	6653	broad.mit.edu	37	11	121391533	121391533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:121391533G>A	uc001pxx.2	+	9	1459	c.1379G>A	c.(1378-1380)GGA>GAA	p.G460E		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	460	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GCCTTCACGGGATATGGAGAG	0.413													17	28					0	0	0.004007	0	0
SORL1	6653	broad.mit.edu	37	11	121416052	121416052	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:121416052C>T	uc001pxx.2	+	14	2045	c.1965C>T	c.(1963-1965)ACC>ACT	p.T655T		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	655	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AACGGCGGACCCCCCATGCCA	0.542													15	20					0	0	0.003163	0	0
SORL1	6653	broad.mit.edu	37	11	121490577	121490578	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:121490577_121490578CC>TT	uc001pxx.2	+	43	5920_5921	c.5840_5841CC>TT	c.(5839-5841)TCC>TTT	p.S1947F	SORL1_uc010rzp.1_Missense_Mutation_p.S793F|SORL1_uc010rzq.1_Missense_Mutation_p.S562F	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1947	Extracellular (Potential).|Fibronectin type-III 5.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity	p.S1947S(1)		ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GGCAAAACCTCCGTGGTCATCA	0.559													28	47					0	0	0.004672	0	0
OR6X1	390260	broad.mit.edu	37	11	123624612	123624612	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:123624612G>A	uc010rzy.1	-	1	615	c.615C>T	c.(613-615)ATC>ATT	p.I205I		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		GTGACCCTGGGATCACAAGGA	0.458													41	56					0	0	0.001287	0	0
OR8D4	338662	broad.mit.edu	37	11	123777540	123777540	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:123777540C>T	uc010saa.1	+	1	402	c.402C>T	c.(400-402)GTC>GTT	p.V134V		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		TCTACAGGGTCATCATGTCCC	0.498													35	60					0	0	0.003755	0	0
OR6T1	219874	broad.mit.edu	37	11	123813630	123813631	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:123813630_123813631CC>GT	uc010sab.1	-	1	915_916	c.915_916GG>AC	c.(913-918)TTGGGG>TTACGG	p.G306R		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CTGGGCCACCCCAAGGCTTCTC	0.45													40	50					0	0	0.004672	0	0
OR10G9	219870	broad.mit.edu	37	11	123893873	123893873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:123893873C>T	uc010sad.1	+	1	154	c.154C>T	c.(154-156)CAC>TAC	p.H52Y		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GGTGGATTCTCACCTCCACAC	0.552													22	33					0	0	0.005443	0	0
OR10G7	390265	broad.mit.edu	37	11	123909555	123909555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:123909555G>A	uc001pzq.1	-	1	154	c.154C>T	c.(154-156)CAC>TAC	p.H52Y		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GTGTGGAGGTGAGAATCCACC	0.557													7	47					0	0	0.000443	0	0
OR8D1	283159	broad.mit.edu	37	11	124179772	124179772	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:124179772C>T	uc010sag.1	-	1	891	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ATGCTTTCTTCACATCCTTAT	0.408													23	28					0	0	0.002299	0	0
OR8B2	26595	broad.mit.edu	37	11	124253219	124253220	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:124253219_124253220GG>AA	uc010sai.1	-	1	20_21	c.20_21CC>TT	c.(19-21)TCC>TTT	p.S7F	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		CAGTCACTAAGGAGTTGTTTCT	0.356													18	58					0	0	0.004672	0	0
OR8B3	390271	broad.mit.edu	37	11	124266346	124266346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:124266346C>T	uc010saj.1	-	1	902	c.902G>A	c.(901-903)AGG>AAG	p.R301K	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		CAGAGCTTTCCTCAGTGCAAC	0.343													26	60					0	0	0.001061	0	0
OR8B3	390271	broad.mit.edu	37	11	124266917	124266917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:124266917C>T	uc010saj.1	-	1	331	c.331G>A	c.(331-333)GAA>AAA	p.E111K	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		ATGTAACATTCAGAGATGACA	0.388													16	23					0	0	0.000743	0	0
OR8B12	219858	broad.mit.edu	37	11	124413460	124413460	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:124413460G>A	uc010sam.1	-	1	91	c.91C>T	c.(91-93)CTG>TTG	p.L31L		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TAGAAACCCAGAAACAGGAAG	0.507													21	33					0	0	0.001216	0	0
OR8B12	219858	broad.mit.edu	37	11	124413475	124413475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:124413475G>A	uc010sam.1	-	1	76	c.76C>T	c.(76-78)CTC>TTC	p.L26F		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		AGGAAGAAGAGGGGGATCCGC	0.537													19	28					0	0	0.000958	0	0
CDON	50937	broad.mit.edu	37	11	125867117	125867117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:125867117G>A	uc009zbw.2	-	12	2475	c.2347C>T	c.(2347-2349)CGT>TGT	p.R783C	CDON_uc001qdb.3_Missense_Mutation_p.R160C|CDON_uc001qdc.3_Missense_Mutation_p.R783C	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	783	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		TCTAAACTACGAACTTCCACT	0.353													19	24					0	0	0.002299	0	0
ETS1	2113	broad.mit.edu	37	11	128354878	128354878	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:128354878G>A	uc010sbs.1	-	5	886	c.570C>T	c.(568-570)CCC>CCT	p.P190P	ETS1_uc001qej.2_Silent_p.P234P|ETS1_uc009zch.2_Intron|ETS1_uc009zcg.2_Silent_p.P190P	NM_005238	NP_005229	P14921	ETS1_HUMAN	v-ets erythroblastosis virus E26 oncogene	190					cell motility|immune response|induction of apoptosis|negative regulation of cell cycle|negative regulation of cell cycle|negative regulation of cell proliferation|PML body organization|positive regulation of cellular component movement|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|response to antibiotic|transcription from RNA polymerase II promoter	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			lung(4)|central_nervous_system(1)|pleura(1)	6	all_hematologic(175;0.0537)	Lung NSC(97;0.000542)|all_lung(97;0.000665)|Breast(109;0.00765)|all_neural(223;0.0351)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.47e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0174)|LUSC - Lung squamous cell carcinoma(976;0.0815)|Lung(307;0.0833)		CCGAGCTGATGGGATGGAGCG	0.522													48	50					0	0	0.003610	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709258	128709258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:128709258G>A	uc001qeo.1	-	2	989	c.938C>T	c.(937-939)TCC>TTC	p.S313F	KCNJ1_uc001qep.1_Missense_Mutation_p.S294F|KCNJ1_uc001qeq.1_Missense_Mutation_p.S294F|KCNJ1_uc001qer.1_Missense_Mutation_p.S294F|KCNJ1_uc001qes.1_Missense_Mutation_p.S294F	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	313	Cytoplasmic (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	TGGGACATAGGATGTCCGGAC	0.502													19	23					0	0	0.002780	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709480	128709480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:128709480C>T	uc001qeo.1	-	2	767	c.716G>A	c.(715-717)GGA>GAA	p.G239E	KCNJ1_uc001qep.1_Missense_Mutation_p.G220E|KCNJ1_uc001qeq.1_Missense_Mutation_p.G220E|KCNJ1_uc001qer.1_Missense_Mutation_p.G220E|KCNJ1_uc001qes.1_Missense_Mutation_p.G220E	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	239	Cytoplasmic (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	AATGGTCTCTCCTTCAGGAGT	0.408													70	81					0	0	0.003610	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128843307	128843307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:128843307G>A	uc009zcp.2	-	21	3052	c.3052C>T	c.(3052-3054)CCT>TCT	p.P1018S	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.P669S	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1018					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						GAATCCTGAGGGGGGTCATGG	0.493													28	59					0	0	0.001786	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128844405	128844405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:128844405G>A	uc009zcp.2	-	20	2645	c.2645C>T	c.(2644-2646)TCC>TTC	p.S882F	ARHGAP32_uc009zcq.1_Missense_Mutation_p.S842F|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.S533F	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	882					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						TTCAGTAAAGGAGGATGGCTT	0.438													31	60					0	0	0.003271	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128850476	128850476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:128850476G>A	uc009zcp.2	-	17	1906	c.1906C>T	c.(1906-1908)CAT>TAT	p.H636Y	ARHGAP32_uc009zcq.1_Missense_Mutation_p.H596Y|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.H287Y	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	636					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						ATTATGGTATGAAATTTCCCC	0.373													26	42					0	0	0.001061	0	0
PRDM10	56980	broad.mit.edu	37	11	129772410	129772410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:129772410C>T	uc001qfm.2	-	22	3513	c.3281G>A	c.(3280-3282)GGT>GAT	p.G1094D	PRDM10_uc001qfj.2_Missense_Mutation_p.G995D|PRDM10_uc001qfk.2_Missense_Mutation_p.G957D|PRDM10_uc001qfl.2_Missense_Mutation_p.G1008D|PRDM10_uc010sbx.1_Missense_Mutation_p.G1004D|PRDM10_uc001qfn.2_Missense_Mutation_p.G1090D	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	1081					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		CACATAATGACCCTAGAGGAA	0.478													6	15					0	0	0.001168	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130278668	130278669	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:130278668_130278669CC>TT	uc001qgg.3	-	7	2275_2276	c.1917_1918GG>AA	c.(1915-1920)GAGGCC>GAAACC	p.A640T	ADAMTS8_uc001qgf.2_Missense_Mutation_p.A121T	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	640	Cys-rich.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CTCACCTTGGCCTCGAACACTT	0.639													22	32					0	0	0.004672	0	0
NTM	50863	broad.mit.edu	37	11	132177686	132177686	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:132177686C>T	uc001qgp.2	+	4	1294	c.630C>T	c.(628-630)CCC>CCT	p.P210P	NTM_uc001qgm.2_Silent_p.P210P|NTM_uc010sch.1_Silent_p.P201P|NTM_uc010sci.1_Silent_p.P210P|NTM_uc010scj.1_Silent_p.P169P|NTM_uc001qgo.2_Silent_p.P210P|NTM_uc001qgq.2_Silent_p.P210P|NTM_uc001qgr.2_5'UTR	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	210	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						TGGCCGCGCCCGTGGTACGGA	0.577													10	14					0	0	0.000673	0	0
NTM	50863	broad.mit.edu	37	11	132184491	132184491	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:132184491C>T	uc001qgp.2	+	6	1492	c.828C>T	c.(826-828)TTC>TTT	p.F276F	NTM_uc001qgm.2_Silent_p.F276F|NTM_uc010sch.1_Silent_p.F267F|NTM_uc010sci.1_Silent_p.F276F|NTM_uc010scj.1_Silent_p.F235F|NTM_uc001qgo.2_Silent_p.F276F|NTM_uc001qgq.2_Silent_p.F276F|NTM_uc001qgr.2_Silent_p.F58F	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	276	Ig-like C2-type 3.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						ACAGACCTTTCCTCTCAAAAC	0.428													29	32					0	0	0.002836	0	0
SPATA19	219938	broad.mit.edu	37	11	133714482	133714483	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:133714482_133714483AG>GA	uc001qgv.1	-	3	239_240	c.188_189CT>TC	c.(187-189)CCT>CTC	p.P63L		NM_174927	NP_777587	Q7Z5L4	SPT19_HUMAN	spermatogenesis associated 19 precursor	63					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrial outer membrane					0	all_hematologic(175;0.127)	all_cancers(12;5.59e-17)|all_epithelial(12;2.65e-12)|all_lung(97;0.00045)|Lung NSC(97;0.000861)|Breast(109;0.000873)|Medulloblastoma(222;0.0425)|Esophageal squamous(93;0.0844)|all_neural(223;0.117)		Epithelial(10;4.36e-10)|all cancers(11;7.1e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00286)|Lung(977;0.207)		CACCCTGGGAAGGGTGGTTGAT	0.51													16	39					0	0	0.004672	0	0
NCAPD3	23310	broad.mit.edu	37	11	134079247	134079247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:134079247G>A	uc001qhd.1	-	5	1298	c.692C>T	c.(691-693)TCC>TTC	p.S231F	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	231					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		TTCTTTCAAGGAAAACTTTGG	0.368													27	37					0	0	0.005443	0	0
GLB1L3	112937	broad.mit.edu	37	11	134179545	134179545	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:134179545C>T	uc009zdf.2	+	11	1347	c.987C>T	c.(985-987)TTC>TTT	p.F329F	GLB1L3_uc010scu.1_Silent_p.F30F|GLB1L3_uc001qho.3_RNA	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	329					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		TGTCTGAATTCATCAAATATG	0.428													6	13					0	0	0.003080	0	0
GLB1L2	89944	broad.mit.edu	37	11	134241693	134241693	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:134241693C>T	uc001qhp.2	+	15	1664	c.1476C>T	c.(1474-1476)AAC>AAT	p.N492N	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	492					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		GGCGAGTCAACTATGGGGAGA	0.547													23	29					0	0	0.001271	0	0
IQSEC3	440073	broad.mit.edu	37	12	278180	278180	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:278180G>A	uc001qhw.1	+	9	2070	c.2064G>A	c.(2062-2064)TGG>TGA	p.W688*	IQSEC3_uc001qhu.1_Nonsense_Mutation_p.W688*	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	991	Potential.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		ATTCCTTAGGGGAGCTGGAGA	0.587													33	34					0	0	0.004878	0	0
SLC6A13	6540	broad.mit.edu	37	12	344366	344366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:344366G>A	uc001qic.1	-	7	774	c.721C>T	c.(721-723)CCT>TCT	p.P241S	SLC6A13_uc009zdj.1_Missense_Mutation_p.P241S|SLC6A13_uc010sdl.1_Missense_Mutation_p.P149S|SLC6A13_uc010sdm.1_Missense_Mutation_p.P122S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	241	Helical; Name=5; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			ATGAGGTAAGGAAATGTGGCC	0.453													12	9					0	0	0.002450	0	0
LRTM2	654429	broad.mit.edu	37	12	1943471	1943471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:1943471G>A	uc001qjt.2	+	5	1503	c.697G>A	c.(697-699)GAG>AAG	p.E233K	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.E233K|LRTM2_uc010sdx.1_Missense_Mutation_p.E233K|LRTM2_uc001qjv.2_5'UTR	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	233	LRRCT.|Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			CCTGCCCAAGGAGCTGAGGGG	0.582													11	24					0	0	0.001855	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1995404	1995404	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:1995404G>A	uc001qjp.2	-	8	1209	c.978C>T	c.(976-978)TTC>TTT	p.F326F	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	326	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TGATATTAATGAAGTCATTCT	0.488													10	22					0	0	0.000673	0	0
CACNA1C	775	broad.mit.edu	37	12	2705123	2705123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:2705123C>T	uc009zdu.1	+	20	3060	c.2747C>T	c.(2746-2748)TCC>TTC	p.S916F	CACNA1C_uc009zdv.1_Missense_Mutation_p.S913F|CACNA1C_uc001qkb.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkc.2_Missense_Mutation_p.S916F|CACNA1C_uc001qke.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkf.2_Missense_Mutation_p.S916F|CACNA1C_uc001qjz.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkd.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkg.2_Missense_Mutation_p.S916F|CACNA1C_uc009zdw.1_Missense_Mutation_p.S916F|CACNA1C_uc001qkh.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkl.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkn.2_Missense_Mutation_p.S916F|CACNA1C_uc001qko.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkp.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkr.2_Missense_Mutation_p.S916F|CACNA1C_uc001qku.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkq.2_Missense_Mutation_p.S916F|CACNA1C_uc001qks.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkt.2_Missense_Mutation_p.S916F|CACNA1C_uc001qka.1_Missense_Mutation_p.S451F|CACNA1C_uc001qki.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkj.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkk.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkm.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkw.2_Missense_Mutation_p.S205F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	916	Helical; Name=S1 of repeat III; (Potential).|III.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGCAGCATTTCCCTGGCTGCT	0.582													9	33					0	0	0.000673	0	0
CACNA1C	775	broad.mit.edu	37	12	2786382	2786382	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:2786382C>T	uc009zdu.1	+	42	5408	c.5095C>T	c.(5095-5097)CTG>TTG	p.L1699L	CACNA1C_uc009zdv.1_Silent_p.L1648L|CACNA1C_uc001qkb.2_Silent_p.L1651L|CACNA1C_uc001qkc.2_Silent_p.L1670L|CACNA1C_uc001qke.2_Silent_p.L1640L|CACNA1C_uc001qkf.2_Silent_p.L1659L|CACNA1C_uc001qjz.2_Silent_p.L1651L|CACNA1C_uc001qkd.2_Silent_p.L1670L|CACNA1C_uc001qkg.2_Silent_p.L1657L|CACNA1C_uc009zdw.1_Silent_p.L1692L|CACNA1C_uc001qkh.2_Silent_p.L1659L|CACNA1C_uc001qkl.2_Silent_p.L1699L|CACNA1C_uc001qkn.2_Silent_p.L1651L|CACNA1C_uc001qko.2_Silent_p.L1671L|CACNA1C_uc001qkp.2_Silent_p.L1651L|CACNA1C_uc001qkr.2_Silent_p.L1668L|CACNA1C_uc001qku.2_Silent_p.L1651L|CACNA1C_uc001qkq.2_Silent_p.L1679L|CACNA1C_uc001qks.2_Silent_p.L1651L|CACNA1C_uc001qkt.2_Silent_p.L1670L|CACNA1C_uc001qki.1_Silent_p.L1387L|CACNA1C_uc001qkj.1_Silent_p.L1387L|CACNA1C_uc001qkk.1_Silent_p.L1387L|CACNA1C_uc001qkm.1_Silent_p.L1376L|CACNA1C_uc010sea.1_Silent_p.L342L|uc001qkx.1_RNA|CACNA1C_uc001qky.1_5'Flank	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1699	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CGCGCTGTCTCTGCAGGTGAG	0.637													11	12					0	0	0.001855	0	0
CCND2	894	broad.mit.edu	37	12	4409166	4409166	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:4409166C>T	uc001qmo.2	+	5	1166	c.861C>T	c.(859-861)ATC>ATT	p.I287I		NM_001759	NP_001750	P30279	CCND2_HUMAN	cyclin D2	287					cell division|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation	cyclin-dependent protein kinase holoenzyme complex|cytoplasm|membrane|nucleus	protein kinase binding			haematopoietic_and_lymphoid_tissue(1)|breast(1)|kidney(1)	3			all cancers(3;4.15e-10)|GBM - Glioblastoma multiforme(3;6.34e-05)|Colorectal(7;0.00245)|OV - Ovarian serous cystadenocarcinoma(31;0.00301)|COAD - Colon adenocarcinoma(12;0.0264)|STAD - Stomach adenocarcinoma(119;0.206)			TGCGGGATATCGACCTGTGAG	0.517			T	IGL@	NHL,CLL								10	22					0	0	0.000673	0	0
KCNA6	3742	broad.mit.edu	37	12	4919844	4919844	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:4919844C>T	uc001qng.2	+	1	1503	c.637C>T	c.(637-639)CGA>TGA	p.R213*		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	213						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TGGTGTGAGTCGAGTCTCCCC	0.532										HNSCC(72;0.22)			15	18					0	0	0.002450	0	0
ANO2	57101	broad.mit.edu	37	12	5744481	5744481	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:5744481C>T	uc001qnm.2	-	17	1725	c.1653G>A	c.(1651-1653)GTG>GTA	p.V551V		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	556	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GATACACTATCACCCCAAAGA	0.488													14	16					0	0	0.004007	0	0
VWF	7450	broad.mit.edu	37	12	6125315	6125315	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:6125315G>A	uc001qnn.1	-	31	5645	c.5395C>T	c.(5395-5397)CTG>TTG	p.L1799L	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1799	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TCCGTGACCAGGATGACCACC	0.557													18	21					0	0	0.001882	0	0
VWF	7450	broad.mit.edu	37	12	6232351	6232351	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:6232351G>A	uc001qnn.1	-	2	262	c.12C>T	c.(10-12)GCC>GCT	p.A4A	VWF_uc010set.1_Silent_p.A4A|VWF_uc001qno.1_5'UTR	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	4					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CGGCAAATCTGGCAGGAATCA	0.557													28	38					0	0	0.002445	0	0
LEPREL2	10536	broad.mit.edu	37	12	6946927	6946927	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:6946927C>T	uc001qra.1	+	14	1777	c.1743C>T	c.(1741-1743)CAC>CAT	p.H581H	LEPREL2_uc001qqz.1_Silent_p.H388H|LEPREL2_uc001qrb.1_Silent_p.H388H|GNB3_uc001qrc.2_5'Flank|GNB3_uc001qrd.2_5'Flank	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	581	Fe2OG dioxygenase.				negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	ACCTGAGTCACCCAGTGCACG	0.652													6	11					0	0	0.000443	0	0
ATN1	1822	broad.mit.edu	37	12	7047681	7047681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7047681C>T	uc001qrw.1	+	7	2792	c.2555C>T	c.(2554-2556)CCA>CTA	p.P852L	ATN1_uc001qrx.1_Missense_Mutation_p.P852L	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	852					cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding	p.P852Q(1)		ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GTGGAATGCCCATCTCTGGGC	0.592											OREG0021641	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	12					0	0	0.003163	0	0
C1R	715	broad.mit.edu	37	12	7244175	7244175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7244175G>A	uc010sfy.1	-	2	163	c.104C>T	c.(103-105)CCC>CTC	p.P35L	C1R_uc010sfz.1_Missense_Mutation_p.P49L|C1R_uc010sga.1_Missense_Mutation_p.P35L	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	35	CUB 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GTAAGGCTTGGGGAACAGAGG	0.557													3	3					0	0	0.004672	0	0
ACSM4	341392	broad.mit.edu	37	12	7463328	7463328	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7463328C>T	uc001qsx.1	+	3	606	c.606C>T	c.(604-606)TTC>TTT	p.F202F		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	202					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GGCTCAGCTTCCAGGAGTTAT	0.478													10	12					0	0	0.000978	0	0
ACSM4	341392	broad.mit.edu	37	12	7473360	7473360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7473360C>T	uc001qsx.1	+	6	961	c.961C>T	c.(961-963)CCC>TCC	p.P321S		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	321					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GTGCAGTCCTCCCACTGTGTA	0.468													11	28					0	0	0.000978	0	0
CD163L1	283316	broad.mit.edu	37	12	7528404	7528404	+	Missense_Mutation	SNP	C	T	T	rs150856487	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7528404C>T	uc001qsy.2	-	10	2604	c.2578G>A	c.(2578-2580)GAA>AAA	p.E860K	CD163L1_uc010sge.1_Missense_Mutation_p.E870K	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	860	SRCR 8.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TGGAACTTTTCGGCCCAAGTT	0.458													27	49					0	0	0.001512	0	0
CD163L1	283316	broad.mit.edu	37	12	7531710	7531710	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7531710G>A	uc001qsy.2	-	9	2261	c.2235C>T	c.(2233-2235)TTC>TTT	p.F745F	CD163L1_uc010sge.1_Silent_p.F755F	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	745	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TTCTTTCTGTGAAATGAGGCT	0.473													36	56					0	0	0.002222	0	0
CD163L1	283316	broad.mit.edu	37	12	7531772	7531772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7531772C>T	uc001qsy.2	-	9	2199	c.2173G>A	c.(2173-2175)GAA>AAA	p.E725K	CD163L1_uc010sge.1_Missense_Mutation_p.E735K	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	725	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CAAACAACTTCAGCAATGTTC	0.483													33	44					0	0	0.004289	0	0
CD163L1	283316	broad.mit.edu	37	12	7550916	7550916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7550916C>T	uc001qsy.2	-	7	1699	c.1673G>A	c.(1672-1674)AGT>AAT	p.S558N	CD163L1_uc010sge.1_Missense_Mutation_p.S568N	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	558	SRCR 5.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TCCCCATCCACTGTGTTCACA	0.388													27	46					0	0	0.001271	0	0
CD163L1	283316	broad.mit.edu	37	12	7556422	7556422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7556422C>T	uc001qsy.2	-	6	1143	c.1117G>A	c.(1117-1119)GAT>AAT	p.D373N	CD163L1_uc010sge.1_Missense_Mutation_p.D383N	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	373	SRCR 4.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TTACTTCCATCTGCTAGTCGC	0.453													19	40					0	0	0.001882	0	0
CD163L1	283316	broad.mit.edu	37	12	7586211	7586211	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7586211C>T	uc001qsy.2	-	3	230	c.204G>A	c.(202-204)CAG>CAA	p.Q68Q	CD163L1_uc010sge.1_Silent_p.Q68Q	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	68	SRCR 1.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CAGTCCCCCACTGTCCCTGGA	0.498													45	45					0	0	0.003610	0	0
CD163	9332	broad.mit.edu	37	12	7640126	7640126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7640126C>T	uc001qsz.3	-	8	2007	c.1879G>A	c.(1879-1881)GGA>AGA	p.G627R	CD163_uc001qta.3_Missense_Mutation_p.G627R|CD163_uc009zfw.2_Missense_Mutation_p.G660R	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	627	SRCR 6.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AGGGCAACTCCACATTTAAGC	0.522													31	41					0	0	0.001786	0	0
CD163	9332	broad.mit.edu	37	12	7651761	7651761	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7651761G>A	uc001qsz.3	-	4	609	c.481C>T	c.(481-483)CTG>TTG	p.L161L	CD163_uc001qta.3_Silent_p.L161L|CD163_uc009zfw.2_Silent_p.L161L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	161	SRCR 2.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CCACGCGTCAGCCTCATTTCC	0.413													72	108					0	0	0.003610	0	0
DPPA3	359787	broad.mit.edu	37	12	7867799	7867799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7867799G>A	uc001qtf.2	+	2	181	c.103G>A	c.(103-105)GAG>AAG	p.E35K		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	35						cytoplasm|nucleus					0				Kidney(36;0.0887)		AATCTCCTCCGAGACGTTGAT	0.458													58	71					0	0	0.003610	0	0
CLEC4C	170482	broad.mit.edu	37	12	7882210	7882210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7882210C>T	uc001qtg.1	-	6	798	c.624G>A	c.(622-624)ATG>ATA	p.M208I	CLEC4C_uc001qth.1_Missense_Mutation_p.M208I|CLEC4C_uc001qti.1_Missense_Mutation_p.M177I	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	208	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		AGATCTTCTTCATCTTGCAAA	0.363													25	32					0	0	0.001061	0	0
NANOG	79923	broad.mit.edu	37	12	7942271	7942271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7942271G>A	uc009zfy.1	+	1	277	c.61G>A	c.(61-63)GAA>AAA	p.E21K		NM_024865	NP_079141	Q9H9S0	NANOG_HUMAN	Nanog homeobox	21					cell proliferation|embryo development|somatic stem cell maintenance	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				Kidney(36;0.0872)		CGACTGTAAAGAATCTTCACC	0.448													38	86					0	0	0.001485	0	0
SLC2A14	144195	broad.mit.edu	37	12	7982503	7982503	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7982503G>A	uc001qtk.2	-	10	1234	c.441C>T	c.(439-441)GGC>GGT	p.G147G	SLC2A14_uc001qtl.2_Silent_p.G124G|SLC2A14_uc001qtm.2_Silent_p.G124G|SLC2A14_uc010sgg.1_Silent_p.G38G|SLC2A14_uc001qtn.2_Silent_p.G147G|SLC2A14_uc001qto.2_Intron|SLC2A14_uc010sgh.1_Silent_p.G162G	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	147	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		TAACCAAGCGGCCCAGGATCA	0.532													20	34					0	0	0.001882	0	0
SLC2A14	144195	broad.mit.edu	37	12	7985410	7985410	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:7985410C>A	uc001qtk.2	-	8	881	c.88G>T	c.(88-90)GTC>TTC	p.V30F	SLC2A14_uc001qtl.2_Missense_Mutation_p.V7F|SLC2A14_uc001qtm.2_Missense_Mutation_p.V7F|SLC2A14_uc010sgg.1_5'UTR|SLC2A14_uc001qtn.2_Missense_Mutation_p.V30F|SLC2A14_uc001qto.2_Intron|SLC2A14_uc010sgh.1_Missense_Mutation_p.V45F	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	30	Helical; Name=1; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		GCTGGGGTGACCTGGAGAGAC	0.458											OREG0021654	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	35					1.9806e-07	3.41823e-07	0.002299	1	0
FOXJ2	55810	broad.mit.edu	37	12	8203144	8203144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:8203144C>T	uc001qtu.2	+	10	2649	c.1564C>T	c.(1564-1566)CCC>TCC	p.P522S		NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	522					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		CCCACAAGCTCCCCACCTCTA	0.517													42	44					0	0	0.003610	0	0
A2ML1	144568	broad.mit.edu	37	12	9004564	9004564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:9004564C>T	uc001quz.3	+	19	2517	c.2419C>T	c.(2419-2421)CGT>TGT	p.R807C	A2ML1_uc001qva.1_Missense_Mutation_p.R387C|A2ML1_uc010sgm.1_Missense_Mutation_p.R307C	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	651						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GGAATCCTTTCGTCTTACTGC	0.507													49	89					0	0	0.003610	0	0
PZP	5858	broad.mit.edu	37	12	9316298	9316298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:9316298C>T	uc001qvl.2	-	21	2731	c.2702G>A	c.(2701-2703)AGA>AAA	p.R901K	PZP_uc009zgl.2_Intron|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Intron	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TGTGTCTTTTCTTTTAATCTC	0.443													22	41					0	0	0.003954	0	0
PZP	5858	broad.mit.edu	37	12	9322163	9322163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:9322163C>T	uc001qvl.2	-	16	1893	c.1864G>A	c.(1864-1866)GAT>AAT	p.D622N	PZP_uc009zgl.2_Missense_Mutation_p.D491N|PZP_uc010sgo.1_5'Flank|PZP_uc009zgm.1_5'UTR	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TTGGTGAGATCCTTCACAGTT	0.413													13	24					0	0	0.001855	0	0
CLEC1A	51267	broad.mit.edu	37	12	10223953	10223953	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:10223953T>G	uc001qxb.2	-	6	906	c.822A>C	c.(820-822)GAA>GAC	p.E274D	CLEC1A_uc009zhf.2_Missense_Mutation_p.E186D|CLEC1A_uc001qxc.2_Missense_Mutation_p.E186D|CLEC1A_uc001qxd.2_Missense_Mutation_p.E231D|CLEC1A_uc010sgx.1_Missense_Mutation_p.E172D	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	274	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						CGCCTAATGTTTCAGGGGGGA	0.507													39	66					0	0	0.002522	0	0
KLRK1	22914	broad.mit.edu	37	12	10530807	10530807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:10530807G>A	uc009zhj.2	-	7	621	c.457C>T	c.(457-459)CAT>TAT	p.H153Y	uc001qya.1_Intron|KLRK1_uc001qyb.2_RNA|KLRK1_uc001qyc.2_Missense_Mutation_p.H153Y|KLRK1_uc009zhk.2_Missense_Mutation_p.H153Y|KLRK1_uc001qyd.2_Missense_Mutation_p.H153Y	NM_007360	NP_031386	P26718	NKG2D_HUMAN	NKG2-D type II integral membrane protein	153	Extracellular (Potential).|C-type lectin.				natural killer cell activation|T cell costimulation	integral to plasma membrane	sugar binding				0						CCCATCCAATGATATGACTTC	0.383													32	48					0	0	0.003271	0	0
KLRC4	8302	broad.mit.edu	37	12	10560950	10560950	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:10560950G>A	uc001qye.2	-	3	500	c.318C>T	c.(316-318)TCC>TCT	p.S106S	KLRK1_uc001qyc.2_5'Flank|KLRK1_uc009zhk.2_5'UTR|KLRK1_uc001qyd.2_5'UTR	NM_013431	NP_038459	O43908	NKG2F_HUMAN	killer cell lectin-like receptor subfamily C,	106	Extracellular (Potential).				cellular defense response	integral to membrane	binding|receptor activity				0						TTCTATTCAGGGAAAAATTGT	0.279													14	16					0	0	0.004990	0	0
PRB2	653247	broad.mit.edu	37	12	11546143	11546144	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:11546143_11546144CC>TT	uc010shk.1	-	3	903_904	c.868_869GG>AA	c.(868-870)GGA>AAA	p.G290K		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTTGCTGCCTCCTTGTGGGGGT	0.614													88	101					0	0	0.004672	0	0
PRB2	653247	broad.mit.edu	37	12	11546267	11546267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:11546267C>T	uc010shk.1	-	3	780	c.745G>A	c.(745-747)GGA>AGA	p.G249R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGTTGCCTCCTTGTGGGGGT	0.607													42	78					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11546698	11546698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:11546698C>T	uc010shk.1	-	3	349	c.314G>A	c.(313-315)GGA>GAA	p.G105E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGACTTGTCTCCTTGTGGGGG	0.607													92	230					0	0	0.003610	0	0
BCL2L14	79370	broad.mit.edu	37	12	12232669	12232669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:12232669G>A	uc001rac.2	+	2	631	c.430G>A	c.(430-432)GAA>AAA	p.E144K	ETV6_uc001raa.1_Intron|BCL2L14_uc001raf.1_RNA|BCL2L14_uc001rad.2_Missense_Mutation_p.E144K|BCL2L14_uc001rae.2_Missense_Mutation_p.E144K	NM_138723	NP_620049	Q9BZR8	B2L14_HUMAN	BCL2-like 14 isoform 1	144					apoptosis|regulation of apoptosis	cytosol|endomembrane system|intracellular organelle|membrane	protein binding			skin(1)	1		Prostate(47;0.0872)		BRCA - Breast invasive adenocarcinoma(232;0.154)		CTTGGAGCATGAAGGTAGGCA	0.493													28	50					0	0	0.001512	0	0
MANSC1	54682	broad.mit.edu	37	12	12483157	12483157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:12483157G>A	uc001rai.1	-	4	1358	c.1100C>T	c.(1099-1101)TCC>TTC	p.S367F	MANSC1_uc010shm.1_Missense_Mutation_p.S301F|MANSC1_uc001raj.1_Missense_Mutation_p.S333F|MANSC1_uc009zht.1_Missense_Mutation_p.S286F	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	367	Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		GCCCTGGGAGGAACTGCCTGG	0.483													19	30					0	0	0.000743	0	0
GPR19	2842	broad.mit.edu	37	12	12814241	12814241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:12814241G>A	uc001rar.3	-	2	1335	c.1142C>T	c.(1141-1143)GCC>GTC	p.A381V	GPR19_uc001raq.2_Missense_Mutation_p.A381V	NM_006143	NP_006134	Q15760	GPR19_HUMAN	G protein-coupled receptor 19	381	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		AATAGTTTTGGCCATGGAAGG	0.388													54	62					0	0	0.003610	0	0
EMP1	2012	broad.mit.edu	37	12	13366658	13366658	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:13366658C>T	uc001rbr.2	+	4	466	c.219C>T	c.(217-219)ATC>ATT	p.I73I	EMP1_uc009zhy.2_Silent_p.I6I|EMP1_uc010shr.1_Silent_p.I73I	NM_001423	NP_001414	P54849	EMP1_HUMAN	epithelial membrane protein 1	73	Helical; (Potential).				cell growth|cell proliferation|epidermis development	integral to membrane|membrane fraction					0		Prostate(47;0.194)		BRCA - Breast invasive adenocarcinoma(232;0.153)		TCTCTATCATCTTCTGTGTCA	0.537													52	80					0	0	0.003610	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716769	13716769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:13716769C>T	uc001rbt.2	-	13	3582	c.3403G>A	c.(3403-3405)GAC>AAC	p.D1135N		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1135	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGGAACTGGTCCAGGTAGAAG	0.592													13	23					0	0	0.002450	0	0
PLBD1	79887	broad.mit.edu	37	12	14659889	14659889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:14659889C>T	uc001rcc.1	-	9	1511	c.1350G>A	c.(1348-1350)ATG>ATA	p.M450I		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	450					lipid catabolic process	extracellular region	hydrolase activity				0						TGATATATTTCATGGATGCCG	0.398													37	67					0	0	0.001485	0	0
ARHGDIB	397	broad.mit.edu	37	12	15103629	15103629	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:15103629T>C	uc001rcq.1	-	2	122	c.18A>G	c.(16-18)CCA>CCG	p.P6P	ARHGDIB_uc001rcp.1_5'Flank	NM_001175	NP_001166	P52566	GDIR2_HUMAN	Rho GDP dissociation inhibitor (GDI) beta	6					actin cytoskeleton organization|cellular component movement|immune response|multicellular organismal development|negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytoskeleton|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity				0						CATGTGGCTCTGGGGCTTTTT	0.458													5	64					0	0	0.001168	0	0
PTPRO	5800	broad.mit.edu	37	12	15734657	15734657	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:15734657C>T	uc001rcv.1	+	23	3351	c.3177C>T	c.(3175-3177)GCC>GCT	p.A1059A	PTPRO_uc001rcw.1_Silent_p.A1031A|PTPRO_uc001rcx.1_Silent_p.A248A|PTPRO_uc001rcy.1_Silent_p.A248A|PTPRO_uc001rcz.1_Silent_p.A220A|PTPRO_uc001rda.1_Silent_p.A220A	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	1059	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				AACCTATAGCCTATGGAGACA	0.448													28	31					0	0	0.001271	0	0
LMO3	55885	broad.mit.edu	37	12	16704197	16704197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:16704197C>T	uc001rdk.1	-	4	837	c.397G>A	c.(397-399)GAA>AAA	p.E133K	LMO3_uc001rdj.1_Missense_Mutation_p.E144K|LMO3_uc010shy.1_Missense_Mutation_p.E151K|LMO3_uc001rdl.1_Missense_Mutation_p.E133K|LMO3_uc009zii.1_RNA|LMO3_uc010shz.1_Missense_Mutation_p.E155K|LMO3_uc001rdm.1_Missense_Mutation_p.E133K|LMO3_uc001rdo.1_RNA|LMO3_uc001rdp.1_RNA|LMO3_uc001rdn.1_Missense_Mutation_p.E133K|LMO3_uc009zij.1_RNA|LMO3_uc009zik.1_RNA	NM_018640	NP_061110	Q8TAP4	LMO3_HUMAN	LIM domain only 3	133	LIM zinc-binding 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding				0		Hepatocellular(102;0.244)				ATTAAACCTTCCTCGTAGTCC	0.348													22	57					0	0	0.005443	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18644459	18644459	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:18644459C>T	uc001rdt.2	+	19	2753	c.2637C>T	c.(2635-2637)AAC>AAT	p.N879N	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.N920N|PIK3C2G_uc010sic.1_Silent_p.N698N	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	879					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TTCCTCTGAACCCTGCCCTAT	0.333													42	71					0	0	0.002852	0	0
PLCZ1	89869	broad.mit.edu	37	12	18849175	18849175	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:18849175C>T	uc010sid.1	-	11	1391	c.1200G>A	c.(1198-1200)AGG>AGA	p.R400R	PLCZ1_uc001rdv.3_Silent_p.R296R|PLCZ1_uc001rdw.3_Silent_p.R141R|PLCZ1_uc001rdu.1_Silent_p.R182R|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	400	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					TAATGAACTTCCTGGTGTGAA	0.274													13	16					0	0	0.004007	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891226	18891226	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:18891226G>A	uc001rdy.2	+	1	182	c.24G>A	c.(22-24)AGG>AGA	p.R8R	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	8					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				TGCTGAGCAGGAAGGACAAGG	0.433													25	55					0	0	0.004656	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21028176	21028176	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:21028176C>T	uc001rek.2	+	8	861	c.735C>T	c.(733-735)ATC>ATT	p.I245I	SLCO1B3_uc001rel.2_Silent_p.I245I|SLCO1B3_uc010sil.1_Silent_p.I245I|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.I70I	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	245	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TAGGCACTATCAGAATAACTC	0.383													55	102					0	0	0.003610	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21375290	21375290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:21375290G>A	uc001req.3	+	13	1843	c.1739G>A	c.(1738-1740)CGA>CAA	p.R580Q		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	580	Helical; Name=11; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	ATGGTTATACGAGCACTAGGT	0.199													36	37					0	0	0.004289	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21428330	21428330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:21428330C>T	uc001rer.2	-	12	1890	c.1639G>A	c.(1639-1641)GGT>AGT	p.G547S	SLCO1A2_uc001res.2_Missense_Mutation_p.G547S|SLCO1A2_uc010siq.1_Missense_Mutation_p.G415S|SLCO1A2_uc010sio.1_Missense_Mutation_p.G415S|SLCO1A2_uc010sip.1_Missense_Mutation_p.G415S|SLCO1A2_uc001ret.2_Missense_Mutation_p.G545S	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	547	Helical; Name=11; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						AATCCCACACCAAGGGACTTC	0.259													4	15					0	0	0.001168	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21457497	21457497	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:21457497C>T	uc001rer.2	-	5	704	c.453G>A	c.(451-453)AAG>AAA	p.K151K	SLCO1A2_uc001res.2_Silent_p.K151K|SLCO1A2_uc010siq.1_Silent_p.K19K|SLCO1A2_uc010sio.1_Silent_p.K19K|SLCO1A2_uc010sip.1_Silent_p.K19K|SLCO1A2_uc001ret.2_Silent_p.K149K|SLCO1A2_uc001reu.2_Silent_p.K131K	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	151	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						ATTTAACTTCCTTTGTACACT	0.358													21	54					0	0	0.002299	0	0
GYS2	2998	broad.mit.edu	37	12	21712032	21712032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:21712032G>A	uc001rfb.2	-	10	1556	c.1301C>T	c.(1300-1302)TCA>TTA	p.S434L		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	434					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TACCTGAGTTGAAAAGATGGC	0.308													15	29					0	0	0.004007	0	0
ABCC9	10060	broad.mit.edu	37	12	21965021	21965021	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:21965021G>A	uc001rfi.1	-	34	4193	c.4173C>T	c.(4171-4173)ATC>ATT	p.I1391I	ABCC9_uc001rfh.2_Silent_p.I1391I|ABCC9_uc001rfj.1_Silent_p.I1355I	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1391	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CCTGCAGAATGATTGAAAGTC	0.383													37	58					0	0	0.004878	0	0
ABCC9	10060	broad.mit.edu	37	12	21998657	21998657	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:21998657G>A	uc001rfi.1	-	24	2996	c.2976C>T	c.(2974-2976)TTC>TTT	p.F992F	ABCC9_uc001rfh.2_Silent_p.F992F|ABCC9_uc001rfj.1_Silent_p.F956F	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	992	Helical; Name=12; (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GGATGAGCAGGAAGAATCCTC	0.448													22	34					0	0	0.001882	0	0
ABCC9	10060	broad.mit.edu	37	12	21998764	21998764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:21998764C>T	uc001rfi.1	-	24	2889	c.2869G>A	c.(2869-2871)GAA>AAA	p.E957K	ABCC9_uc001rfh.2_Missense_Mutation_p.E957K|ABCC9_uc001rfj.1_Missense_Mutation_p.E921K	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	957	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCCTCTTCTTCCTCTACATAC	0.388													13	31					0	0	0.001368	0	0
ABCC9	10060	broad.mit.edu	37	12	22005388	22005388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:22005388C>T	uc001rfi.1	-	21	2577	c.2557G>A	c.(2557-2559)GAG>AAG	p.E853K	ABCC9_uc001rfh.2_Missense_Mutation_p.E853K|ABCC9_uc001rfj.1_Missense_Mutation_p.E817K	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	853	Cytoplasmic (Potential).|ABC transporter 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AAAATCCCCTCCTGCATTAAA	0.408													35	40					0	0	0.003755	0	0
BCAT1	586	broad.mit.edu	37	12	24985736	24985736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:24985736C>T	uc001rgd.3	-	9	1407	c.965G>A	c.(964-966)GGG>GAG	p.G322E	BCAT1_uc001rgc.2_Missense_Mutation_p.G321E|BCAT1_uc010six.1_Missense_Mutation_p.G334E|BCAT1_uc010siy.1_Missense_Mutation_p.G285E|BCAT1_uc001rge.3_Missense_Mutation_p.G261E	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	322					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	CACTCTGTTCCCCTCCAGGGC	0.423													11	6					0	0	0.000978	0	0
PTHLH	5744	broad.mit.edu	37	12	28116412	28116412	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:28116412C>T	uc001rik.2	-	3	696	c.393G>A	c.(391-393)GGG>GGA	p.G131G	PTHLH_uc001ril.2_Silent_p.G131G|PTHLH_uc001rim.2_Silent_p.G131G|PTHLH_uc001rin.2_Silent_p.G131G	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	131					activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					CCTTGCGTTTCCCGGGCTTGC	0.522													27	48					0	0	0.001271	0	0
PTHLH	5744	broad.mit.edu	37	12	28116681	28116681	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:28116681G>A	uc001rik.2	-	3	427	c.124C>T	c.(124-126)CAG>TAG	p.Q42*	PTHLH_uc001ril.2_Nonsense_Mutation_p.Q42*|PTHLH_uc001rim.2_Nonsense_Mutation_p.Q42*|PTHLH_uc001rin.2_Nonsense_Mutation_p.Q42*	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	42					activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					TGGAGGAGCTGATGTTCAGAC	0.408													45	66					0	0	0.003610	0	0
TMTC1	83857	broad.mit.edu	37	12	29725121	29725121	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:29725121G>A	uc001rjb.2	-	9	1599	c.1125C>T	c.(1123-1125)GCC>GCT	p.A375A	TMTC1_uc001riz.2_Silent_p.A132A|TMTC1_uc001rja.2_Silent_p.A219A|TMTC1_uc001rjc.1_Silent_p.A437A	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	483	TPR 1.					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					AGTGAACCTTGGCATTGTGGG	0.388													27	38					0	0	0.002096	0	0
FAM60A	58516	broad.mit.edu	37	12	31451024	31451024	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:31451024G>A	uc010sjz.1	-	2	354	c.115C>T	c.(115-117)CAG>TAG	p.Q39*	FAM60A_uc001rkd.2_Nonsense_Mutation_p.Q39*|FAM60A_uc010ska.1_Nonsense_Mutation_p.Q39*|FAM60A_uc001rke.2_Nonsense_Mutation_p.Q39*|FAM60A_uc010skb.1_Intron|FAM60A_uc001rkc.2_Nonsense_Mutation_p.Q64*	NM_021238	NP_067061	Q9NP50	FA60A_HUMAN	family with sequence similarity 60, member A	39											0	all_cancers(9;5.22e-13)|all_epithelial(9;4e-13)|all_lung(12;1.2e-11)|Lung NSC(12;2.17e-09)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0207)|Lung SC(12;0.0592)|Esophageal squamous(101;0.162)					AAACAGCTCTGGAAGTCCTTT	0.403													41	56					0	0	0.003610	0	0
C12orf35	55196	broad.mit.edu	37	12	32136638	32136638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:32136638C>T	uc001rks.2	+	4	3163	c.2749C>T	c.(2749-2751)CCC>TCC	p.P917S		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	917										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			CAGCTCTCTTCCCTTGAAAAT	0.378													21	26					0	0	0.001216	0	0
PKP2	5318	broad.mit.edu	37	12	32949219	32949219	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:32949219G>A	uc001rlj.3	-	12	2428	c.2313C>T	c.(2311-2313)CTC>CTT	p.L771L	PKP2_uc001rlk.3_Silent_p.L727L|PKP2_uc010skj.1_Silent_p.L724L	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	771	ARM 7.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CCAAATCAGGGAGAGTTTCTT	0.358													10	19					0	0	0.000673	0	0
PKP2	5318	broad.mit.edu	37	12	32955374	32955374	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:32955374C>T	uc001rlj.3	-	11	2377	c.2262G>A	c.(2260-2262)AGG>AGA	p.R754R	PKP2_uc001rlk.3_Silent_p.R710R|PKP2_uc010skj.1_Silent_p.R707R	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	754	ARM 6.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GGGACAGATTCCTCAGCAGCG	0.448													50	93					0	0	0.003610	0	0
ABCD2	225	broad.mit.edu	37	12	39980074	39980074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:39980074G>A	uc001rmb.2	-	7	2098	c.1672C>T	c.(1672-1674)CGG>TGG	p.R558W		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	558	ABC transporter.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding	p.R558R(1)		ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						ACTTGATCCCGAAGACTTCCA	0.398													30	41					0	0	0.002096	0	0
LRRK2	120892	broad.mit.edu	37	12	40714883	40714883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:40714883C>T	uc001rmg.3	+	35	5184	c.5063C>T	c.(5062-5064)TCT>TTT	p.S1688F	LRRK2_uc009zjw.2_Missense_Mutation_p.S526F|LRRK2_uc001rmi.2_Missense_Mutation_p.S521F	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1688					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TGTGAGAACTCTGAAATTATC	0.393													43	61					0	0	0.003610	0	0
CNTN1	1272	broad.mit.edu	37	12	41316077	41316077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:41316077G>A	uc001rmm.1	+	5	360	c.247G>A	c.(247-249)GAC>AAC	p.D83N	CNTN1_uc009zjy.1_Missense_Mutation_p.D83N|CNTN1_uc001rmn.1_Missense_Mutation_p.D72N|CNTN1_uc001rmo.2_Missense_Mutation_p.D83N	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	83	Ig-like C2-type 1.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GAATAATGGGGACGTTGATCT	0.388													22	20					0	0	0.004656	0	0
CNTN1	1272	broad.mit.edu	37	12	41333159	41333159	+	Missense_Mutation	SNP	G	A	A	rs145510600	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:41333159G>A	uc001rmm.1	+	12	1364	c.1251G>A	c.(1249-1251)ATG>ATA	p.M417I	CNTN1_uc009zjy.1_Missense_Mutation_p.M417I|CNTN1_uc001rmn.1_Missense_Mutation_p.M406I|CNTN1_uc001rmo.2_Missense_Mutation_p.M417I	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	417	Ig-like C2-type 5.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CTTTTGAAATGAATCCTATGA	0.358													12	26					0	0	0.003163	0	0
CNTN1	1272	broad.mit.edu	37	12	41410657	41410657	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:41410657C>T	uc001rmm.1	+	19	2471	c.2358C>T	c.(2356-2358)GCC>GCT	p.A786A	CNTN1_uc001rmn.1_Silent_p.A775A	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	786	Fibronectin type-III 2.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AAGTCAAGGCCTTCAACAACA	0.428													19	32					0	0	0.000958	0	0
PDZRN4	29951	broad.mit.edu	37	12	41957445	41957445	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:41957445G>A	uc010skn.1	+	8	932	c.864G>A	c.(862-864)GAG>GAA	p.E288E	PDZRN4_uc001rmq.3_Silent_p.E229E|PDZRN4_uc009zjz.2_Silent_p.E227E|PDZRN4_uc001rmr.2_Silent_p.E114E	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	487							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				CAAGGCCAGAGATTCAGGTCA	0.393													26	30					0	0	0.001786	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43858522	43858522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:43858522C>T	uc010skx.1	-	10	1381	c.1381G>A	c.(1381-1383)GAA>AAA	p.E461K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	461	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AGAAGACATTCCCCGTAACCA	0.363													14	28					0	0	0.003163	0	0
DBX2	440097	broad.mit.edu	37	12	45410113	45410113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:45410113C>T	uc001rok.1	-	4	1148	c.976G>A	c.(976-978)GAA>AAA	p.E326K		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	326						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		GCTTCTTCTTCAGAACATAAA	0.448													22	37					0	0	0.002299	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45459033	45459033	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:45459033C>T	uc001rol.2	-	1		c.162G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CAAAGTCCTTCACCAACTGGA	0.443													6	15					0	0	0.001168	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46321886	46321886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:46321886G>A	uc001rox.2	-	11	1885	c.1598C>T	c.(1597-1599)TCA>TTA	p.S533L	SFRS2IP_uc001row.2_Missense_Mutation_p.S218L|SFRS2IP_uc001roy.1_Missense_Mutation_p.S607L	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	533					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		CTCTGATTGTGAAAGTCCAGA	0.353													44	61					0	0	0.002222	0	0
SLC38A1	81539	broad.mit.edu	37	12	46601385	46601385	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:46601385C>T	uc001rpa.2	-	7	666	c.408G>A	c.(406-408)AAG>AAA	p.K136K	SLC38A1_uc001rpb.2_Silent_p.K136K|SLC38A1_uc001rpc.2_Silent_p.K136K|SLC38A1_uc001rpd.2_Silent_p.K136K|SLC38A1_uc001rpe.2_Silent_p.K136K|SLC38A1_uc010slh.1_Silent_p.K109K|SLC38A1_uc009zkj.1_Silent_p.K136K	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	136	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			GTTCCCCCAGCTTTTCATACA	0.378													33	67					0	0	0.005524	0	0
FAM113B	91523	broad.mit.edu	37	12	47629002	47629002	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:47629002G>A	uc001rpn.2	+	4	887	c.156G>A	c.(154-156)GGG>GGA	p.G52G	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Silent_p.G52G	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	52							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					GAGCAAGGGGGGAGCTGAACT	0.612													15	22					0	0	0.003163	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48135321	48135321	+	Silent	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:48135321G>C	uc009zkp.2	-	18	2204	c.1764C>G	c.(1762-1764)CTC>CTG	p.L588L	uc001rpv.2_RNA|RAPGEF3_uc001rpw.2_5'UTR|RAPGEF3_uc001rpx.2_Silent_p.L45L|RAPGEF3_uc010sln.1_Silent_p.L103L|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Silent_p.L588L|RAPGEF3_uc001rpz.3_Silent_p.L630L	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	588					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		TGACAACAAAGAGACGCTCAT	0.592													18	44					0	0	0.001882	0	0
COL2A1	1280	broad.mit.edu	37	12	48377917	48377917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:48377917G>A	uc001rqu.2	-	29	2075	c.1894C>T	c.(1894-1896)CCT>TCT	p.P632S	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.P563S	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	632	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TCTTTGCCAGGAAGACCCTAG	0.582													9	14					0	0	0.000673	0	0
OR8S1	341568	broad.mit.edu	37	12	48920047	48920047	+	Silent	SNP	C	T	T	rs139022158	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:48920047C>T	uc010slu.1	+	1	633	c.633C>T	c.(631-633)TTC>TTT	p.F211F		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F211F(1)		skin(1)	1						TGGGAAACTTCCTTTTGGTCT	0.537													22	30					0	0	0.002780	0	0
LALBA	3906	broad.mit.edu	37	12	48963728	48963728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:48963728C>T	uc001rrt.2	-	1	102	c.76G>A	c.(76-78)GAG>AAG	p.E26K		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	26					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						TGGGACAGCTCACATTTTGTG	0.498													16	24					0	0	0.000743	0	0
MLL2	8085	broad.mit.edu	37	12	49426047	49426047	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:49426047G>A	uc001rta.3	-	39	12441	c.12441C>T	c.(12439-12441)TCC>TCT	p.S4147S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4147	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCTGGGTCATGGACCCAGGCT	0.587			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			11	19					0	0	0.001368	0	0
MLL2	8085	broad.mit.edu	37	12	49444331	49444331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:49444331G>A	uc001rta.3	-	11	3040	c.3040C>T	c.(3040-3042)CCC>TCC	p.P1014S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1014	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ATCAGGATGGGAGAAGCCGGC	0.617			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			21	12					0	0	0.003954	0	0
KCNH3	23416	broad.mit.edu	37	12	49938131	49938131	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:49938131G>A	uc001ruh.1	+	7	1415	c.1155G>A	c.(1153-1155)GAG>GAA	p.E385E	KCNH3_uc010smj.1_Silent_p.E325E	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	385	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						GCCAGCGGGAGATCGAGAGCA	0.617													5	13					0	0	0.001984	0	0
MCRS1	10445	broad.mit.edu	37	12	49958316	49958316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:49958316G>A	uc001ruk.1	-	6	696	c.505C>T	c.(505-507)CGG>TGG	p.R169W	MCRS1_uc001rui.1_Missense_Mutation_p.R182W|MCRS1_uc001ruj.1_Missense_Mutation_p.R156W|MCRS1_uc001rul.1_Missense_Mutation_p.R169W|MCRS1_uc009zlj.1_5'UTR|MCRS1_uc001rum.1_Missense_Mutation_p.R156W|MCRS1_uc001run.1_Missense_Mutation_p.R169W	NM_006337	NP_006328	Q96EZ8	MCRS1_HUMAN	microspherule protein 1 isoform 1	169					DNA recombination|DNA repair|protein modification process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex|MLL1 complex|nucleolus	protein binding			large_intestine(1)	1						TGGACCTCCCGAAGGGTGAAG	0.602													4	7					0	0	0.000248	0	0
LETMD1	25875	broad.mit.edu	37	12	51442931	51442931	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:51442931C>T	uc001rxm.2	+	2	293	c.237C>T	c.(235-237)TTC>TTT	p.F79F	LETMD1_uc010smz.1_Silent_p.F79F|LETMD1_uc010sna.1_Silent_p.F79F|LETMD1_uc001rxl.2_Silent_p.F23F|LETMD1_uc009zlv.2_RNA|LETMD1_uc001rxs.2_Silent_p.F79F|LETMD1_uc009zlw.2_Silent_p.F79F|LETMD1_uc001rxn.2_5'UTR|LETMD1_uc001rxo.2_RNA|LETMD1_uc001rxp.2_Intron|LETMD1_uc001rxq.2_Silent_p.F79F|LETMD1_uc001rxr.2_RNA|LETMD1_uc001rxt.2_5'UTR	NM_015416	NP_056231	Q6P1Q0	LTMD1_HUMAN	LETM1 domain containing 1 isoform 1	79	Cytoplasmic (Potential).|LETM1.|Required and sufficient for mitochondrial import.					integral to membrane|mitochondrial outer membrane	protein binding			central_nervous_system(2)	2						GTCGTCATTTCCCCCGCTTCT	0.418													27	34					0	0	0.001512	0	0
CSRNP2	81566	broad.mit.edu	37	12	51457690	51457691	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:51457690_51457691GG>AA	uc001rxu.1	-	5	1768_1769	c.1470_1471CC>TT	c.(1468-1473)AACCCT>AATTCT	p.P491S		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	491					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GGCTCCTCAGGGTTACAATCTT	0.559													31	66					0	0	0.004672	0	0
BIN2	51411	broad.mit.edu	37	12	51685803	51685803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:51685803G>A	uc001ryg.2	-	10	1139	c.1087C>T	c.(1087-1089)CCC>TCC	p.P363S	BIN2_uc009zlz.2_Missense_Mutation_p.P331S|BIN2_uc001ryh.2_Missense_Mutation_p.P239S|BIN2_uc010sng.1_Missense_Mutation_p.P337S	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	363						cytoplasm	protein binding			ovary(1)	1						GTGGAGCTGGGGAGAACTTCC	0.617													21	22					0	0	0.002780	0	0
GALNT6	11226	broad.mit.edu	37	12	51773391	51773391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:51773391C>T	uc001ryk.2	-	2	400	c.175G>A	c.(175-177)GAG>AAG	p.E59K	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.E59K|GALNT6_uc010snh.1_Missense_Mutation_p.E59K	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	59	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						TTCATGGCCTCCAGCATGAGG	0.572													23	51					0	0	0.003954	0	0
SCN8A	6334	broad.mit.edu	37	12	52096571	52096571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52096571G>A	uc001ryw.2	+	9	1185	c.1007G>A	c.(1006-1008)GGA>GAA	p.G336E	SCN8A_uc010snl.1_Missense_Mutation_p.G201E|SCN8A_uc001ryx.1_Missense_Mutation_p.G201E|SCN8A_uc001ryz.1_Missense_Mutation_p.G201E|SCN8A_uc001ryy.2_Missense_Mutation_p.G201E	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	336	I.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TGCCCAGAGGGATACCAGTGT	0.413													7	9					0	0	0.004482	0	0
SCN8A	6334	broad.mit.edu	37	12	52156407	52156407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52156407G>A	uc001ryw.2	+	15	2669	c.2491G>A	c.(2491-2493)GAA>AAA	p.E831K	SCN8A_uc010snl.1_Missense_Mutation_p.E696K|SCN8A_uc001ryy.2_Missense_Mutation_p.E696K	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	831	Helical; Name=S3 of repeat II; (Potential).|II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	CAGTTTAATGGAACTGAGTCT	0.418													43	65					0	0	0.002222	0	0
ANKRD33	341405	broad.mit.edu	37	12	52284412	52284412	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52284412C>T	uc001rzf.3	+	5	886	c.307C>T	c.(307-309)CTG>TTG	p.L103L	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Silent_p.L228L|ANKRD33_uc001rze.2_Silent_p.L124L|ANKRD33_uc001rzg.3_Silent_p.L30L|ANKRD33_uc001rzi.3_Silent_p.L103L	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	103	ANK 3.										0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		CAAGACGGCCCTGGAATGGGC	0.627													11	13					0	0	0.000978	0	0
ANKRD33	341405	broad.mit.edu	37	12	52285033	52285033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52285033G>A	uc001rzf.3	+	6	1307	c.728G>A	c.(727-729)GGA>GAA	p.G243E	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Missense_Mutation_p.E435K|ANKRD33_uc001rze.2_Missense_Mutation_p.E331K|ANKRD33_uc001rzg.3_Missense_Mutation_p.G170E|ANKRD33_uc001rzi.3_Missense_Mutation_p.G243E	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	243											0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		GCGATACCAGGAGCTCAGGAT	0.577													12	11					0	0	0.000978	0	0
KRT75	9119	broad.mit.edu	37	12	52825840	52825840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52825840C>T	uc001saj.2	-	3	746	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	242	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		TTGTTAATTTCATCTTCGTAC	0.413													10	22					0	0	0.000978	0	0
KRT6C	286887	broad.mit.edu	37	12	52865510	52865510	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52865510C>T	uc001sal.3	-	3	810	c.762G>A	c.(760-762)GAG>GAA	p.E254E		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	254	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		TGATTTCATCCTCATATCTAC	0.423													39	70					0	0	0.003610	0	0
KRT6A	3853	broad.mit.edu	37	12	52881613	52881613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52881613G>A	uc001sam.2	-	9	1795	c.1586C>T	c.(1585-1587)TCC>TTC	p.S529F		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	529	Tail.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCACTGCTGGAACTGAAGCC	0.607													20	27					0	0	0.001216	0	0
KRT71	112802	broad.mit.edu	37	12	52940176	52940176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52940176C>T	uc001sao.2	-	7	1289	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	407	Coil 2.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CGCGCCAGCTCCTCCTTGGCC	0.652													12	22					0	0	0.001368	0	0
KRT74	121391	broad.mit.edu	37	12	52965768	52965768	+	Missense_Mutation	SNP	C	T	T	rs143284700		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:52965768C>T	uc001sap.1	-	3	755	c.707G>A	c.(706-708)CGG>CAG	p.R236Q		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	236	Coil 1B.|Rod.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		TGTCGTGCGCCGGTTAATCTC	0.522													29	77					0	0	0.003610	0	0
KRT1	3848	broad.mit.edu	37	12	53071153	53071153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:53071153C>T	uc001sau.1	-	5	1134	c.1075G>A	c.(1075-1077)GAG>AAG	p.E359K	KRT1_uc001sav.1_Missense_Mutation_p.E359K	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	359	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						GCTATATCCTCGTACTGGGCC	0.507													13	40					0	0	0.001368	0	0
KRT1	3848	broad.mit.edu	37	12	53073659	53073659	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:53073659G>A	uc001sau.1	-	1	533	c.474C>T	c.(472-474)AAC>AAT	p.N158N	KRT1_uc001sav.1_Silent_p.N158N	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	158	Head.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						GAAGGCTCTGGTTGATAGTGA	0.388													19	44					0	0	0.002299	0	0
KRT76	51350	broad.mit.edu	37	12	53169341	53169341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:53169341C>T	uc001sax.2	-	2	700	c.646G>A	c.(646-648)GAA>AAA	p.E216K		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	216	Coil 1A.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						TGGAGCAGTTCCCACTTGGTC	0.552													39	66					0	0	0.001485	0	0
KRT4	3851	broad.mit.edu	37	12	53207852	53207852	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:53207852G>A	uc001saz.2	-	1	484	c.213C>T	c.(211-213)CTC>CTT	p.L71L		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	Error:Variant_position_missing_in_B4DRS2_after_alignment						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						TGGCTGCAGAGAGCGAGCTGG	0.627													20	29					0	0	0.001882	0	0
IGFBP6	3489	broad.mit.edu	37	12	53495889	53495889	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:53495889T>A	uc001sbu.1	+	4	727	c.661T>A	c.(661-663)TCC>ACC	p.S221T	SOAT2_uc001sbv.2_5'Flank|SOAT2_uc009zms.2_5'Flank	NM_002178	NP_002169	P24592	IBP6_HUMAN	insulin-like growth factor binding protein 6	221	Thyroglobulin type-1.				negative regulation of cell proliferation|regulation of cell growth|signal transduction					ovary(1)	1						GATGGGCAAGTCCCTGCCAGG	0.652													18	12					0	0	0.000958	0	0
SP7	121340	broad.mit.edu	37	12	53722505	53722505	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:53722505C>G	uc001sct.2	-	2	828	c.721G>C	c.(721-723)GAA>CAA	p.E241Q	SP7_uc001scu.2_Missense_Mutation_p.E223Q|SP7_uc001scv.2_Missense_Mutation_p.E241Q	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix	241					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCACTCCCTTCTAGCTGCCCA	0.622													18	26					0	0	0.000743	0	0
AMHR2	269	broad.mit.edu	37	12	53825060	53825060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:53825060G>A	uc001scx.1	+	11	1603	c.1525G>A	c.(1525-1527)GCC>ACC	p.A509T	AMHR2_uc009zmy.1_3'UTR	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	509	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	GGCTGCCTTGGCCCATCCTCA	0.597									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				21	20					0	0	0.001882	0	0
HOXC10	3226	broad.mit.edu	37	12	54379160	54379160	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:54379160C>T	uc001sen.2	+	1	215	c.117C>T	c.(115-117)TTC>TTT	p.F39F		NM_017409	NP_059105	Q9NYD6	HXC10_HUMAN	homeobox C10	39					positive regulation of cell proliferation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1						GGAGTGACTTCAATTGCGGGG	0.647													28	16					0	0	0.001061	0	0
HOXC6	3223	broad.mit.edu	37	12	54423580	54423580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:54423580C>T	uc001sev.2	+	2	654	c.542C>T	c.(541-543)ACC>ATC	p.T181I	HOXC6_uc001ses.2_Missense_Mutation_p.T99I|HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron	NM_004503	NP_004494	P09630	HXC6_HUMAN	homeobox C6 isoform 1	181	Homeobox.				regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CTTTGCCTGACCGAGCGACAG	0.572													31	48					0	0	0.004878	0	0
PDE1B	5153	broad.mit.edu	37	12	54968957	54968957	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:54968957C>T	uc001sgd.1	+	11	1306	c.1140C>T	c.(1138-1140)GTC>GTT	p.V380V	PDE1B_uc010soz.1_Silent_p.V243V|PDE1B_uc010spa.1_Silent_p.V339V|PDE1B_uc001sgf.2_Silent_p.V243V|PDE1B_uc001sge.2_Silent_p.V360V|PDE1B_uc009znq.2_Silent_p.V176V	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	380	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGTGGTTGGTCCACAGCCGTT	0.577													24	46					0	0	0.004656	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420266	55420266	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55420266G>C	uc001sgp.3	+	2	421	c.43G>C	c.(43-45)GTC>CTC	p.V15L		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	15					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						GGGAGAGCTAGTCAACACACC	0.433													18	28					0	0	0.001882	0	0
OR9K2	441639	broad.mit.edu	37	12	55524229	55524229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55524229C>T	uc010spe.1	+	1	677	c.677C>T	c.(676-678)TCC>TTC	p.S226F		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	226	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						ATATCTTTTTCCTTATCATGT	0.363													29	25					0	0	0.001061	0	0
OR10A7	121364	broad.mit.edu	37	12	55615096	55615096	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55615096C>T	uc010spf.1	+	1	288	c.288C>T	c.(286-288)GGC>GGT	p.G96G		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						CTTTTGTGGGCTGTGGTACCC	0.418													53	82					0	0	0.003610	0	0
OR6C3	254786	broad.mit.edu	37	12	55726216	55726216	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55726216C>T	uc010spj.1	+	1	732	c.732C>T	c.(730-732)GTC>GTT	p.V244V		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACATGATTGTCATTTCCATTT	0.353													21	34					0	0	0.001523	0	0
OR6C76	390326	broad.mit.edu	37	12	55820949	55820949	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55820949G>A	uc010spm.1	+	1	912	c.912G>A	c.(910-912)AAG>AAA	p.K304K		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCTGAGAAAGATTTCCCACA	0.328													15	15					0	0	0.000743	0	0
OR6C2	341416	broad.mit.edu	37	12	55846192	55846192	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55846192C>T	uc001sgz.1	+	1	195	c.195C>T	c.(193-195)TCC>TCT	p.S65S		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GAAATTTTTCCTTCTTAGAAG	0.398													33	50					0	0	0.003271	0	0
OR6C2	341416	broad.mit.edu	37	12	55846641	55846641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55846641C>T	uc001sgz.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GTGATTCTGTCCTACTTGTAC	0.393													35	76					0	0	0.004878	0	0
OR6C4	341418	broad.mit.edu	37	12	55945717	55945717	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55945717T>A	uc010spp.1	+	1	707	c.707T>A	c.(706-708)TTT>TAT	p.F236Y		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	236	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACAAAGGCCTTTTCCACTTGT	0.448													34	31					0	0	0.001485	0	0
OR6C4	341418	broad.mit.edu	37	12	55945720	55945721	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:55945720_55945721CC>TT	uc010spp.1	+	1	710_711	c.710_711CC>TT	c.(709-711)TCC>TTT	p.S237F		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	237	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGCCTTTTCCACTTGTTCCT	0.441													21	46					0	0	0.004672	0	0
OR10P1	121130	broad.mit.edu	37	12	56031264	56031264	+	Missense_Mutation	SNP	G	A	A	rs141032808	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:56031264G>A	uc010spq.1	+	1	589	c.589G>A	c.(589-591)GAG>AAG	p.E197K		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GCACAGGAGCGAGATCTCCGT	0.532													35	45					0	0	0.003755	0	0
ESYT1	23344	broad.mit.edu	37	12	56527378	56527378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:56527378C>T	uc001sjq.2	+	12	1350	c.1300C>T	c.(1300-1302)CCT>TCT	p.P434S	ESYT1_uc001sjr.2_Missense_Mutation_p.P434S	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	434						integral to membrane				ovary(4)|skin(1)	5						CTAGTGGTTCCCTCTACAAGG	0.458													22	30					0	0	0.002299	0	0
SLC39A5	283375	broad.mit.edu	37	12	56626551	56626551	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:56626551G>A	uc010sqj.1	+	5	623	c.366G>A	c.(364-366)GAG>GAA	p.E122E	SLC39A5_uc010sqi.1_Silent_p.E13E|SLC39A5_uc010sqk.1_Silent_p.E122E	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	122	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						ACCTGGAAGAGTCAAAGGCCC	0.617													11	31					0	0	0.000673	0	0
APOF	319	broad.mit.edu	37	12	56755841	56755841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:56755841G>A	uc001sle.1	-	2	203	c.149C>T	c.(148-150)CCC>CTC	p.P50L		NM_001638	NP_001629	Q13790	APOF_HUMAN	apolipoprotein F precursor	50					cholesterol metabolic process	high-density lipoprotein particle|low-density lipoprotein particle	cholesterol binding|lipid transporter activity|receptor binding				0						CAAGGACAAGGGAAAGTGCAT	0.522													31	81					0	0	0.003755	0	0
R3HDM2	22864	broad.mit.edu	37	12	57660589	57660589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:57660589G>A	uc009zpm.1	-	17	2049	c.2014C>T	c.(2014-2016)CCT>TCT	p.P672S	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Missense_Mutation_p.P367S|R3HDM2_uc001snr.2_Missense_Mutation_p.P399S|R3HDM2_uc001sns.2_Missense_Mutation_p.P672S|R3HDM2_uc001snt.2_Missense_Mutation_p.P686S|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	672	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						TCAGAGCCAGGGGGTTGCAGA	0.552													8	17					0	0	0.000673	0	0
INHBC	3626	broad.mit.edu	37	12	57828709	57828709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:57828709C>T	uc001snv.1	+	1	167	c.40C>T	c.(40-42)CCA>TCA	p.P14S		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	14					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						CCTCCTGGCTCCAACCACAGT	0.602													9	16					0	0	0.001368	0	0
INHBC	3626	broad.mit.edu	37	12	57843565	57843565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:57843565G>A	uc001snv.1	+	2	946	c.819G>A	c.(817-819)ATG>ATA	p.M273I		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	273					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						GCTACGCCATGAACTTCTGCA	0.542													21	20					0	0	0.001523	0	0
GLI1	2735	broad.mit.edu	37	12	57859013	57859013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:57859013C>T	uc001snx.2	+	5	587	c.509C>T	c.(508-510)TCC>TTC	p.S170F	GLI1_uc009zpq.2_Missense_Mutation_p.S42F	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	170					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CATCCTCAGTCCCGGGGACCC	0.587													9	10					0	0	0.004482	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57867829	57867829	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:57867829G>A	uc001sod.2	-	19	2377	c.2184C>T	c.(2182-2184)GCC>GCT	p.A728A	ARHGAP9_uc001sny.2_Intron|ARHGAP9_uc001snz.2_Silent_p.A454A|ARHGAP9_uc001soa.2_Silent_p.A327A|ARHGAP9_uc001sob.2_Silent_p.A638A|ARHGAP9_uc001soc.2_Silent_p.A638A|ARHGAP9_uc001soe.1_Silent_p.A717A	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	657	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			CCTTACCAAGGGCAGCACGGA	0.537													7	12					0	0	0.001984	0	0
MBD6	114785	broad.mit.edu	37	12	57919882	57919883	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:57919882_57919883AG>GA	uc001soj.1	+	6	1355_1356	c.1131_1132AG>GA	c.(1129-1134)GAAGGG>GAGAGG	p.G378R	MBD6_uc001sok.1_Missense_Mutation_p.G245R|MBD6_uc001sol.1_5'Flank	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	378	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						GATTGCTAGAAGGGAGAGGCCC	0.624													10	21					0	0	0.004672	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57985150	57985150	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:57985150C>T	uc001sou.2	+	1	209	c.78C>T	c.(76-78)TCC>TCT	p.S26S	PIP4K2C_uc001sot.2_Silent_p.S26S|PIP4K2C_uc010srs.1_Silent_p.S26S|PIP4K2C_uc010srt.1_Silent_p.S26S	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	26						cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					GCTTCGCCTCCAAGACCAAGA	0.657													40	46					0	0	0.002522	0	0
IL22	50616	broad.mit.edu	37	12	68647154	68647154	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:68647154G>A	uc001sty.1	-	1	128	c.75C>T	c.(73-75)GCC>GCT	p.A25A	IL22_uc010stb.1_Silent_p.A25A	NM_020525	NP_065386	Q9GZX6	IL22_HUMAN	interleukin 22 precursor	25					acute-phase response	extracellular space	cytokine activity|interleukin-22 receptor binding				0		Myeloproliferative disorder(1001;0.0255)	Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;5.06e-05)|BRCA - Breast invasive adenocarcinoma(357;0.00104)		GTACCAAGAGGGCCAAGAGAA	0.567													19	23					0	0	0.001216	0	0
CPM	1368	broad.mit.edu	37	12	69326512	69326512	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:69326512C>G	uc001sup.2	-	2	167	c.106G>C	c.(106-108)GCC>CCC	p.A36P	CPM_uc001sur.2_Missense_Mutation_p.A36P|CPM_uc001suq.2_Missense_Mutation_p.A36P	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	36					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			TAGTTTTGGGCAACAGTCTTC	0.517													3	71					0	0	0.004672	0	0
CCT2	10576	broad.mit.edu	37	12	69980054	69980054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:69980054C>T	uc001svb.1	+	2	102	c.8C>T	c.(7-9)TCC>TTC	p.S3F	CCT2_uc009zrm.1_RNA|CCT2_uc009zrn.1_Missense_Mutation_p.S3F|CCT2_uc010stl.1_5'UTR	NM_006431	NP_006422	P78371	TCPB_HUMAN	chaperonin containing TCP1, subunit 2	3					'de novo' posttranslational protein folding	nucleus	ATP binding|unfolded protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(2;7.7e-106)|Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.72e-18)|GBM - Glioblastoma multiforme(2;2.58e-10)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			TTTCAGGCGTCCCTTTCCCTT	0.443											OREG0021987	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	57					0	0	0.003954	0	0
PTPRB	5787	broad.mit.edu	37	12	70938397	70938397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:70938397C>T	uc001swb.3	-	20	4810	c.4780G>A	c.(4780-4782)GAA>AAA	p.E1594K	PTPRB_uc010sto.1_Missense_Mutation_p.E1504K|PTPRB_uc010stp.1_Missense_Mutation_p.E1504K|PTPRB_uc001swc.3_Missense_Mutation_p.E1812K|PTPRB_uc001swa.3_Missense_Mutation_p.E1724K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1594	Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTTGTGAATTCCTTCAGGTCC	0.363													19	24					0	0	0.002299	0	0
PTPRB	5787	broad.mit.edu	37	12	70953393	70953393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:70953393G>A	uc001swb.3	-	16	3820	c.3790C>T	c.(3790-3792)CCC>TCC	p.P1264S	PTPRB_uc010sto.1_Missense_Mutation_p.P1174S|PTPRB_uc010stp.1_Missense_Mutation_p.P1174S|PTPRB_uc001swc.3_Missense_Mutation_p.P1482S|PTPRB_uc001swa.3_Missense_Mutation_p.P1394S|PTPRB_uc001swd.3_Missense_Mutation_p.P1481S|PTPRB_uc009zrr.1_Missense_Mutation_p.P1361S	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1264	Fibronectin type-III 15.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ATAAGACTGGGAGGACTTGGA	0.443													16	20					0	0	0.003163	0	0
PTPRB	5787	broad.mit.edu	37	12	70960270	70960270	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:70960270G>A	uc001swb.3	-	13	3225	c.3195C>T	c.(3193-3195)ATC>ATT	p.I1065I	PTPRB_uc010sto.1_Intron|PTPRB_uc010stp.1_Silent_p.I975I|PTPRB_uc001swc.3_Silent_p.I1283I|PTPRB_uc001swa.3_Silent_p.I1195I|PTPRB_uc001swd.3_Silent_p.I1282I|PTPRB_uc009zrr.1_Silent_p.I1162I	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1065	Fibronectin type-III 12.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGACAGTTAGGATCTGTATCT	0.443													20	39					0	0	0.000958	0	0
PTPRB	5787	broad.mit.edu	37	12	70964929	70964929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:70964929G>A	uc001swb.3	-	11	2623	c.2593C>T	c.(2593-2595)CAC>TAC	p.H865Y	PTPRB_uc010sto.1_Missense_Mutation_p.H865Y|PTPRB_uc010stp.1_Missense_Mutation_p.H775Y|PTPRB_uc001swc.3_Missense_Mutation_p.H1083Y|PTPRB_uc001swa.3_Missense_Mutation_p.H995Y|PTPRB_uc001swd.3_Missense_Mutation_p.H1082Y|PTPRB_uc009zrr.1_Missense_Mutation_p.H962Y	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	865	Fibronectin type-III 10.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTTACAAGGTGAAAAGGAGGA	0.458													18	26					0	0	0.000958	0	0
PTPRB	5787	broad.mit.edu	37	12	70988418	70988418	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:70988418G>A	uc001swb.3	-	4	721	c.691C>T	c.(691-693)CGA>TGA	p.R231*	PTPRB_uc010sto.1_Nonsense_Mutation_p.R231*|PTPRB_uc010stp.1_Nonsense_Mutation_p.R231*|PTPRB_uc001swc.3_Nonsense_Mutation_p.R449*|PTPRB_uc001swa.3_Nonsense_Mutation_p.R449*|PTPRB_uc001swd.3_Nonsense_Mutation_p.R448*|PTPRB_uc009zrr.1_Nonsense_Mutation_p.R328*|PTPRB_uc001swe.2_Nonsense_Mutation_p.R449*	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	231	Fibronectin type-III 3.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGCCGGTATCGTTCCACATTC	0.468													16	31					0	0	0.004990	0	0
PTPRR	5801	broad.mit.edu	37	12	71155373	71155373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:71155373G>A	uc001swi.1	-	4	921	c.505C>T	c.(505-507)CCC>TCC	p.P169S	PTPRR_uc010stq.1_Missense_Mutation_p.P57S	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	169	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		CGGTTTATGGGAGACACAAAC	0.328													49	98					0	0	0.003610	0	0
TRHDE	29953	broad.mit.edu	37	12	72680599	72680599	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:72680599G>A	uc001sxa.2	+	2	948	c.918G>A	c.(916-918)GTG>GTA	p.V306V		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	306	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ATATGCCAGTGGAAACTTCCG	0.403													48	75					0	0	0.003610	0	0
TRHDE	29953	broad.mit.edu	37	12	72955960	72955960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:72955960C>T	uc001sxa.2	+	8	1699	c.1669C>T	c.(1669-1671)CAT>TAT	p.H557Y		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	557	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTTAACCATTCATAAGTATGG	0.264													11	18					0	0	0.001368	0	0
KCNC2	3747	broad.mit.edu	37	12	75441937	75441937	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:75441937C>T	uc001sxg.1	-	4	2320	c.1776G>A	c.(1774-1776)AGG>AGA	p.R592R	KCNC2_uc009zry.2_Silent_p.R592R|KCNC2_uc001sxe.2_Silent_p.R592R|KCNC2_uc001sxf.2_Intron|KCNC2_uc010stw.1_Intron	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	592	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						GCCTACCTTTCCTGATCCCTC	0.408													41	72					0	0	0.003610	0	0
OSBPL8	114882	broad.mit.edu	37	12	76791507	76791507	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:76791507G>A	uc001sye.1	-	8	1119	c.639C>T	c.(637-639)TTC>TTT	p.F213F	OSBPL8_uc001syf.1_Silent_p.F171F|OSBPL8_uc001syg.1_Silent_p.F171F|OSBPL8_uc001syh.1_Silent_p.F188F	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	213	PH.				lipid transport		lipid binding			ovary(1)	1						CCAAAGGATGGAAAAGTTTGA	0.378													12	21					0	0	0.001368	0	0
NAV3	89795	broad.mit.edu	37	12	78582525	78582525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:78582525G>A	uc001syp.2	+	33	6196	c.6023G>A	c.(6022-6024)GGA>GAA	p.G2008E	NAV3_uc001syo.2_Missense_Mutation_p.G1986E|NAV3_uc010sub.1_Missense_Mutation_p.G1465E|NAV3_uc009zsf.2_Missense_Mutation_p.G817E	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2008						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TACCTTGTTGGAGATAATAAC	0.408										HNSCC(70;0.22)			42	48					0	0	0.003610	0	0
SYT1	6857	broad.mit.edu	37	12	79693260	79693260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:79693260C>T	uc001sys.2	+	9	1410	c.739C>T	c.(739-741)CCT>TCT	p.P247S	SYT1_uc001syt.2_Missense_Mutation_p.P247S|SYT1_uc001syu.2_Missense_Mutation_p.P244S|SYT1_uc001syv.2_Missense_Mutation_p.P247S	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	247	Cytoplasmic (Potential).|Phospholipid binding (Probable).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						ATTTAAAGTCCCTATGAACAC	0.418													32	37					0	0	0.001512	0	0
SYT1	6857	broad.mit.edu	37	12	79693272	79693272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:79693272G>A	uc001sys.2	+	9	1422	c.751G>A	c.(751-753)GTG>ATG	p.V251M	SYT1_uc001syt.2_Missense_Mutation_p.V251M|SYT1_uc001syu.2_Missense_Mutation_p.V248M|SYT1_uc001syv.2_Missense_Mutation_p.V251M	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	251	Cytoplasmic (Potential).|Phospholipid binding (Probable).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						TATGAACACAGTGGATTTTGG	0.423													25	31					0	0	0.003330	0	0
SYT1	6857	broad.mit.edu	37	12	79693274	79693274	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:79693274G>A	uc001sys.2	+	9	1424	c.753G>A	c.(751-753)GTG>GTA	p.V251V	SYT1_uc001syt.2_Silent_p.V251V|SYT1_uc001syu.2_Silent_p.V248V|SYT1_uc001syv.2_Silent_p.V251V	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	251	Cytoplasmic (Potential).|Phospholipid binding (Probable).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						TGAACACAGTGGATTTTGGCC	0.428													23	32					0	0	0.002299	0	0
MYF5	4617	broad.mit.edu	37	12	81112819	81112819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:81112819C>T	uc001szg.2	+	3	892	c.757C>T	c.(757-759)CAT>TAT	p.H253Y		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	253					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						GCTTATCTATCATGTGCTATG	0.478													16	27					0	0	0.004007	0	0
ACSS3	79611	broad.mit.edu	37	12	81532947	81532947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:81532947C>T	uc001szl.1	+	4	774	c.683C>T	c.(682-684)CCT>CTT	p.P228L	ACSS3_uc001szm.1_Missense_Mutation_p.P227L	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	228						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GGCATTGAACCTGGAAGGAGG	0.348													19	25					0	0	0.001882	0	0
ACSS3	79611	broad.mit.edu	37	12	81568669	81568669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:81568669C>T	uc001szl.1	+	8	1292	c.1201C>T	c.(1201-1203)CGT>TGT	p.R401C	ACSS3_uc001szm.1_Missense_Mutation_p.R400C|ACSS3_uc001szn.1_Missense_Mutation_p.R83C	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	401						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TAGAGCAATCCGTCAACAGGA	0.507													19	35					0	0	0.000958	0	0
ACSS3	79611	broad.mit.edu	37	12	81647092	81647092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:81647092C>T	uc001szl.1	+	14	1817	c.1726C>T	c.(1726-1728)CTT>TTT	p.L576F	ACSS3_uc001szm.1_Missense_Mutation_p.L575F|ACSS3_uc001szn.1_Missense_Mutation_p.L258F	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	576						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						ACAGTCAATCCTTTCCCATGG	0.323													94	127					0	0	0.003610	0	0
ACSS3	79611	broad.mit.edu	37	12	81647355	81647355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:81647355G>A	uc001szl.1	+	15	1992	c.1901G>A	c.(1900-1902)CGA>CAA	p.R634Q	ACSS3_uc001szm.1_Missense_Mutation_p.R633Q|ACSS3_uc001szn.1_Missense_Mutation_p.R316Q	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	634						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GCTGCTTTTCGAAATGCAGTG	0.423													34	59					0	0	0.002836	0	0
PPFIA2	8499	broad.mit.edu	37	12	81676811	81676811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:81676811G>A	uc001szo.1	-	26	3157	c.2996C>T	c.(2995-2997)TCT>TTT	p.S999F	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_Intron|PPFIA2_uc009zsh.2_Intron	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	904										ovary(3)|lung(2)|pancreas(1)	6						TCCTTCCTCAGATTCTTTCTG	0.323													19	29					0	0	0.002299	0	0
PPFIA2	8499	broad.mit.edu	37	12	81762949	81762949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:81762949C>T	uc001szo.1	-	12	1452	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	357										ovary(3)|lung(2)|pancreas(1)	6						ATACGTTCTTCAATATTTCCA	0.313													22	22					0	0	0.003330	0	0
SLC6A15	55117	broad.mit.edu	37	12	85264263	85264263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:85264263G>A	uc001szv.2	-	9	1982	c.1489C>T	c.(1489-1491)CTT>TTT	p.L497F	SLC6A15_uc010sul.1_Missense_Mutation_p.L390F|SLC6A15_uc001szw.1_Missense_Mutation_p.L205F	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	497	Helical; Name=9; (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						TCACCAGTAAGAATTTCTTTC	0.368													24	22					0	0	0.004656	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85449912	85449912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:85449912G>A	uc001tac.2	+	8	1452	c.1341G>A	c.(1339-1341)ATG>ATA	p.M447I	LRRIQ1_uc001tab.1_Missense_Mutation_p.M447I|LRRIQ1_uc001taa.1_Missense_Mutation_p.M422I	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	447										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		AATCAAATATGAAAGAAAATG	0.299													45	72					0	0	0.002222	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85450708	85450708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:85450708G>A	uc001tac.2	+	8	2248	c.2137G>A	c.(2137-2139)GAA>AAA	p.E713K	LRRIQ1_uc001tab.1_Missense_Mutation_p.E713K|LRRIQ1_uc001taa.1_Missense_Mutation_p.E688K	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	713										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		AAATATTTCAGAAAAATGCCA	0.388													106	151					0	0	0.003610	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85554394	85554394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:85554394C>T	uc001tac.2	+	24	4835	c.4724C>T	c.(4723-4725)TCC>TTC	p.S1575F		NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1575										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TGTTTAGATTCCACTGTGCGT	0.343													28	38					0	0	0.001786	0	0
RASSF9	9182	broad.mit.edu	37	12	86199212	86199212	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:86199212G>A	uc001taf.1	-	2	915	c.576C>T	c.(574-576)TCC>TCT	p.S192S		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	192					endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						TATGGTCCTGGGAAATGATCA	0.383													62	85					0	0	0.003610	0	0
C12orf50	160419	broad.mit.edu	37	12	88379643	88379643	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:88379643T>C	uc001tam.1	-	11	1278	c.1110A>G	c.(1108-1110)AAA>AAG	p.K370K	C12orf50_uc001tan.2_Silent_p.K385K	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	370										skin(2)|ovary(1)	3						TGAGGTTGGGTTTGGGTTCCC	0.493													23	43					0	0	0.003954	0	0
ATP2B1	490	broad.mit.edu	37	12	90018044	90018044	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:90018044G>A	uc001tbh.2	-	8	1441	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F	ATP2B1_uc001tbg.2_Silent_p.F420F|ATP2B1_uc001tbf.2_Silent_p.F90F	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	420	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						CTCCAATAATGAAGAACTTCA	0.383													18	33					0	0	0.001216	0	0
DCN	1634	broad.mit.edu	37	12	91546958	91546958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:91546958G>A	uc001tbs.2	-	5	755	c.661C>T	c.(661-663)CCT>TCT	p.P221S	DCN_uc001tbo.2_Missense_Mutation_p.P112S|DCN_uc001tbp.2_Missense_Mutation_p.P74S|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Missense_Mutation_p.P221S|DCN_uc001tbu.2_Missense_Mutation_p.P221S	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	221	LRR 7.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						GTAAGGGAAGGAGGAAGACCT	0.343													30	44					0	0	0.001786	0	0
DCN	1634	broad.mit.edu	37	12	91552088	91552088	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:91552088G>A	uc001tbs.2	-	3	617	c.523C>T	c.(523-525)CAG>TAG	p.Q175*	DCN_uc001tbo.2_Intron|DCN_uc001tbp.2_Intron|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Nonsense_Mutation_p.Q175*|DCN_uc001tbu.2_Nonsense_Mutation_p.Q175*	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	175	LRR 5.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						ACAATCATCTGGTTCAGTCCA	0.378													42	70					0	0	0.002522	0	0
DCN	1634	broad.mit.edu	37	12	91558384	91558384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:91558384G>A	uc001tbs.2	-	2	416	c.322C>T	c.(322-324)CAC>TAC	p.H108Y	DCN_uc001tbo.2_Intron|DCN_uc001tbp.2_Intron|DCN_uc001tbq.2_Missense_Mutation_p.H108Y|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Missense_Mutation_p.H108Y|DCN_uc001tbu.2_Missense_Mutation_p.H108Y	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	108	LRR 2.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						GTTCTTACGTGAAGGTTCTTC	0.368													14	27					0	0	0.001855	0	0
DCN	1634	broad.mit.edu	37	12	91572327	91572327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:91572327C>T	uc001tbs.2	-	1	97	c.3G>A	c.(1-3)ATG>ATA	p.M1I	DCN_uc001tbo.2_Missense_Mutation_p.M1I|DCN_uc001tbp.2_Missense_Mutation_p.M1I|DCN_uc001tbq.2_Missense_Mutation_p.M1I|DCN_uc001tbr.2_Missense_Mutation_p.M1I|DCN_uc001tbt.2_Missense_Mutation_p.M1I|DCN_uc001tbu.2_Missense_Mutation_p.M1I	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	1					organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						TAGTGGCCTTCATGATTTATC	0.413											OREG0022021	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	23					0	0	0.003163	0	0
C12orf74	338809	broad.mit.edu	37	12	93100769	93100769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:93100769C>T	uc001tch.1	+	2	592	c.362C>T	c.(361-363)TCA>TTA	p.S121L	C12orf74_uc001tci.2_Missense_Mutation_p.S121L	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	121											0						GCAGCTGACTCACTGGAGCCC	0.552													21	46					0	0	0.002299	0	0
NUDT4	11163	broad.mit.edu	37	12	93793086	93793087	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:93793086_93793087CC>TT	uc001tcm.2	+	5	872_873	c.474_475CC>TT	c.(472-477)TCCCTT>TCTTTT	p.L159F	NUDT4_uc010sup.1_Missense_Mutation_p.L159F|NUDT4_uc001tcn.2_Missense_Mutation_p.L107F|NUDT4_uc010suq.1_Missense_Mutation_p.L108F|NUDT4_uc001tco.2_Missense_Mutation_p.L107F	NM_019094	NP_061967	Q9NZJ9	NUDT4_HUMAN	nudix-type motif 4 isoform alpha	159					calcium-mediated signaling|cyclic nucleotide metabolic process|cyclic-nucleotide-mediated signaling|intracellular transport|regulation of RNA export from nucleus	cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0						CAGTCCCTTCCCTTCCGGATAA	0.475													13	172					0	0	0.004672	0	0
VEZT	55591	broad.mit.edu	37	12	95681522	95681522	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:95681522C>T	uc001tdz.2	+	9	1516	c.1411C>T	c.(1411-1413)CTA>TTA	p.L471L	VEZT_uc009ztb.1_RNA|VEZT_uc009ztc.1_5'UTR|VEZT_uc001tdy.2_RNA	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	471						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						TTATCCCATCCTAGAACAGAA	0.388													4	6					0	0	0.000248	0	0
METAP2	10988	broad.mit.edu	37	12	95879672	95879672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:95879672C>T	uc001tec.2	+	4	477	c.343C>T	c.(343-345)CCT>TCT	p.P115S	METAP2_uc010suv.1_Intron|METAP2_uc009ztd.2_Missense_Mutation_p.P79S|METAP2_uc001ted.2_Missense_Mutation_p.P114S|METAP2_uc001tef.2_Missense_Mutation_p.P92S|METAP2_uc001tee.2_RNA	NM_006838	NP_006829	P50579	AMPM2_HUMAN	methionyl aminopeptidase 2	115					N-terminal protein amino acid modification|peptidyl-methionine modification|protein processing|proteolysis	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0					L-Methionine(DB00134)	TCAAACAGACCCTCCCTCAGT	0.368													65	111					0	0	0.003610	0	0
NTN4	59277	broad.mit.edu	37	12	96063853	96063854	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:96063853_96063854CC>TT	uc001tei.2	-	8	2028	c.1579_splice	c.e8+1	p.V527_splice	NTN4_uc009ztf.2_Intron|NTN4_uc009ztg.2_Splice_Site_p.V490_splice	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor						axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						TTCAGACTCACCATATGAATAT	0.347													7	24					0	0	0.004672	0	0
HAL	3034	broad.mit.edu	37	12	96371830	96371830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:96371830G>A	uc001tem.1	-	18	1843	c.1546C>T	c.(1546-1548)CCC>TCC	p.P516S	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Missense_Mutation_p.P308S|HAL_uc010sux.1_Missense_Mutation_p.P516S	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	516					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	ACAGACGAGGGATGGCACAGA	0.572													7	22					0	0	0.003080	0	0
C12orf63	374467	broad.mit.edu	37	12	97073425	97073425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:97073425G>A	uc001tet.1	+	7	964	c.886G>A	c.(886-888)GAC>AAC	p.D296N		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	296										skin(6)|ovary(1)	7						GGACGTGACAGACACCTTGAG	0.458													46	69					0	0	0.003214	0	0
C12orf63	374467	broad.mit.edu	37	12	97078477	97078477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:97078477C>T	uc001tet.1	+	8	1121	c.1043C>T	c.(1042-1044)TCA>TTA	p.S348L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	348										skin(6)|ovary(1)	7						GCGTTGCATTCACTTGGAAGT	0.333													54	83					0	0	0.003610	0	0
C12orf63	374467	broad.mit.edu	37	12	97084957	97084957	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:97084957C>T	uc001tet.1	+	11	1486	c.1408C>T	c.(1408-1410)CAA>TAA	p.Q470*		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	470										skin(6)|ovary(1)	7						TTGCTATGCTCAATATGAAAT	0.373													39	59					0	0	0.002522	0	0
FAM71C	196472	broad.mit.edu	37	12	100042316	100042316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:100042316C>T	uc001tgn.2	+	1	786	c.364C>T	c.(364-366)CCC>TCC	p.P122S	ANKS1B_uc001tge.1_Intron|ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Intron	NM_153364	NP_699195	Q8NEG0	FA71C_HUMAN	hypothetical protein LOC196472	122											0				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		CAGGCTGCTTCCCTTGATGTT	0.517													24	46					0	0	0.003330	0	0
SLC17A8	246213	broad.mit.edu	37	12	100796200	100796200	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:100796200G>A	uc010svi.1	+	7	1159	c.846G>A	c.(844-846)GAG>GAA	p.E282E	SLC17A8_uc009ztx.2_Silent_p.E282E	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	282	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TATCCAATGAGGAGAAGACCT	0.408													15	33					0	0	0.003163	0	0
GAS2L3	283431	broad.mit.edu	37	12	101012316	101012316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:101012316C>T	uc001thu.2	+	8	825	c.599C>T	c.(598-600)TCC>TTC	p.S200F	GAS2L3_uc009zty.2_Missense_Mutation_p.S200F|GAS2L3_uc001thv.2_Missense_Mutation_p.S96F	NM_174942	NP_777602	Q86XJ1	GA2L3_HUMAN	growth arrest-specific 2 like 3	200					cell cycle arrest					skin(1)	1						CCTGAAGATTCCATCAGCATT	0.408													31	41					0	0	0.002096	0	0
ANO4	121601	broad.mit.edu	37	12	101436175	101436176	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:101436175_101436176CT>TA	uc010svm.1	+	12	1655_1656	c.1083_1084CT>TA	c.(1081-1086)CTCTTC>CTTATC	p.F362I	ANO4_uc001thw.2_Missense_Mutation_p.F327I|ANO4_uc001thx.2_Missense_Mutation_p.F362I	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	362	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						CCGGCATGCTCTTCCCAGCTGC	0.49										HNSCC(74;0.22)			22	37					0	0	0.004672	0	0
SLC5A8	160728	broad.mit.edu	37	12	101588903	101588903	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:101588903C>T	uc001thz.3	-	4	897	c.507G>A	c.(505-507)ACG>ACA	p.T169T		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	169	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						AGACCACCCCCGTTGCCACTA	0.403													10	19					0	0	0.000673	0	0
UTP20	27340	broad.mit.edu	37	12	101711290	101711290	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:101711290C>A	uc001tia.1	+	22	2743	c.2587C>A	c.(2587-2589)CCA>ACA	p.P863T		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	863					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						GCAAGTTGCTCCAACCCAGGA	0.493													22	29					5.35356e-11	9.26573e-11	0.002780	1	0
PMCH	5367	broad.mit.edu	37	12	102590870	102590870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:102590870C>T	uc001tjl.2	-	2	395	c.329G>A	c.(328-330)GGA>GAA	p.G110E	C12orf48_uc001tjg.2_3'UTR|C12orf48_uc010swa.1_3'UTR|C12orf48_uc001tjf.2_3'UTR|C12orf48_uc001tjh.2_3'UTR|C12orf48_uc010swb.1_3'UTR|C12orf48_uc009zuc.2_3'UTR|C12orf48_uc001tjj.2_3'UTR|C12orf48_uc001tjk.2_3'UTR|C12orf48_uc009zud.2_3'UTR	NM_002674	NP_002665	P20382	MCH_HUMAN	pro-melanin-concentrating hormone	110					cell differentiation|neuropeptide signaling pathway|spermatogenesis|synaptic transmission		melanin-concentrating hormone activity				0						AGCTACAGATCCTTTTAGTGC	0.368													24	38					0	0	0.003330	0	0
IGF1	3479	broad.mit.edu	37	12	102869512	102869512	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:102869512G>A	uc001tjp.3	-	2	348	c.129C>T	c.(127-129)ACC>ACT	p.T43T	IGF1_uc001tjn.2_Silent_p.T27T|IGF1_uc001tjm.2_Silent_p.T43T|IGF1_uc001tjo.2_Silent_p.T43T	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	43					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						TGGCAGAGCTGGTGAAGGTGA	0.577													13	33					0	0	0.002450	0	0
STAB2	55576	broad.mit.edu	37	12	104046430	104046430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:104046430G>A	uc001tjw.2	+	12	1540	c.1354G>A	c.(1354-1356)GAC>AAC	p.D452N		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	452	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GAATAACACAGACATGTTCTA	0.388													21	31					0	0	0.001882	0	0
STAB2	55576	broad.mit.edu	37	12	104105273	104105273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:104105273G>A	uc001tjw.2	+	40	4499	c.4313G>A	c.(4312-4314)GGG>GAG	p.G1438E	STAB2_uc009zug.2_5'Flank	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1438	Extracellular (Potential).|EGF-like 11.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AACTGCAATGGGACATGCCAT	0.373													37	51					0	0	0.001951	0	0
HSP90B1	7184	broad.mit.edu	37	12	104327797	104327797	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:104327797T>C	uc001tkb.1	+	5	580	c.475T>C	c.(475-477)TTG>CTG	p.L159L	HSP90B1_uc010swg.1_Intron|HSP90B1_uc009zui.1_Silent_p.L159L	NM_003299	NP_003290	P14625	ENPL_HUMAN	heat shock protein 90kDa beta, member 1	159					actin rod assembly|anti-apoptosis|cellular response to ATP|ER-associated protein catabolic process|protein folding|protein transport|regulation of phosphoprotein phosphatase activity|response to hypoxia|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|melanosome|microsome|midbody|perinuclear region of cytoplasm	ATP binding|calcium ion binding|low-density lipoprotein particle receptor binding|protein phosphatase binding|RNA binding|unfolded protein binding|virion binding			ovary(2)|skin(1)	3					Rifabutin(DB00615)	CAGAGAAGAGTTGGTTAAAAA	0.408													28	44					0	0	0.001786	0	0
NUAK1	9891	broad.mit.edu	37	12	106461376	106461376	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:106461376G>C	uc001tlj.1	-	7	2570	c.1190C>G	c.(1189-1191)CCC>CGC	p.P397R		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	397							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						GATCCCCTTGGGCCTCTTAGA	0.517													34	50					0	0	0.003755	0	0
TCP11L2	255394	broad.mit.edu	37	12	106708261	106708261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:106708261C>T	uc001tln.2	+	3	457	c.283C>T	c.(283-285)CCA>TCA	p.P95S	TCP11L2_uc001tll.2_Missense_Mutation_p.P95S|TCP11L2_uc001tlm.2_Missense_Mutation_p.P95S	NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	95										ovary(3)	3						AGAGGCTCTCCCAGAAAAGAG	0.299													10	34					0	0	0.000673	0	0
POLR3B	55703	broad.mit.edu	37	12	106804625	106804625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:106804625G>A	uc001tlp.2	+	12	1210	c.988G>A	c.(988-990)GCC>ACC	p.A330T	POLR3B_uc001tlq.2_Missense_Mutation_p.A272T	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	330					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						CAATTTCCGAGCCAAATGTAT	0.353													15	28					0	0	0.004990	0	0
BTBD11	121551	broad.mit.edu	37	12	108051355	108051355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:108051355G>A	uc001tmk.1	+	17	3696	c.3175G>A	c.(3175-3177)GAA>AAA	p.E1059K	BTBD11_uc001tml.1_Missense_Mutation_p.E596K|BTBD11_uc001tmm.1_Missense_Mutation_p.E138K	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	1059						integral to membrane	DNA binding			skin(2)|ovary(1)	3						GGTCCTCATTGAAAACGAAGC	0.478													20	31					0	0	0.001523	0	0
WSCD2	9671	broad.mit.edu	37	12	108603899	108603899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:108603899G>A	uc001tms.2	+	4	1243	c.499G>A	c.(499-501)GGT>AGT	p.G167S	WSCD2_uc001tmt.2_Missense_Mutation_p.G167S	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	167	WSC 1.					integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						CTCCCCCAGGGGTTACCTGTA	0.642													15	13					0	0	0.000958	0	0
SART3	9733	broad.mit.edu	37	12	108930558	108930558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:108930558G>A	uc001tmz.1	-	10	1548	c.1313C>T	c.(1312-1314)TCC>TTC	p.S438F	SART3_uc001tmy.1_5'UTR|SART3_uc009zux.1_Missense_Mutation_p.S50F|SART3_uc010swx.1_Missense_Mutation_p.S402F|SART3_uc010swy.1_Missense_Mutation_p.S324F|SART3_uc010swz.1_Missense_Mutation_p.S438F|SART3_uc001tna.1_RNA	NM_014706	NP_055521	Q15020	SART3_HUMAN	squamous cell carcinoma antigen recognized by T	438					RNA processing	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding			pancreas(1)	1						CTCTTTACTGGAGTCTAACGG	0.448									Porokeratosis				13	19					0	0	0.001855	0	0
DAO	1610	broad.mit.edu	37	12	109292555	109292555	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:109292555C>T	uc001tnr.3	+	9	949	c.796C>T	c.(796-798)CTG>TTG	p.L266L	DAO_uc001tnq.3_Silent_p.L200L|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	266					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						CTGCTGCAGACTGGAGCCCAC	0.522													9	20					0	0	0.004482	0	0
DAO	1610	broad.mit.edu	37	12	109294211	109294211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:109294211G>A	uc001tnr.3	+	11	1097	c.944G>A	c.(943-945)GGG>GAG	p.G315E	DAO_uc001tnq.3_Missense_Mutation_p.G249E|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	315	FAD.				glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						GGAGGCTACGGGCTCACCATC	0.537													25	39					0	0	0.005443	0	0
ALKBH2	121642	broad.mit.edu	37	12	109530456	109530456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:109530456G>A	uc001tnx.2	-	2	529	c.136C>T	c.(136-138)CCA>TCA	p.P46S	ALKBH2_uc001tny.2_Missense_Mutation_p.P46S|ALKBH2_uc010sxj.1_Missense_Mutation_p.P46S|ALKBH2_uc009zvd.2_Missense_Mutation_p.P46S|ALKBH2_uc010sxk.1_Missense_Mutation_p.P46S	NM_001145374	NP_001138846	Q6NS38	ALKB2_HUMAN	AlkB homolog 2	46					DNA dealkylation involved in DNA repair|oxidative DNA demethylation	nucleoplasm	cytosine C-5 DNA demethylase activity|damaged DNA binding|DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0					Vitamin C(DB00126)	CCATTCCCTGGGGCCTCTCTC	0.587								Direct_reversal_of_damage					43	63					0	0	0.001706	0	0
ACACB	32	broad.mit.edu	37	12	109660623	109660623	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:109660623T>A	uc001tob.2	+	26	3817	c.3698T>A	c.(3697-3699)CTC>CAC	p.L1233H	ACACB_uc001toc.2_Missense_Mutation_p.L1233H	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1233					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GCCTCCCACCTCCCCTCCTAC	0.642													5	7					0	0	0.001984	0	0
TRPV4	59341	broad.mit.edu	37	12	110234354	110234354	+	Silent	SNP	G	A	A	rs141244183	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:110234354G>A	uc001tpj.1	-	6	1403	c.1308C>T	c.(1306-1308)ATC>ATT	p.I436I	TRPV4_uc001tpg.1_Silent_p.I402I|TRPV4_uc001tph.1_Silent_p.I389I|TRPV4_uc001tpi.1_Intron|TRPV4_uc001tpk.1_Silent_p.I436I|TRPV4_uc001tpl.1_Intron	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	436	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TGTACACCAGGATCTCCAGCA	0.627													10	19					0	0	0.000978	0	0
PPP1CC	5501	broad.mit.edu	37	12	111162533	111162533	+	Missense_Mutation	SNP	A	C	C	rs11558237		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:111162533A>C	uc001tru.2	-	4	700	c.455T>G	c.(454-456)TTC>TGC	p.F152C		NM_002710	NP_002701	P36873	PP1G_HUMAN	protein phosphatase 1, catalytic subunit, gamma	152					cell division|glycogen metabolic process|mitotic prometaphase|triglyceride catabolic process	cleavage furrow|condensed chromosome kinetochore|cytosol|midbody|MLL5-L complex|nuclear speck|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|protein binding|protein kinase binding|protein serine/threonine phosphatase activity			lung(2)|central_nervous_system(1)	3						ACAGTCTGTGAAAGTTTTCCA	0.363													25	46					0	0	0.001271	0	0
CUX2	23316	broad.mit.edu	37	12	111729321	111729321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:111729321C>T	uc001tsa.1	+	5	554	c.401C>T	c.(400-402)TCG>TTG	p.S134L	CUX2_uc001tsb.1_Missense_Mutation_p.S189L	NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	134						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CTCCACACTTCGTGGAAGAGG	0.602													10	12					0	0	0.000978	0	0
CUX2	23316	broad.mit.edu	37	12	111744858	111744859	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:111744858_111744859CC>TA	uc001tsa.1	+	11	1145_1146	c.992_993CC>TA	c.(991-993)TCC>TTA	p.S331L		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	331	Potential.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GAGGAGGCATCCGCCAACCAGA	0.688													5	10					0	0	0.004672	0	0
ACAD10	80724	broad.mit.edu	37	12	112187039	112187039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:112187039C>T	uc001tsq.2	+	18	2907	c.2707C>T	c.(2707-2709)CCT>TCT	p.P903S	ACAD10_uc009zvx.2_Missense_Mutation_p.P934S|ACAD10_uc001tss.1_Intron	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	903							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						GGTCCTGGGCCCTGGCCGAGG	0.587													47	53					0	0	0.002852	0	0
C12orf51	283450	broad.mit.edu	37	12	112610513	112610513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:112610513G>A	uc009zwc.2	-	60	10499	c.10481C>T	c.(10480-10482)CCC>CTC	p.P3494L		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						AGCATCCGCGGGGTCCAGGTA	0.637													13	20					0	0	0.003163	0	0
OAS1	4938	broad.mit.edu	37	12	113344866	113344866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:113344866C>T	uc001tud.2	+	1	128	c.22C>T	c.(22-24)CCA>TCA	p.P8S	OAS1_uc010syn.1_Missense_Mutation_p.P7S|OAS1_uc010syo.1_Missense_Mutation_p.P7S|OAS1_uc001tub.2_Missense_Mutation_p.P8S|OAS1_uc001tuc.2_Missense_Mutation_p.P8S|OAS1_uc009zwf.2_Missense_Mutation_p.P7S	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	8					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						CAGAAATACCCCAGCCAAATC	0.473													38	44					0	0	0.002522	0	0
RASAL1	8437	broad.mit.edu	37	12	113543543	113543543	+	Silent	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:113543543G>T	uc001tum.1	-	17	2096	c.1803C>A	c.(1801-1803)TCC>TCA	p.S601S	RASAL1_uc010syp.1_Silent_p.S602S|RASAL1_uc001tul.2_Silent_p.S601S|RASAL1_uc001tun.1_Silent_p.S603S|RASAL1_uc010syq.1_Silent_p.S602S|RASAL1_uc001tuo.3_Silent_p.S602S	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	601	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						TCTTGGAGAAGGAGAGGGTCT	0.552													13	26					0.000151284	0.000260568	0.001855	1	0
RASAL1	8437	broad.mit.edu	37	12	113544974	113544974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:113544974G>A	uc001tum.1	-	16	1878	c.1585C>T	c.(1585-1587)CCC>TCC	p.P529S	RASAL1_uc010syp.1_Missense_Mutation_p.P529S|RASAL1_uc001tul.2_Missense_Mutation_p.P529S|RASAL1_uc001tun.1_Missense_Mutation_p.P530S|RASAL1_uc010syq.1_Missense_Mutation_p.P529S|RASAL1_uc001tuo.3_Missense_Mutation_p.P529S|RASAL1_uc010syr.1_3'UTR	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	529					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						AGCAGGAAGGGGTGCAGGGGG	0.617													11	26					0	0	0.001368	0	0
RASAL1	8437	broad.mit.edu	37	12	113544998	113544998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:113544998C>T	uc001tum.1	-	16	1854	c.1561G>A	c.(1561-1563)GAA>AAA	p.E521K	RASAL1_uc010syp.1_Missense_Mutation_p.E521K|RASAL1_uc001tul.2_Missense_Mutation_p.E521K|RASAL1_uc001tun.1_Missense_Mutation_p.E522K|RASAL1_uc010syq.1_Missense_Mutation_p.E521K|RASAL1_uc001tuo.3_Missense_Mutation_p.E521K|RASAL1_uc010syr.1_3'UTR	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	521					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						ATCCACAGTTCCTTGCCTTGG	0.617													8	21					0	0	0.000443	0	0
RASAL1	8437	broad.mit.edu	37	12	113552637	113552637	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:113552637C>T	uc001tum.1	-	13	1442	c.1149G>A	c.(1147-1149)CTG>CTA	p.L383L	RASAL1_uc010syp.1_Silent_p.L383L|RASAL1_uc001tul.2_Silent_p.L383L|RASAL1_uc001tun.1_Silent_p.L383L|RASAL1_uc010syq.1_Silent_p.L383L|RASAL1_uc001tuo.3_Silent_p.L383L|RASAL1_uc010syr.1_Silent_p.L383L	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	383	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						TGCAGGGATCCAGCTCCATGT	0.637													64	146					0	0	0.003610	0	0
FBXW8	26259	broad.mit.edu	37	12	117462048	117462048	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:117462048C>T	uc001twg.1	+	9	1546	c.1464C>T	c.(1462-1464)ATC>ATT	p.I488I	FBXW8_uc001twf.1_Silent_p.I422I|FBXW8_uc009zwp.1_RNA	NM_153348	NP_699179	Q8N3Y1	FBXW8_HUMAN	F-box and WD repeat domain containing 8 isoform	488	WD 5.						protein binding			ovary(2)|pancreas(1)	3	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0353)		ACTGGAAGATCGTCAGTGGAG	0.577													14	22					0	0	0.002450	0	0
NOS1	4842	broad.mit.edu	37	12	117660561	117660561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:117660561C>T	uc001twm.1	-	26	4620	c.3934G>A	c.(3934-3936)GAG>AAG	p.E1312K		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1312					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GTGTACAGCTCTCTGAAGACC	0.587													31	52					0	0	0.001786	0	0
NOS1	4842	broad.mit.edu	37	12	117672548	117672548	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:117672548G>A	uc001twm.1	-	21	3743	c.3057C>T	c.(3055-3057)TTC>TTT	p.F1019F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1019	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGAGACGCACGAAGATAGTTG	0.512													6	18					0	0	0.001168	0	0
NOS1	4842	broad.mit.edu	37	12	117768576	117768576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:117768576G>A	uc001twm.1	-	2	985	c.299C>T	c.(298-300)CCT>CTT	p.P100L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	100	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GAAACCTTCAGGGCCCCTCAG	0.627													11	18					0	0	0.001368	0	0
KSR2	283455	broad.mit.edu	37	12	117962846	117962846	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:117962846A>G	uc001two.2	-	14	1998	c.1943T>C	c.(1942-1944)TTT>TCT	p.F648S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	677	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CACTTGCCCAAAGCGGCCCTT	0.607													11	18					0	0	0.000673	0	0
CCDC60	160777	broad.mit.edu	37	12	119942885	119942885	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:119942885C>T	uc001txe.2	+	7	1125	c.660C>T	c.(658-660)TTC>TTT	p.F220F	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	220										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CCAAGAAATTCAAAATTCCCA	0.398													26	35					0	0	0.005443	0	0
CCDC60	160777	broad.mit.edu	37	12	119968742	119968742	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:119968742C>T	uc001txe.2	+	13	1890	c.1425C>T	c.(1423-1425)ATC>ATT	p.I475I	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	475										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CCAAAAAGATCCTGGTGAAAC	0.488													33	58					0	0	0.001706	0	0
SPPL3	121665	broad.mit.edu	37	12	121202836	121202836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:121202836G>A	uc001tzd.2	-	11	1602	c.1121C>T	c.(1120-1122)TCC>TTC	p.S374F	SPPL3_uc009zwz.2_Missense_Mutation_p.S367F|SPPL3_uc001tzc.2_Missense_Mutation_p.S204F	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	375	Poly-Ser.					integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GCTGGACTTGGAGTGGAAAGG	0.498													21	26					0	0	0.003330	0	0
SPPL3	121665	broad.mit.edu	37	12	121206784	121206784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:121206784G>A	uc001tzd.2	-	7	1062	c.581C>T	c.(580-582)TCA>TTA	p.S194L	SPPL3_uc009zwz.2_Missense_Mutation_p.S187L|SPPL3_uc001tzc.2_Missense_Mutation_p.S24L	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	195	Helical; (Potential).					integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GAGAAGCCCTGAGAGAAGCAG	0.532													11	8					0	0	0.001855	0	0
HNF1A	6927	broad.mit.edu	37	12	121431496	121431496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:121431496G>A	uc001tzg.2	+	3	723	c.700G>A	c.(700-702)GAG>AAG	p.E234K	HNF1A_uc001tze.1_Missense_Mutation_p.E234K|HNF1A_uc001tzf.2_Missense_Mutation_p.E234K|HNF1A_uc010szn.1_Missense_Mutation_p.E234K	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	234	Homeobox; HNF1-type.				glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GACGCTAGTGGAGGAGTGCAA	0.582									Hepatic_Adenoma_Familial_Clustering_of				53	74					0	0	0.003610	0	0
P2RX4	5025	broad.mit.edu	37	12	121654979	121654979	+	Silent	SNP	C	A	A	rs144412132		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:121654979C>A	uc001tzr.2	+	2	481	c.177C>A	c.(175-177)TCC>TCA	p.S59S	P2RX4_uc010szr.1_RNA|P2RX4_uc010szs.1_RNA|P2RX4_uc009zxc.2_Silent_p.S59S|P2RX4_uc001tzs.2_Silent_p.S75S|P2RX4_uc009zxb.2_RNA|P2RX4_uc010szt.1_Intron	NM_002560	NP_002551	Q99571	P2RX4_HUMAN	purinergic receptor P2X4	59	Extracellular (Potential).				endothelial cell activation|negative regulation of cardiac muscle hypertrophy|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|regulation of apoptosis|regulation of blood pressure|regulation of sodium ion transport|relaxation of cardiac muscle|response to ATP|response to fluid shear stress|sensory perception of pain|tissue homeostasis	cell junction|perinuclear region of cytoplasm	cadherin binding|copper ion binding|extracellular ATP-gated cation channel activity|protein homodimerization activity|purinergic nucleotide receptor activity|receptor binding|zinc ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AAACTGACTCCGTGGTCAGCT	0.463													162	208					1.70094e-59	2.96438e-59	0.003610	1	0
P2RX4	5025	broad.mit.edu	37	12	121660778	121660778	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:121660778C>T	uc001tzr.2	+	5	760	c.456C>T	c.(454-456)TTC>TTT	p.F152F	P2RX4_uc010szr.1_Intron|P2RX4_uc010szs.1_Intron|P2RX4_uc009zxc.2_Intron|P2RX4_uc001tzs.2_Silent_p.F168F|P2RX4_uc009zxb.2_RNA|P2RX4_uc010szt.1_Silent_p.F51F	NM_002560	NP_002551	Q99571	P2RX4_HUMAN	purinergic receptor P2X4	152	Extracellular (Potential).				endothelial cell activation|negative regulation of cardiac muscle hypertrophy|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|regulation of apoptosis|regulation of blood pressure|regulation of sodium ion transport|relaxation of cardiac muscle|response to ATP|response to fluid shear stress|sensory perception of pain|tissue homeostasis	cell junction|perinuclear region of cytoplasm	cadherin binding|copper ion binding|extracellular ATP-gated cation channel activity|protein homodimerization activity|purinergic nucleotide receptor activity|receptor binding|zinc ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GCGTAGCTTTCAACGGGTCTG	0.577													63	84					0	0	0.003610	0	0
ANAPC5	51433	broad.mit.edu	37	12	121784743	121784743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:121784743G>A	uc001uag.2	-	3	475	c.353C>T	c.(352-354)TCT>TTT	p.S118F	ANAPC5_uc001uah.2_Missense_Mutation_p.S19F	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	118					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCCAGAGAAAGAATCTGAAAG	0.383													135	245					0	0	0.003610	0	0
MLXIP	22877	broad.mit.edu	37	12	122618397	122618397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:122618397C>T	uc001ubq.2	+	9	1595	c.1595C>T	c.(1594-1596)CCC>CTC	p.P532L	MLXIP_uc001ubr.2_Missense_Mutation_p.P283L|MLXIP_uc001ubs.1_Missense_Mutation_p.P139L|MLXIP_uc001ubt.2_Missense_Mutation_p.P139L	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	532					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		ACCCGGCCTCCCCAGCCACGG	0.612													4	9					0	0	0.001168	0	0
LRRC43	254050	broad.mit.edu	37	12	122674686	122674686	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:122674686C>T	uc009zxm.2	+	5	697	c.672C>T	c.(670-672)CTC>CTT	p.L224L	LRRC43_uc001ubw.3_Silent_p.L39L|LRRC43_uc009zxn.2_5'UTR	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	224	LRR 4.										0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		GGCCCAACCTCGTCTCCCTGG	0.657													44	66					0	0	0.003610	0	0
DNAH10	196385	broad.mit.edu	37	12	124270403	124270403	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:124270403G>A	uc001uft.3	+	9	1183	c.1158G>A	c.(1156-1158)AGG>AGA	p.R386R		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	386	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AAGACGAGAGGATGATTCCGC	0.567													27	33					0	0	0.001786	0	0
DNAH10	196385	broad.mit.edu	37	12	124272467	124272467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:124272467G>A	uc001uft.3	+	10	1380	c.1355G>A	c.(1354-1356)CGG>CAG	p.R452Q	DNAH10_uc010tav.1_5'Flank|DNAH10_uc010taw.1_5'Flank	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	452	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AGGGAAGATCGGTGGGAGTTT	0.582													8	5					0	0	0.003080	0	0
DNAH10	196385	broad.mit.edu	37	12	124298163	124298163	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:124298163C>T	uc001uft.3	+	19	3268	c.3243C>T	c.(3241-3243)CTC>CTT	p.L1081L	DNAH10_uc010tav.1_Silent_p.L623L|DNAH10_uc010taw.1_Silent_p.L566L	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1081	Stem (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AAGAGGAGCTCTATAATCTCC	0.433													19	28					0	0	0.001216	0	0
DNAH10	196385	broad.mit.edu	37	12	124311243	124311243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:124311243G>A	uc001uft.3	+	24	3860	c.3835G>A	c.(3835-3837)GAA>AAA	p.E1279K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1279	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GGTTGCAAAAGAAGAATGGTC	0.468													30	45					0	0	0.001786	0	0
DNAH10	196385	broad.mit.edu	37	12	124415044	124415044	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:124415044C>T	uc001uft.3	+	72	12379	c.12354C>T	c.(12352-12354)TTC>TTT	p.F4118F	DNAH10_uc001ufu.3_Silent_p.F31F	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	4118					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TTGATACTTTCCAGCCATTCC	0.458													9	15					0	0	0.004482	0	0
NCOR2	9612	broad.mit.edu	37	12	124831142	124831142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:124831142G>A	uc010tba.1	-	31	4468	c.4351C>T	c.(4351-4353)CCG>TCG	p.P1451S	NCOR2_uc010tay.1_Missense_Mutation_p.P1450S|NCOR2_uc010taz.1_Missense_Mutation_p.P1434S|NCOR2_uc010tbb.1_Missense_Mutation_p.P1443S|NCOR2_uc010tbc.1_Missense_Mutation_p.P1433S|NCOR2_uc001ugj.1_Missense_Mutation_p.P1451S	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1451					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		AGCGGCCGCGGGGCCAGGGGC	0.731													8	10					0	0	0.000673	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558775	129558775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:129558775G>A	uc009zyl.1	-	9	3273	c.2945C>T	c.(2944-2946)TCC>TTC	p.S982F	TMEM132D_uc001uia.2_Missense_Mutation_p.S520F	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	982	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		ATCTTGCGAGGAGGCAAAGTT	0.493													55	62					0	0	0.003610	0	0
TMEM132D	121256	broad.mit.edu	37	12	129559022	129559022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:129559022C>T	uc009zyl.1	-	9	3026	c.2698G>A	c.(2698-2700)GAA>AAA	p.E900K	TMEM132D_uc001uia.2_Missense_Mutation_p.E438K	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	900	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CCATCCATTTCCCCATTGCTT	0.522													16	31					0	0	0.004007	0	0
TMEM132D	121256	broad.mit.edu	37	12	129694141	129694141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:129694141G>A	uc009zyl.1	-	5	1695	c.1367C>T	c.(1366-1368)TCC>TTC	p.S456F		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	456	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GTCCTCCACGGAGACCACTTT	0.572													8	15					0	0	0.003080	0	0
TMEM132D	121256	broad.mit.edu	37	12	129822208	129822208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:129822208C>T	uc009zyl.1	-	4	1598	c.1270G>A	c.(1270-1272)GAC>AAC	p.D424N		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	424	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CCAATCAAGTCCTTTGGGCTC	0.607													34	53					0	0	0.004878	0	0
RIMBP2	23504	broad.mit.edu	37	12	130897266	130897266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:130897266G>A	uc001uil.2	-	15	2883	c.2719C>T	c.(2719-2721)CCT>TCT	p.P907S		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	907	SH3 2.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		ATGTTACAAGGAATAAGGCCA	0.463													28	18					0	0	0.005443	0	0
GPR133	283383	broad.mit.edu	37	12	131620581	131620581	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:131620581G>A	uc001uit.3	+	22	2827	c.2268_splice	c.e22-1	p.K756_splice	GPR133_uc010tbm.1_Splice_Site_p.K788_splice|GPR133_uc009zyo.2_Splice_Site_p.K38_splice|GPR133_uc009zyp.2_Splice_Site	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor						neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		TTTCTCTCCAGGTTGACAGCC	0.612													5	13					0	0	0.003080	0	0
EP400	57634	broad.mit.edu	37	12	132510207	132510207	+	Silent	SNP	C	T	T	rs142800597		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:132510207C>T	uc001ujn.2	+	24	4907	c.4872C>T	c.(4870-4872)ATC>ATT	p.I1624I	EP400_uc001ujl.2_Silent_p.I1623I|EP400_uc001ujm.2_Silent_p.I1543I	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1660					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		TCCTCCAGATCGTGTCCGCCC	0.612													11	18					0	0	0.001368	0	0
EP400	57634	broad.mit.edu	37	12	132551442	132551442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:132551442C>T	uc001ujn.2	+	48	8712	c.8677C>T	c.(8677-8679)CCG>TCG	p.P2893S	EP400_uc001ujl.2_Missense_Mutation_p.P2892S|EP400_uc001ujm.2_Missense_Mutation_p.P2812S|EP400_uc001ujp.2_Missense_Mutation_p.P103S	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2929					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GGTCTCCTCACCGGGAGTCAC	0.701													10	17					0	0	0.000673	0	0
P2RX2	22953	broad.mit.edu	37	12	133196666	133196666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:133196666G>A	uc001ukj.1	+	5	538	c.538G>A	c.(538-540)GAT>AAT	p.D180N	P2RX2_uc001uki.1_Missense_Mutation_p.D180N|P2RX2_uc001ukk.1_Missense_Mutation_p.D180N|P2RX2_uc001ukl.1_Missense_Mutation_p.D156N|P2RX2_uc001ukm.1_Missense_Mutation_p.D108N|P2RX2_uc001ukn.1_Missense_Mutation_p.D88N|P2RX2_uc009zyt.1_Missense_Mutation_p.D180N|P2RX2_uc001uko.1_Missense_Mutation_p.R144K	NM_170682	NP_733782	Q9UBL9	P2RX2_HUMAN	purinergic receptor P2X2 isoform A	180	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|protein homooligomerization	integral to membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0767)		OV - Ovarian serous cystadenocarcinoma(86;2.32e-08)|Epithelial(86;8.62e-08)|all cancers(50;4.5e-06)		CCCGGTGGAAGATGGGGCCTC	0.682													7	4					0	0	0.001984	0	0
LOC284232	284232	broad.mit.edu	37	13	19445989	19445989	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:19445989G>A	uc010tcj.1	-	1		c.121C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CATTTAAAAAGAACTACTGTA	0.318													43	8					0	0	0.002222	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24465622	24465622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:24465622C>T	uc010tcw.1	-	3	808	c.808G>A	c.(808-810)GGA>AGA	p.G270R	MIPEP_uc001uox.3_5'Flank|PCOTH_uc001uoy.2_5'UTR|PCOTH_uc009zzx.2_Intron|C1QTNF9B_uc010tcv.1_Missense_Mutation_p.R106Q|C1QTNF9B_uc001uoz.1_Silent_p.T98T|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.G270R	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	270	C1q.					collagen					0						ATTTTTACTCCGTTTTTGACC	0.502													23	16					0	0	0.003330	0	0
WASF3	10810	broad.mit.edu	37	13	27259904	27259904	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:27259904C>T	uc001uqv.2	+	10	1656	c.1431C>T	c.(1429-1431)ATC>ATT	p.I477I	WASF3_uc001uqw.2_Silent_p.I474I	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	477					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		TGGCCACGATCCTGTCCCGGC	0.612													21	9					0	0	0.001523	0	0
WASF3	10810	broad.mit.edu	37	13	27259953	27259953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:27259953G>A	uc001uqv.2	+	10	1705	c.1480G>A	c.(1480-1482)GAG>AAG	p.E494K	WASF3_uc001uqw.2_Missense_Mutation_p.E491K	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	494					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CGACGACTCAGAGTTCGACGA	0.607													19	4					0	0	0.001882	0	0
FLT3	2322	broad.mit.edu	37	13	28578200	28578200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:28578200C>T	uc001urw.2	-	24	3053	c.2971G>A	c.(2971-2973)GAA>AAA	p.E991K	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.E950K	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	991	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TACGAATCTTCGACCTGAGCC	0.453			Mis|O		AML|ALL								24	30					0	0	0.004656	0	0
FLT1	2321	broad.mit.edu	37	13	28877378	28877378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:28877378C>T	uc001usb.3	-	30	4228	c.3943G>A	c.(3943-3945)GAA>AAA	p.E1315K	FLT1_uc010aap.2_Missense_Mutation_p.E320K|FLT1_uc010aaq.2_Missense_Mutation_p.E440K|FLT1_uc001usa.3_Missense_Mutation_p.E533K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1315	Cytoplasmic (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	ATTTTCCTTTCCAGCTCAGCG	0.582													26	35					0	0	0.003954	0	0
MTUS2	23281	broad.mit.edu	37	13	29599079	29599079	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:29599079C>T	uc001usl.3	+	1	332	c.274C>T	c.(274-276)CAG>TAG	p.Q92*		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	82						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TCACCAACTTCAGGGCTTTGG	0.453													10	35					0	0	0.000673	0	0
MTUS2	23281	broad.mit.edu	37	13	29599243	29599243	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:29599243G>A	uc001usl.3	+	1	496	c.438G>A	c.(436-438)AGG>AGA	p.R146R		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	136						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CGAGTTGGAGGAATGTGATGA	0.507													61	41					0	0	0.003610	0	0
MTUS2	23281	broad.mit.edu	37	13	30077312	30077312	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:30077312C>T	uc001usl.3	+	14	4167	c.4109C>T	c.(4108-4110)TCT>TTT	p.S1370F	MTUS2_uc001usm.3_Missense_Mutation_p.S339F|MTUS2_uc010aau.2_Missense_Mutation_p.S249F|MTUS2_uc010tdq.1_Missense_Mutation_p.S122F	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1360						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GGGCCCTCCTCTCCGGCCAGA	0.642													10	23					0	0	0.000978	0	0
BRCA2	675	broad.mit.edu	37	13	32914045	32914045	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:32914045C>T	uc001uub.1	+	11	5780	c.5553C>T	c.(5551-5553)ATC>ATT	p.I1851I		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	1851	BRCA2 6.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		GTGGTAAAATCGTTTGTGTTT	0.308			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			65	38					0	0	0.003610	0	0
KL	9365	broad.mit.edu	37	13	33629411	33629411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:33629411C>T	uc001uus.2	+	3	1566	c.1558C>T	c.(1558-1560)CCC>TCC	p.P520S	KL_uc001uur.1_Missense_Mutation_p.P213S	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	520	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		AGGGACATTTCCCTGTGACTT	0.438													56	37					0	0	0.003610	0	0
NBEA	26960	broad.mit.edu	37	13	35716405	35716405	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:35716405G>A	uc001uvb.2	+	19	2543	c.2337_splice	c.e19-1	p.K779_splice		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin							cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CTTCTCTCCAGGAGAAAAGTT	0.373													24	99					0	0	0.002299	0	0
NBEA	26960	broad.mit.edu	37	13	35733949	35733949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:35733949C>T	uc001uvb.2	+	23	3847	c.3641C>T	c.(3640-3642)TCA>TTA	p.S1214L	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1214						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CATACAACTTCAGATGGAATG	0.398													15	25					0	0	0.003163	0	0
NBEA	26960	broad.mit.edu	37	13	36125135	36125135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:36125135G>A	uc001uvb.2	+	43	6978	c.6772G>A	c.(6772-6774)GGA>AGA	p.G2258R	NBEA_uc010abi.2_Missense_Mutation_p.G914R|NBEA_uc010tee.1_Missense_Mutation_p.G51R|NBEA_uc010tef.1_Missense_Mutation_p.G51R|NBEA_uc010teg.1_Missense_Mutation_p.G51R	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2258						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCCTCGGGTTGGAGTAGGGAC	0.358													19	25					0	0	0.001882	0	0
NBEA	26960	broad.mit.edu	37	13	36158062	36158062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:36158062G>A	uc001uvb.2	+	46	7269	c.7063G>A	c.(7063-7065)GCT>ACT	p.A2355T	NBEA_uc010abi.2_Missense_Mutation_p.A1011T|NBEA_uc010tee.1_Missense_Mutation_p.A148T|NBEA_uc010tef.1_Missense_Mutation_p.A148T|NBEA_uc010teg.1_Missense_Mutation_p.A148T	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2355	BEACH.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CCCCAAGAGAGCTGTGTTTTA	0.328													77	55					0	0	0.003610	0	0
CCNA1	8900	broad.mit.edu	37	13	37011835	37011835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:37011835C>T	uc001uvr.3	+	3	717	c.367C>T	c.(367-369)CCT>TCT	p.P123S	CCNA1_uc010teo.1_Missense_Mutation_p.P79S|CCNA1_uc010abq.2_Missense_Mutation_p.P79S|CCNA1_uc010abp.2_Missense_Mutation_p.P79S|CCNA1_uc001uvs.3_Missense_Mutation_p.P122S|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	123					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding	p.P123>S(1)		lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		GAAAGCACTCCCTGACTGTGG	0.493													39	32					0	0	0.005524	0	0
TRPC4	7223	broad.mit.edu	37	13	38211199	38211199	+	Silent	SNP	C	T	T	rs149495867		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:38211199C>T	uc001uws.2	-	11	3010	c.2775G>A	c.(2773-2775)AAG>AAA	p.K925K	TRPC4_uc010abv.2_Silent_p.K505K|TRPC4_uc001uwt.2_Silent_p.K841K|TRPC4_uc010tey.1_Silent_p.K784K|TRPC4_uc010abw.2_Silent_p.K752K|TRPC4_uc010abx.2_Silent_p.K930K|TRPC4_uc010aby.2_Silent_p.K776K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	925	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GACACACTCTCTTTCCTACCT	0.468													28	63					0	0	0.001271	0	0
TRPC4	7223	broad.mit.edu	37	13	38211237	38211237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:38211237C>T	uc001uws.2	-	11	2972	c.2737G>A	c.(2737-2739)GAA>AAA	p.E913K	TRPC4_uc010abv.2_Missense_Mutation_p.E493K|TRPC4_uc001uwt.2_Missense_Mutation_p.E829K|TRPC4_uc010tey.1_Missense_Mutation_p.E772K|TRPC4_uc010abw.2_Missense_Mutation_p.E740K|TRPC4_uc010abx.2_Missense_Mutation_p.E918K|TRPC4_uc010aby.2_Missense_Mutation_p.E764K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	913	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GTATTCCTTTCTCTATGGTCT	0.463													20	44					0	0	0.001523	0	0
TRPC4	7223	broad.mit.edu	37	13	38213191	38213191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:38213191C>T	uc001uws.2	-	10	2432	c.2197G>A	c.(2197-2199)GAA>AAA	p.E733K	TRPC4_uc010abv.2_Missense_Mutation_p.E313K|TRPC4_uc001uwt.2_Missense_Mutation_p.E733K|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.E560K|TRPC4_uc010abx.2_Missense_Mutation_p.E738K|TRPC4_uc010aby.2_Missense_Mutation_p.E668K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	733	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AAGTTCTCTTCGGTCAGGCCT	0.403													48	136					0	0	0.003610	0	0
TRPC4	7223	broad.mit.edu	37	13	38357147	38357147	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:38357147G>A	uc001uws.2	-	2	559	c.324C>T	c.(322-324)GTC>GTT	p.V108V	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Silent_p.V108V|TRPC4_uc010tey.1_Silent_p.V108V|TRPC4_uc010abw.2_Silent_p.V108V|TRPC4_uc010abx.2_Silent_p.V108V|TRPC4_uc010aby.2_Silent_p.V108V	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	108	ANK 3.|Cytoplasmic (Potential).|Multimerization domain (By similarity).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CAGCTCCGACGACTTCTTTTC	0.299													74	41					0	0	0.003610	0	0
TRPC4	7223	broad.mit.edu	37	13	38357417	38357417	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:38357417G>A	uc001uws.2	-	2	289	c.54C>T	c.(52-54)ATC>ATT	p.I18I	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Silent_p.I18I|TRPC4_uc010tey.1_Silent_p.I18I|TRPC4_uc010abw.2_Silent_p.I18I|TRPC4_uc010abx.2_Silent_p.I18I|TRPC4_uc010aby.2_Silent_p.I18I	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	18	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TCCTTAGAGGGATGCGGTCTC	0.403													58	100					0	0	0.003610	0	0
STOML3	161003	broad.mit.edu	37	13	39544509	39544509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:39544509G>A	uc001uwx.2	-	5	467	c.329C>T	c.(328-330)TCC>TTC	p.S110F	STOML3_uc010tez.1_Missense_Mutation_p.S101F	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	110	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		AGTAGTTACGGAGTCTCTGGT	0.448													74	47					0	0	0.003610	0	0
ELF1	1997	broad.mit.edu	37	13	41525489	41525489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:41525489G>A	uc001uxs.2	-	4	710	c.337C>T	c.(337-339)CCT>TCT	p.P113S	ELF1_uc010tfc.1_Missense_Mutation_p.P113S|ELF1_uc010acd.2_Missense_Mutation_p.P6S	NM_172373	NP_758961	P32519	ELF1_HUMAN	E74-like factor 1 (ets domain transcription	113					positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung NSC(96;8.3e-05)|Prostate(109;0.0233)|Breast(139;0.0296)|Lung SC(185;0.0367)		all cancers(112;1.87e-08)|Epithelial(112;8.45e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000202)|GBM - Glioblastoma multiforme(144;0.00266)|BRCA - Breast invasive adenocarcinoma(63;0.072)		TCCAGCATAGGGCCAGGGGAA	0.368													26	96					0	0	0.001061	0	0
KIAA0564	23078	broad.mit.edu	37	13	42460146	42460146	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:42460146G>A	uc001uyj.2	-	8	955	c.885C>T	c.(883-885)TCC>TCT	p.S295S	KIAA0564_uc001uyk.2_Silent_p.S295S	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	295						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TTGTGGCAAAGGACAAGAGCT	0.323													22	12					0	0	0.003330	0	0
EPSTI1	94240	broad.mit.edu	37	13	43537394	43537394	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:43537394C>T	uc001uyw.1	-	5	562	c.486G>A	c.(484-486)GAG>GAA	p.E162E	EPSTI1_uc001uyx.1_Silent_p.E162E	NM_001002264	NP_001002264	Q96J88	ESIP1_HUMAN	epithelial stromal interaction 1 isoform 1	162	Potential.									ovary(1)	1		Lung NSC(96;3.6e-06)|Breast(139;0.00869)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		GBM - Glioblastoma multiforme(144;0.000528)|BRCA - Breast invasive adenocarcinoma(63;0.0858)		TCCTTACCTTCTCTCTCTGAA	0.308													49	45					0	0	0.003610	0	0
SPERT	220082	broad.mit.edu	37	13	46287745	46287745	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:46287745C>T	uc001van.1	+	3	665	c.585C>T	c.(583-585)ATC>ATT	p.I195I	SPERT_uc001vao.2_Silent_p.I159I	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	195	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		AGAACAAGATCCTACAGGTCT	0.632													20	30					0	0	0.001216	0	0
ZC3H13	23091	broad.mit.edu	37	13	46543265	46543265	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:46543265G>A	uc010tfw.1	-	13	3420	c.3414C>T	c.(3412-3414)TCC>TCT	p.S1138S	ZC3H13_uc001vaq.2_5'Flank|ZC3H13_uc001vas.1_Silent_p.S1138S|ZC3H13_uc001vat.1_Silent_p.S1138S	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	1138							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		tggcagaggtggaaatagtga	0.159													24	30					0	0	0.002299	0	0
HTR2A	3356	broad.mit.edu	37	13	47409676	47409676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:47409676C>T	uc001vbq.2	-	3	846	c.712G>A	c.(712-714)GGC>AGC	p.G238S	HTR2A_uc001vbr.2_Missense_Mutation_p.G138S|HTR2A_uc010acr.2_Missense_Mutation_p.G238S	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	238	Helical; Name=5; (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	ACAAAAGAGCCGATCAGGACA	0.428													28	28					0	0	0.002445	0	0
FNDC3A	22862	broad.mit.edu	37	13	49688850	49688850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:49688850C>T	uc001vcm.2	+	4	540	c.235C>T	c.(235-237)CCT>TCT	p.P79S	FNDC3A_uc001vcl.1_Missense_Mutation_p.P79S|FNDC3A_uc001vcn.2_Missense_Mutation_p.P79S|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcp.1_Missense_Mutation_p.P23S|FNDC3A_uc001vcq.2_Missense_Mutation_p.P23S	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	79	Pro-rich.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		CTATGTGCCTCCTGGATATGC	0.358													203	167					0	0	0.003610	0	0
EBPL	84650	broad.mit.edu	37	13	50235188	50235188	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:50235188G>A	uc001vdg.2	-	4	600	c.537C>T	c.(535-537)ATC>ATT	p.I179I	EBPL_uc001vdh.2_RNA|EBPL_uc001vdi.2_3'UTR	NM_032565	NP_115954	Q9BY08	EBPL_HUMAN	emopamil binding related protein, delta8-delta7	179	Helical; (Potential).				sterol metabolic process	endoplasmic reticulum membrane|integral to membrane	cholestenol delta-isomerase activity				0		Lung NSC(96;0.000468)|Breast(56;0.0011)|Prostate(109;0.00243)|Hepatocellular(98;0.0556)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.06e-09)		GCAGTCCTGGGATCAGAACCC	0.458													15	29					0	0	0.003163	0	0
INTS6	26512	broad.mit.edu	37	13	51963578	51963578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:51963578G>A	uc001vfk.2	-	6	1230	c.616C>T	c.(616-618)CGT>TGT	p.R206C	INTS6_uc001vfj.2_Missense_Mutation_p.R193C|INTS6_uc001vfl.2_Missense_Mutation_p.R28C	NM_012141	NP_036273	Q9UL03	INT6_HUMAN	integrator complex subunit 6 isoform a	206	VWFA.				snRNA processing	actin cytoskeleton|integrator complex	protein binding|transmembrane receptor activity			ovary(1)|lung(1)	2		Breast(56;0.000286)|Lung NSC(96;0.00145)|Prostate(109;0.00403)|Hepatocellular(98;0.065)|Myeloproliferative disorder(33;0.163)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;7.7e-08)		GAATATGAACGGCCTGAGATT	0.333													31	59					0	0	0.002096	0	0
ATP7B	540	broad.mit.edu	37	13	52511477	52511477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:52511477C>T	uc001vfw.2	-	19	4113	c.3956G>A	c.(3955-3957)CGA>CAA	p.R1319Q	ATP7B_uc010adv.2_Missense_Mutation_p.R889Q|ATP7B_uc001vfx.2_Missense_Mutation_p.R1112Q|ATP7B_uc001vfy.2_Missense_Mutation_p.R1208Q|ATP7B_uc010tgt.1_Missense_Mutation_p.R1254Q|ATP7B_uc010tgu.1_Missense_Mutation_p.R1271Q|ATP7B_uc010tgv.1_Missense_Mutation_p.R1241Q|ATP7B_uc001vfv.2_Missense_Mutation_p.R591Q|ATP7B_uc010tgs.1_Missense_Mutation_p.R530Q	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1319	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GCGTATCCTTCGGACAGTCCT	0.542									Wilson_disease				37	26					0	0	0.005524	0	0
PCDH8	5100	broad.mit.edu	37	13	53419641	53419641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:53419641C>T	uc001vhi.2	-	2	2961	c.2758G>A	c.(2758-2760)GGG>AGG	p.G920R	PCDH8_uc001vhj.2_Missense_Mutation_p.G823R	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	920	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		TCACTGTCCCCTTTACCGCTG	0.542													22	34					0	0	0.001061	0	0
OLFM4	10562	broad.mit.edu	37	13	53624759	53624759	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:53624759G>A	uc001vhl.2	+	5	1386	c.1386G>A	c.(1384-1386)GGG>GGA	p.G462G	OLFM4_uc001vhk.1_3'UTR	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	olfactomedin 4 precursor	462	Olfactomedin-like.				cell adhesion	extracellular space				skin(1)	1		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		CAAACACAGGGAAAGAGGGCA	0.398													32	27					0	0	0.002445	0	0
PCDH17	27253	broad.mit.edu	37	13	58207617	58207617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:58207617G>A	uc001vhq.1	+	1	1829	c.937G>A	c.(937-939)GAA>AAA	p.E313K	PCDH17_uc010aec.1_Missense_Mutation_p.E313K	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	313	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GGACTATGAGGAAAACGGGAT	0.587													12	19					0	0	0.001368	0	0
PCDH17	27253	broad.mit.edu	37	13	58298822	58298822	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:58298822C>T	uc001vhq.1	+	4	3766	c.2874C>T	c.(2872-2874)TTC>TTT	p.F958F	PCDH17_uc010aec.1_Silent_p.F957F|PCDH17_uc001vhr.1_Silent_p.F47F	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	958	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		TGCCACAGTTCCCTGCAGCCA	0.443													15	21					0	0	0.002450	0	0
PCDH17	27253	broad.mit.edu	37	13	58299275	58299275	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:58299275G>A	uc001vhq.1	+	4	4219	c.3327G>A	c.(3325-3327)CGG>CGA	p.R1109R	PCDH17_uc010aec.1_Silent_p.R1108R|PCDH17_uc001vhr.1_Silent_p.R198R	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1109	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GAGCCAGCCGGGATTCCAGTG	0.522													55	81					0	0	0.003610	0	0
DIAPH3	81624	broad.mit.edu	37	13	60548485	60548485	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:60548485C>T	uc001vht.2	-	15	1869	c.1650_splice	c.e15+1	p.Q550_splice	DIAPH3_uc001vhu.2_Splice_Site_p.Q287_splice|DIAPH3_uc001vhv.2_Splice_Site_p.Q128_splice	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a						actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		TGGAATTTTACCTGAGACTTA	0.348													25	56					0	0	0.005443	0	0
KLHL1	57626	broad.mit.edu	37	13	70281891	70281891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:70281891G>A	uc001vip.2	-	10	2847	c.2053C>T	c.(2053-2055)CCT>TCT	p.P685S	KLHL1_uc010thm.1_Missense_Mutation_p.P624S	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	685	Kelch 5.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		ATACTCAAAGGAGCCACCATG	0.388													9	11					0	0	0.000673	0	0
KLHL1	57626	broad.mit.edu	37	13	70314627	70314627	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:70314627C>T	uc001vip.2	-	8	2495	c.1701G>A	c.(1699-1701)CTG>CTA	p.L567L	KLHL1_uc010thm.1_Silent_p.L506L	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	567	Kelch 3.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CCACTGTATTCAGATAGCTCC	0.403													20	10					0	0	0.001523	0	0
KLHL1	57626	broad.mit.edu	37	13	70514274	70514274	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:70514274G>A	uc001vip.2	-	4	1706	c.912C>T	c.(910-912)TTC>TTT	p.F304F	KLHL1_uc010thm.1_Silent_p.F243F	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	304					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GCTTCATGAGGAAGTGGCAGC	0.478													15	7					0	0	0.004990	0	0
LMO7	4008	broad.mit.edu	37	13	76432095	76432095	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:76432095G>A	uc001vjv.2	+	27	4864	c.4104G>A	c.(4102-4104)ACG>ACA	p.T1368T	LMO7_uc010thv.1_3'UTR|LMO7_uc010thw.1_3'UTR|LMO7_uc001vjx.1_RNA	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	Error:Variant_position_missing_in_Q8WWI1_after_alignment						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		GCCTCCATACGAAAGCACTGT	0.388													49	9					0	0	0.003610	0	0
MYCBP2	23077	broad.mit.edu	37	13	77656067	77656067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:77656067G>A	uc001vkf.2	-	65	11075	c.10984C>T	c.(10984-10986)CAT>TAT	p.H3662Y	MYCBP2_uc010aev.2_Missense_Mutation_p.H3066Y|MYCBP2_uc001vke.2_Missense_Mutation_p.H282Y	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3662					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TTAATGTGATGAAAGACGTTG	0.373													34	9					0	0	0.002445	0	0
RNF219	79596	broad.mit.edu	37	13	79189748	79189748	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:79189748G>A	uc001vkw.1	-	6	2207	c.2148C>T	c.(2146-2148)TCC>TCT	p.S716S	uc001vku.1_Intron|RNF219_uc010afb.1_Silent_p.S526S|RNF219_uc010afc.2_3'UTR	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	716	Ser-rich.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		GGCTGGCACTGGAAAGGCTGC	0.373													53	19					0	0	0.003610	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453717	84453717	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:84453717G>A	uc001vlk.2	-	1	2812	c.1926C>T	c.(1924-1926)ATC>ATT	p.I642I		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	642	Helical; (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GGTTCCTCAGGATAAACACGA	0.562													11	7					0	0	0.001855	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369087	86369087	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:86369087C>T	uc001vll.1	-	2	2016	c.1557G>A	c.(1555-1557)TGG>TGA	p.W519*	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	519	LRRCT 2.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		AGGAGCAGTCCCAGGGGTTAT	0.448													27	8					0	0	0.001786	0	0
SLC15A1	6564	broad.mit.edu	37	13	99337053	99337053	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:99337053C>T	uc001vno.2	-	23	2129	c.2052G>A	c.(2050-2052)GAG>GAA	p.E684E		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	684	Cytoplasmic (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TCTTTTCATCCTCATCAAATT	0.448													26	3					0	0	0.005443	0	0
ERCC5	2073	broad.mit.edu	37	13	103524668	103524668	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:103524668C>T	uc001vpw.2	+	13	3242	c.2799C>T	c.(2797-2799)GCC>GCT	p.A933A	ERCC5_uc001vpu.1_Silent_p.A1387A|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Silent_p.A765A	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	933					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CAGCTGTTGCCGAGGCCTACC	0.433			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				18	8					0	0	0.001216	0	0
SLC10A2	6555	broad.mit.edu	37	13	103718317	103718317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:103718317G>A	uc001vpy.3	-	1	880	c.283C>T	c.(283-285)CTC>TTC	p.L95F		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	95	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ACGGCCTGGAGCGGGAGGATG	0.547													39	14					0	0	0.001951	0	0
EFNB2	1948	broad.mit.edu	37	13	107145751	107145751	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:107145751G>A	uc001vqi.2	-	5	664	c.639C>T	c.(637-639)GCC>GCT	p.A213A		NM_004093	NP_004084	P52799	EFNB2_HUMAN	ephrin B2 precursor	213	Extracellular (Potential).				cell differentiation|cell-cell signaling|interspecies interaction between organisms|nervous system development	integral to plasma membrane	ephrin receptor binding			ovary(1)	1	Lung NSC(43;0.015)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					CCGAATGTCCGGCGCTGTTGC	0.478													27	10					0	0	0.001512	0	0
F10	2159	broad.mit.edu	37	13	113803279	113803279	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:113803279G>A	uc001vsx.2	+	8	972	c.915G>A	c.(913-915)GTG>GTA	p.V305V	F10_uc001vsy.2_Nonsense_Mutation_p.W302*|F10_uc001vsz.2_Nonsense_Mutation_p.W304*	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	305	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGCACGAGGTGGAGGTGGTCA	0.622													41	21					0	0	0.002852	0	0
CUL4A	8451	broad.mit.edu	37	13	113899313	113899313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:113899313C>T	uc010tjy.1	+	14	1395	c.1384C>T	c.(1384-1386)CTT>TTT	p.L462F	CUL4A_uc010tjx.1_Missense_Mutation_p.L362F|CUL4A_uc010agu.2_Missense_Mutation_p.L323F|CUL4A_uc010tjz.1_Missense_Mutation_p.L141F	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	462					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			AAAAAGACTCCTTGTTGGGAA	0.408													18	7					0	0	0.001523	0	0
TFDP1	7027	broad.mit.edu	37	13	114287579	114287579	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:114287579C>T	uc001vtw.2	+	6	665	c.453C>T	c.(451-453)AAC>AAT	p.N151N	TFDP1_uc010tkd.1_Silent_p.N56N|TFDP1_uc010tke.1_Silent_p.N56N|TFDP1_uc001vty.3_Silent_p.N151N|TFDP1_uc001vtx.2_Silent_p.N31N|TFDP1_uc010agx.2_Silent_p.N151N	NM_007111	NP_009042	Q14186	TFDP1_HUMAN	transcription factor Dp-1	151	Potential.				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			lung(4)|ovary(2)|skin(1)	7	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.132)|all_epithelial(44;0.0731)|all_lung(25;0.149)|Breast(118;0.153)	all cancers(43;0.0576)			CTGCCGACAACCACATCTTAC	0.562										TSP Lung(29;0.18)			17	3					0	0	0.002299	0	0
GAS6	2621	broad.mit.edu	37	13	114535377	114535377	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr13:114535377G>A	uc001vud.2	-	10	1191	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	GAS6_uc001vug.2_Silent_p.I47I|GAS6_uc001vuf.2_Silent_p.I73I	NM_000820	NP_000811	Q14393	GAS6_HUMAN	growth arrest-specific 6 isoform 1 precursor	389	Laminin G-like 1.				cell proliferation|leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|post-translational protein modification|proteolysis|regulation of growth	endoplasmic reticulum lumen|extracellular space|Golgi lumen|platelet alpha granule lumen	calcium ion binding|receptor agonist activity			central_nervous_system(4)	4	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0176)|all_epithelial(44;0.0104)|all_lung(25;0.0249)|Lung NSC(25;0.0908)|Breast(118;0.188)				GGGCCAGCACGATCCAGGTGC	0.657													13	5					0	0	0.001855	0	0
OR4M1	441670	broad.mit.edu	37	14	20249364	20249364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:20249364G>A	uc010tku.1	+	1	883	c.883G>A	c.(883-885)GAA>AAA	p.E295K		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GAGAAACAAGGAAGTAAAGGC	0.358													17	28					0	0	0.000743	0	0
OR4N2	390429	broad.mit.edu	37	14	20295610	20295610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:20295610G>A	uc010tkv.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCAGGGAAATGGAAAGCGAGA	0.373													30	37					0	0	0.002096	0	0
OR4K1	79544	broad.mit.edu	37	14	20403841	20403841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:20403841G>A	uc001vwj.1	+	1	16	c.16G>A	c.(16-18)GAA>AAA	p.E6K		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TCACACAAATGAATCGATGGT	0.343													79	128					0	0	0.003610	0	0
OR4K1	79544	broad.mit.edu	37	14	20404664	20404664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:20404664C>T	uc001vwj.1	+	1	839	c.839C>T	c.(838-840)CCC>CTC	p.P280L		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTTTGTACTCCCTTGTTGAAC	0.418													38	48					0	0	0.005524	0	0
OR4K13	390433	broad.mit.edu	37	14	20502373	20502373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:20502373G>A	uc010tkz.1	-	1	545	c.545C>T	c.(544-546)CCC>CTC	p.P182L		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AATCACAAGGGGAAGGTCACA	0.473													23	46					0	0	0.002780	0	0
OR4K13	390433	broad.mit.edu	37	14	20502407	20502407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:20502407G>A	uc010tkz.1	-	1	511	c.511C>T	c.(511-513)CCC>TCC	p.P171S		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		ATAACATTGGGACCACAGAAG	0.483													31	56					0	0	0.002096	0	0
OR4K13	390433	broad.mit.edu	37	14	20502633	20502633	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:20502633C>T	uc010tkz.1	-	1	285	c.285G>A	c.(283-285)TGG>TGA	p.W95*		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AATAACATCCCCACCATGAGA	0.458													33	35					0	0	0.002836	0	0
OR4K13	390433	broad.mit.edu	37	14	20502725	20502725	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:20502725T>C	uc010tkz.1	-	1	193	c.193A>G	c.(193-195)AAC>GAC	p.N65D		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		CAGGAGAGGTTGCTAAGCAGA	0.458													19	21					0	0	0.002299	0	0
OR6S1	341799	broad.mit.edu	37	14	21109286	21109286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:21109286G>A	uc001vxv.1	-	1	565	c.565C>T	c.(565-567)CGC>TGC	p.R189C		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		CAAGCCAGGCGGAGCAGTGGG	0.572													13	27					0	0	0.001368	0	0
OR6S1	341799	broad.mit.edu	37	14	21109685	21109685	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:21109685G>A	uc001vxv.1	-	1	166	c.166C>T	c.(166-168)CGA>TGA	p.R56*		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		GTCTGTAGTCGAGTATCAGCC	0.453													24	32					0	0	0.002780	0	0
NDRG2	57447	broad.mit.edu	37	14	21486622	21486622	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:21486622G>A	uc001vyy.2	-	14	1005	c.855C>T	c.(853-855)TTC>TTT	p.F285F	NDRG2_uc010tll.1_Silent_p.F281F|NDRG2_uc001vyt.2_Silent_p.F198F|NDRG2_uc001vyu.2_Silent_p.F242F|NDRG2_uc001vyv.2_Silent_p.F271F|NDRG2_uc001vyw.2_Silent_p.F271F|NDRG2_uc001vzb.2_Silent_p.F225F|NDRG2_uc001vyx.2_Silent_p.F285F|NDRG2_uc001vza.2_Silent_p.F271F|NDRG2_uc001vyz.2_Silent_p.F271F|NDRG2_uc001vzc.2_Intron|NDRG2_uc001vze.2_Silent_p.F285F|NDRG2_uc001vzd.2_Silent_p.F285F|NDRG2_uc001vzg.2_Silent_p.F271F|NDRG2_uc001vzf.2_Silent_p.F271F|NDRG2_uc010aig.2_Silent_p.F274F	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	285					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		TGACCTTGAGGAACGAGGTCT	0.577													19	33					0	0	0.001882	0	0
OR5AU1	390445	broad.mit.edu	37	14	21623811	21623811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:21623811G>A	uc010tlp.1	-	1	374	c.374C>T	c.(373-375)TCC>TTC	p.S125F		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	125	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		AACCGTGGAGGAGTAGCAGAA	0.517													19	33					0	0	0.002299	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21795943	21795943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:21795943G>A	uc001wag.2	+	17	2872	c.2872G>A	c.(2872-2874)GAA>AAA	p.E958K	RPGRIP1_uc001wah.2_Missense_Mutation_p.E600K|RPGRIP1_uc001wai.2_Missense_Mutation_p.E284K|RPGRIP1_uc001wak.2_Missense_Mutation_p.E433K|RPGRIP1_uc010aim.2_Missense_Mutation_p.E341K|RPGRIP1_uc001wal.2_Missense_Mutation_p.E317K|RPGRIP1_uc001wam.2_Missense_Mutation_p.E275K	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	958	Interaction with RPGR.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		ATCTGAAGAGGAAAAGGCTTC	0.463													4	13					0	0	0.000602	0	0
SALL2	6297	broad.mit.edu	37	14	21992346	21992346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:21992346G>A	uc001wbe.2	-	2	1798	c.1516C>T	c.(1516-1518)CCT>TCT	p.P506S	SALL2_uc010tly.1_Missense_Mutation_p.P504S|SALL2_uc010tlz.1_Missense_Mutation_p.P369S|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.P371S|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	506							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		TTGAAAGCAGGGAGTCCTGGA	0.562													4	22					0	0	0.000248	0	0
Unknown	0	broad.mit.edu	37	14	22090560	22090560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:22090560G>A	uc001wbi.2	+	2	212	c.199G>A	c.(199-201)GAT>AAT	p.D67N						SubName: Full=Putative uncharacterized protein ENSP00000374929;																		CCAGCAACATGATGGCGGAGC	0.483													40	73					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	14	22337365	22337365	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:22337365C>T	uc010tmf.1	+	2	238	c.159C>T	c.(157-159)TTC>TTT	p.F53F	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Silent_p.F52F|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		CAAACTACTTCCCTTGGTATA	0.438													72	89					0	0	0.003610	0	0
LRP10	26020	broad.mit.edu	37	14	23346335	23346335	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:23346335C>T	uc001whd.2	+	7	2294	c.1741C>T	c.(1741-1743)CAG>TAG	p.Q581*	LRP10_uc001whe.2_Intron	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	581	Cytoplasmic (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		GGCCAGATCCCAGGTCACACC	0.692													15	20					0	0	0.000958	0	0
REM2	161253	broad.mit.edu	37	14	23354069	23354069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:23354069C>T	uc001whf.1	+	2	355	c.290C>T	c.(289-291)TCG>TTG	p.S97L	REM2_uc010tnd.1_Missense_Mutation_p.S89L	NM_173527	NP_775798	Q8IYK8	REM2_HUMAN	rad and gem related GTP binding protein 2	97					regulation of transcription, DNA-dependent|small GTPase mediated signal transduction	intracellular|plasma membrane	ATP binding|GTP binding|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.012)		TCCTCTGGCTCGTCTGACTCC	0.612													21	39					0	0	0.001882	0	0
ACIN1	22985	broad.mit.edu	37	14	23530347	23530347	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:23530347G>A	uc001wit.3	-	18	3973	c.3645C>T	c.(3643-3645)TTC>TTT	p.F1215F	ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_Silent_p.F457F|ACIN1_uc001wiq.3_Silent_p.F457F|ACIN1_uc001wir.3_Silent_p.F488F|ACIN1_uc001wis.3_Silent_p.F896F|ACIN1_uc010akg.2_Silent_p.F1202F	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	1215	Arg/Asp/Glu/Lys-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		TGGTCTTTCGGAAAAGGTCAT	0.547													44	10					0	0	0.003610	0	0
SLC7A8	23428	broad.mit.edu	37	14	23600757	23600757	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:23600757G>A	uc001wiz.2	-	8	1752	c.1026C>T	c.(1024-1026)TTC>TTT	p.F342F	SLC7A8_uc001wiw.2_5'Flank|SLC7A8_uc001wix.2_Silent_p.F139F|SLC7A8_uc010tnk.1_Silent_p.F118F|SLC7A8_uc010tnl.1_Silent_p.F237F|SLC7A8_uc001wiy.2_RNA|SLC7A8_uc010akj.2_Intron	NM_012244	NP_036376	Q9UHI5	LAT2_HUMAN	solute carrier family 7 (cationic amino acid	342					blood coagulation|cellular amino acid metabolic process|leukocyte migration|metal ion homeostasis|response to toxin	basolateral plasma membrane|cytoplasm|integral to plasma membrane	neutral amino acid transmembrane transporter activity|organic cation transmembrane transporter activity|peptide antigen binding|protein binding|toxin transporter activity			ovary(1)	1	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00809)	L-Alanine(DB00160)|L-Glutamine(DB00130)|L-Phenylalanine(DB00120)	GGGCTCCAGCGAAGAACAGCC	0.607													19	1					0	0	0.001216	0	0
MYH7	4625	broad.mit.edu	37	14	23884284	23884284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:23884284C>T	uc001wjx.2	-	37	5585	c.5479G>A	c.(5479-5481)GAG>AAG	p.E1827K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1827	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGCTCGGCCTCCAGCTCATTC	0.657													77	11					0	0	0.003610	0	0
MYH7	4625	broad.mit.edu	37	14	23886092	23886092	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:23886092G>A	uc001wjx.2	-	33	4735	c.4629C>T	c.(4627-4629)GCC>GCT	p.A1543A		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1543	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCTCCTCCAGGGCTGACTGCA	0.577													40	12					0	0	0.001706	0	0
ADCY4	196883	broad.mit.edu	37	14	24800553	24800553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:24800553G>A	uc001wov.2	-	5	685	c.679C>T	c.(679-681)CTC>TTC	p.L227F	ADCY4_uc001wow.2_Missense_Mutation_p.L227F|ADCY4_uc010toh.1_5'UTR|ADCY4_uc001wox.2_Missense_Mutation_p.L227F|ADCY4_uc001woy.2_Missense_Mutation_p.L227F	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	227	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		ATGGACAAGAGAAGGTGTTCC	0.577													20	5					0	0	0.002299	0	0
NFATC4	4776	broad.mit.edu	37	14	24845739	24845740	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:24845739_24845740CC>TT	uc001wpc.2	+	9	2617_2618	c.2296_2297CC>TT	c.(2296-2298)CCT>TTT	p.P766F	NFATC4_uc010tok.1_Missense_Mutation_p.P829F|NFATC4_uc010tol.1_Missense_Mutation_p.P829F|NFATC4_uc010alr.2_Missense_Mutation_p.P829F|NFATC4_uc010tom.1_Missense_Mutation_p.P779F|NFATC4_uc010ton.1_Missense_Mutation_p.P779F|NFATC4_uc010too.1_Missense_Mutation_p.P779F|NFATC4_uc010alt.2_Missense_Mutation_p.P798F|NFATC4_uc010top.1_Missense_Mutation_p.P798F|NFATC4_uc010toq.1_Missense_Mutation_p.P798F|NFATC4_uc010tor.1_Missense_Mutation_p.P766F|NFATC4_uc010tos.1_Missense_Mutation_p.P696F|NFATC4_uc010tot.1_Missense_Mutation_p.P754F|NFATC4_uc010tou.1_Missense_Mutation_p.P696F|NFATC4_uc010tov.1_Missense_Mutation_p.P754F|NFATC4_uc010tow.1_Missense_Mutation_p.P696F|NFATC4_uc010alv.2_Missense_Mutation_p.P754F|NFATC4_uc010tox.1_Missense_Mutation_p.P696F|NFATC4_uc001wpd.2_Missense_Mutation_p.P301F|NFATC4_uc010toy.1_Missense_Mutation_p.P301F|NFATC4_uc010toz.1_Missense_Mutation_p.P301F|NFATC4_uc010tpa.1_Missense_Mutation_p.P54F|NFATC4_uc010tpb.1_Missense_Mutation_p.P54F	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	766	Pro-rich.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		GCGGATGTTCCCTGAGACTAGG	0.619													17	7					0	0	0.004672	0	0
GZMH	2999	broad.mit.edu	37	14	25077614	25077614	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:25077614C>G	uc001wpr.1	-	2	105	c.60G>C	c.(58-60)GAG>GAC	p.E20D	GZMH_uc010aly.1_Missense_Mutation_p.E20D|GZMH_uc010alz.1_Missense_Mutation_p.E20D	NM_033423	NP_219491	P20718	GRAH_HUMAN	granzyme H precursor	20					apoptosis|cytolysis|proteolysis	cytoplasm	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(265;0.0267)		CCCCGATGATCTCCTCTGAAA	0.537													63	12					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	14	28733799	28733799	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:28733799C>T	uc001wqd.2	+	1	180	c.40C>T	c.(40-42)CTG>TTG	p.L14L						SubName: Full=cDNA FLJ60537, highly similar to BCL2/adenovirus E1B 19 kDa protein-interacting protein 3;																		GGAGGAGAGCCTGCAGGGCTC	0.577													15	4					0	0	0.003163	0	0
AKAP6	9472	broad.mit.edu	37	14	33291898	33291898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:33291898G>A	uc001wrq.2	+	13	5049	c.4879G>A	c.(4879-4881)GAA>AAA	p.E1627K		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1627	Ser-rich.				protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		CTCAGTTGGTGAACTAAGTAA	0.403													42	9					0	0	0.001287	0	0
BAZ1A	11177	broad.mit.edu	37	14	35264087	35264087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:35264087G>A	uc001wsk.2	-	11	1799	c.1231C>T	c.(1231-1233)CCA>TCA	p.P411S	BAZ1A_uc001wsl.2_Missense_Mutation_p.P411S	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	411					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		GTTGGTTCTGGAAGTTCCTGA	0.353													55	6					0	0	0.003610	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36103909	36103909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:36103909G>A	uc001wti.2	-	32	4739	c.4348C>T	c.(4348-4350)CCC>TCC	p.P1450S	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Missense_Mutation_p.P1450S|RALGAPA1_uc010tpv.1_Missense_Mutation_p.P1463S|RALGAPA1_uc010tpw.1_Missense_Mutation_p.P1497S	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1450	Minimal domain that binds to TCF3/E12 (By similarity).				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						AGGCTCATGGGAAAATACCTT	0.403													20	7					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	14	36840634	36840634	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:36840634T>C	uc001wtp.2	+	1	265	c.16T>C	c.(16-18)TTT>CTT	p.F6L		NM_199286	NP_954980			stella																		CCCATCACAGTTTAATCCAAC	0.478													22	2					0	0	0.003954	0	0
MIA2	117153	broad.mit.edu	37	14	39716574	39716574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:39716574G>A	uc001wux.2	+	4	990	c.796G>A	c.(796-798)GAA>AAA	p.E266K	MIA2_uc010amy.1_Missense_Mutation_p.E197K	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	266						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TGACCTAGAGGAATTAAATAA	0.388													28	9					0	0	0.005443	0	0
MDGA2	161357	broad.mit.edu	37	14	47351311	47351311	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:47351311G>A	uc001wwj.3	-	11	2341	c.2145C>T	c.(2143-2145)GTC>GTT	p.V715V	MDGA2_uc001wwh.3_5'UTR|MDGA2_uc001wwi.3_Silent_p.V486V|MDGA2_uc010ani.2_Silent_p.V275V	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	715					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						GAGTCAGTCGGACTTCATAAG	0.333													25	3					0	0	0.004656	0	0
C14orf138	79609	broad.mit.edu	37	14	50576425	50576425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:50576425G>A	uc001wxo.1	-	6	709	c.682C>T	c.(682-684)CCA>TCA	p.P228S	C14orf138_uc001wxn.1_RNA|C14orf138_uc001wxp.1_Missense_Mutation_p.P193S|C14orf138_uc001wxq.1_RNA	NM_024558	NP_078834	Q9H867	MT21D_HUMAN	hypothetical protein LOC79609 isoform a	228							methyltransferase activity				0	all_epithelial(31;0.000822)|Breast(41;0.0065)					CTTCACGATGGAAATTTCTAT	0.338													21	5					0	0	0.003330	0	0
ATL1	51062	broad.mit.edu	37	14	51095121	51095121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:51095121G>A	uc001wyf.3	+	12	1733	c.1492G>A	c.(1492-1494)GGA>AGA	p.G498R	ATL1_uc001wyd.3_Missense_Mutation_p.G498R|ATL1_uc001wye.3_Missense_Mutation_p.G498R	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	498	Cytoplasmic.|Sufficient for membrane association.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						CCGGTACTCTGGAGAATACCG	0.438													18	26					0	0	0.004990	0	0
KTN1	3895	broad.mit.edu	37	14	56134036	56134036	+	Silent	SNP	C	T	T	rs144185879		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:56134036C>T	uc001xcb.2	+	35	3557	c.3255C>T	c.(3253-3255)GTC>GTT	p.V1085V	KTN1_uc001xce.2_Silent_p.V1056V|KTN1_uc001xcc.2_Silent_p.V1085V|KTN1_uc001xcd.2_Silent_p.V1062V|KTN1_uc010trb.1_Silent_p.V1085V|KTN1_uc001xcf.1_Silent_p.V1062V|KTN1_uc010aoq.2_Silent_p.V351V|KTN1_uc010trc.1_Silent_p.V90V|KTN1_uc001xcg.2_Silent_p.V46V	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	1085	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						AGGTGTCTGTCCCTTCTAATT	0.358			T	RET	papillary thryoid								69	18					0	0	0.003610	0	0
SLC35F4	341880	broad.mit.edu	37	14	58063609	58063609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:58063609C>T	uc001xdb.1	-	1	7	c.7G>A	c.(7-9)GAA>AAA	p.E3K	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_5'UTR	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						AAGAGTAGTTCATCCATGACA	0.448													30	2					0	0	0.001512	0	0
C14orf39	317761	broad.mit.edu	37	14	60903606	60903606	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:60903606A>T	uc001xez.3	-	18	1831	c.1721T>A	c.(1720-1722)TTT>TAT	p.F574Y	C14orf39_uc010apo.2_Missense_Mutation_p.F285Y	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	574										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		GGAAGATGAAAAACCTTTTAA	0.303													153	40					0	0	0.003610	0	0
C14orf39	317761	broad.mit.edu	37	14	60928118	60928118	+	Silent	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:60928118T>G	uc001xez.3	-	13	1181	c.1071A>C	c.(1069-1071)CCA>CCC	p.P357P	C14orf39_uc010apo.2_Silent_p.P68P	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	357										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		ATTGTTTCTGTGGGGTTAACA	0.274													33	9					0	0	0.003271	0	0
SYT16	83851	broad.mit.edu	37	14	62536444	62536444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:62536444G>A	uc001xfu.1	+	2	844	c.647G>A	c.(646-648)GGA>GAA	p.G216E	SYT16_uc010tsd.1_Missense_Mutation_p.G216E	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	216										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		TCTGAGAAAGGAAAGCAGACA	0.488													62	12					0	0	0.003610	0	0
KCNH5	27133	broad.mit.edu	37	14	63174765	63174765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:63174765C>T	uc001xfx.2	-	11	2479	c.2428G>A	c.(2428-2430)GGG>AGG	p.G810R	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	810	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CGCAGCCACCCTTTTCCATTT	0.458													58	19					0	0	0.003610	0	0
KCNH5	27133	broad.mit.edu	37	14	63174776	63174776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:63174776C>T	uc001xfx.2	-	11	2468	c.2417G>A	c.(2416-2418)GGA>GAA	p.G806E	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	806	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTTTCCATTTCCATTCTTCAT	0.458													56	15					0	0	0.003610	0	0
KCNH5	27133	broad.mit.edu	37	14	63447650	63447650	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:63447650C>T	uc001xfx.2	-	6	933	c.882G>A	c.(880-882)GTG>GTA	p.V294V	KCNH5_uc001xfy.2_Silent_p.V294V|KCNH5_uc001xfz.1_Silent_p.V236V|KCNH5_uc001xga.2_Silent_p.V236V	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	294	Helical; Name=Segment S3; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GCAGATCGATCACAAACCAAG	0.408													51	4					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	14	66480314	66480314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:66480314C>T	uc001xit.2	-	1	319	c.194G>A	c.(193-195)AGG>AAG	p.R65K						SubName: Full=Nuclease sensitive element binding protein-1;																		ATATCCGTTCCTTACATTGAA	0.532													36	4					0	0	0.003610	0	0
DCAF5	8816	broad.mit.edu	37	14	69521726	69521726	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:69521726G>A	uc001xkp.2	-	9	1896	c.1677C>T	c.(1675-1677)TCC>TCT	p.S559S	DCAF5_uc001xkq.2_Silent_p.S558S	NM_003861	NP_003852	Q96JK2	DCAF5_HUMAN	WD repeat domain 22	559						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)	2						TGGAACTGCTGGATTCATCTT	0.572													37	8					0	0	0.004878	0	0
EXD2	55218	broad.mit.edu	37	14	69707717	69707717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:69707717C>T	uc001xkt.2	+	11	2050	c.1391C>T	c.(1390-1392)TCC>TTC	p.S464F	EXD2_uc001xku.2_Missense_Mutation_p.S334F|EXD2_uc001xkv.2_Missense_Mutation_p.S589F|EXD2_uc001xkw.2_Missense_Mutation_p.S464F|EXD2_uc010aqt.2_Missense_Mutation_p.S589F|EXD2_uc010tte.1_Missense_Mutation_p.S589F|EXD2_uc001xky.2_Missense_Mutation_p.S464F	NM_018199	NP_060669	Q9NVH0	EXD2_HUMAN	exonuclease 3'-5' domain containing 2	464					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						TTCCTGGACTCCATGCAGCCC	0.602													29	5					0	0	0.001271	0	0
SMOC1	64093	broad.mit.edu	37	14	70461138	70461138	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:70461138G>A	uc001xls.1	+	7	858	c.605G>A	c.(604-606)TGG>TAG	p.W202*	SMOC1_uc001xlt.1_Nonsense_Mutation_p.W202*	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	202					cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		CCAACTCTATGGATTAAACAC	0.408													166	34					0	0	0.003610	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713473	70713473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:70713473G>A	uc010ttg.1	-	1	1046	c.395C>T	c.(394-396)TCA>TTA	p.S132L		NR_003951				SubName: Full=ADAM21-like protein;												0						ACTTATAAGTGAATTTTTTAT	0.383													63	12					0	0	0.003610	0	0
ADAM21	8747	broad.mit.edu	37	14	70924745	70924745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:70924745G>A	uc001xmd.2	+	1	529	c.529G>A	c.(529-531)GAG>AAG	p.E177K		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	177	Cysteine switch (By similarity).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TGGCTTAACAGAGAAGGAAGT	0.443													62	29					0	0	0.003610	0	0
TTC9	23508	broad.mit.edu	37	14	71137855	71137855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:71137855G>A	uc001xmi.2	+	3	995	c.652G>A	c.(652-654)GAA>AAA	p.E218K		NM_015351	NP_056166	Q92623	TTC9A_HUMAN	tetratricopeptide repeat domain 9	218							binding				0				all cancers(60;0.00545)|BRCA - Breast invasive adenocarcinoma(234;0.00747)|OV - Ovarian serous cystadenocarcinoma(108;0.0538)		CTCCCAGAGAGAAAAAGAAGC	0.557													11	5					0	0	0.001368	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055770	72055770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:72055770C>T	uc001xms.2	+	2	1529	c.1181C>T	c.(1180-1182)TCC>TTC	p.S394F	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S394F|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S394F|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S394F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	394					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GACCTGAATTCCAAAGGAAGC	0.517													53	6					0	0	0.003610	0	0
PROX2	283571	broad.mit.edu	37	14	75323699	75323699	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:75323699C>T	uc001xqr.1	-	3	1414	c.1414_splice	c.e3-1	p.F472_splice	uc001xqp.1_5'Flank|PROX2_uc001xqq.1_Splice_Site_p.F171_splice	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2						multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		AGCGGTTGAACTGTACAAACA	0.448													120	28					0	0	0.003610	0	0
JDP2	122953	broad.mit.edu	37	14	75928189	75928189	+	Nonsense_Mutation	SNP	C	T	T	rs3178799		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:75928189C>T	uc010asj.2	+	3	329	c.262C>T	c.(262-264)CGA>TGA	p.R88*	JDP2_uc010tvb.1_Nonsense_Mutation_p.R88*|JDP2_uc010tvc.1_Nonsense_Mutation_p.R88*|JDP2_uc001xrq.2_Nonsense_Mutation_p.R99*	NM_001135047	NP_001128519	Q8WYK2	JDP2_HUMAN	Jun dimerization protein 2 isoform a	88	Basic motif.					nucleus	sequence-specific DNA binding				0				BRCA - Breast invasive adenocarcinoma(234;0.0296)		CGCAGCAGCCCGATGCCGGAA	0.592													15	5					0	0	0.000743	0	0
TMEM63C	57156	broad.mit.edu	37	14	77685307	77685307	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:77685307G>A	uc001xtf.2	+	3	362	c.150_splice	c.e3+1	p.V50_splice	TMEM63C_uc010asq.1_Splice_Site_p.V50_splice	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C							integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		CCTGTGGGTGGTGAGTCCTGG	0.592													4	1					0	0	0.000248	0	0
TMEM63C	57156	broad.mit.edu	37	14	77705054	77705054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:77705054G>A	uc001xtf.2	+	10	881	c.669G>A	c.(667-669)ATG>ATA	p.M223I	TMEM63C_uc010asq.1_Missense_Mutation_p.M223I	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	223						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		GGACACTAATGATCACCTATG	0.473													18	6					0	0	0.002299	0	0
TMEM63C	57156	broad.mit.edu	37	14	77710775	77710775	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:77710775C>T	uc001xtf.2	+	16	1637	c.1425C>T	c.(1423-1425)GCC>GCT	p.A475A	TMEM63C_uc010asq.1_Silent_p.A475A	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	475	Helical; (Potential).					integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		ACTTCTCCGCCTTCCTCGAGG	0.622													57	17					0	0	0.003610	0	0
VIPAR	63894	broad.mit.edu	37	14	77908908	77908908	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:77908908G>A	uc001xtt.1	-	11	1067	c.729C>T	c.(727-729)CTC>CTT	p.L243L	VIPAR_uc001xtu.1_Silent_p.L243L|VIPAR_uc010tvj.1_Silent_p.L194L|VIPAR_uc001xtv.1_Silent_p.L243L	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	243					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						CTTACCTGAAGAGGTCTAAAA	0.433													114	36					0	0	0.003610	0	0
NRXN3	9369	broad.mit.edu	37	14	79117583	79117583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:79117583G>A	uc001xun.2	+	3	507	c.16G>A	c.(16-18)GAC>AAC	p.D6N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.D140N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	379	Laminin G-like 2.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GGGCTCGGACGACTTCTTCTA	0.522													71	11					0	0	0.003610	0	0
NRXN3	9369	broad.mit.edu	37	14	79117588	79117588	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:79117588C>T	uc001xun.2	+	3	512	c.21C>T	c.(19-21)TTC>TTT	p.F7F	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.F141F	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	380	Laminin G-like 2.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CGGACGACTTCTTCTATGTAG	0.522													71	9					0	0	0.003610	0	0
NRXN3	9369	broad.mit.edu	37	14	79423658	79423658	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:79423658G>A	uc001xun.2	+	8	1721	c.1230G>A	c.(1228-1230)CGG>CGA	p.R410R	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.R535R	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	783	Laminin G-like 4.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GGGTGGTGCGGAGAGGAAAAA	0.488													72	18					0	0	0.003610	0	0
TSHR	7253	broad.mit.edu	37	14	81534600	81534601	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:81534600_81534601AC>TT	uc001xvd.1	+	3	401_402	c.245_246AC>TT	c.(244-246)TAC>TTT	p.Y82F	TSHR_uc001xvb.1_Missense_Mutation_p.Y82F|TSHR_uc001xvc.2_Missense_Mutation_p.Y82F|TSHR_uc010tvs.1_Missense_Mutation_p.Y82F	NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	82	Extracellular (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	ACATTCAGCTACGTATCTATAG	0.356			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						39	6					0	0	0.004672	0	0
KCNK10	54207	broad.mit.edu	37	14	88652128	88652128	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:88652128C>T	uc001xwo.2	-	7	1825	c.1368G>A	c.(1366-1368)AGG>AGA	p.R456R	KCNK10_uc001xwm.2_Silent_p.R461R|KCNK10_uc001xwn.2_Silent_p.R461R	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	456	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						CCTTGTTTTTCCTCTTGGTGA	0.537													78	14					0	0	0.003610	0	0
KCNK10	54207	broad.mit.edu	37	14	88729757	88729757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:88729757G>A	uc001xwo.2	-	2	633	c.176C>T	c.(175-177)TCC>TTC	p.S59F	KCNK10_uc001xwm.2_Missense_Mutation_p.S64F|KCNK10_uc001xwn.2_Missense_Mutation_p.S64F	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	59	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GCCCCCTTGGGAGGTGCCTTC	0.617													51	14					0	0	0.003610	0	0
EML5	161436	broad.mit.edu	37	14	89178744	89178744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:89178744C>T	uc001xxg.2	-	11	1714	c.1528G>A	c.(1528-1530)GGA>AGA	p.G510R	EML5_uc001xxh.1_5'UTR	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	510						cytoplasm|microtubule				ovary(3)	3						GGCCAAATTCCATTTACTTCA	0.343													46	14					0	0	0.003610	0	0
EML5	161436	broad.mit.edu	37	14	89181462	89181462	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:89181462T>A	uc001xxg.2	-	10	1451	c.1265A>T	c.(1264-1266)TAC>TTC	p.Y422F	EML5_uc001xxh.1_5'UTR	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	422	WD 8.					cytoplasm|microtubule				ovary(3)	3						AACAGCAAGGTAAGTTCCATC	0.368													22	5					0	0	0.002780	0	0
TTC7B	145567	broad.mit.edu	37	14	91156014	91156014	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:91156014A>T	uc001xyp.2	-	7	942	c.820T>A	c.(820-822)TGT>AGT	p.C274S	TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	274							binding			ovary(2)	2		Melanoma(154;0.222)				CTCTGCTCACACATACCCCGC	0.493													15	8					0	0	0.004007	0	0
C14orf159	80017	broad.mit.edu	37	14	91636449	91636449	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:91636449C>T	uc001xzb.2	+	7	1128	c.360C>T	c.(358-360)TTC>TTT	p.F120F	C14orf159_uc010atv.1_Intron|C14orf159_uc001xyy.2_Silent_p.F120F|C14orf159_uc001xyx.2_Silent_p.F120F|C14orf159_uc001xyw.2_Silent_p.F120F|C14orf159_uc001xzc.2_Silent_p.F120F|C14orf159_uc001xza.2_Silent_p.F120F|C14orf159_uc001xyv.2_Silent_p.F120F|C14orf159_uc001xyz.2_Silent_p.F4F|C14orf159_uc010twj.1_Silent_p.F120F|C14orf159_uc001xze.2_Silent_p.F120F	NM_001102366	NP_001095836	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform a	120						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)		TGGTGGCCTTCTTCCTGGGCT	0.622													33	11					0	0	0.002836	0	0
GPR68	8111	broad.mit.edu	37	14	91700725	91700725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:91700725C>T	uc001xzg.2	-	2	1011	c.670G>A	c.(670-672)GAC>AAC	p.D224N	GPR68_uc001xzh.2_Missense_Mutation_p.D234N	NM_003485	NP_003476	Q15743	OGR1_HUMAN	G protein-coupled receptor 68	224	Cytoplasmic (Potential).				inflammatory response	integral to plasma membrane	G-protein coupled receptor activity			kidney(1)	1		all_cancers(154;0.0555)		COAD - Colon adenocarcinoma(157;0.21)		TGGATCTGGTCCTTGCGGCTC	0.677													8	2					0	0	0.004482	0	0
CCDC88C	440193	broad.mit.edu	37	14	91774810	91774810	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:91774810T>A	uc010aty.2	-	17	2990	c.2891A>T	c.(2890-2892)AAT>ATT	p.N964I		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	964	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TGCTGATTCATTTCTGCCCTC	0.408													55	70					0	0	0.003610	0	0
CCDC88C	440193	broad.mit.edu	37	14	91806251	91806251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:91806251C>T	uc010aty.2	-	7	700	c.601G>A	c.(601-603)GAC>AAC	p.D201N	CCDC88C_uc010twk.1_Missense_Mutation_p.D165N	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	201					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TCCCGCTGGTCGATGAGCCTC	0.667													7	2					0	0	0.001984	0	0
CATSPERB	79820	broad.mit.edu	37	14	92159496	92159496	+	Missense_Mutation	SNP	G	A	A	rs139686935		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:92159496G>A	uc001xzs.1	-	9	945	c.805C>T	c.(805-807)CGT>TGT	p.R269C		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	269					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				GATGGATAACGAAGATCTTCA	0.323													85	20					0	0	0.003610	0	0
KIAA1409	57578	broad.mit.edu	37	14	94046624	94046624	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:94046624G>C	uc001ybv.1	+	16	2115	c.2032G>C	c.(2032-2034)GCA>CCA	p.A678P	KIAA1409_uc001ybs.1_Missense_Mutation_p.A678P	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	855						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGACGAAAAAGCAATCGAGTG	0.473													61	9					0	0	0.003610	0	0
KIAA1409	57578	broad.mit.edu	37	14	94052986	94052986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:94052986C>T	uc001ybv.1	+	18	2400	c.2317C>T	c.(2317-2319)CCG>TCG	p.P773S	KIAA1409_uc001ybs.1_Missense_Mutation_p.P773S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	950						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CCAACAGCTTCCGGTAACATT	0.348													20	7					0	0	0.002780	0	0
SERPINA10	51156	broad.mit.edu	37	14	94750463	94750463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:94750463C>T	uc001yct.2	-	5	1640	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K	SERPINA10_uc001ycu.3_Missense_Mutation_p.E392K	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	392					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GTGCCCCTTTCATCAACTTCA	0.418													30	2					0	0	0.002836	0	0
SERPINA6	866	broad.mit.edu	37	14	94780692	94780692	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:94780692A>G	uc001ycv.2	-	2	398	c.294T>C	c.(292-294)ACT>ACC	p.T98T	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	98					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CAGACCTCTCAGTGAGGTTGA	0.562													18	3					0	0	0.000958	0	0
CYP46A1	10858	broad.mit.edu	37	14	100172986	100172986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:100172986C>T	uc001ygo.2	+	6	446	c.446C>T	c.(445-447)TCC>TTC	p.S149F	CYP46A1_uc001ygn.1_Missense_Mutation_p.S111F|CYP46A1_uc001ygp.2_5'UTR	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	149					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				TTCTCCAGCTCCTTGGTTAGC	0.552													45	9					0	0	0.003610	0	0
MIR770	768222	broad.mit.edu	37	14	101318772	101318772	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:101318772G>A	hsa-mir-770|MI0005118	+			c.46G>A			MEG3_uc001yhy.2_Intron|MEG3_uc010txb.1_Intron|MEG3_uc010txc.1_Intron|MEG3_uc001yib.2_Intron|MEG3_uc010txd.1_Intron|MEG3_uc010txe.1_Intron|MEG3_uc001yic.2_Intron|MEG3_uc010txf.1_Intron|MEG3_uc010avz.1_Intron|MEG3_uc001yhw.2_Intron|MEG3_uc001yie.2_Intron|MEG3_uc001yhx.2_Intron|MEG3_uc010txg.1_Intron|MEG3_uc001yhz.2_Intron|MEG3_uc001yia.2_Intron|MEG3_uc010txh.1_Intron|MEG3_uc001yid.1_Intron|uc001yif.1_5'Flank																	0						AGGGCCACATGAGCTGGGCCT	0.597													28	8					0	0	0.002445	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102550183	102550183	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:102550183C>A	uc001yku.3	-	7	1475	c.1285G>T	c.(1285-1287)GAA>TAA	p.E429*	HSP90AA1_uc001ykv.3_Nonsense_Mutation_p.E551*|HSP90AA1_uc001ykw.1_Nonsense_Mutation_p.E250*|HSP90AA1_uc001ykx.1_Nonsense_Mutation_p.E418*	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	429					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	TCTTTATCTTCCGCCAGTTCA	0.328													44	14					3.05275e-18	5.30188e-18	0.003214	1	0
TECPR2	9895	broad.mit.edu	37	14	102964022	102964022	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:102964022G>A	uc001ylw.1	+	19	4195	c.4047G>A	c.(4045-4047)TGG>TGA	p.W1349*	TECPR2_uc010txx.1_Nonsense_Mutation_p.W512*	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	1349	TECPR 6.						protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GGGACTACTGGAAGAAAATTC	0.662													10	1					0	0	0.001368	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103400114	103400114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:103400114G>A	uc001ymi.1	-	37	5303	c.5071C>T	c.(5071-5073)CCC>TCC	p.P1691S		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1691					actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		GGGGAGTTGGGGCTCGGTGGG	0.662													6	2					0	0	0.001984	0	0
TDRD9	122402	broad.mit.edu	37	14	104515982	104515982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:104515982C>T	uc001yom.3	+	35	4042	c.4012C>T	c.(4012-4014)CCC>TCC	p.P1338S	TDRD9_uc001yon.3_Missense_Mutation_p.P885S	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	1338					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				GAAGATTGTTCCCAAGTGGCA	0.433													6	4					0	0	0.003080	0	0
INF2	64423	broad.mit.edu	37	14	105177966	105177966	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:105177966G>T	uc001ypb.2	+	16	2562	c.2419G>T	c.(2419-2421)GAA>TAA	p.E807*	INF2_uc010tyi.1_Nonsense_Mutation_p.E807*|INF2_uc001ypc.2_Nonsense_Mutation_p.E807*|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	807	FH2.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		CCCATTGCAGGAAGCGGAAAA	0.617													18	7					5.35356e-11	9.26573e-11	0.002780	1	0
AHNAK2	113146	broad.mit.edu	37	14	105409854	105409854	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:105409854G>A	uc010axc.1	-	7	12054	c.11934C>T	c.(11932-11934)TTC>TTT	p.F3978F	AHNAK2_uc001ypx.2_Silent_p.F3878F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3978						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CAGACACCCCGAACGACGGCA	0.617													155	22					0	0	0.003610	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414672	105414672	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:105414672G>A	uc010axc.1	-	7	7236	c.7116C>T	c.(7114-7116)TCC>TCT	p.S2372S	AHNAK2_uc001ypx.2_Silent_p.S2272S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2372						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCAGGTCAGCGGAAGGGGGCT	0.657													82	18					0	0	0.003610	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414677	105414677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:105414677G>A	uc010axc.1	-	7	7231	c.7111C>T	c.(7111-7113)CCT>TCT	p.P2371S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P2271S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2371						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCAGCGGAAGGGGGCTGAACG	0.662													82	19					0	0	0.003610	0	0
AHNAK2	113146	broad.mit.edu	37	14	105419259	105419259	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:105419259G>A	uc010axc.1	-	7	2649	c.2529C>T	c.(2527-2529)TTC>TTT	p.F843F	AHNAK2_uc001ypx.2_Silent_p.F743F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	843						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCGACACCCCGAATGATGGCA	0.617													173	41					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106173725	106173725	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106173725G>A	uc010tyt.1	-	3633		c.60173C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						CTCCTGCCGGGATGCCCAAGT	0.657													27	17					0	0	0.001271	0	0
ADAM6	8755	broad.mit.edu	37	14	106235647	106235647	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106235647G>A	uc010tyt.1	-	3617		c.58200C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CACGGAGCATGAGAAGATGTT	0.607													79	15					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106235852	106235852	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106235852C>T	uc010tyt.1	-	3617		c.57995G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCATCTCCTCCCGGGATGGG	0.642													83	32					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106237553	106237553	+	RNA	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106237553G>T	uc010tyt.1	-	3611		c.57330C>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GCTGCTGAGGGAGTAGAGTCC	0.612													35	9					2.49991e-28	4.35327e-28	0.003271	1	0
ADAM6	8755	broad.mit.edu	37	14	106452697	106452697	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106452697C>T	uc010tyt.1	-	1975		c.38059G>A								Parts of antibodies, mostly variable regions.												0						ACGGCCGTGTCGTCAGATCTC	0.557													102	25					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106471664	106471664	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106471664C>T	uc010tyt.1	-	1890		c.36530G>A								Parts of antibodies, mostly variable regions.												0						AAAAGAGGATCCTCCAGGTCC	0.557													8	3					0	0	0.000978	0	0
ADAM6	8755	broad.mit.edu	37	14	106714617	106714617	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106714617C>T	uc010tyt.1	-	645		c.18988G>A								Parts of antibodies, mostly variable regions.												0						TCAGGGACCCCCCAGGCTGTA	0.587													49	10					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106721409	106721409	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106721409C>T	uc010tyt.1	-	613		c.18643G>A								Parts of antibodies, mostly variable regions.												0						ATCTCTAGTTCTCCATTATTT	0.408													6	6					0	0	0.001984	0	0
ADAM6	8755	broad.mit.edu	37	14	106790991	106790991	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:106790991C>T	uc010tyt.1	-	386		c.14627G>A								Parts of antibodies, mostly variable regions.												0						ACAATGACTTCCCCTCACTGT	0.562													82	76					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	107048827	107048827	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:107048827C>T	uc010tyt.1	-	144		c.6763G>A								Parts of antibodies, mostly variable regions.												0						GAGACCCACTCCAGCCCCTTC	0.468													77	15					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	107131212	107131212	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr14:107131212G>A	uc010tyt.1	-	63		c.3298C>T								Parts of antibodies, mostly variable regions.												0						GGAGCCTGGCGGACCCAGCTC	0.413													53	17					0	0	0.003610	0	0
LOC646214	646214	broad.mit.edu	37	15	21936726	21936726	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:21936726G>A	uc010tzj.1	-	1		c.4014C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						AAATATTGGGGAAAGTGTCTC	0.418													18	61					0	0	0.000958	0	0
LOC646214	646214	broad.mit.edu	37	15	21937842	21937842	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:21937842G>A	uc010tzj.1	-	1		c.2898C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						GCATGCCAGTGAATTCTCCAG	0.433													30	152					0	0	0.002445	0	0
OR4M2	390538	broad.mit.edu	37	15	22368673	22368673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:22368673C>T	uc010tzu.1	+	1	98	c.98C>T	c.(97-99)TCC>TTC	p.S33F	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATATTTCTATCCTTCTATTTG	0.408													67	273					0	0	0.003610	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414147	22414147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:22414147C>T	uc001yuf.2	+	1	446	c.446C>T	c.(445-447)TCT>TTT	p.S149F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CGAGCGTCTTCTTCTGAGGCA	0.473													14	88					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	15	22440699	22440699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:22440699C>T	uc001yug.2	-	1	167	c.148G>A	c.(148-150)GGA>AGA	p.G50R						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		TTGTTACCTCCCCACACACGG	0.532													4	12					0	0	0.001984	0	0
CYFIP1	23191	broad.mit.edu	37	15	22933831	22933831	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:22933831G>A	uc001yus.2	+	8	854	c.750G>A	c.(748-750)GAG>GAA	p.E250E	CYFIP1_uc001yut.2_Silent_p.E250E|CYFIP1_uc010aya.1_Silent_p.E278E	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	250					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		ATTACTACGAGAACAGGATGT	0.512													30	61					0	0	0.002445	0	0
NDN	4692	broad.mit.edu	37	15	23931560	23931560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:23931560C>T	uc001ywk.2	-	1	891	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	269	MAGE.				negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		TTGGTGATTTCGCGGCTGGCC	0.572									Prader-Willi_syndrome				14	22					0	0	0.001855	0	0
C15orf2	23742	broad.mit.edu	37	15	24923015	24923015	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:24923015C>T	uc001ywo.2	+	1	2475	c.2001C>T	c.(1999-2001)TTC>TTT	p.F667F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	667					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTGTGTTTTCCTGAGCCTTC	0.502													34	39					0	0	0.003271	0	0
PAR-SN	347746	broad.mit.edu	37	15	25225189	25225189	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:25225189C>T	uc001yxa.1	+	5		c.590C>T			SNRPN_uc001ywz.1_RNA|PAR-SN_uc001yxc.2_5'Flank|PAR-SN_uc001yxb.3_5'Flank					Homo sapiens SNRPN upstream reading frame protein (SNURF) mRNA, complete cds.												0						AACCTGTTTTCAGGACCTTTT	0.378													4	5					0	0	0.000248	0	0
ATP10A	57194	broad.mit.edu	37	15	25924663	25924663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:25924663G>A	uc010ayu.2	-	21	4431	c.4325C>T	c.(4324-4326)TCC>TTC	p.S1442F		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1442	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		CGACCAGGAGGAAATCCAGTT	0.607													11	13					0	0	0.000673	0	0
GABRB3	2562	broad.mit.edu	37	15	26793000	26793000	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:26793000G>A	uc001zaz.2	-	9	1504	c.1362C>T	c.(1360-1362)ATC>ATT	p.I454I	GABRB3_uc010uae.1_Silent_p.I369I|GABRB3_uc001zba.2_Silent_p.I454I|GABRB3_uc001zbb.2_Silent_p.I510I	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	454	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	ATGGAAACACGATCCTGGACC	0.398													23	35					0	0	0.005443	0	0
GABRG3	2567	broad.mit.edu	37	15	27777932	27777932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:27777932G>A	uc001zbg.1	+	10	1475	c.1309G>A	c.(1309-1311)GAC>AAC	p.D437N		NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	437	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		TATTCACATAGACATCTTGGA	0.478													12	19					0	0	0.001855	0	0
HERC2	8924	broad.mit.edu	37	15	28424362	28424362	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:28424362A>G	uc001zbj.2	-	58	9051	c.8945T>C	c.(8944-8946)GTT>GCT	p.V2982A		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2982	RCC1 6.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GAACGAAGGAACCTTTATCTA	0.289													37	71					0	0	0.001485	0	0
HERC2	8924	broad.mit.edu	37	15	28491994	28491994	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:28491994G>A	uc001zbj.2	-	22	3391	c.3285C>T	c.(3283-3285)CTC>CTT	p.L1095L		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1095					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GCGTGCACAGGAGGGCTGTGT	0.483													22	38					0	0	0.004656	0	0
TJP1	7082	broad.mit.edu	37	15	30012097	30012097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:30012097G>A	uc001zcr.2	-	20	3362	c.2887C>T	c.(2887-2889)CCT>TCT	p.P963S	TJP1_uc010azl.2_Missense_Mutation_p.P951S|TJP1_uc001zcq.2_Intron|TJP1_uc001zcs.2_Intron	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	963					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		GAGGTGGAAGGAGCTGGGGTG	0.448													34	62					0	0	0.003271	0	0
RYR3	6263	broad.mit.edu	37	15	33765646	33765646	+	Silent	SNP	C	T	T	rs142065681	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:33765646C>T	uc001zhi.2	+	2	148	c.78C>T	c.(76-78)ATC>ATT	p.I26I	RYR3_uc010bar.2_Silent_p.I26I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	26	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCCAGTGCATCGCCACCATTC	0.557													39	62					0	0	0.001706	0	0
RYR3	6263	broad.mit.edu	37	15	33872249	33872249	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:33872249C>T	uc001zhi.2	+	13	1411	c.1341C>T	c.(1339-1341)ATC>ATT	p.I447I	RYR3_uc010bar.2_Silent_p.I447I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	447	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGGACTTGATCGCCTACTTCC	0.483													10	12					0	0	0.000443	0	0
CHRM5	1133	broad.mit.edu	37	15	34356319	34356319	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:34356319C>T	uc001zhk.1	+	3	2071	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	CHRM5_uc001zhl.1_Silent_p.F467F	NM_012125	NP_036257	P08912	ACM5_HUMAN	cholinergic receptor, muscarinic 5	467	Extracellular (By similarity).				cell proliferation|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;1.76e-08)		all cancers(64;4.82e-17)|GBM - Glioblastoma multiforme(113;2.58e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0262)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)	TTTCTACCTTCTGTGACAAGT	0.502													22	36					0	0	0.002299	0	0
LOC723972	723972	broad.mit.edu	37	15	35530205	35530205	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:35530205G>A	uc001ziy.2	+	1		c.679G>A				NR_003144				Homo sapiens hepatopoietin PCn127 mRNA, complete cds.												0						GCTCCGTGAAGAAGAAAGGGG	0.318													6	22					0	0	0.001984	0	0
SPRED1	161742	broad.mit.edu	37	15	38643766	38643766	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:38643766C>T	uc001zka.3	+	7	1571	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F		NM_152594	NP_689807	Q7Z699	SPRE1_HUMAN	sprouty-related protein 1 with EVH-1 domain	412	SPR.				inactivation of MAPK activity|multicellular organismal development	caveola|nucleus	stem cell factor receptor binding			ovary(2)|lung(2)|skin(1)	5		all_cancers(109;4.88e-13)|all_epithelial(112;1.83e-11)|Lung NSC(122;2.21e-09)|all_lung(180;4.64e-08)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(113;2.41e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CTTTGTCTTTCATTGTACCAT	0.488									Legius_syndrome				52	68					0	0	0.003610	0	0
THBS1	7057	broad.mit.edu	37	15	39874122	39874122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:39874122C>T	uc001zkh.2	+	2	243	c.64C>T	c.(64-66)CCA>TCA	p.P22S		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	22					activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CAACCGCATTCCAGGTGAGTT	0.602											OREG0023050	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	23					0	0	0.004007	0	0
THBS1	7057	broad.mit.edu	37	15	39874921	39874921	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:39874921A>T	uc001zkh.2	+	3	774	c.595A>T	c.(595-597)ATC>TTC	p.I199F		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	199	TSP N-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CAGACTCCGCATCGCAAAGGG	0.567													9	24					0	0	0.000443	0	0
THBS1	7057	broad.mit.edu	37	15	39874923	39874923	+	Silent	SNP	C	T	T	rs138250796		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:39874923C>T	uc001zkh.2	+	3	776	c.597C>T	c.(595-597)ATC>ATT	p.I199I		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	199	TSP N-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GACTCCGCATCGCAAAGGGGG	0.562													9	25					0	0	0.000443	0	0
THBS1	7057	broad.mit.edu	37	15	39880302	39880302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:39880302G>A	uc001zkh.2	+	9	1533	c.1354G>A	c.(1354-1356)GGT>AGT	p.G452S	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	452	TSP type-1 2.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	TGTGACATGTGGTGATGGTGT	0.532													29	46					0	0	0.002445	0	0
THBS1	7057	broad.mit.edu	37	15	39880355	39880355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:39880355G>A	uc001zkh.2	+	9	1586	c.1407G>A	c.(1405-1407)ATG>ATA	p.M469I	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	469	TSP type-1 2.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GCCCCCAGATGAACGGGAAAC	0.597													12	27					0	0	0.001855	0	0
THBS1	7057	broad.mit.edu	37	15	39885655	39885656	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:39885655_39885656GG>AA	uc001zkh.2	+	19	3232_3233	c.3053_3054GG>AA	c.(3052-3054)AGG>AAA	p.R1018K	THBS1_uc010bbi.2_Missense_Mutation_p.R490K	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	1018	TSP C-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	AACACCGAAAGGGACGATGACT	0.495													77	104					0	0	0.004672	0	0
FSIP1	161835	broad.mit.edu	37	15	39910272	39910272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:39910272C>T	uc001zki.2	-	11	1581	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	455								p.E455*(1)		ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		GTTTCTGATTCATTTAGCAAT	0.393													45	50					0	0	0.002852	0	0
GPR176	11245	broad.mit.edu	37	15	40093565	40093565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:40093565G>A	uc001zkj.1	-	3	2182	c.1316C>T	c.(1315-1317)CCT>CTT	p.P439L	GPR176_uc010uck.1_Missense_Mutation_p.P379L	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	439	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		AGGTTCCACAGGGGCTGCCGG	0.582													33	54					0	0	0.003271	0	0
BUB1B	701	broad.mit.edu	37	15	40500938	40500938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:40500938C>T	uc001zkx.3	+	16	2322	c.2110C>T	c.(2110-2112)CCT>TCT	p.P704S		NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	704					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		TCTTCAAATTCCTGAGAAACT	0.433			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				8	20					0	0	0.000443	0	0
PLCB2	5330	broad.mit.edu	37	15	40590442	40590442	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:40590442G>A	uc001zld.2	-	11	1438	c.1137C>T	c.(1135-1137)ACC>ACT	p.T379T	PLCB2_uc010bbo.2_Silent_p.T379T|PLCB2_uc010ucm.1_Silent_p.T379T	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	379	PI-PLC X-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		AGATGTCTGTGGTCATGGTGA	0.607													9	13					0	0	0.000978	0	0
BAHD1	22893	broad.mit.edu	37	15	40750727	40750728	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:40750727_40750728CC>TT	uc001zlu.2	+	2	135_136	c.64_65CC>TT	c.(64-66)CCC>TTC	p.P22F	BAHD1_uc001zlt.2_Missense_Mutation_p.P22F|BAHD1_uc010bbp.1_Missense_Mutation_p.P22F|BAHD1_uc001zlv.2_Missense_Mutation_p.P22F	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	22					heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		CCGCCGAGAGCCCCTGCAGATG	0.604													27	49					0	0	0.004672	0	0
PPP1R14D	54866	broad.mit.edu	37	15	41120715	41120715	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:41120715T>C	uc001zmy.2	-	1	193	c.125A>G	c.(124-126)CAC>CGC	p.H42R	PPP1R14D_uc001zmz.2_Missense_Mutation_p.H42R	NM_017726	NP_060196	Q9NXH3	PP14D_HUMAN	protein phosphatase 1, regulatory subunit 14D	42					regulation of phosphorylation	cytoplasm	protein phosphatase inhibitor activity				0		all_cancers(109;6.29e-14)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.88e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GGAGTCCGGGTGGGACTTGGA	0.602													20	23					0	0	0.001216	0	0
LTK	4058	broad.mit.edu	37	15	41797934	41797934	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:41797934G>A	uc001zoa.3	-	13	1852	c.1674C>T	c.(1672-1674)TTC>TTT	p.F558F	LTK_uc001zob.3_Silent_p.F497F|LTK_uc010ucx.1_Silent_p.F428F|LTK_uc010bcg.2_Silent_p.F256F	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	558	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		CCTCCATGAGGAAATCCAGCT	0.612										TSP Lung(18;0.14)			11	13					0	0	0.000978	0	0
MGA	23269	broad.mit.edu	37	15	42019419	42019419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:42019419C>T	uc010ucy.1	+	10	3653	c.3472C>T	c.(3472-3474)CCA>TCA	p.P1158S	MGA_uc010ucz.1_Missense_Mutation_p.P1158S	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1158						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TCGACATTACCCATTATGGGT	0.408													16	27					0	0	0.004007	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42111801	42111801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:42111801C>T	uc001zok.3	+	23	2738	c.2452C>T	c.(2452-2454)CCC>TCC	p.P818S	MAPKBP1_uc001zoj.3_Missense_Mutation_p.P812S|MAPKBP1_uc010bcj.2_Missense_Mutation_p.P319S|MAPKBP1_uc010bci.2_Missense_Mutation_p.P812S|MAPKBP1_uc010udb.1_Missense_Mutation_p.P651S|MAPKBP1_uc010bck.2_Missense_Mutation_p.P29S|MAPKBP1_uc010bcl.2_Missense_Mutation_p.P319S	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	818								p.P812S(1)		central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		AGCCTCGGTCCCCAGCCCAGC	0.612													21	39					0	0	0.004656	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42287671	42287671	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:42287671G>A	uc001zow.1	-	11	1047	c.1047C>T	c.(1045-1047)GCC>GCT	p.A349A	PLA2G4E_uc010udc.1_5'UTR|PLA2G4E_uc001zov.1_Silent_p.A2A	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	366	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		CACCCCCAGTGGCCATGATGG	0.572													7	13					0	0	0.004482	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42363514	42363514	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:42363514C>T	uc001zox.2	-	17	1778	c.1683G>A	c.(1681-1683)GAG>GAA	p.E561E		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	561	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		GGGGCTCCTTCTCTGAAGCCA	0.597													8	11					0	0	0.000443	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42364024	42364024	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:42364024G>A	uc001zox.2	-	15	1616	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	507	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		GCCGTCCCATGAAGAACTCGG	0.617													6	21					0	0	0.003080	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42364501	42364501	+	Silent	SNP	C	T	T	rs143657689	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:42364501C>T	uc001zox.2	-	14	1502	c.1407G>A	c.(1405-1407)GAG>GAA	p.E469E		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	469	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		CCAGATTGTTCTCTTTGACAT	0.577													41	78					0	0	0.003610	0	0
HAUS2	55142	broad.mit.edu	37	15	42858899	42858899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:42858899C>T	uc001zqe.2	+	6	653	c.593C>T	c.(592-594)TCG>TTG	p.S198L	HAUS2_uc010udi.1_Missense_Mutation_p.S167L|HAUS2_uc001zqf.2_Missense_Mutation_p.S104L	NM_018097	NP_060567	Q9NVX0	HAUS2_HUMAN	centrosomal protein 27kDa isoform 1	198					cell division|centrosome organization|G2/M transition of mitotic cell cycle|mitosis|spindle assembly	centrosome|cytosol|HAUS complex|microtubule|spindle					0						AACGAAGTTTCGTCTTGTATC	0.348													15	18					0	0	0.002450	0	0
UBR1	197131	broad.mit.edu	37	15	43339380	43339380	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:43339380G>A	uc001zqq.2	-	14	1713	c.1647C>T	c.(1645-1647)TTC>TTT	p.F549F	UBR1_uc010udk.1_Silent_p.F549F	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	549					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		ACCACTCTTGGAACATGAGTA	0.363													64	70					0	0	0.003610	0	0
EPB42	2038	broad.mit.edu	37	15	43500525	43500525	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:43500525G>A	uc001zra.3	-	8	1278	c.978C>T	c.(976-978)TTC>TTT	p.F326F	EPB42_uc001zqz.3_5'UTR|EPB42_uc010bde.2_Silent_p.F171F|EPB42_uc001zrb.3_Silent_p.F356F|EPB42_uc010udm.1_Silent_p.F248F	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	326					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		TGGAAGTCTGGAAGATCCTGA	0.512													11	18					0	0	0.001855	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43827025	43827025	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:43827025G>A	uc001zrw.2	-	31	4332	c.4149C>T	c.(4147-4149)TAC>TAT	p.Y1383Y	PPIP5K1_uc001zrx.1_Silent_p.Y1356Y|PPIP5K1_uc001zru.2_Silent_p.Y1358Y|PPIP5K1_uc001zry.3_Silent_p.Y1358Y|PPIP5K1_uc001zrv.2_Silent_p.Y1144Y	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1383					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						AGAACTCCTGGTATGGCTGGA	0.522													36	47					0	0	0.004878	0	0
FRMD5	84978	broad.mit.edu	37	15	44166470	44166470	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:44166470C>T	uc001ztl.2	-	14	1503	c.1326G>A	c.(1324-1326)CTG>CTA	p.L442L	FRMD5_uc001ztj.1_Silent_p.L115L|FRMD5_uc001ztk.1_Silent_p.L348L|FRMD5_uc010uef.1_Silent_p.L115L|FRMD5_uc001ztm.2_Silent_p.L115L|FRMD5_uc001ztn.2_Silent_p.L208L	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	442						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		AAAGCAACATCAGCTCCAGGC	0.587													16	30					0	0	0.004007	0	0
TRIM69	140691	broad.mit.edu	37	15	45052067	45052067	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:45052067C>A	uc001zuf.2	+	7	1853	c.958C>A	c.(958-960)CCA>ACA	p.P320T	TRIM69_uc001zui.1_Missense_Mutation_p.P116T|TRIM69_uc010bdy.1_Missense_Mutation_p.P99T|TRIM69_uc001zug.1_Missense_Mutation_p.P320T|TRIM69_uc001zuh.1_Missense_Mutation_p.P161T	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	320	B30.2/SPRY.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		CACTCTCTGCCCAGGTATCAG	0.468													32	51					9.62906e-15	1.66961e-14	0.001287	1	0
DUOX2	50506	broad.mit.edu	37	15	45389917	45389917	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:45389917G>A	uc010bea.2	-	28	3791	c.3588C>T	c.(3586-3588)CTC>CTT	p.L1196L	DUOX2_uc001zun.2_Silent_p.L1196L	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1196	Interaction with TXNDC11 (By similarity).|Helical; (Potential).|Ferric oxidoreductase.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CCAGGACCAGGAGCAGAAGCA	0.582													23	42					0	0	0.005443	0	0
SLC30A4	7782	broad.mit.edu	37	15	45777479	45777479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:45777479G>A	uc001zvj.2	-	8	1484	c.1172C>T	c.(1171-1173)TCC>TTC	p.S391F		NM_013309	NP_037441	O14863	ZNT4_HUMAN	solute carrier family 30 (zinc transporter),	391	Cytoplasmic (Potential).				regulation of sequestering of zinc ion|response to toxin	endosome membrane|integral to membrane|late endosome	zinc ion transmembrane transporter activity				0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.58e-16)|GBM - Glioblastoma multiforme(94;2.15e-06)		GTTTGCTTTGGACTGTACTTC	0.363													11	13					0	0	0.001368	0	0
SEMA6D	80031	broad.mit.edu	37	15	48060830	48060830	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:48060830C>T	uc010bek.2	+	18	2178	c.1818C>T	c.(1816-1818)ATC>ATT	p.I606I	SEMA6D_uc001zvw.2_Intron|SEMA6D_uc001zvy.2_Silent_p.I606I|SEMA6D_uc001zvz.2_Intron|SEMA6D_uc001zwa.2_Intron|SEMA6D_uc001zwb.2_Intron|SEMA6D_uc001zwc.2_Intron	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	606	Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		TCCCAGAAATCACACCTAAAG	0.368													22	31					0	0	0.001523	0	0
SLC12A1	6557	broad.mit.edu	37	15	48499970	48499970	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:48499970C>T	uc001zwn.3	+	2	270	c.54C>T	c.(52-54)ACC>ACT	p.T18T	SLC12A1_uc010uew.1_Intron|SLC12A1_uc010bem.2_Silent_p.T18T|SLC12A1_uc010uex.1_Silent_p.T18T	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	18	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	CCAGTAATACCAATCGCTTTC	0.393													12	30					0	0	0.001368	0	0
C15orf33	196951	broad.mit.edu	37	15	49659779	49659779	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:49659779C>T	uc001zxl.2	-	13	1431	c.1137G>A	c.(1135-1137)GAG>GAA	p.E379E		NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	379										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		CACGATTAAACTCTGGACCAG	0.333													21	25					0	0	0.002299	0	0
FGF7	2252	broad.mit.edu	37	15	49775424	49775424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:49775424G>A	uc001zxn.2	+	3	892	c.363G>A	c.(361-363)ATG>ATA	p.M121I	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	121					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	ATCTTGCAATGAACAAGGAAG	0.353													17	30					0	0	0.001216	0	0
ATP8B4	79895	broad.mit.edu	37	15	50193414	50193414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:50193414C>T	uc001zxu.2	-	21	2306	c.2164G>A	c.(2164-2166)GGA>AGA	p.G722R	ATP8B4_uc010ber.2_Missense_Mutation_p.G595R|ATP8B4_uc010ufd.1_Missense_Mutation_p.G532R|ATP8B4_uc010ufe.1_Intron|ATP8B4_uc001zxv.1_Missense_Mutation_p.G20R	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	722	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		CTGTTTTGTCCAAACAAATTT	0.358													14	19					0	0	0.003163	0	0
ATP8B4	79895	broad.mit.edu	37	15	50212553	50212553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:50212553C>T	uc001zxu.2	-	18	1955	c.1813G>A	c.(1813-1815)GAC>AAC	p.D605N	ATP8B4_uc010ber.2_Missense_Mutation_p.D478N|ATP8B4_uc010ufd.1_Missense_Mutation_p.D415N|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	605	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		AAGTACTTGTCATCCAGGTCT	0.448													24	32					0	0	0.003330	0	0
ATP8B4	79895	broad.mit.edu	37	15	50336873	50336873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:50336873G>A	uc001zxu.2	-	5	360	c.218C>T	c.(217-219)TCC>TTC	p.S73F	ATP8B4_uc010ber.2_5'UTR|ATP8B4_uc010ufd.1_5'UTR|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	73	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		GGTCAAGGAGGAAATTTCTGG	0.353													13	14					0	0	0.002450	0	0
HDC	3067	broad.mit.edu	37	15	50534745	50534745	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:50534745G>A	uc001zxz.2	-	12	1807	c.1701C>T	c.(1699-1701)TCC>TCT	p.S567S	HDC_uc001zxy.2_Silent_p.S310S|HDC_uc010uff.1_Silent_p.S534S	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	567					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TGAACAGGAAGGAGGACAGCT	0.527													63	72					0	0	0.003610	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350237	51350237	+	Silent	SNP	G	A	A	rs138297422	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:51350237G>A	uc001zyy.2	-	3	820	c.720C>T	c.(718-720)CAC>CAT	p.H240H		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	240											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		TGGGCGTCAGGTGCCGCTGCA	0.547													15	22					0	0	0.003163	0	0
DMXL2	23312	broad.mit.edu	37	15	51795147	51795147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:51795147G>A	uc002abf.2	-	17	3073	c.2848C>T	c.(2848-2850)CCT>TCT	p.P950S	DMXL2_uc010ufy.1_Missense_Mutation_p.P950S|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	950						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CTCACACTAGGAGAGGTTTCT	0.423													29	58					0	0	0.002096	0	0
MYO5C	55930	broad.mit.edu	37	15	52497080	52497080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:52497080C>T	uc010bff.2	-	38	4939	c.4802G>A	c.(4801-4803)AGA>AAA	p.R1601K	MYO5C_uc010uga.1_RNA|uc002abv.2_Intron	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1601	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CATCCCTTTTCTGCAGGAGCA	0.602													6	19					0	0	0.001984	0	0
UNC13C	440279	broad.mit.edu	37	15	54624244	54624244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:54624244G>A	uc002ack.2	+	13	4429	c.4429G>A	c.(4429-4431)GAA>AAA	p.E1477K	UNC13C_uc002acl.2_Missense_Mutation_p.E307K	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1477					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGTACAGAGGGAAAAATTCAT	0.259													7	5					0	0	0.003080	0	0
UNC13C	440279	broad.mit.edu	37	15	54793064	54793064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:54793064C>T	uc002ack.2	+	20	5189	c.5189C>T	c.(5188-5190)TCT>TTT	p.S1730F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1730	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GCTCTCTTTTCTTGCTCCGTG	0.428													37	36					0	0	0.004878	0	0
UNC13C	440279	broad.mit.edu	37	15	54919106	54919106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:54919106G>A	uc002ack.2	+	31	6440	c.6440G>A	c.(6439-6441)CGA>CAA	p.R2147Q	UNC13C_uc002acm.2_Missense_Mutation_p.R68Q	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2147	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGAGAAGATCGAATTATCGGA	0.403													21	31					0	0	0.003330	0	0
CCPG1	9236	broad.mit.edu	37	15	55664175	55664175	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:55664175G>A	uc002acv.1	-	6	687	c.522C>T	c.(520-522)GCC>GCT	p.A174A	CCPG1_uc002acy.2_Silent_p.A174A|CCPG1_uc002acu.1_Silent_p.A30A|CCPG1_uc002acw.1_5'UTR|CCPG1_uc002acx.2_Silent_p.A174A|CCPG1_uc010bfk.1_Silent_p.A174A|CCPG1_uc002acz.1_Silent_p.A174A	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	174	Cytoplasmic (Potential).|Interaction with MCF2L and SRC (By similarity).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		GTCGTCTAAAGGCAGGACTGG	0.418													20	32					0	0	0.001216	0	0
LIPC	3990	broad.mit.edu	37	15	58855704	58855705	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:58855704_58855705GG>AA	uc010bga.1	+	10	1778_1779	c.1170_1171GG>AA	c.(1168-1173)CTGGGC>CTAAGC	p.G391S	LIPC_uc010bfz.1_Missense_Mutation_p.G391S|LIPC_uc002afa.1_Missense_Mutation_p.G391S|LIPC_uc010bgb.1_Missense_Mutation_p.G289S|LIPC_uc010ugy.1_Missense_Mutation_p.G330S	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	391	PLAT.				cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		TGTATTCAAGGGGCAAAGGAAT	0.416													11	15					0	0	0.004672	0	0
FAM63B	54629	broad.mit.edu	37	15	59063690	59063690	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:59063690G>A	uc002afj.2	+	1	298	c.96G>A	c.(94-96)GAG>GAA	p.E32E	FAM63B_uc002afi.2_Silent_p.E32E|FAM63B_uc002afk.2_RNA|FAM63B_uc002afl.2_RNA	NM_001040450	NP_001035540	Q8NBR6	FA63B_HUMAN	hypothetical protein LOC54629 isoform a	32										central_nervous_system(1)	1						GGCTACAGGAGACCAGGCTCG	0.716													11	15					0	0	0.001368	0	0
ANXA2	302	broad.mit.edu	37	15	60656652	60656652	+	Silent	SNP	G	A	A	rs140871735	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:60656652G>A	uc002agn.2	-	5	379	c.219C>T	c.(217-219)TTC>TTT	p.F73F	ANXA2_uc002agk.2_Silent_p.F73F|ANXA2_uc002agl.2_Silent_p.F73F|ANXA2_uc002agm.2_Silent_p.F91F|ANXA2_uc010uhd.1_RNA|ANXA2_uc010bgj.2_Silent_p.F73F	NM_001136015	NP_001129487	P07355	ANXA2_HUMAN	annexin A2 isoform 2	73	Annexin 1.				angiogenesis|positive regulation of vesicle fusion|skeletal system development	basement membrane|melanosome|midbody|soluble fraction	calcium ion binding|calcium-dependent phospholipid binding|cytoskeletal protein binding|phospholipase inhibitor activity			ovary(1)	1					Alteplase(DB00009)|Anistreplase(DB00029)|Tenecteplase(DB00031)	TCTGGTAGGCGAAGGCAATAT	0.423													18	32					0	0	0.000958	0	0
RORA	6095	broad.mit.edu	37	15	60919495	60919495	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:60919495G>A	uc002agv.2	-	1	235	c.79C>T	c.(79-81)CGA>TGA	p.R27*	RORA_uc002agw.2_Nonsense_Mutation_p.R27*|RORA_uc002agx.2_Intron	NM_134260	NP_599022	P35398	RORA_HUMAN	RAR-related orphan receptor A isoform b	27	Modulating.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						TGTCCAGTTCGAAGACAATGA	0.413													29	48					0	0	0.001512	0	0
TLN2	83660	broad.mit.edu	37	15	63054609	63054609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:63054609C>T	uc002alb.3	+	36	4918	c.4918C>T	c.(4918-4920)CAT>TAT	p.H1640Y	TLN2_uc002alc.3_Missense_Mutation_p.H33Y|TLN2_uc002ald.2_Missense_Mutation_p.H33Y	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1640					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TGGACATTCCCATACAGTGTC	0.562													31	51					0	0	0.003271	0	0
TLN2	83660	broad.mit.edu	37	15	63128178	63128178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:63128178C>T	uc002alb.3	+	54	7280	c.7280C>T	c.(7279-7281)TCA>TTA	p.S2427L	TLN2_uc002alc.3_Missense_Mutation_p.S820L|TLN2_uc010uic.1_Missense_Mutation_p.S28L|uc002ale.1_5'Flank	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2427	I/LWEQ.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						AAGCTCATCTCATCTGCCAAG	0.642													11	14					0	0	0.000673	0	0
IGDCC4	57722	broad.mit.edu	37	15	65676627	65676627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:65676627G>A	uc002aou.1	-	20	3683	c.3473C>T	c.(3472-3474)CCC>CTC	p.P1158L	IGDCC4_uc002aot.1_Missense_Mutation_p.P746L	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1158	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						TGGAGGCAGGGGGTCCTCAGG	0.612													12	22					0	0	0.003163	0	0
C15orf44	81556	broad.mit.edu	37	15	65899684	65899684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:65899684G>A	uc002apd.2	-	2	371	c.35C>T	c.(34-36)TCC>TTC	p.S12F	C15orf44_uc010uix.1_Missense_Mutation_p.S48F|C15orf44_uc010uiz.1_Missense_Mutation_p.S12F|C15orf44_uc010uja.1_Missense_Mutation_p.S12F|C15orf44_uc010ujb.1_Intron|C15orf44_uc002ape.3_Missense_Mutation_p.S12F|C15orf44_uc010uiy.1_5'UTR|C15orf44_uc010ujc.1_Missense_Mutation_p.S12F	NM_030800	NP_110427	Q96SY0	CO044_HUMAN	hypothetical protein LOC81556 isoform 2	12	VWFA.									ovary(1)	1						TCGGGTCATGGAAAGGGATAC	0.478													9	19					0	0	0.000673	0	0
ANP32A	8125	broad.mit.edu	37	15	69076829	69076829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:69076829G>A	uc002arl.2	-	4	604	c.433C>T	c.(433-435)CTC>TTC	p.L145F		NM_006305	NP_006296	P39687	AN32A_HUMAN	acidic (leucine-rich) nuclear phosphoprotein 32	145	LRRCT.				intracellular signal transduction|mRNA metabolic process|nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum|nucleoplasm|perinuclear region of cytoplasm	protein binding				0						TAGCCGTCGAGATATGTGAGT	0.537													17	29					0	0	0.004990	0	0
SPESP1	246777	broad.mit.edu	37	15	69238249	69238249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:69238249C>T	uc002arn.1	+	2	504	c.376C>T	c.(376-378)CCA>TCA	p.P126S	NOX5_uc002arp.1_Intron|NOX5_uc002arq.1_Intron|NOX5_uc010bid.1_Intron|NOX5_uc002aro.2_Intron	NM_145658	NP_663633	Q6UW49	SPESP_HUMAN	sperm equatorial segment protein 1 precursor	126					multicellular organismal development	acrosomal vesicle					0						GTCGATCAAACCAAACAATGT	0.448													17	13					0	0	0.004990	0	0
LARP6	55323	broad.mit.edu	37	15	71124473	71124473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:71124473G>A	uc002ass.2	-	3	1465	c.1394C>T	c.(1393-1395)CCC>CTC	p.P465L		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	465					RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						CACCCCTACGGGTAGCCCATC	0.577													31	38					0	0	0.002836	0	0
THSD4	79875	broad.mit.edu	37	15	72037445	72037445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:72037445G>A	uc002atb.1	+	11	1986	c.1907G>A	c.(1906-1908)GGA>GAA	p.G636E	THSD4_uc002ate.2_Missense_Mutation_p.G276E	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	636						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						GTTGTTGCAGGATCGCAGTAC	0.547													116	152					0	0	0.003610	0	0
MYO9A	4649	broad.mit.edu	37	15	72190967	72190967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:72190967G>A	uc002atl.3	-	25	4350	c.3877C>T	c.(3877-3879)CGT>TGT	p.R1293C	MYO9A_uc010biq.2_Missense_Mutation_p.R913C|MYO9A_uc002atn.1_Missense_Mutation_p.R1274C|MYO9A_uc002atk.2_Missense_Mutation_p.R17C|MYO9A_uc002atm.1_Missense_Mutation_p.R17C	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1293	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CCAAGAGAACGAACTTTCAGC	0.463													36	39					0	0	0.002836	0	0
CD276	80381	broad.mit.edu	37	15	73994885	73994885	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:73994885C>T	uc002avv.1	+	3	603	c.369C>T	c.(367-369)TTC>TTT	p.F123F	CD276_uc010bjd.1_5'UTR|CD276_uc002avu.1_Silent_p.F123F|CD276_uc002avw.1_Silent_p.F123F|CD276_uc010ulb.1_Silent_p.F69F|CD276_uc002avx.2_5'Flank	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	123	Ig-like V-type 1.|Extracellular (Potential).				cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						TCACCTGCTTCGTGAGCATCC	0.682													9	19					0	0	0.004482	0	0
ISLR2	57611	broad.mit.edu	37	15	74427116	74427116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:74427116G>A	uc002axd.2	+	4	2790	c.2021G>A	c.(2020-2022)GGG>GAG	p.G674E	ISLR2_uc002axe.2_Missense_Mutation_p.G674E|ISLR2_uc010bjg.2_Missense_Mutation_p.G674E|ISLR2_uc010bjf.2_Missense_Mutation_p.G674E	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	674	Cytoplasmic (Potential).				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						GACGTGCAGGGGGAGGGCCTT	0.672											OREG0023277	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	26					0	0	0.001216	0	0
STRA6	64220	broad.mit.edu	37	15	74472508	74472508	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:74472508C>T	uc002axk.2	-	19	2099	c.1917G>A	c.(1915-1917)TGG>TGA	p.W639*	STRA6_uc002axi.2_Nonsense_Mutation_p.W448*|STRA6_uc010ulh.1_Nonsense_Mutation_p.W677*|STRA6_uc002axj.2_Nonsense_Mutation_p.W678*|STRA6_uc010bji.2_Nonsense_Mutation_p.W639*|STRA6_uc002axl.2_Nonsense_Mutation_p.W571*|STRA6_uc002axm.2_Nonsense_Mutation_p.W639*|STRA6_uc002axn.2_Nonsense_Mutation_p.W630*|STRA6_uc010uli.1_Nonsense_Mutation_p.W676*	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	639	Cytoplasmic (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						AGGCCAGACCCCAGCGAGCCC	0.647													35	73					0	0	0.004289	0	0
CYP11A1	1583	broad.mit.edu	37	15	74659852	74659852	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:74659852C>T	uc002axt.2	-	1	230	c.75G>A	c.(73-75)GAG>GAA	p.E25E	CYP11A1_uc002axs.2_5'Flank|CYP11A1_uc010bjm.1_5'Flank|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Silent_p.E25E|CYP11A1_uc010ulj.1_5'UTR|CYP11A1_uc010bjq.2_Silent_p.E25E	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	25					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	GCCCCAGCCCCTCCCTGGGGG	0.642													13	21					0	0	0.002450	0	0
CYP1A2	1544	broad.mit.edu	37	15	75042543	75042543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:75042543C>T	uc002ayr.1	+	2	528	c.464C>T	c.(463-465)TCC>TTC	p.S155F		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	155					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	GACCCAGCTTCCTCATCCTCC	0.627													36	62					0	0	0.005524	0	0
CYP1A2	1544	broad.mit.edu	37	15	75044163	75044163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:75044163C>T	uc002ayr.1	+	4	1074	c.1010C>T	c.(1009-1011)CCT>CTT	p.P337L		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	337					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	GTGACCAAGCCTGAGATACAG	0.488													24	37					0	0	0.004656	0	0
CYP1A2	1544	broad.mit.edu	37	15	75044176	75044176	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:75044176G>A	uc002ayr.1	+	4	1087	c.1023G>A	c.(1021-1023)AGG>AGA	p.R341R		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	341					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	AGATACAGAGGAAGATCCAGA	0.463													20	32					0	0	0.001216	0	0
SCAMP2	10066	broad.mit.edu	37	15	75143738	75143738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:75143738G>A	uc002azb.1	-	5	502	c.428C>T	c.(427-429)GCC>GTC	p.A143V	SCAMP2_uc002aza.1_5'UTR|SCAMP2_uc010bkg.1_Intron	NM_005697	NP_005688	O15127	SCAM2_HUMAN	secretory carrier membrane protein 2	143	Cytoplasmic (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|nucleus|recycling endosome membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						CTGGTAGTCGGCAGGGATCTC	0.552													24	48					0	0	0.004656	0	0
SCAMP5	192683	broad.mit.edu	37	15	75310764	75310764	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:75310764G>A	uc002azk.1	+	6	563	c.401G>A	c.(400-402)TGG>TAG	p.W134*	SCAMP5_uc002azl.1_Nonsense_Mutation_p.W134*|SCAMP5_uc002azm.1_Nonsense_Mutation_p.W134*|SCAMP5_uc002azn.1_Nonsense_Mutation_p.W142*|SCAMP5_uc010uly.1_Nonsense_Mutation_p.W63*	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	134	Extracellular (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						TGCAGCGGCTGGATTGCTACC	0.587													41	56					0	0	0.002522	0	0
SCAMP5	192683	broad.mit.edu	37	15	75311250	75311250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:75311250G>A	uc002azk.1	+	7	796	c.634G>A	c.(634-636)GCC>ACC	p.A212T	SCAMP5_uc002azl.1_Missense_Mutation_p.A212T|SCAMP5_uc002azm.1_Missense_Mutation_p.A212T|SCAMP5_uc002azn.1_Missense_Mutation_p.A220T|SCAMP5_uc010uly.1_Missense_Mutation_p.A141T	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	212	Cytoplasmic (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						CATGGGGGCAGCCCAGGGTGC	0.587													23	17					0	0	0.002780	0	0
PTPN9	5780	broad.mit.edu	37	15	75816585	75816585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:75816585G>A	uc002bal.2	-	3	770	c.262C>T	c.(262-264)CGT>TGT	p.R88C		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	88	CRAL-TRIO.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						ATCTCAGAACGAAGAGGTTCC	0.388													34	49					0	0	0.002522	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78316844	78316844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:78316844G>A	uc002bcy.3	-	6	1124	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F	TBC1D2B_uc010bla.2_Missense_Mutation_p.S375F	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	375	Potential.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						GTCATACTGGGATGACCGGAC	0.527													11	27					0	0	0.000978	0	0
CIB2	10518	broad.mit.edu	37	15	78416051	78416051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:78416051G>A	uc002bdb.1	-	2	403	c.82C>T	c.(82-84)CTC>TTC	p.L28F	CIB2_uc002bdc.1_Intron|CIB2_uc010ums.1_Missense_Mutation_p.L28F	NM_006383	NP_006374	O75838	CIB2_HUMAN	DNA-dependent protein kinase catalytic	28							calcium ion binding				0						ACTTACTTGAGGATGTCCTTC	0.443													17	27					0	0	0.000958	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058381	79058381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:79058381G>A	uc002bej.3	-	19	4083	c.3872C>T	c.(3871-3873)TCT>TTT	p.S1291F	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1291					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						AGGAAGGAGAGAAGCCACCCC	0.652													7	13					0	0	0.001855	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058733	79058733	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:79058733G>A	uc002bej.3	-	19	3731	c.3520C>T	c.(3520-3522)CTG>TTG	p.L1174L	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1174					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GGCCAGGACAGGCTGGGGAGC	0.617													9	6					0	0	0.000673	0	0
RASGRF1	5923	broad.mit.edu	37	15	79265704	79265704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:79265704C>T	uc002beq.2	-	26	3976	c.3601G>A	c.(3601-3603)GAG>AAG	p.E1201K	RASGRF1_uc002bep.2_Missense_Mutation_p.E1185K|RASGRF1_uc002beo.2_Missense_Mutation_p.E417K	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	1203	Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GTCCCCTCCTCGATGAAGGCC	0.547													18	38					0	0	0.004990	0	0
KIAA1199	57214	broad.mit.edu	37	15	81235313	81235313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:81235313G>A	uc002bfw.1	+	27	3987	c.3727G>A	c.(3727-3729)GAG>AAG	p.E1243K	KIAA1199_uc010unn.1_Missense_Mutation_p.E1243K	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	1243										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCCCAGTTCGGAGGATGGCAT	0.597													65	94					0	0	0.003610	0	0
FAM154B	283726	broad.mit.edu	37	15	82564131	82564131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:82564131C>T	uc002bgv.2	+	2	310	c.241C>T	c.(241-243)CCA>TCA	p.P81S	FAM154B_uc010unr.1_Missense_Mutation_p.P66S|FAM154B_uc010uns.1_RNA	NM_001008226	NP_001008227	Q658L1	F154B_HUMAN	hypothetical protein LOC283726	81										skin(2)	2						GGACACTGTCCCAACCTATAA	0.373													15	19					0	0	0.004990	0	0
AP3B2	8120	broad.mit.edu	37	15	83349688	83349688	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:83349688G>A	uc010uoh.1	-	7	849	c.672C>T	c.(670-672)CTC>CTT	p.L224L	AP3B2_uc010uoi.1_Silent_p.L224L|AP3B2_uc010uoj.1_Silent_p.L192L|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	224					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			GCAGGTTACAGAGTTTCCGGT	0.597													13	17					0	0	0.001368	0	0
BNC1	646	broad.mit.edu	37	15	83933105	83933105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:83933105C>T	uc002bjt.1	-	4	986	c.898G>A	c.(898-900)GAA>AAA	p.E300K	BNC1_uc010uos.1_Missense_Mutation_p.E288K	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	300					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TGATCTTTTTCAACCTGAAAT	0.448													33	47					0	0	0.002445	0	0
SH3GL3	6457	broad.mit.edu	37	15	84237407	84237407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:84237407G>A	uc002bjw.2	+	4	509	c.314G>A	c.(313-315)GGG>GAG	p.G105E	SH3GL3_uc010uot.1_Missense_Mutation_p.G105E|SH3GL3_uc002bjx.2_Missense_Mutation_p.G36E|SH3GL3_uc002bju.2_Missense_Mutation_p.G113E|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	105	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						AAGGAGCTCGGGGAAGACTCC	0.517													14	21					0	0	0.003163	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84373178	84373178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:84373178C>T	uc002bjz.3	+	3	331	c.107C>T	c.(106-108)CCC>CTC	p.P36L	ADAMTSL3_uc002bjy.1_Missense_Mutation_p.P36L|ADAMTSL3_uc010bmt.1_Missense_Mutation_p.P36L|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.P36L	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	36						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TATTTCCTTCCCGAGTTTGCA	0.463													96	110					0	0	0.003610	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84690332	84690332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:84690332G>A	uc002bjz.3	+	26	4668	c.4444G>A	c.(4444-4446)GAC>AAC	p.D1482N	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.D1482N|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.D1482N	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1482	TSP type-1 8.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding	p.D1482N(1)		ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TAACATCCGGGACTGCCCAGC	0.483													15	16					0	0	0.003163	0	0
SLC28A1	9154	broad.mit.edu	37	15	85448872	85448872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:85448872G>A	uc002blg.2	+	8	908	c.706G>A	c.(706-708)GAG>AAG	p.E236K	SLC28A1_uc010upd.1_Missense_Mutation_p.E158K|SLC28A1_uc010bnb.2_Missense_Mutation_p.E236K|SLC28A1_uc010upe.1_Missense_Mutation_p.E236K|SLC28A1_uc010upf.1_Missense_Mutation_p.E236K|SLC28A1_uc010upg.1_Missense_Mutation_p.E236K	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	236					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GTGGCTGGGCGAGCAGATCCG	0.567													9	28					0	0	0.000443	0	0
AGBL1	123624	broad.mit.edu	37	15	86940627	86940627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:86940627G>A	uc002blz.1	+	17	2347	c.2267G>A	c.(2266-2268)CGA>CAA	p.R756Q		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	756					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						ATCACTGCTCGAGTTCATCCA	0.433													13	29					0	0	0.002450	0	0
NTRK3	4916	broad.mit.edu	37	15	88678470	88678470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:88678470C>T	uc002bme.1	-	9	1228	c.1066G>A	c.(1066-1068)GGA>AGA	p.G356R	NTRK3_uc002bmh.2_Missense_Mutation_p.G356R|NTRK3_uc002bmf.1_Missense_Mutation_p.G356R|NTRK3_uc010upl.1_Missense_Mutation_p.G258R|NTRK3_uc010bnh.1_Missense_Mutation_p.G356R|NTRK3_uc002bmg.2_Missense_Mutation_p.G356R	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	356	Ig-like C2-type 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GAAATCTCTCCCTCTTGGTAG	0.557			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			22	56					0	0	0.002299	0	0
ACAN	176	broad.mit.edu	37	15	89381998	89381998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:89381998C>T	uc010upo.1	+	3	549	c.175C>T	c.(175-177)CCT>TCT	p.P59S	ACAN_uc002bmx.2_Missense_Mutation_p.P59S|ACAN_uc010upp.1_Missense_Mutation_p.P59S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	59					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CCCCATGCACCCTGTGACCAC	0.622													13	19					0	0	0.001368	0	0
RLBP1	6017	broad.mit.edu	37	15	89755083	89755083	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:89755083T>A	uc002bnl.2	-	7	955	c.575A>T	c.(574-576)GAA>GTA	p.E192V		NM_000326	NP_000317	P12271	RLBP1_HUMAN	retinaldehyde binding protein 1	192	CRAL-TRIO.				response to stimulus|visual perception|vitamin A metabolic process	cytoplasm|soluble fraction	retinol binding|transporter activity			central_nervous_system(1)	1	Lung NSC(78;0.0472)|all_lung(78;0.089)				Vitamin A(DB00162)	GATTTGAGTTTCCTCATTCTC	0.468													19	29					0	0	0.000743	0	0
POLG	5428	broad.mit.edu	37	15	89870573	89870573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:89870573G>A	uc002bns.3	-	7	1540	c.1258C>T	c.(1258-1260)CAC>TAC	p.H420Y	POLG_uc002bnr.3_Missense_Mutation_p.H420Y	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	420					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			GTCACTGGGTGGGGACACCTT	0.582								DNA_polymerases_(catalytic_subunits)					12	17					0	0	0.002450	0	0
ANPEP	290	broad.mit.edu	37	15	90349337	90349337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:90349337C>T	uc002bop.3	-	2	770	c.478G>A	c.(478-480)GAG>AAG	p.E160K		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	160	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	ACCAGGTACTCGGTGGGCTCC	0.632													21	29					0	0	0.004656	0	0
SV2B	9899	broad.mit.edu	37	15	91810784	91810784	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:91810784G>A	uc002bqv.2	+	7	1511	c.1120_splice	c.e7-1	p.V374_splice	SV2B_uc002bqt.2_Splice_Site_p.V374_splice|SV2B_uc010uqv.1_Splice_Site_p.V223_splice|SV2B_uc002bqu.3_Splice_Site	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog						neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			ATGGGTTGTAGGTCTGGGATA	0.443													142	203					0	0	0.003610	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92647532	92647532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:92647532G>A	uc002bqx.2	+	4	970	c.769G>A	c.(769-771)GAC>AAC	p.D257N	SLCO3A1_uc002bqy.2_Missense_Mutation_p.D257N|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.D199N	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	257	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			CACTCCGGACGACCCCCGCTG	0.542													49	88					0	0	0.003610	0	0
CHD2	1106	broad.mit.edu	37	15	93557966	93557966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:93557966C>T	uc002bsp.2	+	37	5308	c.4733C>T	c.(4732-4734)CCA>CTA	p.P1578L	CHD2_uc002bso.1_Missense_Mutation_p.P1578L	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1578					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GGTAAGAAACCATTTCGTCCA	0.502													32	40					0	0	0.002836	0	0
CHD2	1106	broad.mit.edu	37	15	93567810	93567810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:93567810C>T	uc002bsp.2	+	39	5937	c.5362C>T	c.(5362-5364)CGC>TGC	p.R1788C		NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1788					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			CTCAGATCCTCGCTCACCCCC	0.502													17	23					0	0	0.000958	0	0
C15orf51	196968	broad.mit.edu	37	15	100331066	100331066	+	RNA	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:100331066G>T	uc010urx.1	-	5		c.3126C>A			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TCCCAGAGGGGGCGGCCCCTC	0.453													10	27					0.000673444	0.00115805	0.000673	1	0
C15orf51	196968	broad.mit.edu	37	15	100332311	100332311	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:100332311G>A	uc010urx.1	-	5		c.1881C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						AGGTCATGGAGAAGCTGGAGG	0.627													26	53					0	0	0.004656	0	0
LINS1	55180	broad.mit.edu	37	15	101114334	101114334	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:101114334G>A	uc002bwe.2	-	6	1035	c.744C>T	c.(742-744)ATC>ATT	p.I248I	LINS1_uc002bwd.2_5'Flank|LINS1_uc002bwf.2_Silent_p.I248I|LINS1_uc002bwg.2_Silent_p.I248I|LINS1_uc002bwh.2_Silent_p.I248I|LINS1_uc010usa.1_Silent_p.I129I|LINS1_uc002bwi.2_Silent_p.I248I	NM_001040614	NP_001035704	Q8NG48	LINES_HUMAN	lines homolog 1	248											0	Lung NSC(78;0.0018)|all_lung(78;0.00223)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00095)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			AACACATCAGGATGTTTACTA	0.378													21	26					0	0	0.001882	0	0
LRRK1	79705	broad.mit.edu	37	15	101549171	101549171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr15:101549171C>T	uc002bwr.2	+	7	1211	c.892C>T	c.(892-894)CCC>TCC	p.P298S	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	298	LRR 1.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTCGGTTATCCCCTGGGGCCT	0.597											OREG0023521	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	12					0	0	0.001368	0	0
TMEM8A	58986	broad.mit.edu	37	16	426150	426150	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:426150G>A	uc002cgu.3	-	6	1339	c.1210C>T	c.(1210-1212)CTG>TTG	p.L404L	TMEM8A_uc002cgv.3_Silent_p.L211L	NM_021259	NP_067082	Q9HCN3	TMM8A_HUMAN	transmembrane protein 8 (five membrane-spanning	404	Extracellular (Potential).				cell adhesion	integral to plasma membrane				central_nervous_system(2)|pancreas(1)	3						TTGGCCCGCAGGGAGATGGTG	0.677													5	9					0	0	0.001168	0	0
TMEM8A	58986	broad.mit.edu	37	16	426584	426584	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:426584G>A	uc002cgu.3	-	5	993	c.864C>T	c.(862-864)CCC>CCT	p.P288P	TMEM8A_uc002cgv.3_Silent_p.P95P	NM_021259	NP_067082	Q9HCN3	TMM8A_HUMAN	transmembrane protein 8 (five membrane-spanning	288	Extracellular (Potential).				cell adhesion	integral to plasma membrane				central_nervous_system(2)|pancreas(1)	3						CTGTCCCGAGGGGCCCCACCA	0.692													8	14					0	0	0.000443	0	0
PIGQ	9091	broad.mit.edu	37	16	632972	632972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:632972C>T	uc002cho.2	+	10	1723	c.1621C>T	c.(1621-1623)CCG>TCG	p.P541S	PIGQ_uc010bqw.2_Silent_p.C561C|PIGQ_uc002chn.2_Silent_p.C561C|PIGQ_uc010uui.1_3'UTR|PIGQ_uc002chp.2_Missense_Mutation_p.P111S|uc010uuj.1_3'UTR	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	541					C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				GCGCCCTGTGCCGCAAGCTGT	0.652													24	28					0	0	0.002780	0	0
WDR90	197335	broad.mit.edu	37	16	711461	711461	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:711461C>T	uc002cii.1	+	30	3687	c.3633C>T	c.(3631-3633)GCC>GCT	p.A1211A	WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Silent_p.A738A|WDR90_uc002cil.1_RNA|WDR90_uc002cim.1_Silent_p.A385A|WDR90_uc002cin.1_5'UTR	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	1211	WD 13.									ovary(1)	1		Hepatocellular(780;0.0218)				CCGTGCTGGCCCTGGCCTTCT	0.647													18	31					0	0	0.001882	0	0
MSLN	10232	broad.mit.edu	37	16	818649	818649	+	Silent	SNP	G	A	A	rs149124925		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:818649G>A	uc002cjw.1	+	17	1860	c.1809G>A	c.(1807-1809)GAG>GAA	p.E603E	MSLN_uc002cjt.1_Silent_p.E595E|MSLN_uc002cju.1_Silent_p.E595E|MSLN_uc010brd.1_Silent_p.E594E|MSLN_uc002cjv.1_Intron|MSLN_uc002cjx.1_Silent_p.E595E|MSLN_uc002cjy.1_Missense_Mutation_p.G288S|MIR662_hsa-mir-662|MI0003670_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	603					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				TCTCTGTAGAGGCCCTCTCGG	0.697													14	18					0	0	0.003163	0	0
MSLNL	401827	broad.mit.edu	37	16	820106	820106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:820106G>A	uc002cjz.1	-	15	2879	c.2879C>T	c.(2878-2880)CCC>CTC	p.P960L	MIR662_hsa-mir-662|MI0003670_5'Flank	NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	609	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						GGTGGTGCTGGGGGGCCCCCT	0.731													4	6					0	0	0.000248	0	0
LMF1	64788	broad.mit.edu	37	16	960943	960943	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:960943G>A	uc002ckj.2	-	4	655	c.651C>T	c.(649-651)ATC>ATT	p.I217I	LMF1_uc010brh.2_5'UTR|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_5'UTR|LMF1_uc010uuu.1_RNA|LMF1_uc010uuv.1_RNA	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	217	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				CTCCAAGCATGATCCTGAAGA	0.567													11	12					0	0	0.001368	0	0
C1QTNF8	390664	broad.mit.edu	37	16	1143829	1143829	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:1143829T>C	uc010uuw.1	-	4	705	c.431A>G	c.(430-432)AAC>AGC	p.N144S		NM_207419	NP_997302	P60827	C1QT8_HUMAN	C1q and tumor necrosis factor related protein 8	144	C1q.					collagen				skin(1)	1		Hepatocellular(780;0.00369)				GCCGTCCAGGTTCACCAGCTC	0.692													6	18					0	0	0.001168	0	0
CACNA1H	8912	broad.mit.edu	37	16	1262102	1262102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:1262102G>A	uc002cks.2	+	25	4971	c.4723G>A	c.(4723-4725)GAG>AAG	p.E1575K	CACNA1H_uc002ckt.2_Missense_Mutation_p.E1575K|CACNA1H_uc002cku.2_Missense_Mutation_p.E281K|CACNA1H_uc010brj.2_Missense_Mutation_p.E281K|CACNA1H_uc002ckv.2_Missense_Mutation_p.E281K	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1575	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GCGGCGAGAGGAGAAGCGGCT	0.692													14	22					0	0	0.001855	0	0
BAIAP3	8938	broad.mit.edu	37	16	1391307	1391307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:1391307C>T	uc002clk.1	+	8	653	c.653C>T	c.(652-654)CCA>CTA	p.P218L	BAIAP3_uc002clj.2_Missense_Mutation_p.P200L|BAIAP3_uc010uuz.1_Missense_Mutation_p.P183L|BAIAP3_uc010uva.1_Missense_Mutation_p.P155L|BAIAP3_uc010uvb.1_Missense_Mutation_p.P235L|BAIAP3_uc010uvc.1_Missense_Mutation_p.P183L	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	218	C2 1.				G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				TTCAGCGACCCATACTGCATG	0.716													12	26					0	0	0.000978	0	0
BAIAP3	8938	broad.mit.edu	37	16	1398005	1398005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:1398005G>A	uc002clk.1	+	32	3241	c.3241G>A	c.(3241-3243)GAA>AAA	p.E1081K	BAIAP3_uc002clj.2_Missense_Mutation_p.E1063K|BAIAP3_uc010uuz.1_Missense_Mutation_p.E1046K|BAIAP3_uc010uva.1_Missense_Mutation_p.E1018K|BAIAP3_uc010uvc.1_Missense_Mutation_p.E1010K	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	1081	C2 2.				G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				TGTATACGACGAACTCTTCTA	0.562													21	64					0	0	0.002780	0	0
C16orf91	283951	broad.mit.edu	37	16	1476274	1476275	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:1476274_1476275CC>TT	uc010uvd.1	-	3	348_349	c.348_349GG>AA	c.(346-351)AGGGCC>AGAACC	p.A117T		NM_001010878	NP_001010878	Q4G0I0	CSMT1_HUMAN	hypothetical protein LOC283951	Error:Variant_position_missing_in_Q4G0I0_after_alignment						integral to membrane					0						AATCGAAGGGCCCTCTGGTTAG	0.609													12	28					0	0	0.004672	0	0
TELO2	9894	broad.mit.edu	37	16	1551718	1551718	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:1551718C>T	uc002cly.2	+	11	1707	c.1416C>T	c.(1414-1416)ATC>ATT	p.I472I		NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	472						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				CCGCAGAGATCGTGGATGGCG	0.657													12	27					0	0	0.001368	0	0
HS3ST6	64711	broad.mit.edu	37	16	1961651	1961651	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:1961651G>A	uc002cnf.2	-	2	876	c.876C>T	c.(874-876)TTC>TTT	p.F292F		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	292											0						AGGGCCGGTAGAACTCCTGCA	0.697													3	2					0	0	0.000248	0	0
RPL3L	6123	broad.mit.edu	37	16	2000917	2000917	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2000917T>A	uc002cnh.2	-	4	476	c.429A>T	c.(427-429)AAA>AAT	p.K143N		NM_005061	NP_005052	Q92901	RL3L_HUMAN	ribosomal protein L3-like	143					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome				0						GTAGCTGCTTTTTCCCGTCTG	0.587													31	32					0	0	0.004878	0	0
SYNGR3	9143	broad.mit.edu	37	16	2042954	2042954	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2042954C>T	uc002cod.2	+	4	707	c.571C>T	c.(571-573)CAG>TAG	p.Q191*		NM_004209	NP_004200	O43761	SNG3_HUMAN	synaptogyrin 3	191					positive regulation of transporter activity	cell junction|integral to plasma membrane|synaptic vesicle					0						CGGGGCGAGCCAGGCCTACCC	0.701													4	8					0	0	0.000248	0	0
ZNF598	90850	broad.mit.edu	37	16	2050212	2050212	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2050212G>A	uc002cof.1	-	11	1353	c.1338C>T	c.(1336-1338)CCC>CCT	p.P446P	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	446						intracellular	zinc ion binding			lung(1)|breast(1)	2						CAGAGAGGCTGGGGAAGTCTT	0.662													30	40					0	0	0.004289	0	0
NTHL1	4913	broad.mit.edu	37	16	2096242	2096242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2096242G>A	uc002col.1	-	2	284	c.265C>T	c.(265-267)CCC>TCC	p.P89S	NTHL1_uc002com.1_Missense_Mutation_p.P89S	NM_002528	NP_002519	P78549	NTHL1_HUMAN	nth endonuclease III-like 1	89					depyrimidination|nucleotide-excision repair, DNA incision, 5'-to lesion	nucleoplasm	4 iron, 4 sulfur cluster binding|double-stranded DNA binding|endonuclease activity|metal ion binding|oxidized pyrimidine base lesion DNA N-glycosylase activity|protein binding			lung(1)	1						CAGTCCTGGGGCTCCCAGACT	0.597								BER_DNA_glycosylases					23	50					0	0	0.004656	0	0
TSC2	7249	broad.mit.edu	37	16	2100463	2100463	+	Silent	SNP	C	T	T	rs45460096		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2100463C>T	uc002con.2	+	3	307	c.201C>T	c.(199-201)GTC>GTT	p.V67V	NTHL1_uc002col.1_5'Flank|NTHL1_uc002com.1_5'Flank|TSC2_uc010uvu.1_Silent_p.V67V|TSC2_uc010bsd.2_Silent_p.V67V|TSC2_uc002coo.2_Silent_p.V67V|TSC2_uc010uvv.1_Silent_p.V67V|TSC2_uc010uvw.1_Silent_p.V18V|TSC2_uc002cop.2_5'UTR	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	67	Required for interaction with TSC1.				cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				TTTGTGAAGTCGCAAAAACCA	0.448			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				21	34					0	0	0.002299	0	0
PKD1	5310	broad.mit.edu	37	16	2159291	2159291	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2159291G>A	uc002cos.1	-	15	6086	c.5877C>T	c.(5875-5877)GCC>GCT	p.A1959A	PKD1_uc002cot.1_Silent_p.A1959A	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1959	Extracellular (Potential).|PKD 15.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CCTGCGCCTGGGCCCAGCTCA	0.687													8	6					0	0	0.003080	0	0
PKD1	5310	broad.mit.edu	37	16	2159811	2159811	+	Missense_Mutation	SNP	G	A	A	rs151176070		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2159811G>A	uc002cos.1	-	15	5566	c.5357C>T	c.(5356-5358)CCG>CTG	p.P1786L	PKD1_uc002cot.1_Missense_Mutation_p.P1786L	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1786	PKD 13.|Extracellular (Potential).		P -> L (rare polymorphism).		calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						TGAGCCCAGCGGGTTCCCTGC	0.662													11	17					0	0	0.001368	0	0
CASKIN1	57524	broad.mit.edu	37	16	2239522	2239522	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2239522C>T	uc010bsg.1	-	4	320	c.288G>A	c.(286-288)GAG>GAA	p.E96E		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	96	ANK 2.				signal transduction	cytoplasm				skin(2)	2						GCTTCATGGGCTCCTTCCGGC	0.672													8	6					0	0	0.000673	0	0
C16orf59	80178	broad.mit.edu	37	16	2514539	2514539	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2514539T>G	uc002cqh.2	+	10	1203	c.1172T>G	c.(1171-1173)CTC>CGC	p.L391R	C16orf59_uc002cqf.1_3'UTR|C16orf59_uc002cqg.1_3'UTR|C16orf59_uc002cqi.2_Missense_Mutation_p.L224R|C16orf59_uc010uwb.1_3'UTR	NM_025108	NP_079384	Q7L2K0	CP059_HUMAN	hypothetical protein LOC80178	391											0		Ovarian(90;0.17)				ATGGCTGAACTCCTCCCCCTG	0.706													12	11					0	0	0.001855	0	0
TBC1D24	57465	broad.mit.edu	37	16	2548287	2548287	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2548287C>T	uc002cql.2	+	4	1172	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I	TBC1D24_uc002cqk.2_Silent_p.I338I|TBC1D24_uc002cqm.2_Intron|TBC1D24_uc010bsm.2_RNA	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	344					neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						GCTCGGAGATCGTCAGCGTGA	0.637													4	5					0	0	0.000602	0	0
ZG16B	124220	broad.mit.edu	37	16	2882090	2882090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:2882090C>T	uc002cru.2	+	4	633	c.557C>T	c.(556-558)CCA>CTA	p.P186L		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	186						extracellular region	sugar binding			ovary(1)	1						TGGAATTATCCACTAGAGGAG	0.562													22	39					0	0	0.002299	0	0
CLDN9	9080	broad.mit.edu	37	16	3063838	3063838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3063838G>A	uc010uwo.1	+	1	1382	c.475G>A	c.(475-477)GAG>AAG	p.E159K		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	159	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CCTCAAGCGGGAGCTGGGGGC	0.706													7	13					0	0	0.001984	0	0
IL32	9235	broad.mit.edu	37	16	3119311	3119311	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3119311G>A	uc002cto.2	+	6	871	c.660G>A	c.(658-660)GAG>GAA	p.E220E	IL32_uc002ctk.2_Silent_p.E117E|IL32_uc010uwp.1_Silent_p.E154E|IL32_uc010btb.2_Silent_p.E164E|IL32_uc002ctl.2_Silent_p.E174E|IL32_uc002ctm.2_Silent_p.E174E|IL32_uc002ctn.2_Silent_p.E174E|IL32_uc002cts.3_Silent_p.E174E|IL32_uc002ctp.2_Silent_p.E154E|IL32_uc002ctq.2_Silent_p.E220E|IL32_uc002ctr.2_Silent_p.E154E|IL32_uc002ctt.2_Silent_p.E174E|IL32_uc010uwr.1_Silent_p.E134E|IL32_uc002ctu.2_Silent_p.E165E	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	220					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						GGGACAAGGAGGAGCTGACAC	0.582													29	88					0	0	0.001786	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3140504	3140504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3140504C>T	uc002ctv.1	-	5	854	c.766G>A	c.(766-768)GGC>AGC	p.G256S	ZSCAN10_uc002cty.1_5'UTR|ZSCAN10_uc002ctw.1_Missense_Mutation_p.G174S|ZSCAN10_uc002ctx.1_Missense_Mutation_p.G184S	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	256					negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GCCGCAGCGCCCCGTCCGAGC	0.647													26	32					0	0	0.005443	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3142078	3142078	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3142078C>T	uc002ctv.1	-	2	559	c.471G>A	c.(469-471)CAG>CAA	p.Q157Q	ZSCAN10_uc002cty.1_5'UTR|ZSCAN10_uc002ctw.1_Intron|ZSCAN10_uc002ctx.1_Silent_p.Q85Q	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	157	Pro-rich.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGAATGTCTTCTGGGGCCCCG	0.662													13	13					0	0	0.002450	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3142166	3142166	+	Missense_Mutation	SNP	C	T	T	rs149971053		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3142166C>T	uc002ctv.1	-	2	471	c.383G>A	c.(382-384)CGA>CAA	p.R128Q	ZSCAN10_uc002cty.1_5'UTR|ZSCAN10_uc002ctw.1_Intron|ZSCAN10_uc002ctx.1_Missense_Mutation_p.R56Q	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	128	Pro-rich.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TGGCTGGGGTCGGGGAGGCTC	0.652													11	16					0	0	0.001368	0	0
OR1F1	4992	broad.mit.edu	37	16	3254585	3254585	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3254585C>T	uc010uwu.1	+	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGACAATTTCCTCCTAGCTG	0.502													45	89					0	0	0.002522	0	0
MEFV	4210	broad.mit.edu	37	16	3299603	3299603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3299603C>T	uc002cun.1	-	3	1128	c.1088G>A	c.(1087-1089)AGC>AAC	p.S363N		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	363					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	GCTTCCCGGGCTCTTCCTTTC	0.647													17	13					0	0	0.004990	0	0
MEFV	4210	broad.mit.edu	37	16	3306475	3306475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3306475G>A	uc002cun.1	-	1	153	c.113C>T	c.(112-114)TCC>TTC	p.S38F		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	38	DAPIN.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	GGGGATCCTGGAGTGCTCCTT	0.587													35	47					0	0	0.002445	0	0
TIGD7	91151	broad.mit.edu	37	16	3349419	3349419	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:3349419C>T	uc002cus.2	-	1	1982	c.1196G>A	c.(1195-1197)TGG>TAG	p.W399*	ZNF263_uc002cur.2_3'UTR	NM_033208	NP_149985	Q6NT04	TIGD7_HUMAN	tigger transposable element derived 7	399	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						AAGATTTTCCCATGCATTTGC	0.313													52	74					0	0	0.003610	0	0
CORO7	79585	broad.mit.edu	37	16	4409336	4409336	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:4409336G>A	uc002cwh.3	-	23	2421	c.2301C>T	c.(2299-2301)TTC>TTT	p.F767F	CORO7_uc002cwe.2_RNA|CORO7_uc002cwf.2_Silent_p.F767F|CORO7_uc002cwg.3_Silent_p.F547F|CORO7_uc010uxh.1_Silent_p.F749F|CORO7_uc010uxi.1_Silent_p.F682F|CORO7_uc002cwi.1_Silent_p.F547F	NM_024535	NP_078811	P57737	CORO7_HUMAN	coronin 7	767	WD 8.					cytoplasmic membrane-bounded vesicle|cytosol|Golgi membrane|integral to membrane of membrane fraction|soluble fraction					0						TGCACTCCAGGAAGAAAGGGG	0.667											OREG0023580	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	20					0	0	0.001984	0	0
ANKS3	124401	broad.mit.edu	37	16	4780033	4780033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:4780033G>A	uc002cxj.1	-	3	413	c.118C>T	c.(118-120)CAC>TAC	p.H40Y	ANKS3_uc002cxi.1_5'Flank|ANKS3_uc002cxk.2_5'UTR|ANKS3_uc002cxl.2_5'UTR|ANKS3_uc010uxs.1_Intron|ANKS3_uc002cxm.2_5'UTR	NM_133450	NP_597707	Q6ZW76	ANKS3_HUMAN	ankyrin repeat and sterile alpha motif domain	40	ANK 1.										0						GCAGCTGTGTGAAGATCCAGG	0.582													39	57					0	0	0.001287	0	0
USP7	7874	broad.mit.edu	37	16	8995939	8995939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:8995939G>A	uc002czl.2	-	18	2246	c.2047C>T	c.(2047-2049)CAT>TAT	p.H683Y	USP7_uc010uyk.1_Missense_Mutation_p.H584Y|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.H584Y|USP7_uc002czk.2_Missense_Mutation_p.H667Y|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	683	Interaction with ICP0/VMW110.				interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						GGGCACTTACGATCTTTATCA	0.483													23	37					0	0	0.002780	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857186	9857186	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:9857186C>T	uc002czo.3	-	13	4763	c.4215G>A	c.(4213-4215)TTG>TTA	p.L1405L	GRIN2A_uc010uym.1_Silent_p.L1405L|GRIN2A_uc010uyn.1_3'UTR|GRIN2A_uc002czr.3_3'UTR	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1405	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCGTTGACCTCAAGGACGACC	0.498													21	34					0	0	0.002780	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857582	9857582	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:9857582C>T	uc002czo.3	-	13	4367	c.3819G>A	c.(3817-3819)CAG>CAA	p.Q1273Q	GRIN2A_uc010uym.1_Silent_p.Q1273Q|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1273	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGGCATTGTTCTGTGCCCAGT	0.512													26	22					0	0	0.005443	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857805	9857806	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:9857805_9857806GG>AT	uc002czo.3	-	13	4143_4144	c.3595_3596CC>AT	c.(3595-3597)CCG>ATG	p.P1199M	GRIN2A_uc010uym.1_Missense_Mutation_p.P1199M|GRIN2A_uc010uyn.1_Missense_Mutation_p.P1042M|GRIN2A_uc002czr.3_Missense_Mutation_p.P1199M	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1199	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTCACTGTGCGGGGAACCCTTG	0.535													59	144					0	0	0.004672	0	0
GRIN2A	2903	broad.mit.edu	37	16	9862887	9862887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:9862887C>T	uc002czo.3	-	12	2964	c.2416G>A	c.(2416-2418)GAG>AAG	p.E806K	GRIN2A_uc010uym.1_Missense_Mutation_p.E806K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E649K|GRIN2A_uc002czr.3_Missense_Mutation_p.E806K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	806	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTCATCACCTCGTTCTTCTCG	0.552													24	37					0	0	0.001512	0	0
CLEC16A	23274	broad.mit.edu	37	16	11063148	11063148	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:11063148C>T	uc002dao.2	+	4	704	c.474C>T	c.(472-474)GTC>GTT	p.V158V	CLEC16A_uc002dan.3_Silent_p.V158V	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	158										ovary(1)|central_nervous_system(1)	2						ACCACACTGTCCATTTCTTTT	0.373													5	19					0	0	0.000602	0	0
CLEC16A	23274	broad.mit.edu	37	16	11114066	11114066	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:11114066C>T	uc002dao.2	+	12	1550	c.1320C>T	c.(1318-1320)ATC>ATT	p.I440I	CLEC16A_uc002dan.3_Silent_p.I422I	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	440								p.0?(1)		ovary(1)|central_nervous_system(1)	2						AGATGGTGATCATGGAGCGTA	0.537													16	37					0	0	0.000958	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11846618	11846618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:11846618G>A	uc002dbk.2	-	21	2831	c.2633C>T	c.(2632-2634)TCC>TTC	p.S878F	ZC3H7A_uc002dbh.2_Missense_Mutation_p.S18F|ZC3H7A_uc002dbi.2_Missense_Mutation_p.S66F|ZC3H7A_uc002dbj.2_RNA|ZC3H7A_uc002dbl.2_Missense_Mutation_p.S878F	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	878	C2H2-type.					nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GTGCTTCTCGGAGGAGATGTG	0.498													25	32					0	0	0.004656	0	0
PARN	5073	broad.mit.edu	37	16	14704660	14704660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:14704660G>A	uc010uzd.1	-	7	537	c.395C>T	c.(394-396)CCA>CTA	p.P132L	PARN_uc010uzc.1_Missense_Mutation_p.P71L|PARN_uc010uze.1_Missense_Mutation_p.P86L|PARN_uc010uzf.1_Intron|PARN_uc010uzg.1_RNA	NM_002582	NP_002573	O95453	PARN_HUMAN	poly(A)-specific ribonuclease (deadenylation	132					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			ovary(2)	2						ATTTAAATATGGAATTCCTAA	0.348													22	55					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	16	14859211	14859211	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:14859211C>T	uc010uzi.1	-	1		c.92G>A			uc002dct.2_Missense_Mutation_p.P332S					Homo sapiens hypothetical protein LOC339047, mRNA (cDNA clone IMAGE:4184431), with apparent retained intron.																		CAAGACACCTCCCAAGTGTGT	0.458													5	13					0	0	0.003163	0	0
C16orf45	89927	broad.mit.edu	37	16	15661858	15661858	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:15661858C>T	uc002ddo.2	+	3	435	c.249C>T	c.(247-249)CTC>CTT	p.L83L	C16orf45_uc002ddp.2_Silent_p.L66L	NM_033201	NP_149978	Q96MC5	CP045_HUMAN	hypothetical protein LOC89927 isoform 1	83										ovary(1)	1						ACATCCAGCTCTGCAAGGACA	0.517													9	10					0	0	0.000978	0	0
KIAA0430	9665	broad.mit.edu	37	16	15710936	15710936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:15710936G>A	uc002ddr.2	-	15	3243	c.3050C>T	c.(3049-3051)ACC>ATC	p.T1017I	KIAA0430_uc002ddq.2_Missense_Mutation_p.T851I|KIAA0430_uc010uzv.1_Missense_Mutation_p.T1013I|KIAA0430_uc010uzw.1_Missense_Mutation_p.T1016I	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1016						peroxisome	nucleotide binding|RNA binding				0						GCCCTCGTGGGTCTGGAGAAG	0.453													27	30					0	0	0.001061	0	0
KIAA0430	9665	broad.mit.edu	37	16	15728713	15728713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:15728713G>A	uc002ddr.2	-	4	1100	c.907C>T	c.(907-909)CTT>TTT	p.L303F	KIAA0430_uc002ddq.2_Missense_Mutation_p.L302F|KIAA0430_uc010uzv.1_Missense_Mutation_p.L302F|KIAA0430_uc010uzw.1_Missense_Mutation_p.L302F|KIAA0430_uc010uzx.1_3'UTR	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	302						peroxisome	nucleotide binding|RNA binding				0						GGGACAGCAAGAGGTGCAGGT	0.438													40	70					0	0	0.002222	0	0
MYH11	4629	broad.mit.edu	37	16	15872668	15872668	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:15872668C>T	uc002ddy.2	-	7	866	c.759G>A	c.(757-759)ACG>ACA	p.T253T	MYH11_uc002ddv.2_Silent_p.T260T|MYH11_uc002ddw.2_Silent_p.T253T|MYH11_uc002ddx.2_Silent_p.T260T|MYH11_uc010bvg.2_Silent_p.T85T|MYH11_uc002dea.1_5'UTR	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	253	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CGATGTAACCCGTGACGTCGA	0.562			T	CBFB	AML								15	32					0	0	0.001882	0	0
ABCC1	4363	broad.mit.edu	37	16	16101672	16101673	+	Splice_Site	DNP	GG	AT	AT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:16101672_16101673GG>AT	uc010bvi.2	+	2	224	c.49_splice	c.e2-1	p.D17_splice	ABCC1_uc010bvj.2_Splice_Site_p.D17_splice|ABCC1_uc010bvk.2_Splice_Site_p.D17_splice|ABCC1_uc010bvl.2_Splice_Site_p.D17_splice|ABCC1_uc010bvm.2_Splice_Site_p.D17_splice|ABCC1_uc002del.3_5'Flank	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1						hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TGTGTTCGCAGGACTGGAATGT	0.559													13	24					0	0	0.004672	0	0
ABCC6	368	broad.mit.edu	37	16	16286741	16286741	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:16286741G>A	uc002den.3	-	11	1414	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Silent_p.F471F	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	459	Helical; Name=9; (By similarity).|ABC transmembrane type-1 1.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GGAGGCTCAGGAAGACAGCGA	0.547													18	38					0	0	0.003330	0	0
ABCC6	368	broad.mit.edu	37	16	16297332	16297332	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:16297332G>A	uc002den.3	-	8	970	c.933C>T	c.(931-933)TTC>TTT	p.F311F	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Silent_p.F323F	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	311	ABC transmembrane type-1 1.|Helical; Name=6; (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TCCCCAGGAGGAAGGTAGAAT	0.592													29	48					0	0	0.002096	0	0
SMG1	23049	broad.mit.edu	37	16	18839433	18839433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:18839433G>A	uc002dfm.2	-	55	10024	c.9661C>T	c.(9661-9663)CCA>TCA	p.P3221S	SMG1_uc010bwb.2_Missense_Mutation_p.P3081S|SMG1_uc010bwa.2_Missense_Mutation_p.P1952S	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	3221					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						GCAGACCGTGGGGGAGGTGTG	0.418													9	13					0	0	0.000443	0	0
TMC7	79905	broad.mit.edu	37	16	19051670	19051670	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:19051670G>A	uc002dfq.2	+	9	1369	c.1239G>A	c.(1237-1239)GTG>GTA	p.V413V	TMC7_uc010vao.1_Missense_Mutation_p.D408N|TMC7_uc002dfp.2_Silent_p.V413V|TMC7_uc010vap.1_Silent_p.V303V	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	413	Helical; (Potential).					integral to membrane				skin(2)|ovary(1)	3						CGTCTATTGTGATCACGCTGG	0.413													29	40					0	0	0.001786	0	0
TMC5	79838	broad.mit.edu	37	16	19451968	19451968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:19451968G>A	uc002dgc.3	+	3	1357	c.608G>A	c.(607-609)GGA>GAA	p.G203E	TMC5_uc010vaq.1_Missense_Mutation_p.G203E|TMC5_uc002dgb.3_Missense_Mutation_p.G203E|TMC5_uc010var.1_Missense_Mutation_p.G203E	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	203	Extracellular (Potential).					integral to membrane				skin(1)	1						GACTCTCTGGGAAAGCCTGAT	0.473													24	50					0	0	0.003330	0	0
ACSM5	54988	broad.mit.edu	37	16	20442628	20442628	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:20442628C>T	uc002dhe.2	+	10	1440	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	431					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CCTTCTGTTTCTTCAATTGCT	0.388													47	77					0	0	0.003610	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554476	20554476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:20554476C>T	uc002dhj.3	-	12	1600	c.1390G>A	c.(1390-1392)GAT>AAT	p.D464N	ACSM2B_uc002dhk.3_Missense_Mutation_p.D464N|ACSM2B_uc010bwf.1_Missense_Mutation_p.D464N	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	464					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TTAATGATATCATCTGCCCGT	0.507													67	242					0	0	0.003610	0	0
ACSM2B	348158	broad.mit.edu	37	16	20565207	20565207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:20565207C>T	uc002dhj.3	-	6	842	c.632G>A	c.(631-633)GGA>GAA	p.G211E	ACSM2B_uc002dhk.3_Missense_Mutation_p.G211E|ACSM2B_uc010bwf.1_Missense_Mutation_p.G211E	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	211					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TTCCTGGCTTCCAGTCTCCAC	0.507													31	40					0	0	0.004289	0	0
DNAH3	55567	broad.mit.edu	37	16	20944715	20944715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:20944715G>A	uc010vbe.1	-	62	12112	c.12112C>T	c.(12112-12114)CTC>TTC	p.L4038F	DNAH3_uc010vbd.1_Missense_Mutation_p.L1473F	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	4038					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATTTTGGGGAGAGATTCCCCA	0.498													40	53					0	0	0.001485	0	0
DNAH3	55567	broad.mit.edu	37	16	20981148	20981148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:20981148C>T	uc010vbe.1	-	52	8424	c.8424G>A	c.(8422-8424)ATG>ATA	p.M2808I	DNAH3_uc010vbd.1_Missense_Mutation_p.M243I	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2808	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCTCTGGCTTCATCCCTTTCA	0.607													46	60					0	0	0.003610	0	0
ANKS4B	257629	broad.mit.edu	37	16	21261089	21261089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:21261089C>T	uc010bwp.1	+	2	245	c.202C>T	c.(202-204)CCT>TCT	p.P68S	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	68	ANK 2.									ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		GGGAAACACTCCTCTACATTT	0.473													14	26					0	0	0.000958	0	0
NPIPL3	23117	broad.mit.edu	37	16	21416211	21416211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:21416211G>A	uc002dix.1	-	9	1228	c.1046C>T	c.(1045-1047)CCC>CTC	p.P349L	uc002diq.3_Intron|NPIPL3_uc010bws.2_Missense_Mutation_p.P349L|uc010bwt.1_RNA|NPIPL3_uc010vbg.1_Missense_Mutation_p.P330L|LOC100271836_uc002diu.1_RNA|NPIPL3_uc010bwu.1_Missense_Mutation_p.P166L	NM_130464	NP_569731	Q92617	NPPL3_HUMAN	nuclear pore complex interacting protein-like 3	349						integral to membrane					0						gggtggaAGGGGAGTGAGTAG	0.448													11	44					0	0	0.004007	0	0
IGSF6	10261	broad.mit.edu	37	16	21658637	21658637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:21658637C>T	uc002djg.1	-	2	297	c.244G>A	c.(244-246)GGG>AGG	p.G82R	uc002diq.3_Intron|METTL9_uc002dje.2_Intron|METTL9_uc002djf.2_Intron|IGSF6_uc010vbi.1_Missense_Mutation_p.G82R	NM_005849	NP_005840	O95976	IGSF6_HUMAN	immunoglobulin superfamily, member 6 precursor	82	Extracellular (Potential).|Ig-like C2-type.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0				GBM - Glioblastoma multiforme(48;0.066)		CTTTTGCACCCGTCCAAGCAC	0.507													13	33					0	0	0.003163	0	0
OTOA	146183	broad.mit.edu	37	16	21734277	21734277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:21734277C>T	uc002djh.2	+	17	1859	c.1858C>T	c.(1858-1860)CCT>TCT	p.P620S	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.P541S|OTOA_uc002dji.2_Missense_Mutation_p.P296S|OTOA_uc010vbk.1_Missense_Mutation_p.P268S	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	634					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GTCTATGCCACCTTTCCTCTT	0.438													21	23					0	0	0.002780	0	0
OTOA	146183	broad.mit.edu	37	16	21747593	21747593	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:21747593C>T	uc002djh.2	+	21	2314	c.2313C>T	c.(2311-2313)ATC>ATT	p.I771I	uc002diq.3_Intron|OTOA_uc010vbj.1_Silent_p.I692I|OTOA_uc002dji.2_Silent_p.I447I|OTOA_uc010vbk.1_Silent_p.I419I	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	785					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		TTCCTGAGATCCTTCTGCAAG	0.418													23	26					0	0	0.004656	0	0
EEF2K	29904	broad.mit.edu	37	16	22269973	22269973	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:22269973C>T	uc002dki.2	+	10	1673	c.1188C>T	c.(1186-1188)TCC>TCT	p.S396S	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	396					insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		TCCCTTCTTCCCCATCTTCGG	0.607													19	25					0	0	0.001882	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226032	23226032	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:23226032G>A	uc002dlm.1	+	12	1633	c.1494_splice	c.e12-1	p.K498_splice		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma						excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	GAATTTTGCAGGACAGACTTG	0.512													21	25					0	0	0.002780	0	0
SCNN1B	6338	broad.mit.edu	37	16	23360097	23360097	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:23360097C>T	uc002dln.2	+	2	353	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	59	Helical; (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	CCCTGCTCTTCGCCGCCCTCG	0.597													13	10					0	0	0.002450	0	0
SCNN1B	6338	broad.mit.edu	37	16	23379199	23379199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:23379199C>T	uc002dln.2	+	5	975	c.799C>T	c.(799-801)CCT>TCT	p.P267S		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	267	Extracellular (By similarity).		P -> L (in BESC1; decreased channel activity).		excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	CATCTTCTACCCTCACTATGG	0.517													31	50					0	0	0.003271	0	0
COG7	91949	broad.mit.edu	37	16	23444872	23444872	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:23444872A>G	uc002dlo.2	-	6	992	c.804T>C	c.(802-804)GCT>GCC	p.A268A		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	268					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		TTACCTGTGTAGCCCACTGGA	0.547													21	38					0	0	0.003954	0	0
CACNG3	10368	broad.mit.edu	37	16	24366154	24366154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:24366154G>A	uc002dmf.2	+	3	1496	c.296G>A	c.(295-297)CGA>CAA	p.R99Q		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	99					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CTCTCCGCAGGAGCTGTGAGG	0.637													16	28					0	0	0.004007	0	0
SLC5A11	115584	broad.mit.edu	37	16	24873930	24873930	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:24873930G>A	uc002dmu.2	+	3	376	c.144G>A	c.(142-144)GTG>GTA	p.V48V	SLC5A11_uc002dms.2_5'UTR|SLC5A11_uc010vcd.1_Silent_p.V48V|SLC5A11_uc002dmt.2_5'UTR|SLC5A11_uc010vce.1_Silent_p.V48V|SLC5A11_uc010bxt.2_5'UTR	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	48	Helical; (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		AGTCCACAGTGAAGACCAAAA	0.478													11	38					0	0	0.001368	0	0
SLC5A11	115584	broad.mit.edu	37	16	24883514	24883514	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:24883514T>C	uc002dmu.2	+	5	578	c.346T>C	c.(346-348)TTC>CTC	p.F116L	SLC5A11_uc002dms.2_Missense_Mutation_p.F52L|SLC5A11_uc010vcd.1_Missense_Mutation_p.F116L|SLC5A11_uc002dmt.2_Missense_Mutation_p.F52L|SLC5A11_uc010vce.1_Missense_Mutation_p.F81L|SLC5A11_uc010bxt.2_Missense_Mutation_p.F52L	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	116	Helical; (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		GGCCTGGATCTTCCTACCCAT	0.517													90	164					0	0	0.003610	0	0
ARHGAP17	55114	broad.mit.edu	37	16	24950850	24950850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:24950850G>A	uc002dnb.2	-	17	1652	c.1559C>T	c.(1558-1560)TCC>TTC	p.S520F	ARHGAP17_uc002dmy.2_5'Flank|ARHGAP17_uc002dmz.2_Missense_Mutation_p.S44F|ARHGAP17_uc002dna.2_Missense_Mutation_p.S247F|ARHGAP17_uc002dnc.2_Intron|ARHGAP17_uc010vcf.1_Intron	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	520					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		GAAAGCGGGGGATATGTGCTT	0.592													4	8					0	0	0.000248	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147171	26147171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:26147171G>A	uc002dof.2	+	2	1365	c.973G>A	c.(973-975)GAT>AAT	p.D325N		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	325	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		CGGGCTGATCGATGCTTCCTG	0.542													62	68					0	0	0.003610	0	0
GTF3C1	2975	broad.mit.edu	37	16	27480632	27480632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:27480632G>A	uc002dov.1	-	32	5094	c.5054C>T	c.(5053-5055)CCC>CTC	p.P1685L	GTF3C1_uc002dou.2_Missense_Mutation_p.P1685L	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1685						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GAGCCGGGCGGGCACAGGGGT	0.657													8	5					0	0	0.004482	0	0
GTF3C1	2975	broad.mit.edu	37	16	27506184	27506184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:27506184G>A	uc002dov.1	-	16	2718	c.2678C>T	c.(2677-2679)CCA>CTA	p.P893L	GTF3C1_uc002dou.2_Missense_Mutation_p.P893L	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	893						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CCTGTGGACTGGGATTGGGGG	0.567													9	16					0	0	0.000673	0	0
ATP2A1	487	broad.mit.edu	37	16	28892244	28892244	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:28892244C>T	uc002dro.1	+	4	412	c.228C>T	c.(226-228)GCC>GCT	p.A76A	uc010vct.1_Intron|ATP2A1_uc002drn.1_Silent_p.A76A|ATP2A1_uc002drp.1_5'UTR	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	76	Lumenal (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGGTGCTGGCCTGGTTTGAGG	0.522													26	33					0	0	0.005443	0	0
KIF22	3835	broad.mit.edu	37	16	29814139	29814139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:29814139C>T	uc002dts.3	+	9	1354	c.1330C>T	c.(1330-1332)CTC>TTC	p.L444F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Missense_Mutation_p.L376F|KIF22_uc010vdw.1_Missense_Mutation_p.L376F|KIF22_uc010bzf.2_Missense_Mutation_p.L376F|KIF22_uc002dtt.1_5'Flank|KIF22_uc002frc.1_5'Flank	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	444				APASASQKLSPLQKLSSMDPAMLERLLSLDRLLASQGSQ -> SSSLCLPETQPPTEAKAAWTRPCGAPPQLGPSACLPGE P (in Ref. 2; BAA33063).	blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						GGAGCGCCTCCTCAGCTTGGA	0.602													21	43					0	0	0.002780	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29891226	29891226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:29891226G>A	uc002duq.3	-	9	1772	c.1532C>T	c.(1531-1533)CCC>CTC	p.P511L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.P441L|SEZ6L2_uc002dur.3_Missense_Mutation_p.P441L|SEZ6L2_uc002dus.3_Missense_Mutation_p.P397L|SEZ6L2_uc010vec.1_Missense_Mutation_p.P511L|SEZ6L2_uc010ved.1_Missense_Mutation_p.P467L	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	511	Sushi 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GGGTTCTGTGGGATCCACACA	0.622													52	79					0	0	0.003610	0	0
TAOK2	9344	broad.mit.edu	37	16	29998371	29998372	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:29998371_29998372CC>TT	uc002dva.1	+	16	3561_3562	c.2778_2779CC>TT	c.(2776-2781)ATCCCT>ATTTCT	p.P927S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.P934S|TAOK2_uc002dvd.1_Missense_Mutation_p.P754S	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	927					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						CCCCCGACATCCCTCCTGAACC	0.649													37	65					0	0	0.004672	0	0
TAOK2	9344	broad.mit.edu	37	16	30002405	30002405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:30002405C>T	uc002dvc.1	+	19	3449	c.2666C>T	c.(2665-2667)TCC>TTC	p.S889F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron	NM_004783	NP_004774	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						ACAGGACGCTCCGAGCGAATC	0.662													22	27					0	0	0.002780	0	0
ITGAL	3683	broad.mit.edu	37	16	30486649	30486649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:30486649G>A	uc002dyi.3	+	3	363	c.187G>A	c.(187-189)GAG>AAG	p.E63K	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Missense_Mutation_p.E63K|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	63	FG-GAP 1.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	AGCTCCAGGGGAGGGGAACAG	0.597													33	67					0	0	0.004878	0	0
PRR14	78994	broad.mit.edu	37	16	30664712	30664712	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:30664712C>T	uc002dyy.2	+	6	789	c.531C>T	c.(529-531)TTC>TTT	p.F177F	PRR14_uc002dyz.2_Silent_p.F22F|PRR14_uc002dza.2_Silent_p.F177F|PRR14_uc002dzb.1_5'Flank	NM_024031	NP_076936	Q9BWN1	PRR14_HUMAN	proline rich 14	177	Pro-rich.										0			Colorectal(24;0.103)			CCCCCAACTTCATCATCCCAG	0.532													24	36					0	0	0.001061	0	0
SRCAP	10847	broad.mit.edu	37	16	30740727	30740728	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:30740727_30740728CC>TT	uc002dze.1	+	27	6346_6347	c.5961_5962CC>TT	c.(5959-5964)CCCCCT>CCTTCT	p.P1988S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P1783S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1988					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AGGCACCTCCCCCTTCCCTGCA	0.584													7	19					0	0	0.004672	0	0
ZNF646	9726	broad.mit.edu	37	16	31087769	31087769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:31087769G>A	uc002eap.2	+	2	413	c.124G>A	c.(124-126)GAC>AAC	p.D42N	ZNF668_uc002eao.2_5'Flank	NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	42					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						TGAGGAGGCTGACAGCATCCC	0.632													32	37					0	0	0.004289	0	0
ITGAX	3687	broad.mit.edu	37	16	31367986	31367986	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:31367986C>T	uc002ebu.1	+	3	251	c.184C>T	c.(184-186)CAA>TAA	p.Q62*	ITGAX_uc010cao.1_Nonsense_Mutation_p.Q62*|ITGAX_uc002ebt.2_Nonsense_Mutation_p.Q62*	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	62	Extracellular (Potential).|FG-GAP 1.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGCTGCCAACCAAACGGGTGG	0.622													7	12					0	0	0.004482	0	0
ITGAD	3681	broad.mit.edu	37	16	31427896	31427896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:31427896G>A	uc002ebv.1	+	20	2477	c.2428G>A	c.(2428-2430)GAT>AAT	p.D810N	ITGAD_uc010cap.1_Missense_Mutation_p.D811N	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	810	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CGCAGGTGAGGATTCCTACGG	0.612													39	50					0	0	0.001706	0	0
ABCC12	94160	broad.mit.edu	37	16	48119551	48119551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:48119551C>T	uc002efc.1	-	27	4127	c.3781G>A	c.(3781-3783)GAA>AAA	p.E1261K	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1261	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				AGCTGACGTTCCCCTACTGAG	0.418													30	45					0	0	0.001287	0	0
C16orf78	123970	broad.mit.edu	37	16	49412446	49412446	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:49412446G>A	uc002efr.2	+	3	379	c.336G>A	c.(334-336)AAG>AAA	p.K112K		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	112										central_nervous_system(1)	1						TGGAGCAAAAGGGGAAACACC	0.562													9	14					0	0	0.000673	0	0
ZNF423	23090	broad.mit.edu	37	16	49669584	49669584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:49669584G>A	uc002efs.2	-	5	3777	c.3479C>T	c.(3478-3480)TCG>TTG	p.S1160L	ZNF423_uc010vgn.1_Missense_Mutation_p.S1043L	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	1160					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GGGCACTGGCGATGTCTGGGT	0.642													21	38					0	0	0.001523	0	0
ZNF423	23090	broad.mit.edu	37	16	49764731	49764731	+	Silent	SNP	G	A	A	rs138148545		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:49764731G>A	uc002efs.2	-	4	526	c.228C>T	c.(226-228)TTC>TTT	p.F76F		NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	76	C2H2-type 1; degenerate.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CCAGAGACTCGAAGTCCTGCT	0.527													47	59					0	0	0.003610	0	0
HEATR3	55027	broad.mit.edu	37	16	50100334	50100334	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:50100334G>A	uc002efw.2	+	2	357	c.195G>A	c.(193-195)CTG>CTA	p.L65L	HEATR3_uc002efx.2_Intron	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	65	HEAT 1.						binding			ovary(1)|skin(1)	2						TGGCCCGGCTGGTGCAGCAGC	0.741													9	7					0	0	0.000443	0	0
ADCY7	113	broad.mit.edu	37	16	50345624	50345624	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:50345624G>A	uc002egd.1	+	19	2643	c.2375G>A	c.(2374-2376)TGG>TAG	p.W792*		NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	792					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	AGCTGTTCCTGGAAGGACCTG	0.592													39	84					0	0	0.003610	0	0
NKD1	85407	broad.mit.edu	37	16	50659401	50659401	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:50659401C>T	uc002egg.1	+	6	596	c.372C>T	c.(370-372)CTC>CTT	p.L124L		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	124					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		TCCAGGAGCTCCAGTGCGACG	0.622													9	29					0	0	0.000978	0	0
SNX20	124460	broad.mit.edu	37	16	50707519	50707519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:50707519C>T	uc002egk.2	-	4	922	c.749G>A	c.(748-750)GGA>GAA	p.G250E	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	250					cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						GGCCCTCTCTCCGGCCGCGAA	0.751													4	10					0	0	0.000602	0	0
NOD2	64127	broad.mit.edu	37	16	50745440	50745440	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:50745440C>A	uc002egm.1	+	4	1723	c.1618C>A	c.(1618-1620)CTT>ATT	p.L540I	NOD2_uc010cbk.1_Missense_Mutation_p.L513I|NOD2_uc002egl.1_Missense_Mutation_p.L318I|NOD2_uc010cbl.1_Missense_Mutation_p.L318I|NOD2_uc010cbm.1_Missense_Mutation_p.L318I|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	540	NACHT.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				ACCCAGTCTTCTTCGGGGCCG	0.617													17	20					5.3912e-06	9.29691e-06	0.000743	1	0
SALL1	6299	broad.mit.edu	37	16	51174059	51174059	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:51174059G>A	uc010vgs.1	-	2	2105	c.2074C>T	c.(2074-2076)CAG>TAG	p.Q692*	SALL1_uc010vgr.1_Nonsense_Mutation_p.Q595*|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	692					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ACCAGTTGCTGAAGCTTGGAC	0.532													34	48					0	0	0.004289	0	0
SALL1	6299	broad.mit.edu	37	16	51174308	51174308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:51174308G>A	uc010vgs.1	-	2	1856	c.1825C>T	c.(1825-1827)CCA>TCA	p.P609S	SALL1_uc010vgr.1_Missense_Mutation_p.P512S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	609					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GCTTCCTCTGGGAGCCCACCT	0.622													12	16					0	0	0.001368	0	0
SLC12A3	6559	broad.mit.edu	37	16	56913534	56913534	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:56913534C>T	uc010ccm.2	+	11	1445	c.1416C>T	c.(1414-1416)TGC>TGT	p.C472C	SLC12A3_uc002ekd.3_Silent_p.C472C|SLC12A3_uc010ccn.2_Silent_p.C471C	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	472	Helical; (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	CCCTGGCCTGCCTTGTCTCTG	0.642													13	25					0	0	0.004007	0	0
NLRC5	84166	broad.mit.edu	37	16	57113139	57113139	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:57113139G>A	uc002ekk.1	+	45	5397	c.5172G>A	c.(5170-5172)GCG>GCA	p.A1724A	NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekq.1_Silent_p.A266A|NLRC5_uc002ekr.1_Silent_p.A611A	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1724	LRR 24.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GCAGCTTGGCGGAAAACAACC	0.617													20	30					0	0	0.003330	0	0
CCDC102A	92922	broad.mit.edu	37	16	57552139	57552139	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:57552139C>T	uc002elw.2	-	6	1302	c.1089G>A	c.(1087-1089)CGG>CGA	p.R363R		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	363	Potential.									ovary(1)	1						CTGTCTCCAGCCGCTCCCGGC	0.697													35	68					0	0	0.001706	0	0
CCDC102A	92922	broad.mit.edu	37	16	57552637	57552637	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:57552637T>A	uc002elw.2	-	5	1151	c.938A>T	c.(937-939)GAG>GTG	p.E313V		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	313	Potential.									ovary(1)	1						CTGGTGCGCCTCCTTCAGGAT	0.637													5	3					0	0	0.000602	0	0
CNOT1	23019	broad.mit.edu	37	16	58592446	58592446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:58592446G>A	uc002env.2	-	18	2556	c.2263C>T	c.(2263-2265)CCA>TCA	p.P755S	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.P755S|CNOT1_uc002enx.2_Missense_Mutation_p.P755S|CNOT1_uc002enz.1_Missense_Mutation_p.P184S	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	755					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		GAAAGGGGTGGAAATGCTTTT	0.498													11	16					0	0	0.001855	0	0
CDH8	1006	broad.mit.edu	37	16	61747770	61747770	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:61747770C>T	uc002eog.1	-	10	1881	c.1629G>A	c.(1627-1629)CCG>CCA	p.P543P		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	543	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TGGTGAAATTCGGATTGTTGA	0.333													21	31					0	0	0.001523	0	0
CDH11	1009	broad.mit.edu	37	16	65032559	65032559	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:65032559C>T	uc002eoi.2	-	4	863	c.429G>A	c.(427-429)TCG>TCA	p.S143S	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Silent_p.S143S|CDH11_uc010vin.1_Silent_p.S17S|CDH11_uc010vio.1_Silent_p.S143S	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	143	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CAATGAATTCCGACGGTGGCT	0.557			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			14	23					0	0	0.003163	0	0
CDH5	1003	broad.mit.edu	37	16	66436692	66436692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:66436692G>A	uc002eom.3	+	12	2131	c.1975G>A	c.(1975-1977)GAT>AAT	p.D659N		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	659	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		CACCAGCTACGATGTGTCGGT	0.552													4	8					0	0	0.000248	0	0
CES3	23491	broad.mit.edu	37	16	66997264	66997264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:66997264G>A	uc002eqt.2	+	2	338	c.265G>A	c.(265-267)GAT>AAT	p.D89N	CES3_uc010cdz.2_Missense_Mutation_p.D89N|CES3_uc010cea.2_RNA	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	89						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		GGGTGTGCGGGATGCCAGCAC	0.632													21	30					0	0	0.002299	0	0
KIAA0895L	653319	broad.mit.edu	37	16	67214354	67214354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:67214354G>A	uc002ert.2	-	2	935	c.160C>T	c.(160-162)CCC>TCC	p.P54S	KIAA0895L_uc002err.2_5'Flank|KIAA0895L_uc002ers.2_5'Flank|KIAA0895L_uc002eru.2_Missense_Mutation_p.P54S|EXOC3L_uc002erv.1_RNA	NM_001040715	NP_001035805	Q68EN5	K895L_HUMAN	hypothetical protein LOC653319	54	Pro-rich.										0						AGCGCTGGGGGGACTGCCAGA	0.652													14	17					0	0	0.002450	0	0
SLC7A6	9057	broad.mit.edu	37	16	68309089	68309089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:68309089C>T	uc002evt.1	+	4	769	c.460C>T	c.(460-462)CCG>TCG	p.P154S	SLC7A6_uc010cfb.1_RNA|SLC7A6_uc002evu.1_Missense_Mutation_p.P154S|SLC7A6_uc002evv.1_RNA|SLC7A6_uc010cfc.1_RNA	NM_001076785	NP_001070253	Q92536	YLAT2_HUMAN	solute carrier family 7 (cationic amino acid	154	Extracellular (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|antiporter activity			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.034)|Epithelial(162;0.0948)		CATCATCCAGCCGTCCTTCCC	0.587													31	46					0	0	0.003755	0	0
SMPD3	55512	broad.mit.edu	37	16	68405192	68405192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:68405192G>A	uc002ewa.2	-	3	1315	c.893C>T	c.(892-894)TCC>TTC	p.S298F	SMPD3_uc010cfe.2_Missense_Mutation_p.S298F|SMPD3_uc010vlh.1_Missense_Mutation_p.S298F	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	298	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	GGACTCCCGGGAGGCCGAGGG	0.692													13	16					0	0	0.001368	0	0
SMPD3	55512	broad.mit.edu	37	16	68405554	68405554	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:68405554G>A	uc002ewa.2	-	3	953	c.531C>T	c.(529-531)ACC>ACT	p.T177T	SMPD3_uc010cfe.2_Silent_p.T177T|SMPD3_uc010vlh.1_Silent_p.T177T	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	177	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	CGCTGATGGAGGTATTGGTGG	0.627													6	22					0	0	0.001984	0	0
CDH1	999	broad.mit.edu	37	16	68857521	68857521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:68857521C>T	uc002ewg.1	+	13	2280	c.2156C>T	c.(2155-2157)GCT>GTT	p.A719V	CDH1_uc010vlj.1_RNA|CDH1_uc010cfg.1_Missense_Mutation_p.A658V	NM_004360	NP_004351	P12830	CADH1_HUMAN	cadherin 1, type 1 preproprotein	719	Helical; (Potential).				adherens junction organization|cellular component disassembly involved in apoptosis|cellular response to indole-3-methanol|cellular response to lithium ion|homophilic cell adhesion|negative regulation of cell-cell adhesion|positive regulation of transcription factor import into nucleus|positive regulation of transcription, DNA-dependent|regulation of immune response	actin cytoskeleton|aggresome|apical junction complex|catenin complex|cell-cell adherens junction|endosome|focal adhesion|Golgi apparatus|integral to membrane|internal side of plasma membrane|lateral plasma membrane|perinuclear region of cytoplasm	cell adhesion molecule binding|gamma-catenin binding			breast(148)|stomach(71)|biliary_tract(8)|endometrium(3)|soft_tissue(2)|large_intestine(2)|urinary_tract(2)|oesophagus(2)|ovary(2)|thyroid(1)|central_nervous_system(1)|lung(1)	243		all_neural(199;0.0189)|Ovarian(137;0.0563)		Epithelial(162;8.44e-05)|all cancers(182;0.000404)|OV - Ovarian serous cystadenocarcinoma(108;0.000426)|BRCA - Breast invasive adenocarcinoma(181;0.0261)		GGAATTCTTGCTTTGCTAAGT	0.438			Mis|N|F|S		lobular breast|gastric	gastric			Hereditary_Diffuse_Gastric_Cancer				13	25					0	0	0.001368	0	0
NQO1	1728	broad.mit.edu	37	16	69745056	69745057	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:69745056_69745057CC>AA	uc002exp.2	-	6	838_839	c.647_648GG>TT	c.(646-648)TGG>TTT	p.W216F	NQO1_uc010cfm.2_Missense_Mutation_p.W195F|NQO1_uc002exq.2_Missense_Mutation_p.W182F|NQO1_uc002exr.2_Missense_Mutation_p.W178F|NQO1_uc010vll.1_Missense_Mutation_p.W144F	NM_000903	NP_000894	P15559	NQO1_HUMAN	NAD(P)H menadione oxidoreductase 1,	216					nitric oxide biosynthetic process|regulation of cellular amino acid metabolic process|response to toxin|synaptic transmission, cholinergic|xenobiotic metabolic process	cytosol	coenzyme binding|cytochrome-b5 reductase activity|electron carrier activity|NAD(P)H dehydrogenase (quinone) activity				0					Dicumarol(DB00266)|Menadione(DB00170)	GTGTCTCATCCCAAATATTCTC	0.446													8	173					0	0	0.004672	0	0
NOB1	28987	broad.mit.edu	37	16	69778779	69778779	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:69778779G>A	uc002exs.2	-	8	982	c.966C>T	c.(964-966)CTC>CTT	p.L322L		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	322						nucleus	metal ion binding|protein binding				0						CACTCACCCGGAGGCCGCGGG	0.577													10	13					0	0	0.001368	0	0
FUK	197258	broad.mit.edu	37	16	70506488	70506488	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:70506488C>T	uc002eyy.2	+	14	1444	c.1386C>T	c.(1384-1386)TTC>TTT	p.F462F	FUK_uc010cft.2_Silent_p.F494F|FUK_uc002eyz.2_5'UTR	NM_145059	NP_659496	Q8N0W3	FUK_HUMAN	fucokinase	462						cytoplasm	ATP binding|fucokinase activity			ovary(1)	1		Ovarian(137;0.0694)				GGAGTGAATTCTTCAAGAGGA	0.607													5	9					0	0	0.001168	0	0
SF3B3	23450	broad.mit.edu	37	16	70562829	70562829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:70562829C>T	uc002ezf.2	+	3	335	c.124C>T	c.(124-126)CGC>TGC	p.R42C	SNORD111B_uc010cfv.1_5'Flank	NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	42					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				GGAGCTGCTTCGCCCAGACCC	0.443													30	21					0	0	0.004289	0	0
SF3B3	23450	broad.mit.edu	37	16	70605667	70605668	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:70605667_70605668CC>TT	uc002ezf.2	+	26	3816_3817	c.3605_3606CC>TT	c.(3604-3606)CCC>CTT	p.P1202L		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	1202					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				CGAACCCCACCCGAAGTGTCCA	0.51													20	18					0	0	0.004672	0	0
SF3B3	23450	broad.mit.edu	37	16	70605710	70605710	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:70605710C>T	uc002ezf.2	+	26	3859	c.3648C>T	c.(3646-3648)GCC>GCT	p.A1216A		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	1216					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				CCCGCTACGCCTTCTGAGCCC	0.562													10	27					0	0	0.000978	0	0
HYDIN	54768	broad.mit.edu	37	16	70866801	70866801	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:70866801G>A	uc002ezr.2	-	80	13974	c.13846C>T	c.(13846-13848)CTG>TTG	p.L4616L	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4617										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTTAGACTCAGAGGACTGCCT	0.557													14	20					0	0	0.003954	0	0
HYDIN	54768	broad.mit.edu	37	16	70871596	70871596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:70871596C>T	uc002ezr.2	-	77	13364	c.13236G>A	c.(13234-13236)ATG>ATA	p.M4412I	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4413										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTGTTACCTTCATTTTGGTAC	0.488													26	33					0	0	0.005443	0	0
HYDIN	54768	broad.mit.edu	37	16	70917925	70917925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:70917925C>T	uc002ezr.2	-	59	10002	c.9874G>A	c.(9874-9876)GGA>AGA	p.G3292R		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3293										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TCACACTTTCCCATGGCGTCA	0.562													22	23					0	0	0.002780	0	0
HYDIN	54768	broad.mit.edu	37	16	71113793	71113793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:71113793G>A	uc002ezr.2	-	13	1861	c.1733C>T	c.(1732-1734)TCC>TTC	p.S578F	HYDIN_uc010cfz.1_Missense_Mutation_p.S323F|HYDIN_uc002ezv.2_Missense_Mutation_p.S578F|HYDIN_uc010vmc.1_Missense_Mutation_p.S595F|HYDIN_uc010vmd.1_Missense_Mutation_p.S605F|HYDIN_uc002ezw.3_Missense_Mutation_p.S595F	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	578										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTCACCAAAGGAAACATCACC	0.438													5	8					0	0	0.001984	0	0
TAT	6898	broad.mit.edu	37	16	71602055	71602055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:71602055C>T	uc002fap.2	-	12	1456	c.1357G>A	c.(1357-1359)GAT>AAT	p.D453N		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	453					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	GCCTATTTATCACACTCCTCC	0.582													13	34					0	0	0.003163	0	0
TAT	6898	broad.mit.edu	37	16	71604186	71604186	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:71604186G>C	uc002fap.2	-	9	1126	c.1027C>G	c.(1027-1029)CTG>GTG	p.L343V		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	343					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	AGGAAGCTCAGAGTGTTGTGG	0.527													18	25					0	0	0.001523	0	0
HP	3240	broad.mit.edu	37	16	72094655	72094655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:72094655G>A	uc002fbr.3	+	7	1131	c.1087G>A	c.(1087-1089)GAC>AAC	p.D363N	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Missense_Mutation_p.D304N|HP_uc002fbt.3_Missense_Mutation_p.D304N|HP_uc002fbu.1_Missense_Mutation_p.D101N|HP_uc002fbv.3_Missense_Mutation_p.D274N|HP_uc002fbw.3_Missense_Mutation_p.D185N|HP_uc002fbx.3_Missense_Mutation_p.D185N|HPR_uc002fby.2_5'Flank	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	363	Peptidase S1.				cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		TGCCGTTCACGACCTGGAGGA	0.522													38	60					0	0	0.002852	0	0
HPR	3250	broad.mit.edu	37	16	72107799	72107799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:72107799G>A	uc002fby.2	+	2	44	c.14G>A	c.(13-15)GGA>GAA	p.G5E	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	5					proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				AGTGACCTGGGAGCTGTCATT	0.443													41	57					0	0	0.003610	0	0
PMFBP1	83449	broad.mit.edu	37	16	72153731	72153731	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:72153731T>A	uc002fcc.3	-	20	3213	c.3041A>T	c.(3040-3042)CAA>CTA	p.Q1014L	PMFBP1_uc002fcd.2_Intron|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Intron	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	1014										ovary(2)	2		Ovarian(137;0.179)				CTTATTTTTTTGACAAATGGC	0.448													24	37					0	0	0.003954	0	0
PMFBP1	83449	broad.mit.edu	37	16	72188229	72188229	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:72188229A>T	uc002fcc.3	-	4	467	c.295T>A	c.(295-297)TTT>ATT	p.F99I	PMFBP1_uc002fcd.2_Missense_Mutation_p.F99I|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	99	Potential.									ovary(2)	2		Ovarian(137;0.179)				TCTGTGTGAAACTCCAGTTCT	0.473													37	54					0	0	0.004289	0	0
ZFHX3	463	broad.mit.edu	37	16	72829897	72829897	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:72829897G>A	uc002fck.2	-	9	7357	c.6684C>T	c.(6682-6684)CCC>CCT	p.P2228P	ZFHX3_uc002fcl.2_Silent_p.P1314P	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2228					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CCGGCGAAGGGGGCCGGGAGT	0.527													42	58					0	0	0.001951	0	0
ZFHX3	463	broad.mit.edu	37	16	72830485	72830485	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:72830485C>T	uc002fck.2	-	9	6769	c.6096G>A	c.(6094-6096)CTG>CTA	p.L2032L	ZFHX3_uc002fcl.2_Silent_p.L1118L	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2032					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TCTGGGGCCTCAGTGGGTACA	0.592													43	64					0	0	0.003610	0	0
WDR59	79726	broad.mit.edu	37	16	74908169	74908169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:74908169G>A	uc002fdh.1	-	26	2965	c.2863C>T	c.(2863-2865)CGG>TGG	p.R955W	WDR59_uc002fdf.1_Missense_Mutation_p.R400W|WDR59_uc002fdg.1_Missense_Mutation_p.R547W	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	955										ovary(1)|breast(1)	2						TCCTGGGTCCGAAACCACTCC	0.572													6	9					0	0	0.001168	0	0
ZNRF1	84937	broad.mit.edu	37	16	75033985	75033985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:75033985C>T	uc002fdk.2	+	1	1071	c.416C>T	c.(415-417)TCG>TTG	p.S139L	ZNRF1_uc010vmz.1_Missense_Mutation_p.S139L|ZNRF1_uc002fdl.1_Missense_Mutation_p.S139L|ZNRF1_uc010cgr.1_Missense_Mutation_p.S139L	NM_032268	NP_115644	Q8ND25	ZNRF1_HUMAN	zinc and ring finger protein 1	139						cell junction|endosome|lysosome|synaptic vesicle membrane	ligase activity|protein binding|zinc ion binding				0						TGGTTCAGCTCGCATAGTGGT	0.672													4	8					0	0	0.000602	0	0
CHST6	4166	broad.mit.edu	37	16	75513312	75513312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:75513312G>A	uc002fef.2	-	3	595	c.415C>T	c.(415-417)CCC>TCC	p.P139S	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Missense_Mutation_p.P139S	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	139	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GCGCCTCGGGGAAAGGCACTG	0.682													13	32					0	0	0.003163	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76350369	76350369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:76350369G>A	uc002feu.1	+	4	530	c.145G>A	c.(145-147)GAG>AAG	p.E49K	CNTNAP4_uc002fev.1_5'UTR|CNTNAP4_uc010chb.1_Missense_Mutation_p.E24K|CNTNAP4_uc002fex.1_Missense_Mutation_p.E52K|CNTNAP4_uc002few.2_Missense_Mutation_p.E24K	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	49	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CAGTTCTTCCGAGCTCTCCAG	0.488													17	23					0	0	0.001523	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76483656	76483656	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:76483656C>T	uc002feu.1	+	9	1357	c.972C>T	c.(970-972)TTC>TTT	p.F324F	CNTNAP4_uc002fev.1_Intron|CNTNAP4_uc010chb.1_Intron|CNTNAP4_uc002fex.1_Silent_p.F327F|CNTNAP4_uc002few.2_Silent_p.F299F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	324	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CAGTGTCATTCCCACATAGAA	0.348													6	16					0	0	0.001168	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76528864	76528864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:76528864G>A	uc002feu.1	+	16	2523	c.2138G>A	c.(2137-2139)GGA>GAA	p.G713E	CNTNAP4_uc002fev.1_Missense_Mutation_p.G577E|CNTNAP4_uc010chb.1_Missense_Mutation_p.G640E|CNTNAP4_uc002fex.1_Missense_Mutation_p.G716E|CNTNAP4_uc002few.2_Missense_Mutation_p.G688E	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	713	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						ACCTACTGGGGAGGTTCTTCG	0.423													51	72					0	0	0.003610	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353842	77353842	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:77353842G>A	uc002ffc.3	-	16	2855	c.2436C>T	c.(2434-2436)TTC>TTT	p.F812F	ADAMTS18_uc010chc.1_Silent_p.F400F|ADAMTS18_uc002ffe.1_Silent_p.F508F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	812	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CAGCGAAGGGGAACTCCCCAG	0.572													13	26					0	0	0.001368	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77356335	77356335	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:77356335C>T	uc002ffc.3	-	14	2480	c.2061G>A	c.(2059-2061)AAG>AAA	p.K687K	ADAMTS18_uc010chc.1_Silent_p.K275K|ADAMTS18_uc002ffe.1_Silent_p.K383K	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	687	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AGTTCTCAGCCTTGCAGTACA	0.388													26	43					0	0	0.004656	0	0
NUDT7	283927	broad.mit.edu	37	16	77775526	77775526	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:77775526C>T	uc010chd.2	+	4	465	c.396C>T	c.(394-396)TTC>TTT	p.F132F	NUDT7_uc010vnj.1_Silent_p.F79F	NM_001105663	NP_001099133	P0C024	NUDT7_HUMAN	nudix motif 7	132	Nudix hydrolase.				nucleoside diphosphate metabolic process	peroxisome	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|magnesium ion binding|manganese ion binding			ovary(1)|kidney(1)	2						ACCACAACTTCCAGGCCCAGC	0.438													26	36					0	0	0.005443	0	0
VAT1L	57687	broad.mit.edu	37	16	77918617	77918618	+	Missense_Mutation	DNP	GG	AA	AA	rs143077114	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:77918617_77918618GG>AA	uc002ffg.1	+	7	1092_1093	c.995_996GG>AA	c.(994-996)CGG>CAA	p.R332Q		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	332							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						GGCCTCATTCGGGGAGTGGTGG	0.51													11	12					0	0	0.004672	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064472	78064472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:78064472G>A	uc002ffh.3	+	3	409	c.328G>A	c.(328-330)GAA>AAA	p.E110K		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	110	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						GAACTCCGACGAAATCAACGC	0.478													22	25					0	0	0.002780	0	0
PKD1L2	114780	broad.mit.edu	37	16	81134836	81134836	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:81134836G>A	uc002fgh.1	-	45	7272	c.7272C>T	c.(7270-7272)TTC>TTT	p.F2424F	PKD1L2_uc002fgf.1_Silent_p.F224F|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2424	Extracellular (Potential).|Interaction with GNAS and GNAI1.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TAATGCCCAGGAAACTGAGTA	0.527													14	20					0	0	0.001855	0	0
HSD17B2	3294	broad.mit.edu	37	16	82069189	82069190	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:82069189_82069190CC>TG	uc002fgv.2	+	1	332_333	c.160_161CC>TG	c.(160-162)CCT>TGT	p.P54C		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	54					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	CATCCTGTCCCCTTTTTGGGGC	0.515													8	23					0	0	0.004672	0	0
CDH13	1012	broad.mit.edu	37	16	83065665	83065665	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:83065665A>G	uc002fgx.2	+	3	328	c.208A>G	c.(208-210)AGC>GGC	p.S70G	CDH13_uc010chh.2_Missense_Mutation_p.S70G|CDH13_uc010vns.1_Missense_Mutation_p.S117G|CDH13_uc010vnt.1_Intron|CDH13_uc010vnu.1_Missense_Mutation_p.S70G	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	70					adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TGAGGTCTCGAGCCCATACTT	0.512													7	6					0	0	0.003080	0	0
TAF1C	9013	broad.mit.edu	37	16	84213039	84213039	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:84213039G>A	uc002fhn.2	-	14	2346	c.2118C>T	c.(2116-2118)CCC>CCT	p.P706P	TAF1C_uc002fhm.2_Silent_p.P612P|TAF1C_uc010vnx.1_Silent_p.P680P|TAF1C_uc010vny.1_Silent_p.P297P|TAF1C_uc010vnz.1_Silent_p.P374P|TAF1C_uc002fho.2_Silent_p.P229P|TAF1C_uc010voa.1_Silent_p.P374P|TAF1C_uc002fhp.1_Intron	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	706					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						CGGGTGCAGGGGGTGGCTCTG	0.701													15	23					0	0	0.004007	0	0
KIAA0182	23199	broad.mit.edu	37	16	85682309	85682309	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:85682309C>T	uc002fix.2	+	3	452	c.378C>T	c.(376-378)ATC>ATT	p.I126I	KIAA0182_uc002fiw.2_Silent_p.I22I|KIAA0182_uc002fiy.2_Silent_p.I53I	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	126							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						TGGTGACCATCGCTCCAACCA	0.677													17	22					0	0	0.001216	0	0
FOXC2	2303	broad.mit.edu	37	16	86602184	86602184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:86602184G>A	uc002fjq.2	+	1	1328	c.1243G>A	c.(1243-1245)GGG>AGG	p.G415R		NM_005251	NP_005242	Q99958	FOXC2_HUMAN	forkhead box C2	415	Ala/Pro-rich.				anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|embryonic viscerocranium morphogenesis|insulin receptor signaling pathway|lymphangiogenesis|metanephros development|negative regulation of transcription from RNA polymerase II promoter|neural crest cell fate commitment|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of cell adhesion mediated by integrin|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vascular wound healing|regulation of blood vessel size|regulation of organ growth|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|ureteric bud development|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding|transcription regulatory region DNA binding				0						gccgcagcccggggccgccgc	0.299									Late-onset_Hereditary_Lymphedema				4	4					0	0	0.000602	0	0
GAS8	2622	broad.mit.edu	37	16	90104193	90104193	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:90104193C>T	uc002fqi.1	+	8	1070	c.948C>T	c.(946-948)GTC>GTT	p.V316V	GAS8_uc010vps.1_Silent_p.V291V|GAS8_uc002fqh.2_Silent_p.V233V|GAS8_uc010vpv.1_Silent_p.V287V|GAS8_uc010cjc.1_Silent_p.V233V|GAS8_uc010vpw.1_Silent_p.V233V|GAS8_uc002fqj.1_Silent_p.V124V|uc002fqm.1_5'Flank	NM_001481	NP_001472	O95995	GAS8_HUMAN	growth arrest-specific 8	316	Potential.				negative regulation of cell proliferation|sperm motility	cilium|Golgi apparatus|microtubule|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.029)		GTTTGAAAGTCAGGGAGAAAG	0.532													53	66					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	16	90161575	90161575	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr16:90161575G>A	uc002fqp.2	+	3	928	c.450G>A	c.(448-450)GGG>GGA	p.G150G	uc002fqq.2_Silent_p.G167G					Homo sapiens, Similar to tubulin, beta, 2, clone IMAGE:4873024, mRNA.																		TGGGCCAAGGGACGCTACACC	0.582													4	6					0	0	0.000602	0	0
ABR	29	broad.mit.edu	37	17	1028577	1028577	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:1028577G>C	uc002fsd.2	-	2	297	c.187C>G	c.(187-189)CGC>GGC	p.R63G	ABR_uc002fse.2_Missense_Mutation_p.R17G|ABR_uc010cjq.1_Missense_Mutation_p.R75G	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	63					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		CCCTGGCTGCGGGCGCTGAGC	0.672													3	28					0	0	0.004672	0	0
SCARF1	8578	broad.mit.edu	37	17	1542987	1542987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:1542987G>A	uc002fsz.1	-	7	1239	c.1189C>T	c.(1189-1191)CCT>TCT	p.P397S	SCARF1_uc002fsy.1_Missense_Mutation_p.P397S|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Intron	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	397	Extracellular (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CATTCACAAGGAACTGAGCAG	0.617													8	0					0	0	0.000673	0	0
SGSM2	9905	broad.mit.edu	37	17	2264968	2264969	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:2264968_2264969CC>TT	uc002fun.3	+	3	346_347	c.171_172CC>TT	c.(169-174)CGCCGT>CGTTGT	p.R58C	SGSM2_uc002fum.3_Missense_Mutation_p.R58C|SGSM2_uc010vqw.1_Missense_Mutation_p.R58C	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	58	RUN.					intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		AGCTGAGACGCCGTGCCGCTGG	0.604													22	3					0	0	0.004672	0	0
MNT	4335	broad.mit.edu	37	17	2290863	2290863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:2290863G>A	uc002fur.2	-	6	1333	c.1081C>T	c.(1081-1083)CCG>TCG	p.P361S		NM_020310	NP_064706	Q99583	MNT_HUMAN	MAX binding protein	361					multicellular organismal development|negative regulation of cell proliferation|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			skin(1)	1				Colorectal(2;1.37e-05)|READ - Rectum adenocarcinoma(2;8.68e-05)		AGCAGCTCCGGCTGGGGACGA	0.368													128	18					0	0	0.003610	0	0
METT10D	79066	broad.mit.edu	37	17	2405514	2405514	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:2405514G>A	uc002fut.2	-	2	260	c.112C>T	c.(112-114)CTG>TTG	p.L38L	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_Intron|METT10D_uc002fuv.2_Silent_p.L38L|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_5'UTR	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	38							methyltransferase activity				0						CTTCCATTCAGATTTATCTGA	0.333													61	10					0	0	0.003610	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2923814	2923814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:2923814C>T	uc010ckd.2	+	19	1766	c.1676C>T	c.(1675-1677)CCC>CTC	p.P559L	RAP1GAP2_uc010cke.2_Missense_Mutation_p.P544L	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	559					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						TCACGGAGTCCCATCAAGCGA	0.622													6	3					0	0	0.001984	0	0
OR1D4	8385	broad.mit.edu	37	17	2966465	2966465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:2966465G>A	uc010vra.1	-	1	491	c.491C>T	c.(490-492)TCC>TTC	p.S164F		NM_003552	NP_003543			olfactory receptor, family 1, subfamily D,												0						CCAACACAAGGAGAGGAGCAA	0.587													8	8					0	0	0.000978	0	0
OR1E1	8387	broad.mit.edu	37	17	3301102	3301102	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:3301102G>A	uc002fvj.1	-	1	603	c.603C>T	c.(601-603)ATC>ATT	p.I201I		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCCCTCCCATGATAAATATCA	0.458													32	6					0	0	0.005524	0	0
GGT6	124975	broad.mit.edu	37	17	4461464	4461464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:4461464G>A	uc002fyd.3	-	4	1388	c.1328C>T	c.(1327-1329)CCT>CTT	p.P443L	MYBBP1A_uc002fxz.3_5'Flank|MYBBP1A_uc002fyb.3_5'Flank|GGT6_uc010vsb.1_Missense_Mutation_p.P295L|GGT6_uc002fyc.3_Missense_Mutation_p.P411L|GGT6_uc010vsc.1_Missense_Mutation_p.P449L	NM_001122890	NP_001116362	Q6P531	GGT6_HUMAN	gamma-glutamyltransferase 6 isoform a	443	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			skin(1)	1						GGCCTGGGTAGGGGGCCTTGC	0.622													25	9					0	0	0.001512	0	0
ALOX15	246	broad.mit.edu	37	17	4541961	4541961	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:4541961G>A	uc002fyh.2	-	5	575	c.561C>T	c.(559-561)ATC>ATT	p.I187I	ALOX15_uc010vsd.1_Silent_p.I148I|ALOX15_uc010vse.1_Silent_p.I209I	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	187	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	GAGAGTCTTTGATAGCGAGGT	0.547													46	8					0	0	0.003610	0	0
SPAG7	9552	broad.mit.edu	37	17	4862935	4862935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:4862935G>A	uc002gae.2	-	7	611	c.578C>T	c.(577-579)CCC>CTC	p.P193L	SPAG7_uc002gad.2_Missense_Mutation_p.P142L|SPAG7_uc002gaf.2_3'UTR	NM_004890	NP_004881	O75391	SPAG7_HUMAN	sperm associated antigen 7	193						nucleus	nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)	2						ATTGGCCACGGGCACTAGGGG	0.612													44	8					0	0	0.002222	0	0
CAMTA2	23125	broad.mit.edu	37	17	4875709	4875709	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:4875709T>C	uc002gah.1	-	16	2734	c.2626A>G	c.(2626-2628)ATG>GTG	p.M876V	CAMTA2_uc010cku.1_Missense_Mutation_p.M899V|CAMTA2_uc002gag.1_Missense_Mutation_p.M875V|CAMTA2_uc002gai.1_Missense_Mutation_p.M878V|CAMTA2_uc010ckv.1_Missense_Mutation_p.M523V	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	876					cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						ATGTCCTCCATAGTCATCTCA	0.612													24	5					0	0	0.003954	0	0
KIF1C	10749	broad.mit.edu	37	17	4926946	4926946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:4926946C>T	uc002gan.1	+	23	3138	c.2812C>T	c.(2812-2814)CGT>TGT	p.R938C		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	938					microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						CCGTCGTGGTCGTCTTCGCTG	0.716													28	2					0	0	0.001512	0	0
NLRP1	22861	broad.mit.edu	37	17	5424903	5424903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:5424903G>A	uc002gci.2	-	13	4279	c.3724C>T	c.(3724-3726)CAT>TAT	p.H1242Y	NLRP1_uc002gcg.1_Missense_Mutation_p.H1246Y|NLRP1_uc002gck.2_Missense_Mutation_p.H1242Y|NLRP1_uc002gcj.2_Missense_Mutation_p.H1212Y|NLRP1_uc002gcl.2_Missense_Mutation_p.H1212Y|NLRP1_uc002gch.3_Missense_Mutation_p.H1242Y	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1242					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TCCTCAGGATGGACGCGGTGG	0.552													38	10					0	0	0.004878	0	0
NLRP1	22861	broad.mit.edu	37	17	5461949	5461949	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:5461949G>A	uc002gci.2	-	4	2622	c.2067C>T	c.(2065-2067)ATC>ATT	p.I689I	NLRP1_uc002gcg.1_Silent_p.I689I|NLRP1_uc002gck.2_Silent_p.I689I|NLRP1_uc002gcj.2_Silent_p.I689I|NLRP1_uc002gcl.2_Silent_p.I689I|NLRP1_uc002gch.3_Silent_p.I689I|NLRP1_uc010clh.2_Silent_p.I689I	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	689					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GGCAGTGAAAGATGTTCTCCA	0.557													53	11					0	0	0.003610	0	0
WSCD1	23302	broad.mit.edu	37	17	6023659	6023659	+	Missense_Mutation	SNP	C	T	T	rs148765035		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:6023659C>T	uc010cli.2	+	9	1785	c.1406C>T	c.(1405-1407)TCG>TTG	p.S469L	WSCD1_uc002gcn.2_Missense_Mutation_p.S469L|WSCD1_uc002gco.2_Missense_Mutation_p.S469L|WSCD1_uc010clj.2_Missense_Mutation_p.S160L	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	469						integral to membrane	sulfotransferase activity				0						AGCTACGCCTCGTGGTGGTCC	0.672													94	22					0	0	0.003610	0	0
TEKT1	83659	broad.mit.edu	37	17	6704101	6704101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:6704101C>T	uc002gdt.2	-	7	1124	c.1014G>A	c.(1012-1014)ATG>ATA	p.M338I	TEKT1_uc010vth.1_Missense_Mutation_p.M192I	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	338	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				GAACCTCCTTCATTAGCCTAT	0.478											OREG0024124	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	107	25					0	0	0.003610	0	0
BCL6B	255877	broad.mit.edu	37	17	6930093	6930093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:6930093G>A	uc002geg.2	+	7	1181	c.1124G>A	c.(1123-1125)AGC>AAC	p.S375N	BCL6B_uc010clt.1_Missense_Mutation_p.S376N	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	375	C2H2-type 2.					nucleus	zinc ion binding			skin(1)	1						AAAACGCACAGCCGCATCCAT	0.567													49	9					0	0	0.003610	0	0
YBX2	51087	broad.mit.edu	37	17	7193773	7193773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:7193773G>A	uc002gfq.2	-	5	598	c.541C>T	c.(541-543)CGC>TGC	p.R181C		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	181					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						ATGAATCGGCGGGACTTACGT	0.647													28	6					0	0	0.001512	0	0
NEURL4	84461	broad.mit.edu	37	17	7227207	7227207	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:7227207G>A	uc002gga.1	-	12	2194	c.2187C>T	c.(2185-2187)ATC>ATT	p.I729I	NEURL4_uc002ggb.1_Silent_p.I729I|NEURL4_uc002ggc.1_Silent_p.I75I	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	729	NHR 4.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCCCGTTAGTGATGACTGCGT	0.612											OREG0024134	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	14					0	0	0.003610	0	0
ZBTB4	57659	broad.mit.edu	37	17	7366631	7366631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:7366631G>A	uc002ghc.3	-	4	1920	c.1670C>T	c.(1669-1671)GCC>GTC	p.A557V	ZBTB4_uc002ghd.3_Missense_Mutation_p.A557V	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	557					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		CCGGCCCTTGGCCTCCTCCGT	0.701													7	2					0	0	0.001984	0	0
POLR2A	5430	broad.mit.edu	37	17	7405399	7405399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:7405399C>T	uc002ghf.3	+	15	2764	c.2530C>T	c.(2530-2532)CGT>TGT	p.R844C		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	844	Bridging helix.				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CATGGGGGGTCGTGAGGGGCT	0.587													13	2					0	0	0.001855	0	0
POLR2A	5430	broad.mit.edu	37	17	7416841	7416841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:7416841C>T	uc002ghf.3	+	29	5492	c.5258C>T	c.(5257-5259)CCC>CTC	p.P1753L		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1753	23.|52 X 7 AA approximate tandem repeats of Y-[ST]-P-[STQ]-[ST]-P-[SRTEVKGN].				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CCAACCAGTCCCAATTACACC	0.313													102	22					0	0	0.003610	0	0
TP53	7157	broad.mit.edu	37	17	7576857	7576857	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:7576857A>C	uc002gim.2	-	9	1183	c.989T>G	c.(988-990)CTT>CGT	p.L330R	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.L330R|TP53_uc010cne.1_RNA|TP53_uc010cnf.1_Missense_Mutation_p.L198R|TP53_uc010cng.1_Missense_Mutation_p.L198R|TP53_uc002gii.1_Missense_Mutation_p.L198R|TP53_uc010cnh.1_Missense_Mutation_p.L330R|TP53_uc010cni.1_Missense_Mutation_p.L330R|TP53_uc002gij.2_Missense_Mutation_p.L330R	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	330	Oligomerization.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.|Interaction with HIPK2.		L -> H (in sporadic cancers; somatic mutation).|L -> R (in sporadic cancers; somatic mutation).|L -> P (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.L330H(3)|p.?(1)|p.L330P(1)|p.L330R(1)|p.L330fs*15(1)|p.Q331fs*14(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TAGTACCTGAAGGGTGAAATA	0.453		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			34	15					0	0	0.003755	0	0
DNAH2	146754	broad.mit.edu	37	17	7689617	7689617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:7689617C>T	uc002giu.1	+	39	6319	c.6305C>T	c.(6304-6306)TCC>TTC	p.S2102F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2102	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GCCTCCCTGTCCTCTCTGTGC	0.562													33	9					0	0	0.003271	0	0
DNAH2	146754	broad.mit.edu	37	17	7689896	7689896	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:7689896T>C	uc002giu.1	+	40	6371	c.6357T>C	c.(6355-6357)CCT>CCC	p.P2119P		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2119	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGGAGTTCCCTTTGAACCCCA	0.498													23	5					0	0	0.003954	0	0
USP43	124739	broad.mit.edu	37	17	9631820	9631820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:9631820G>A	uc010cod.2	+	15	2885	c.2885G>A	c.(2884-2886)GGA>GAA	p.G962E	USP43_uc002gma.3_Missense_Mutation_p.G651E|USP43_uc010vva.1_Missense_Mutation_p.G957E|USP43_uc010coe.2_Missense_Mutation_p.G759E|USP43_uc002gmc.3_Missense_Mutation_p.G474E	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	962					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TTCCAGATGGGAAGCAAAAGC	0.567													11	2					0	0	0.000673	0	0
GLP2R	9340	broad.mit.edu	37	17	9760827	9760827	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:9760827C>T	uc002gmd.1	+	6	699	c.699C>T	c.(697-699)GTC>GTT	p.V233V		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	233	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	TGAAGGACGTCGTCTTCTACA	0.502													25	7					0	0	0.001061	0	0
MYH13	8735	broad.mit.edu	37	17	10258066	10258066	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10258066G>A	uc002gmk.1	-	11	1026	c.936C>T	c.(934-936)TTC>TTT	p.F312F		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	312	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCACGAAGGGGAAGTCGAAGG	0.458													50	20					0	0	0.003610	0	0
MYH8	4626	broad.mit.edu	37	17	10314225	10314225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10314225C>T	uc002gmm.2	-	15	1551	c.1456G>A	c.(1456-1458)GAG>AAG	p.E486K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	486	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGCAGTTTCTCGTTGGTGAAG	0.403									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				81	16					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10356594	10356594	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10356594G>A	uc002gmn.2	-	24	3097	c.2986C>T	c.(2986-2988)CTG>TTG	p.L996L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	996	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCCTTGGTCAGCTTAGCAATG	0.473													128	32					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10357094	10357094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10357094C>T	uc002gmn.2	-	23	2911	c.2800G>A	c.(2800-2802)GAA>AAA	p.E934K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	934	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGATCTCTTCCTCATCCTCA	0.443													223	52					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10364263	10364263	+	Missense_Mutation	SNP	C	T	T	rs148182083		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10364263C>T	uc002gmn.2	-	12	1228	c.1117G>A	c.(1117-1119)GAA>AAA	p.E373K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	373	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCCTGCTCTTCCCTTTGCTTT	0.498													62	9					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10401200	10401200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10401200C>T	uc002gmo.2	-	31	4310	c.4216G>A	c.(4216-4218)GAA>AAA	p.E1406K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1406	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCTACATGTTCCTCAGCATCC	0.458													51	13					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10404024	10404024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10404024C>T	uc002gmo.2	-	28	3878	c.3784G>A	c.(3784-3786)GAA>AAA	p.E1262K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1262	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GTCTTAATTTCACTCAGTTGA	0.483													56	9					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10408756	10408756	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10408756G>A	uc002gmo.2	-	20	2341	c.2247C>T	c.(2245-2247)CTC>CTT	p.L749L	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	749	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGGACCCCAGGAGCTTCTCTG	0.403													54	14					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10419944	10419944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10419944C>T	uc002gmo.2	-	3	110	c.16G>A	c.(16-18)GAG>AAG	p.E6K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	6	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATGGCCATCTCAGAGTCGGAA	0.478													41	8					0	0	0.001951	0	0
MYH2	4620	broad.mit.edu	37	17	10428095	10428095	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10428095C>T	uc010coi.2	-	34	5078	c.4950G>A	c.(4948-4950)AGG>AGA	p.R1650R	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.R1650R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1650	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTTGGGTGTTCCTGTAGTTCC	0.502													63	13					0	0	0.003610	0	0
MYH2	4620	broad.mit.edu	37	17	10440695	10440695	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10440695G>A	uc010coi.2	-	16	1880	c.1752C>T	c.(1750-1752)CAC>CAT	p.H584H	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.H584H|MYH2_uc010coj.2_Silent_p.H584H	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	584	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CACCAGCATAGTGAATCAGAG	0.527													87	17					0	0	0.003610	0	0
MYH3	4621	broad.mit.edu	37	17	10546172	10546172	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:10546172G>A	uc002gmq.1	-	14	1629	c.1552C>T	c.(1552-1554)CTG>TTG	p.L518L		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	518	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CAGGCAGCCAGGTCCATCCCG	0.498													49	12					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11535903	11535903	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:11535903G>A	uc002gne.2	+	8	1587	c.1519_splice	c.e8-1	p.D507_splice		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2						cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGTCTCTTCAGGACTTTGAAA	0.383													35	13					0	0	0.001485	0	0
DNAH9	1770	broad.mit.edu	37	17	11671837	11671837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:11671837C>T	uc002gne.2	+	37	7306	c.7238C>T	c.(7237-7239)TCC>TTC	p.S2413F	DNAH9_uc010coo.2_Missense_Mutation_p.S1707F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2413					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AAGTTTCCTTCCCAAGGAACC	0.502													44	6					0	0	0.001951	0	0
MYOCD	93649	broad.mit.edu	37	17	12649381	12649381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:12649381G>A	uc002gnn.2	+	9	1416	c.1117G>A	c.(1117-1119)GAT>AAT	p.D373N	MYOCD_uc002gno.2_Missense_Mutation_p.D373N|MYOCD_uc002gnp.1_Missense_Mutation_p.D277N|MYOCD_uc002gnq.2_Missense_Mutation_p.D92N	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	373	SAP.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TAACCTGGATGATCTGAAGGT	0.413													50	10					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	17	16725386	16725386	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:16725386C>T	uc002gqq.1	-	1		c.508G>A								full-length cDNA clone CS0DI013YN06 of Placenta Cot 25-normalized of Homo sapiens (human).																		ACCTCCAGGTCAGCGTTGGCC	0.552													28	6					0	0	0.002445	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16843016	16843016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:16843016C>T	uc002gqs.1	-	5	740	c.727G>A	c.(727-729)GAG>AAG	p.E243K	TNFRSF13B_uc010vwt.1_RNA|TNFRSF13B_uc002gqt.1_Missense_Mutation_p.E197K	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	243	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						ACTGCGCTCTCCTGCGTGGGC	0.662									IgA_Deficiency_Selective				25	3					0	0	0.003330	0	0
PEMT	10400	broad.mit.edu	37	17	17480299	17480299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:17480299G>A	uc002grj.2	-	2	95	c.28C>T	c.(28-30)CCC>TCC	p.P10S	PEMT_uc002grk.2_Missense_Mutation_p.P10S|PEMT_uc002grl.2_Missense_Mutation_p.P47S|PEMT_uc010vwx.1_Missense_Mutation_p.P47S	NM_148173	NP_680478	Q9UBM1	PEMT_HUMAN	phosphatidylethanolamine N-methyltransferase	10					cell proliferation|phosphatidylcholine biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial membrane	phosphatidylethanolamine N-methyltransferase activity				0				Colorectal(2;0.0157)|READ - Rectum adenocarcinoma(2;0.0891)		GGATCCAGGGGGTCCACGTAG	0.597													33	5					0	0	0.001287	0	0
RAI1	10743	broad.mit.edu	37	17	17697975	17697975	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:17697975C>A	uc002grm.2	+	3	2182	c.1713C>A	c.(1711-1713)TCC>TCA	p.S571S	RAI1_uc002grn.1_Silent_p.S571S	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	571						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		CTGACGACTCCTTCCAGAGCC	0.632													72	14					3.71121e-27	6.46126e-27	0.003610	1	0
RAI1	10743	broad.mit.edu	37	17	17701219	17701219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:17701219C>T	uc002grm.2	+	3	5426	c.4957C>T	c.(4957-4959)CCT>TCT	p.P1653S	RAI1_uc002grn.1_Missense_Mutation_p.P1653S	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1653						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GGCCACACTCCCTGGAGGCTC	0.522													29	3					0	0	0.001512	0	0
MYO15A	51168	broad.mit.edu	37	17	18042907	18042907	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:18042907C>T	uc010vxh.1	+	18	5531	c.5193C>T	c.(5191-5193)TTC>TTT	p.F1731F		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1731	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TGGACCTGTTCGTACGGAGCC	0.637													15	5					0	0	0.004007	0	0
LGALS9B	284194	broad.mit.edu	37	17	20358623	20358623	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:20358623C>G	uc002gxa.1	-	5	598	c.533G>C	c.(532-534)AGA>ACA	p.R178T	LGALS9B_uc002gwz.1_Missense_Mutation_p.R178T|LGALS9B_uc010vzh.1_Missense_Mutation_p.R90T	NM_001042685	NP_001036150	Q3B8N2	LEG9B_HUMAN	galectin-9 like	178							sugar binding			skin(1)	1						CACTTTTTGTCTGCGCCCCCT	0.622													8	1					0	0	0.002450	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904187	21904187	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:21904187C>T	uc002gza.2	+	1		c.126C>T				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						gcatcccagcctcaggcctgc	0													4	26					0	0	0.001984	0	0
SEZ6	124925	broad.mit.edu	37	17	27308743	27308743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:27308743G>A	uc002hdp.2	-	2	564	c.370C>T	c.(370-372)CCA>TCA	p.P124S	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.P124S|SEZ6_uc002hdq.1_5'UTR|SEZ6_uc010crz.1_Missense_Mutation_p.P124S	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	124	Pro-rich.|Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			GCCATGGCTGGAGTGGGGCTG	0.647													29	9					0	0	0.001271	0	0
CRYBA1	1411	broad.mit.edu	37	17	27581346	27581346	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:27581346G>A	uc002hdw.2	+	6	634	c.627G>A	c.(625-627)TCG>TCA	p.S209S		NM_005208	NP_005199	P05813	CRBA1_HUMAN	crystallin, beta A3	209	Beta/gamma crystallin 'Greek key' 4.				visual perception	soluble fraction	structural constituent of eye lens				0			BRCA - Breast invasive adenocarcinoma(11;3.3e-05)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			AGATCCAATCGATTCGCCGAA	0.438													105	22					0	0	0.003610	0	0
CCDC55	84081	broad.mit.edu	37	17	28512481	28512481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:28512481C>T	uc002heu.2	+	7	1494	c.1466C>T	c.(1465-1467)CCC>CTC	p.P489L	CCDC55_uc002hev.2_Missense_Mutation_p.P435L|CCDC55_uc010wbl.1_Missense_Mutation_p.P435L|CCDC55_uc010wbm.1_Missense_Mutation_p.P435L|CCDC55_uc002hex.2_Missense_Mutation_p.P435L	NM_032141	NP_115517	Q9H0G5	NSRP1_HUMAN	coiled-coil domain containing 55 isoform 1	489					developmental process|nucleocytoplasmic transport|regulation of alternative nuclear mRNA splicing, via spliceosome	nuclear speck|ribonucleoprotein complex	mRNA binding|protein binding				0						CAAGAGAAACCCTCTAATTCT	0.433													54	10					0	0	0.003610	0	0
ADAP2	55803	broad.mit.edu	37	17	29283361	29283361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:29283361G>A	uc002hfx.2	+	10	1264	c.985G>A	c.(985-987)GGA>AGA	p.G329R	ADAP2_uc010csk.2_Missense_Mutation_p.G335R|ADAP2_uc002hfy.2_Missense_Mutation_p.G328R|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	329	PH 2.				heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						CTGGAAAGCCGGACTCACCAT	0.562													30	10					0	0	0.001271	0	0
SPACA3	124912	broad.mit.edu	37	17	31323939	31323939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:31323939G>A	uc002hhs.1	+	3	497	c.422G>A	c.(421-423)GGG>GAG	p.G141E	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	141	Extracellular (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			ACCAACAACGGGATCTTCCAG	0.592													40	13					0	0	0.002222	0	0
UNC45B	146862	broad.mit.edu	37	17	33503053	33503053	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:33503053G>A	uc002hja.2	+	15	2128	c.2031G>A	c.(2029-2031)AAG>AAA	p.K677K	UNC45B_uc002hjb.2_Silent_p.K675K|UNC45B_uc002hjc.2_Silent_p.K675K|UNC45B_uc010cto.2_Silent_p.K596K	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	677					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				GTGGTGGCAAGGTAACTGGGC	0.527													35	9					0	0	0.001951	0	0
UNC45B	146862	broad.mit.edu	37	17	33513464	33513465	+	Silent	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:33513464_33513465CC>TT	uc002hja.2	+	20	2779_2780	c.2682_2683CC>TT	c.(2680-2685)ATCCTG>ATTTTG	p.894_895IL>IL	UNC45B_uc002hjb.2_Silent_p.892_893IL>IL|UNC45B_uc002hjc.2_Silent_p.892_893IL>IL|UNC45B_uc010cto.2_Silent_p.813_814IL>IL	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	894_895					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TGCTGGAGATCCTGACTGTGGT	0.535													12	20					0	0	0.004672	0	0
SLFN11	91607	broad.mit.edu	37	17	33679994	33679994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:33679994C>T	uc010ctp.2	-	7	2529	c.2087G>A	c.(2086-2088)GGA>GAA	p.G696E	SLFN11_uc010ctq.2_Missense_Mutation_p.G696E|SLFN11_uc002hjh.3_Missense_Mutation_p.G696E|SLFN11_uc002hjg.3_Missense_Mutation_p.G696E|SLFN11_uc010ctr.2_Missense_Mutation_p.G696E	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	696						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCAGAGAATTCCTGGGCCACC	0.498													88	12					0	0	0.003610	0	0
SLFN11	91607	broad.mit.edu	37	17	33690076	33690076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:33690076C>T	uc010ctp.2	-	4	1193	c.751G>A	c.(751-753)GAT>AAT	p.D251N	SLFN11_uc010ctq.2_Missense_Mutation_p.D251N|SLFN11_uc002hjh.3_Missense_Mutation_p.D251N|SLFN11_uc002hjg.3_Missense_Mutation_p.D251N|SLFN11_uc010ctr.2_Missense_Mutation_p.D251N	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	251						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTCTTATCATCCACTCCAATA	0.393													79	15					0	0	0.003610	0	0
GGNBP2	79893	broad.mit.edu	37	17	34935735	34935735	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:34935735G>T	uc002hnb.2	+	8	1155	c.906G>T	c.(904-906)TTG>TTT	p.L302F	GGNBP2_uc002hna.2_Missense_Mutation_p.L302F|GGNBP2_uc002hnc.1_Missense_Mutation_p.L131F	NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	302					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		TGACCTGCTTGGGAATTCATC	0.408													8	126					0.000274275	0.000471926	0.004482	1	0
AATF	26574	broad.mit.edu	37	17	35345953	35345953	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:35345953C>T	uc002hni.2	+	6	1334	c.1083C>T	c.(1081-1083)GTC>GTT	p.V361V	AATF_uc002hnj.2_RNA	NM_012138	NP_036270	Q9NY61	AATF_HUMAN	apoptosis antagonizing transcription factor	361	RB1 binding.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of superoxide anion generation|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to DNA damage stimulus	centrosome|focal adhesion|nucleolus	leucine zipper domain binding|sequence-specific DNA binding transcription factor activity				0		Breast(25;0.00607)				ACTTTACAGTCTACAGGAACC	0.498													30	5					0	0	0.001786	0	0
TBC1D3	729873	broad.mit.edu	37	17	36375118	36375118	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:36375118G>A	uc010wdn.1	-	1		c.60C>T			uc002hpx.2_RNA			Q8IZP1	TBC3A_HUMAN	Homo sapiens TBC1D3 mRNA for TBC1 domain family, member 3, complete cds.							intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGAGTACTAGGGAAAGACAAG	0.348													16	38					0	0	0.001882	0	0
GPR179	440435	broad.mit.edu	37	17	36486741	36486741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:36486741G>A	uc002hpz.2	-	11	2732	c.2711C>T	c.(2710-2712)TCC>TTC	p.S904F		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	904	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTTGGCAGGGGAAGGTGGAGC	0.657													17	0					0	0	0.004007	0	0
GPR179	440435	broad.mit.edu	37	17	36486905	36486905	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:36486905C>T	uc002hpz.2	-	11	2568	c.2547G>A	c.(2545-2547)AAG>AAA	p.K849K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	849	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TGAGCAAGGCCTTTTCCCTGG	0.662													22	3					0	0	0.003954	0	0
SRCIN1	80725	broad.mit.edu	37	17	36704930	36704930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:36704930C>T	uc002hqd.2	-	17	3358	c.3133G>A	c.(3133-3135)GAG>AAG	p.E1045K	SRCIN1_uc002hqf.1_Missense_Mutation_p.E917K|SRCIN1_uc002hqe.2_Missense_Mutation_p.E899K	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	917					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						ACCTCCAGCTCCTCGGACTCA	0.667													10	1					0	0	0.000673	0	0
Unknown	0	broad.mit.edu	37	17	37199453	37199453	+	RNA	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:37199453A>T	uc002hrd.1	+	3		c.2606A>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		TTTTGGTAGGAATCTTGGTTG	0.353													79	20					0	0	0.003610	0	0
ERBB2	2064	broad.mit.edu	37	17	37879848	37879848	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:37879848C>T	uc002hso.2	+	18	2381	c.2143C>T	c.(2143-2145)CTG>TTG	p.L715L	ERBB2_uc002hsm.2_Silent_p.L685L|ERBB2_uc010cwa.2_Silent_p.L700L|ERBB2_uc002hsp.2_Silent_p.L518L|ERBB2_uc010cwb.2_Silent_p.L715L|ERBB2_uc010wek.1_Silent_p.L439L	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	715	Cytoplasmic (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	GATGCGGATCCTGAAAGAGAC	0.662		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			14	3					0	0	0.003163	0	0
ZPBP2	124626	broad.mit.edu	37	17	38028531	38028531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:38028531G>A	uc002hte.2	+	5	568	c.415G>A	c.(415-417)GAA>AAA	p.E139K	ZPBP2_uc002htf.2_Missense_Mutation_p.E117K	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2	139					binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			AGCCTATCGGGAACCTGATTA	0.328													66	17					0	0	0.003610	0	0
GSDMA	284110	broad.mit.edu	37	17	38133080	38133080	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:38133080G>A	uc002htl.1	+	12	1225	c.1107G>A	c.(1105-1107)ACG>ACA	p.T369T	GSDMA_uc002htm.1_Silent_p.T369T	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	369					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						TGGAGAGCACGATGGAACAGA	0.512													54	16					0	0	0.003610	0	0
PSMD3	5709	broad.mit.edu	37	17	38142926	38142926	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:38142926C>T	uc002htn.1	+	3	674	c.510C>T	c.(508-510)CTC>CTT	p.L170L	PSMD3_uc010wen.1_RNA|PSMD3_uc010weo.1_Silent_p.L71L	NM_002809	NP_002800	O43242	PSMD3_HUMAN	proteasome 26S non-ATPase subunit 3	170					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	enzyme regulator activity|protein binding			ovary(1)|pancreas(1)	2	Colorectal(19;0.000442)					TCCAACTCCTCGTGGTCATCT	0.552													79	20					0	0	0.003610	0	0
TNS4	84951	broad.mit.edu	37	17	38641186	38641186	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:38641186G>A	uc010cxb.2	-	5	1526	c.1362C>T	c.(1360-1362)ATC>ATT	p.I454I		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	454	SH2.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			GCTCTCGGGTGATGTTTGGCT	0.537													33	9					0	0	0.001287	0	0
TNS4	84951	broad.mit.edu	37	17	38645133	38645133	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:38645133G>A	uc010cxb.2	-	3	692	c.528C>T	c.(526-528)TTC>TTT	p.F176F		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	176	Ser-rich.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			GAAGGGAGCCGAAGGGCGGGG	0.622													74	18					0	0	0.003610	0	0
KRT25	147183	broad.mit.edu	37	17	38911513	38911513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:38911513C>T	uc002hve.2	-	1	72	c.11G>A	c.(10-12)CGA>CAA	p.R4Q		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	4	Head.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				ACTGGAAAGTCGAAGAGACAT	0.488													22	5					0	0	0.003330	0	0
KRT20	54474	broad.mit.edu	37	17	39036418	39036418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:39036418C>T	uc002hvl.2	-	4	768	c.726G>A	c.(724-726)ATG>ATA	p.M242I		NM_019010	NP_061883	P35900	K1C20_HUMAN	keratin 20	242	Rod.|Coil 2.				apoptosis|intermediate filament organization	Golgi apparatus|intermediate filament	protein binding|structural constituent of cytoskeleton			large_intestine(1)|kidney(1)|skin(1)	3		Breast(137;0.000301)|Ovarian(249;0.15)				ACTTCTGCCTCATTTCATTCA	0.483													68	22					0	0	0.003610	0	0
KRT39	390792	broad.mit.edu	37	17	39122948	39122948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:39122948G>A	uc002hvo.1	-	1	197	c.161C>T	c.(160-162)CCC>CTC	p.P54L	KRT39_uc010wfm.1_5'UTR	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	54	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				CTGGTCCCAGGGAATTCTGAG	0.507													149	26					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	17	39564933	39564933	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:39564933C>T	uc002hwo.1	+	2		c.354C>T								Homo sapiens cDNA FLJ41849 fis, clone NT2RI3003409.																		TCAGGGACTCCAGCTGGGCCT	0.582													4	0					0	0	0.000248	0	0
KRT38	8687	broad.mit.edu	37	17	39596766	39596766	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:39596766G>A	uc002hwq.1	-	1	831	c.408C>T	c.(406-408)CTC>CTT	p.L136L		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	136	Coil 1A.|Rod.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				TCCTCTCGAGGAGTGTGGCCT	0.592													49	10					0	0	0.003610	0	0
KRT9	3857	broad.mit.edu	37	17	39727617	39727617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:39727617C>T	uc002hxe.3	-	1	694	c.628G>A	c.(628-630)GAT>AAT	p.D210N	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	210	Rod.|Coil 1B.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				TCCTTGAGATCATCAATAGTG	0.418													85	34					0	0	0.003610	0	0
HAP1	9001	broad.mit.edu	37	17	39883651	39883651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:39883651C>T	uc002hxm.1	-	9	1342	c.1330G>A	c.(1330-1332)GGG>AGG	p.G444R	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Intron|HAP1_uc002hxo.1_Intron|HAP1_uc002hxp.1_Intron	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	444	Glu-rich.|HAP1 N-terminal.				brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			AGCATGCCCCCACAATCCATG	0.617													39	7					0	0	0.001287	0	0
TUBG2	27175	broad.mit.edu	37	17	40811958	40811958	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:40811958C>T	uc010wgr.1	+	2	412	c.156C>T	c.(154-156)TTC>TTT	p.F52F	TUBG2_uc002iaq.2_5'UTR|TUBG2_uc002iar.2_5'UTR|TUBG2_uc002ias.2_5'UTR|TUBG2_uc002iap.2_5'UTR	NM_016437	NP_057521	Q9NRH3	TBG2_HUMAN	tubulin, gamma 2	52					G2/M transition of mitotic cell cycle|microtubule-based process|protein polymerization	cytosol	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.141)		ACGTCTTTTTCTACCAGGTGC	0.657													53	3					0	0	0.003610	0	0
AOC2	314	broad.mit.edu	37	17	41002343	41002343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:41002343C>T	uc002ibu.2	+	4	2284	c.2249C>T	c.(2248-2250)CCT>CTT	p.P750L	AOC2_uc002ibt.2_Missense_Mutation_p.P723L|AOC3_uc002ibv.2_5'Flank	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	750					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		GACTTACCCCCTTTCTCTTAC	0.557													85	35					0	0	0.003610	0	0
C17orf53	78995	broad.mit.edu	37	17	42232019	42232019	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:42232019C>T	uc002ifi.1	+	6	1733	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F	C17orf53_uc010czq.1_Silent_p.F515F|C17orf53_uc002ifj.1_Silent_p.F440F|C17orf53_uc002ifk.1_RNA	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	516											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		GTGTGGTTTTCAAGGACCCCA	0.552													51	12					0	0	0.003610	0	0
ITGA2B	3674	broad.mit.edu	37	17	42457071	42457071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:42457071G>A	uc002igt.1	-	18	1896	c.1864C>T	c.(1864-1866)CAT>TAT	p.H622Y	ITGA2B_uc002igu.1_Missense_Mutation_p.H103Y	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	622	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	TCCTGCACATGGGTGTCTCCA	0.592													101	22					0	0	0.003610	0	0
ITGA2B	3674	broad.mit.edu	37	17	42458345	42458345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:42458345G>A	uc002igt.1	-	13	1327	c.1295C>T	c.(1294-1296)TCA>TTA	p.S432L	ITGA2B_uc002igu.1_5'UTR	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	432	Extracellular (Potential).|FG-GAP 6.				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	GGAGGGACGTGACCTCAGCCC	0.627													40	4					0	0	0.002522	0	0
DBF4B	80174	broad.mit.edu	37	17	42828063	42828064	+	Silent	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:42828063_42828064CC>TT	uc002ihf.2	+	14	1503_1504	c.1290_1291CC>TT	c.(1288-1293)CTCCTG>CTTTTG	p.430_431LL>LL	DBF4B_uc010wjc.1_Intron	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	430_431					cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				CCACAACCCTCCTGCCGGCCTT	0.619													27	5					0	0	0.004672	0	0
ITGB3	3690	broad.mit.edu	37	17	45367084	45367084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:45367084C>T	uc002ilj.2	+	7	997	c.977C>T	c.(976-978)TCC>TTC	p.S326F	ITGB3_uc002ili.1_Missense_Mutation_p.S326F|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	326	VWFA.|Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	GAGAAGCTATCCCAGAAAAAC	0.448													46	5					0	0	0.003610	0	0
ITGB3	3690	broad.mit.edu	37	17	45367595	45367595	+	Silent	SNP	C	T	T	rs139342659		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:45367595C>T	uc002ilj.2	+	8	1100	c.1080C>T	c.(1078-1080)TCC>TCT	p.S360S	ITGB3_uc002ili.1_Silent_p.S360S|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	360	VWFA.|Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	GGGTTCTGTCCATGGATTCCA	0.493													85	27					0	0	0.003610	0	0
C17orf57	124989	broad.mit.edu	37	17	45456553	45456553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:45456553G>A	uc002iln.2	+	14	1927	c.1516G>A	c.(1516-1518)GGA>AGA	p.G506R	C17orf57_uc002ilm.2_Missense_Mutation_p.G410R|C17orf57_uc010daz.1_Missense_Mutation_p.G458R	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	506	EF-hand 1.						calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						AACAGAGAATGGAATGGTGGA	0.289													33	13					0	0	0.003271	0	0
TBX21	30009	broad.mit.edu	37	17	45822198	45822198	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:45822198C>T	uc002ilv.1	+	6	1285	c.1074C>T	c.(1072-1074)CTC>CTT	p.L358L		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	358					lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						ACTCTCCTCTCCTACCCAACC	0.577													65	14					0	0	0.003610	0	0
TBX21	30009	broad.mit.edu	37	17	45822634	45822635	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:45822634_45822635CC>TT	uc002ilv.1	+	6	1721_1722	c.1510_1511CC>TT	c.(1510-1512)CCC>TTC	p.P504F		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	504					lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						GCGCGTGTCCCCCTATCCTTCC	0.564													38	6					0	0	0.004672	0	0
MRPL10	124995	broad.mit.edu	37	17	45904462	45904462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:45904462G>A	uc002ilz.2	-	3	357	c.331C>T	c.(331-333)CTT>TTT	p.L111F	MRPL10_uc010wky.1_Missense_Mutation_p.L72F|MRPL10_uc002ily.2_Missense_Mutation_p.L121F	NM_145255	NP_660298	Q7Z7H8	RM10_HUMAN	mitochondrial ribosomal protein L10 precursor	111					ribosome biogenesis|translation	mitochondrial large ribosomal subunit	structural constituent of ribosome			ovary(1)	1						TGTCGCATAAGAAGCTTGTCC	0.567													53	8					0	0	0.003610	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47246996	47246996	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:47246996A>G	uc002ion.2	+	11	1666	c.1607A>G	c.(1606-1608)AAG>AGG	p.K536R	B4GALNT2_uc010wlt.1_Missense_Mutation_p.K450R|B4GALNT2_uc010wlu.1_Missense_Mutation_p.K476R	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	536	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			GCCCTAGAGAAGACCTACAAT	0.547													14	168					0	0	0.001855	0	0
MYST2	11143	broad.mit.edu	37	17	47900603	47900603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:47900603C>T	uc002ipm.2	+	12	1552	c.1426C>T	c.(1426-1428)CTT>TTT	p.L476F	MYST2_uc010wma.1_Missense_Mutation_p.L337F|MYST2_uc010wmb.1_Missense_Mutation_p.L366F|MYST2_uc010wmc.1_Missense_Mutation_p.L307F|MYST2_uc010wmd.1_Missense_Mutation_p.L320F|MYST2_uc010wme.1_Missense_Mutation_p.L290F|MYST2_uc010wmf.1_Missense_Mutation_p.L141F|MYST2_uc010wmg.1_Missense_Mutation_p.L31F	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2	476					DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						CTCCTGTATCCTTACTATGCC	0.323													117	11					0	0	0.003610	0	0
DLX3	1747	broad.mit.edu	37	17	48072064	48072065	+	Missense_Mutation	DNP	TC	CA	CA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:48072064_48072065TC>CA	uc002ipy.2	-	1	524_525	c.298_299GA>TG	c.(298-300)GAG>TGG	p.E100W		NM_005220	NP_005211	O60479	DLX3_HUMAN	distal-less homeobox 3	100						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGCGGCTGCTCCCGATACGCC	0.624													46	5					0	0	0.004672	0	0
ITGA3	3675	broad.mit.edu	37	17	48151603	48151603	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:48151603C>T	uc010dbl.2	+	9	1805	c.1341C>T	c.(1339-1341)GAC>GAT	p.D447D	ITGA3_uc010dbm.2_Silent_p.D447D	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	447	Potential.|FG-GAP 7.|Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						TCTACCCAGACCTTCTAGTGG	0.537													33	99					0	0	0.003271	0	0
ITGA3	3675	broad.mit.edu	37	17	48153727	48153727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:48153727C>T	uc010dbl.2	+	13	2176	c.1712C>T	c.(1711-1713)TCC>TTC	p.S571F	ITGA3_uc010dbm.2_Missense_Mutation_p.S571F	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	571	Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						ATCATCATCTCCATGAACTAC	0.637													30	91					0	0	0.001512	0	0
COL1A1	1277	broad.mit.edu	37	17	48272987	48272987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:48272987G>A	uc002iqm.2	-	17	1222	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	366	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ACACCCTGGGGACCTTCAGAG	0.617			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta				OREG0024559	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	55	5					0	0	0.003610	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48599400	48599400	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:48599400G>A	uc010wmr.1	+	10	1506	c.1344G>A	c.(1342-1344)GGG>GGA	p.G448G	MYCBPAP_uc002iqx.2_Silent_p.G448G|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	411					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			TGTTCTGTGGGAAGCCAGCTT	0.532													78	8					0	0	0.003610	0	0
KIF2B	84643	broad.mit.edu	37	17	51900681	51900681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:51900681C>T	uc002iua.2	+	1	443	c.287C>T	c.(286-288)TCC>TTC	p.S96F	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	96					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CCGCCCTTATCCCCCTTGGCT	0.577													104	16					0	0	0.003610	0	0
PPM1E	22843	broad.mit.edu	37	17	57043207	57043207	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:57043207G>T	uc002iwx.2	+	3	863	c.736G>T	c.(736-738)GAC>TAC	p.D246Y	PPM1E_uc010ddd.2_Intron	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	255	PP2C-like.				protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			GAAAATGGAGGACAAACATGT	0.448													54	12					2.23044e-30	3.8856e-30	0.003610	1	0
BCAS3	54828	broad.mit.edu	37	17	59067396	59067396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:59067396C>T	uc002iyv.3	+	15	1395	c.1286C>T	c.(1285-1287)TCC>TTC	p.S429F	BCAS3_uc010wow.1_Missense_Mutation_p.S216F|BCAS3_uc002iyu.3_Missense_Mutation_p.S429F|BCAS3_uc002iyw.3_Missense_Mutation_p.S425F|BCAS3_uc002iyx.1_Missense_Mutation_p.S244F|BCAS3_uc002iyy.3_Missense_Mutation_p.S200F|BCAS3_uc002iyz.3_5'UTR|BCAS3_uc002iza.3_5'UTR	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	429	WD 3.					nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			CGGGGTACTTCCCACGTTTTC	0.478													75	14					0	0	0.003610	0	0
MED13	9969	broad.mit.edu	37	17	60061676	60061676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:60061676G>A	uc002izo.2	-	15	2821	c.2744C>T	c.(2743-2745)TCC>TTC	p.S915F		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	915					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TGCAAACATGGAACATCCCAC	0.373													31	5					0	0	0.001786	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60345056	60345056	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:60345056C>T	uc010woz.1	-	11		c.887G>A			uc010wpb.1_5'Flank	NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						GCCTCCTTACCCCATCAATCA	0.602													56	4					0	0	0.003610	0	0
MARCH10	162333	broad.mit.edu	37	17	60814521	60814521	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:60814521G>A	uc010ddr.2	-	6	946	c.708C>T	c.(706-708)TCC>TCT	p.S236S	MARCH10_uc002jag.3_Silent_p.S236S|MARCH10_uc010dds.2_Silent_p.S274S|MARCH10_uc002jah.2_Silent_p.S235S|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	236							ligase activity|zinc ion binding				0						GGAAGGCCTGGGACAGGGCTG	0.537													82	20					0	0	0.003610	0	0
ACE	1636	broad.mit.edu	37	17	61566318	61566318	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:61566318G>A	uc002jau.1	+	17	2488	c.2466G>A	c.(2464-2466)GGG>GGA	p.G822G	ACE_uc002jav.1_Silent_p.G248G|ACE_uc010ddv.1_Silent_p.G49G|ACE_uc010wpj.1_Silent_p.G248G|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Intron	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	822	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TAGATGCAGGGGACTCGTGGA	0.572													35	6					0	0	0.004878	0	0
KCNH6	81033	broad.mit.edu	37	17	61613282	61613282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:61613282G>A	uc002jay.2	+	6	1434	c.1354G>A	c.(1354-1356)GAC>AAC	p.D452N	KCNH6_uc002jax.1_Missense_Mutation_p.D452N|KCNH6_uc010wpl.1_Missense_Mutation_p.D329N|KCNH6_uc010wpm.1_Missense_Mutation_p.D452N|KCNH6_uc002jaz.1_Intron	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	452	Extracellular (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	CAACGGCAGCGACCCAGCCTC	0.622													19	5					0	0	0.001216	0	0
ICAM2	3384	broad.mit.edu	37	17	62081042	62081042	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:62081042A>T	uc002jdu.3	-	3	843	c.611T>A	c.(610-612)TTT>TAT	p.F204Y	C17orf72_uc002jdt.3_3'UTR|C17orf72_uc010wpu.1_3'UTR|C17orf72_uc010wpv.1_3'UTR|C17orf72_uc010wpw.1_3'UTR|ICAM2_uc002jdw.3_Missense_Mutation_p.F204Y|ICAM2_uc010ded.2_Missense_Mutation_p.F204Y|ICAM2_uc002jdx.3_Missense_Mutation_p.F204Y|ICAM2_uc002jdv.3_Missense_Mutation_p.F204Y	NM_000873	NP_000864	P13598	ICAM2_HUMAN	intercellular adhesion molecule 2 precursor	204	Extracellular (Potential).				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			ovary(1)	1						GTGTTTGTGAAAGATGTTGCC	0.567													29	7					0	0	0.002096	0	0
RGS9	8787	broad.mit.edu	37	17	63221186	63221186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:63221186C>T	uc002jfe.2	+	18	1584	c.1474C>T	c.(1474-1476)CCT>TCT	p.P492S	RGS9_uc010dem.2_Missense_Mutation_p.P489S|RGS9_uc002jfd.2_Missense_Mutation_p.P489S|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Missense_Mutation_p.P263S	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	492					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						GCCCCCGTCTCCTTCTAGCCC	0.652													67	10					0	0	0.003610	0	0
CACNG5	27091	broad.mit.edu	37	17	64875095	64875095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:64875095G>A	uc010wqi.1	+	3	439	c.202G>A	c.(202-204)GAG>AAG	p.E68K	CACNG5_uc002jfr.2_Missense_Mutation_p.E68K|CACNG5_uc010wqj.1_Missense_Mutation_p.E68K	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	68					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			CACAGGTGAGGAGCGGGGGCG	0.468													47	11					0	0	0.003610	0	0
PRKAR1A	5573	broad.mit.edu	37	17	66522027	66522027	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:66522027C>T	uc002jhg.2	+	7	862	c.682C>T	c.(682-684)CGA>TGA	p.R228*	PRKAR1A_uc002jhh.2_Nonsense_Mutation_p.R228*|PRKAR1A_uc002jhi.2_Nonsense_Mutation_p.R228*|PRKAR1A_uc002jhj.2_Nonsense_Mutation_p.R228*|PRKAR1A_uc002jhk.2_Nonsense_Mutation_p.R104*|PRKAR1A_uc002jhl.2_Nonsense_Mutation_p.R228*|PRKAR1A_uc002jhm.2_Nonsense_Mutation_p.R228*	NM_212471	NP_997636	P10644	KAP0_HUMAN	cAMP-dependent protein kinase, regulatory	228	cAMP 1.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity|protein binding			adrenal_gland(4)|lung(3)|thyroid(2)|soft_tissue(2)|breast(1)	12	Breast(10;1.64e-13)					GGGCATCGACCGAGACAGCTA	0.418			T|Mis|N|F|S	RET	papillary thyroid	myxoma|endocrine|papillary thyroid			Carney_Complex|Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial|Cardiac_Myxomas_Familial_Clustering_of				36	6					0	0	0.002836	0	0
ABCA8	10351	broad.mit.edu	37	17	66878783	66878783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:66878783C>T	uc002jhp.2	-	28	3844	c.3665G>A	c.(3664-3666)AGA>AAA	p.R1222K	ABCA8_uc002jhq.2_Missense_Mutation_p.R1262K|ABCA8_uc010wqq.1_Missense_Mutation_p.R1257K	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1222						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TGTTCTCACTCTTTCCATCTG	0.348													59	8					0	0	0.003610	0	0
ABCA9	10350	broad.mit.edu	37	17	67017883	67017883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:67017883C>T	uc002jhu.2	-	18	2544	c.2401G>A	c.(2401-2403)GAT>AAT	p.D801N	ABCA9_uc010dez.2_Missense_Mutation_p.D801N	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	801					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					tttttcttACCTGATTCATCA	0.204													65	11					0	0	0.003610	0	0
ABCA6	23460	broad.mit.edu	37	17	67129814	67129814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:67129814C>T	uc002jhw.1	-	6	934	c.759G>A	c.(757-759)ATG>ATA	p.M253I		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	253					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CCATCATTTTCATCAAATTCT	0.303													24	10					0	0	0.004656	0	0
ABCA6	23460	broad.mit.edu	37	17	67132256	67132256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:67132256G>A	uc002jhw.1	-	4	612	c.437C>T	c.(436-438)CCA>CTA	p.P146L	ABCA6_uc002jhy.2_Missense_Mutation_p.P144L	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	146					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					TTTCCAAAGTGGACTGTTATA	0.323													22	4					0	0	0.005443	0	0
ABCA10	10349	broad.mit.edu	37	17	67210953	67210953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:67210953G>A	uc010dfa.1	-	10	1777	c.898C>T	c.(898-900)CCT>TCT	p.P300S	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_5'UTR|ABCA10_uc010dfc.1_Missense_Mutation_p.P192S	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	300					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					GAGGGATCAGGAAAAATAACA	0.264													86	20					0	0	0.003610	0	0
SDK2	54549	broad.mit.edu	37	17	71410810	71410810	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:71410810G>A	uc010dfm.2	-	18	2457	c.2457C>T	c.(2455-2457)TTC>TTT	p.F819F	SDK2_uc010dfn.2_Silent_p.F498F	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	819	Fibronectin type-III 3.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TGCCGTTGATGAACTGGGGGC	0.602													35	5					0	0	0.002222	0	0
SDK2	54549	broad.mit.edu	37	17	71420077	71420077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:71420077G>A	uc010dfm.2	-	13	1738	c.1738C>T	c.(1738-1740)CGC>TGC	p.R580C	SDK2_uc010dfn.2_Missense_Mutation_p.R259C	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	580	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion	integral to membrane				ovary(2)	2						TGGGCACTGCGAGAGTCGTTG	0.647													3	1					0	0	0.004672	0	0
DNAI2	64446	broad.mit.edu	37	17	72278044	72278044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:72278044G>A	uc002jkf.2	+	2	187	c.88G>A	c.(88-90)GAC>AAC	p.D30N	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	30					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						GCTGAACATCGACATCATGCC	0.602									Kartagener_syndrome				66	11					0	0	0.003610	0	0
GPRC5C	55890	broad.mit.edu	37	17	72436741	72436741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:72436741G>A	uc002jks.2	+	1	865	c.826G>A	c.(826-828)GAT>AAT	p.D276N	GPRC5C_uc002jkp.2_Missense_Mutation_p.D321N|GPRC5C_uc002jkq.2_Intron|GPRC5C_uc002jkr.2_Missense_Mutation_p.D288N|GPRC5C_uc002jkt.2_Missense_Mutation_p.D276N|GPRC5C_uc002jku.2_5'Flank	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	276	Extracellular (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						TCCCACCTGGGATGACCCCAC	0.602													30	7					0	0	0.003755	0	0
OTOP2	92736	broad.mit.edu	37	17	72927037	72927037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:72927037G>A	uc010wrp.1	+	7	1396	c.1307G>A	c.(1306-1308)AGT>AAT	p.S436N		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	436						integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					GAGCCTCACAGTACCCACCCC	0.622													27	11					0	0	0.003954	0	0
OTOP3	347741	broad.mit.edu	37	17	72945453	72945453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:72945453G>A	uc010wrr.1	+	7	1733	c.1733G>A	c.(1732-1734)GGG>GAG	p.G578E	OTOP3_uc010wrq.1_Missense_Mutation_p.G560E	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	578	Helical; (Potential).					integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					CTGCCTCTGGGGGTCTTCTAC	0.602													26	5					0	0	0.001061	0	0
GRB2	2885	broad.mit.edu	37	17	73317851	73317851	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:73317851G>A	uc002jnx.3	-	5	714	c.357C>T	c.(355-357)TTC>TTT	p.F119F	GRB2_uc002jny.3_Silent_p.F78F	NM_002086	NP_002077	P62993	GRB2_HUMAN	growth factor receptor-bound protein 2 isoform	119	SH2.				axon guidance|blood coagulation|cell junction assembly|cell-cell signaling|cellular response to ionizing radiation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|receptor internalization|signal transduction in response to DNA damage|T cell costimulation	cytosol|Golgi apparatus	epidermal growth factor receptor binding|insulin receptor substrate binding|SH3/SH2 adaptor activity			ovary(3)	3	all_cancers(13;5.44e-09)|all_epithelial(9;1.1e-09)|Breast(9;1.85e-09)|all_lung(278;0.222)		all cancers(21;1.09e-07)|Epithelial(20;1.23e-06)|Lung(188;0.185)		Pegademase bovine(DB00061)	CCACCCAGAGGAAGTACTTCC	0.493													20	5					0	0	0.001523	0	0
TRIM47	91107	broad.mit.edu	37	17	73872106	73872106	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:73872106G>A	uc002jpw.2	-	4	1104	c.1077C>T	c.(1075-1077)TTC>TTT	p.F359F	TRIM47_uc002jpv.2_Silent_p.F121F	NM_033452	NP_258411	Q96LD4	TRI47_HUMAN	tripartite motif-containing 47	359						cytoplasm|nucleus	zinc ion binding			ovary(2)|prostate(1)|lung(1)|breast(1)	5			Epithelial(20;4.23e-06)|all cancers(21;5.24e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			ATGATTTGGTGAAGCTGAGCT	0.632													42	12					0	0	0.003610	0	0
EVPL	2125	broad.mit.edu	37	17	74003456	74003456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:74003456G>A	uc002jqi.2	-	22	6058	c.5830C>T	c.(5830-5832)CTC>TTC	p.L1944F	EVPL_uc010wss.1_Missense_Mutation_p.L1966F|EVPL_uc010wst.1_Missense_Mutation_p.L1414F	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1944	Plectin 6.|Globular 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGGTCGATGAGCCCCCCGGTC	0.672													20	5					0	0	0.002299	0	0
EVPL	2125	broad.mit.edu	37	17	74006213	74006214	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:74006213_74006214CC>TT	uc002jqi.2	-	22	3300_3301	c.3072_3073GG>AA	c.(3070-3075)AGGGAC>AGAAAC	p.D1025N	EVPL_uc010wss.1_Missense_Mutation_p.D1047N|EVPL_uc010wst.1_Missense_Mutation_p.D495N	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1025	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGGCCGGGGTCCCTCTCCACCT	0.644													48	14					0	0	0.004672	0	0
ZACN	353174	broad.mit.edu	37	17	74075563	74075563	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:74075563G>A	uc002jqn.2	+	2	224	c.141G>A	c.(139-141)CAG>CAA	p.Q47Q	ZACN_uc002jqo.2_RNA|ZACN_uc010dgu.2_RNA	NM_180990	NP_851321	Q401N2	ZACN_HUMAN	zinc activated ligand-gated ion channel	47	Extracellular (Potential).				response to zinc ion	integral to membrane|membrane fraction|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity				0						AGAAGGTTCAGGAAAGCATCC	0.527													23	3					0	0	0.002780	0	0
AANAT	15	broad.mit.edu	37	17	74465773	74465773	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:74465773G>A	uc002jro.2	+	4	579	c.345G>A	c.(343-345)GGG>GGA	p.G115G	AANAT_uc010wte.1_RNA	NM_001088	NP_001079	Q16613	SNAT_HUMAN	arylalkylamine N-acetyltransferase	115	N-acetyltransferase.				circadian rhythm|melatonin biosynthetic process	cytosol	aralkylamine N-acetyltransferase activity				0						ACAGGTCTGGGGGCCACATAG	0.672													7	0					0	0	0.003080	0	0
TNRC6C	57690	broad.mit.edu	37	17	76087609	76087609	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:76087609C>A	uc002jud.2	+	15	4491	c.3891C>A	c.(3889-3891)CTC>CTA	p.L1297L	TNRC6C_uc002juf.2_Silent_p.L1294L	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1297					gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			AGTCACGCCTCCCCCAGTGGA	0.577													18	2					6.94344e-10	1.20077e-09	0.000743	1	0
SOCS3	9021	broad.mit.edu	37	17	76354956	76354956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:76354956G>A	uc002jvl.2	-	2	637	c.221C>T	c.(220-222)TCG>TTG	p.S74L		NM_003955	NP_003946	O14543	SOCS3_HUMAN	suppressor of cytokine signaling 3	74	SH2.				anti-apoptosis|interferon-gamma-mediated signaling pathway|JAK-STAT cascade|regulation of growth|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol	protein kinase inhibitor activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(99;0.000688)|OV - Ovarian serous cystadenocarcinoma(97;0.0554)			GCGCTGGTCCGAGCTGTCGCG	0.647													14	4					0	0	0.004007	0	0
DNAH17	8632	broad.mit.edu	37	17	76503584	76503584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:76503584G>A	uc010wtu.1	-	2	592	c.415C>T	c.(415-417)CCG>TCG	p.P139S						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GAGTCCCCCGGGAGCTGGGTG	0.597													26	4					0	0	0.004656	0	0
DNAH17	8632	broad.mit.edu	37	17	76563248	76563248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:76563248C>T	uc002jvv.1	-	6	497	c.391G>A	c.(391-393)GAA>AAA	p.E131K						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TTATAGAGTTCCTAGTGGAGG	0.517													5	2					0	0	0.000602	0	0
ENGASE	64772	broad.mit.edu	37	17	77079621	77079621	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:77079621C>T	uc002jwv.2	+	9	1208	c.1200C>T	c.(1198-1200)TTC>TTT	p.F400F	ENGASE_uc002jww.2_Silent_p.F106F	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	400						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						CCTTGCCTTTCGTCACGTCCT	0.627													25	7					0	0	0.001061	0	0
RPTOR	57521	broad.mit.edu	37	17	78796094	78796094	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:78796094C>T	uc002jyt.1	+	8	1789	c.984C>T	c.(982-984)CTC>CTT	p.L328L	RPTOR_uc002jys.2_Silent_p.L328L|RPTOR_uc010wuf.1_Silent_p.L143L|RPTOR_uc010wug.1_Silent_p.L328L	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	328					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						GGAACGTGCTCCCCCGGGGTG	0.642													84	14					0	0	0.003610	0	0
C17orf56	146705	broad.mit.edu	37	17	79210864	79210864	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:79210864G>A	uc002jzu.1	-	3	151	c.129C>T	c.(127-129)TCC>TCT	p.S43S	C17orf56_uc002jzs.1_5'UTR|C17orf56_uc002jzt.1_5'UTR|C17orf56_uc002jzv.1_5'UTR|C17orf89_uc010dib.1_5'Flank|C17orf89_uc002jzx.2_5'Flank	NM_144679	NP_653280	Q96N21	CQ056_HUMAN	hypothetical protein LOC146705	43						integral to membrane					0	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			GAGACTCGTGGGAGATTTCTG	0.677													5	0					0	0	0.001984	0	0
LRRC45	201255	broad.mit.edu	37	17	79982614	79982614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr17:79982614C>T	uc002kde.2	+	3	568	c.328C>T	c.(328-330)CTC>TTC	p.L110F	STRA13_uc002kdc.2_5'Flank|STRA13_uc002kdd.2_5'Flank	NM_144999	NP_659436	Q96CN5	LRC45_HUMAN	leucine rich repeat containing 45	110						centrosome				pancreas(1)	1	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			GGGAAAACTCCTCCAACAGAA	0.607													22	4					0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	18	117127	117127	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:117127C>T	uc002kke.2	+	3		c.553C>T								Homo sapiens Rho-associated, coiled-coil containing protein kinase 1, mRNA (cDNA clone IMAGE:5269982), complete cds.																		TTTCCAAAATCACAAAGGCCA	0.413													13	15					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	18	118392	118392	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:118392C>T	uc002kke.2	+	4		c.826C>T								Homo sapiens Rho-associated, coiled-coil containing protein kinase 1, mRNA (cDNA clone IMAGE:5269982), complete cds.																		AAAGAAAATCCCTAAGAATCC	0.383													48	125					0	0	0.003610	0	0
COLEC12	81035	broad.mit.edu	37	18	333031	333031	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:333031A>T	uc002kkm.2	-	7	2144	c.1929T>A	c.(1927-1929)GTT>GTA	p.V643V		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	643	Extracellular (Potential).|C-type lectin.				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				TGTTTATGAAAACAAGATGTG	0.368													50	50					0	0	0.003610	0	0
YES1	7525	broad.mit.edu	37	18	743027	743027	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:743027G>A	uc002kky.2	-	8	1172	c.951C>T	c.(949-951)TTC>TTT	p.F317F	YES1_uc002kkz.2_Silent_p.F317F	NM_005433	NP_005424	P07947	YES_HUMAN	viral oncogene yes-1 homolog 1	317	Protein kinase.				blood coagulation|leukocyte migration|regulation of vascular permeability|T cell costimulation	cytosol|plasma membrane	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|ovary(1)	3					Dasatinib(DB01254)	CTTCTTGAAGGAAAGCTTCTG	0.323													53	54					0	0	0.003610	0	0
MYOM1	8736	broad.mit.edu	37	18	3134759	3134759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:3134759G>A	uc002klp.2	-	16	2607	c.2273C>T	c.(2272-2274)TCG>TTG	p.S758L	MYOM1_uc002klq.2_Missense_Mutation_p.S758L	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	758	Fibronectin type-III 3.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CTCCTCCCACGAAACTACCAC	0.517													17	54					0	0	0.001216	0	0
MYOM1	8736	broad.mit.edu	37	18	3134818	3134818	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:3134818G>A	uc002klp.2	-	16	2548	c.2214C>T	c.(2212-2214)ATC>ATT	p.I738I	MYOM1_uc002klq.2_Silent_p.I738I	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	738						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GAGCCTTGGGGATATCTGAGA	0.433													13	42					0	0	0.003163	0	0
DLGAP1	9229	broad.mit.edu	37	18	3534363	3534363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:3534363C>T	uc002kmf.2	-	7	2375	c.2308G>A	c.(2308-2310)GAC>AAC	p.D770N	DLGAP1_uc010wyz.1_Missense_Mutation_p.D770N|DLGAP1_uc002kme.1_Missense_Mutation_p.D468N|DLGAP1_uc010dkn.2_Missense_Mutation_p.D478N|DLGAP1_uc010wyw.1_Missense_Mutation_p.D476N|DLGAP1_uc010wyx.1_Missense_Mutation_p.D492N|DLGAP1_uc010wyy.1_Missense_Mutation_p.D454N|DLGAP1_uc002kmg.2_Missense_Mutation_p.D468N	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	770					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				ATCCAGGGGTCCGGAGGAGGC	0.562													10	18					0	0	0.000673	0	0
TMEM200C	645369	broad.mit.edu	37	18	5891962	5891962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:5891962C>T	uc002kmx.1	-	1	142	c.101G>A	c.(100-102)AGG>AAG	p.R34K		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	34						integral to membrane					0						GTTCTTGCGCCTCTTCTTGGC	0.602													11	29					0	0	0.000978	0	0
L3MBTL4	91133	broad.mit.edu	37	18	5956288	5956288	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:5956288G>A	uc002kmz.3	-	20	1963	c.1803C>T	c.(1801-1803)ATC>ATT	p.I601I	L3MBTL4_uc010dkt.2_Silent_p.I601I|L3MBTL4_uc002kmy.3_Silent_p.I430I	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	601	SAM.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				TGAACATCAGGATAGAGTTGT	0.498													99	76					0	0	0.003610	0	0
LAMA1	284217	broad.mit.edu	37	18	7011389	7011389	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:7011389G>A	uc002knm.2	-	25	3691	c.3597C>T	c.(3595-3597)CCC>CCT	p.P1199P	LAMA1_uc010wzj.1_Silent_p.P675P	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1199	Laminin IV type A 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCAGGAAGTCGGGGGCCTGGT	0.612													9	15					0	0	0.004482	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887373	9887373	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:9887373C>T	uc002koi.3	+	2	1346	c.897C>T	c.(895-897)CTC>CTT	p.L299L	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Silent_p.L232L	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	299	13.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						AGGGTGACCTCCCCAAGTCCC	0.602													17	44					0	0	0.000743	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887524	9887524	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:9887524G>T	uc002koi.3	+	2	1497	c.1048G>T	c.(1048-1050)GAA>TAA	p.E350*	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Nonsense_Mutation_p.E283*	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	350	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.|16.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GTCCCCAGAAGAAACCATCCA	0.567													32	13					2.80507e-11	4.85688e-11	0.002445	1	0
CIDEA	1149	broad.mit.edu	37	18	12254390	12254390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:12254390C>T	uc002kqt.3	+	1	73	c.8C>T	c.(7-9)GCC>GTC	p.A3V	CIDEA_uc002kqu.3_5'Flank|CIDEA_uc010dlc.2_5'Flank	NM_001279	NP_001270	O60543	CIDEA_HUMAN	cell death-inducing DFFA-like effector a isoform	3					DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change|lipid metabolic process|lipid storage|negative regulation of apoptosis|negative regulation of cytokine secretion|negative regulation of lipid catabolic process|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of sequestering of triglyceride|temperature homeostasis	mitochondrial envelope|nucleus	protein homodimerization activity			ovary(1)|central_nervous_system(1)	2						GCCATGGAGGCCGCCCGGGAC	0.587													8	3					0	0	0.000673	0	0
MC5R	4161	broad.mit.edu	37	18	13826711	13826711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:13826711G>A	uc010xaf.1	+	1	947	c.947G>A	c.(946-948)AGG>AAG	p.R316K		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	316	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						CGTGGTTTCAGGATCGCCTGC	0.493													35	75					0	0	0.004878	0	0
MC2R	4158	broad.mit.edu	37	18	13885422	13885422	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:13885422G>A	uc002ksp.1	-	2	273	c.96C>T	c.(94-96)TTC>TTT	p.F32F		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	32	Helical; Name=1; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	TGGAAATTGTGAAAAATATCT	0.408													23	22					0	0	0.001882	0	0
CXADRP3	440224	broad.mit.edu	37	18	14479219	14479219	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:14479219G>A	uc010xai.1	-	3		c.345C>T				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						AACTTCTGGTGAAATCCGCGA	0.567													4	11					0	0	0.000248	0	0
POTEC	388468	broad.mit.edu	37	18	14542690	14542690	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:14542690G>A	uc010dln.2	-	1	910	c.456C>T	c.(454-456)GTC>GTT	p.V152V	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	152	ANK 1.									skin(3)	3						CCTTTCTGGGGACCTTACCCC	0.582													39	87					0	0	0.002522	0	0
POTEC	388468	broad.mit.edu	37	18	14542981	14542981	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:14542981C>T	uc010dln.2	-	1	619	c.165G>A	c.(163-165)AAG>AAA	p.K55K	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	55										skin(3)	3						TCCTGAGCATCTTCATAAAGG	0.587													58	56					0	0	0.003610	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14764014	14764014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:14764014G>A	uc010dlo.2	+	7	1330	c.1150G>A	c.(1150-1152)GAA>AAA	p.E384K	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	384										ovary(1)|skin(1)	2						TAATAAAACTGAAGTTTTGGA	0.368													9	2					0	0	0.004482	0	0
RBBP8	5932	broad.mit.edu	37	18	20570913	20570914	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:20570913_20570914CC>TT	uc002ktw.2	+	10	1152_1153	c.821_822CC>TT	c.(820-822)CCC>CTT	p.P274L	RBBP8_uc002kty.2_Missense_Mutation_p.P274L|RBBP8_uc002ktz.2_Missense_Mutation_p.P274L|RBBP8_uc002kua.2_Missense_Mutation_p.P274L|RBBP8_uc002ktx.1_Missense_Mutation_p.P274L	NM_002894	NP_002885	Q99708	COM1_HUMAN	retinoblastoma binding protein 8 isoform a	274					cell cycle checkpoint|DNA double-strand break processing involved in repair via single-strand annealing|meiosis|regulation of transcription from RNA polymerase II promoter	nucleus	damaged DNA binding|protein binding|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)|lung(1)|skin(1)	3	all_cancers(21;4.34e-05)|all_epithelial(16;8.3e-07)|Lung NSC(20;0.0107)|Colorectal(14;0.0202)|all_lung(20;0.0291)|Ovarian(20;0.19)		OV - Ovarian serous cystadenocarcinoma(1;0.00196)			ACTCAAGGTCCCATGAGCCCCC	0.267								Direct_reversal_of_damage|Homologous_recombination					6	9					0	0	0.004672	0	0
LAMA3	3909	broad.mit.edu	37	18	21390430	21390430	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:21390430G>A	uc002kuq.2	+	13	1790	c.1704G>A	c.(1702-1704)AGG>AGA	p.R568R	LAMA3_uc002kur.2_Silent_p.R568R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	568	Domain V.|Laminin EGF-like 5.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTGTGACAGGTGTCTCTCAG	0.562													19	31					0	0	0.002299	0	0
LAMA3	3909	broad.mit.edu	37	18	21390462	21390462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:21390462G>A	uc002kuq.2	+	13	1822	c.1736G>A	c.(1735-1737)TGC>TAC	p.C579Y	LAMA3_uc002kur.2_Missense_Mutation_p.C579Y	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	579	Domain V.|Laminin EGF-like 5.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCCCCCACTGCCAAGGTAGG	0.557													15	28					0	0	0.004990	0	0
LAMA3	3909	broad.mit.edu	37	18	21399891	21399891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:21399891G>A	uc002kuq.2	+	19	2320	c.2234G>A	c.(2233-2235)CGA>CAA	p.R745Q	LAMA3_uc002kur.2_Missense_Mutation_p.R745Q	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	745					cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGAGACCTTCGATTTGGATTT	0.443													26	34					0	0	0.005443	0	0
KCTD1	284252	broad.mit.edu	37	18	24039767	24039767	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:24039767G>A	uc002kvw.2	-	4	992	c.432C>T	c.(430-432)GTC>GTT	p.V144V	KCTD1_uc010xbj.1_Silent_p.V752V|KCTD1_uc010xbk.1_Silent_p.V144V|KCTD1_uc002kvy.2_Silent_p.V62V	NM_001136205	NP_001129677	Q719H9	KCTD1_HUMAN	potassium channel tetramerisation domain	144					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|voltage-gated potassium channel complex	transcription corepressor activity|transcription factor binding|voltage-gated potassium channel activity			ovary(1)	1	all_cancers(21;0.00191)|Lung NSC(5;0.000698)|all_lung(6;0.0019)|Ovarian(20;0.0848)		Epithelial(2;7.8e-06)|OV - Ovarian serous cystadenocarcinoma(3;9.02e-06)|all cancers(3;3.37e-05)			CCACACGCACGACGAGGCACT	0.493													38	59					0	0	0.004878	0	0
CDH2	1000	broad.mit.edu	37	18	25568577	25568577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:25568577C>T	uc002kwg.2	-	11	2111	c.1652G>A	c.(1651-1653)GGA>GAA	p.G551E	CDH2_uc010xbn.1_Missense_Mutation_p.G520E	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	551	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						AGTTATTTGTCCATTCACAGG	0.308													20	28					0	0	0.001216	0	0
CDH2	1000	broad.mit.edu	37	18	25570082	25570082	+	Missense_Mutation	SNP	C	T	T	rs150313483		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:25570082C>T	uc002kwg.2	-	10	2036	c.1577G>A	c.(1576-1578)CGA>CAA	p.R526Q	CDH2_uc010xbn.1_Missense_Mutation_p.R495Q	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	526	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						CTGCATATATCGATCTGGGTC	0.378													27	42					0	0	0.005443	0	0
DSC2	1824	broad.mit.edu	37	18	28649050	28649050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:28649050C>T	uc002kwl.3	-	15	2772	c.2318G>A	c.(2317-2319)GGA>GAA	p.G773E	DSC2_uc002kwk.3_Missense_Mutation_p.G773E	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	773	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GATTCCTGATCCCACGGTGCC	0.517													21	37					0	0	0.001882	0	0
DSC1	1823	broad.mit.edu	37	18	28725645	28725645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:28725645G>A	uc002kwn.2	-	7	1130	c.868C>T	c.(868-870)CAT>TAT	p.H290Y	DSC1_uc002kwm.2_Missense_Mutation_p.H290Y	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	290	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TGCTTTGGATGATCTGGGATT	0.408													37	49					0	0	0.004878	0	0
DSG1	1828	broad.mit.edu	37	18	28923418	28923419	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:28923418_28923419CC>TT	uc002kwp.2	+	12	1905_1906	c.1693_1694CC>TT	c.(1693-1695)CCA>TTA	p.P565L	DSG1_uc010xbp.1_5'Flank	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	565	Helical; (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			ACCAGTGGTCCCATTTTTGATG	0.416													46	102					0	0	0.004672	0	0
DSG1	1828	broad.mit.edu	37	18	28934291	28934291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:28934291G>A	uc002kwp.2	+	15	2344	c.2132G>A	c.(2131-2133)GGA>GAA	p.G711E	DSG1_uc010xbp.1_Missense_Mutation_p.G70E	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	711	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GAAGATGAAGGACGCCCATCT	0.388													30	53					0	0	0.003271	0	0
DSG3	1830	broad.mit.edu	37	18	29044075	29044075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:29044075C>T	uc002kws.2	+	9	1110	c.1001C>T	c.(1000-1002)GCT>GTT	p.A334V		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	334	Cadherin 3.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TTTCTCCAGGCTCTAGATTAT	0.378													9	21					0	0	0.000673	0	0
DSG3	1830	broad.mit.edu	37	18	29052340	29052340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:29052340G>A	uc002kws.2	+	13	2100	c.1991G>A	c.(1990-1992)GGA>GAA	p.G664E	DSG3_uc002kwt.2_5'Flank	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	664	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGCTCAGAAGGAACAATTCAT	0.458													20	34					0	0	0.001523	0	0
DSG3	1830	broad.mit.edu	37	18	29054340	29054340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:29054340G>A	uc002kws.2	+	15	2467	c.2358G>A	c.(2356-2358)ATG>ATA	p.M786I	DSG3_uc002kwt.2_Missense_Mutation_p.M68I	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	786	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CGATAAGCATGAATTTTCTGG	0.398													33	50					0	0	0.004878	0	0
B4GALT6	9331	broad.mit.edu	37	18	29237967	29237967	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:29237967G>A	uc002kwz.3	-	3	615	c.318C>T	c.(316-318)CTC>CTT	p.L106L	B4GALT6_uc010dma.2_Silent_p.L67L|B4GALT6_uc010dmb.2_Silent_p.L106L	NM_004775	NP_004766	Q9UBX8	B4GT6_HUMAN	beta-1,4-galactosyltransferase 6	106	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding				0			OV - Ovarian serous cystadenocarcinoma(10;0.00791)			CTGGACAGGGGAGGTATGGTG	0.373													31	56					0	0	0.005524	0	0
KIAA1012	22878	broad.mit.edu	37	18	29493372	29493372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:29493372G>A	uc002kxc.3	-	5	1095	c.731C>T	c.(730-732)CCT>CTT	p.P244L	KIAA1012_uc002kxb.3_Missense_Mutation_p.P190L|KIAA1012_uc002kxd.3_RNA|KIAA1012_uc002kxe.2_Missense_Mutation_p.P244L	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	244					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						CTGACTCCAAGGATCTGGTAT	0.318													33	57					0	0	0.002836	0	0
WBP11P1	441818	broad.mit.edu	37	18	30091976	30091976	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:30091976G>A	uc010dmc.2	+	1		c.351G>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						CAGATGATCCGAGACATGGAG	0.408													9	14					0	0	0.000443	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093726	30093726	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:30093726C>T	uc010dmc.2	+	1		c.2101C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						ATGAGGATTTCATGAAAGAGA	0.453													9	10					0	0	0.004482	0	0
ASXL3	80816	broad.mit.edu	37	18	31263382	31263382	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:31263382G>A	uc010dmg.1	+	8	784	c.729G>A	c.(727-729)TGG>TGA	p.W243*	ASXL3_uc002kxq.2_5'UTR	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	243					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ACTTGAAATGGACCAAAGCTG	0.413													7	15					0	0	0.003080	0	0
ASXL3	80816	broad.mit.edu	37	18	31318971	31318971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:31318971G>A	uc010dmg.1	+	11	1658	c.1603G>A	c.(1603-1605)GAT>AAT	p.D535N	ASXL3_uc002kxq.2_Missense_Mutation_p.D242N	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	535					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AGTTGTTATCGATCAGTTAGA	0.393													8	10					0	0	0.003080	0	0
ASXL3	80816	broad.mit.edu	37	18	31319022	31319022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:31319022C>T	uc010dmg.1	+	11	1709	c.1654C>T	c.(1654-1656)CAT>TAT	p.H552Y	ASXL3_uc002kxq.2_Missense_Mutation_p.H259Y	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	552					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATCTATGACTCATGTCAGTGA	0.423													5	14					0	0	0.000602	0	0
ASXL3	80816	broad.mit.edu	37	18	31323386	31323386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:31323386C>T	uc010dmg.1	+	12	3629	c.3574C>T	c.(3574-3576)CCA>TCA	p.P1192S	ASXL3_uc002kxq.2_Missense_Mutation_p.P899S	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1192					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AAGTAAACTTCCAGAAACTGC	0.413													18	27					0	0	0.004990	0	0
ASXL3	80816	broad.mit.edu	37	18	31323770	31323770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:31323770G>A	uc010dmg.1	+	12	4013	c.3958G>A	c.(3958-3960)GAT>AAT	p.D1320N	ASXL3_uc002kxq.2_Missense_Mutation_p.D1027N	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1320	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CTCCATGGATGATAAGCAGTT	0.453													74	100					0	0	0.003610	0	0
NOL4	8715	broad.mit.edu	37	18	31538379	31538379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:31538379G>A	uc010dmi.2	-	7	1289	c.1060C>T	c.(1060-1062)CCT>TCT	p.P354S	NOL4_uc010xbs.1_Missense_Mutation_p.P69S|NOL4_uc002kxr.3_Missense_Mutation_p.P190S|NOL4_uc010xbt.1_Missense_Mutation_p.P280S|NOL4_uc010dmh.2_Missense_Mutation_p.P280S|NOL4_uc010xbu.1_Missense_Mutation_p.P354S|NOL4_uc002kxt.3_Missense_Mutation_p.P354S|NOL4_uc010xbv.1_Missense_Mutation_p.P103S|NOL4_uc010xbw.1_Missense_Mutation_p.P240S	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	354						nucleolus	RNA binding			ovary(3)	3						CTATGTGCAGGAGACTGAAAA	0.383													33	43					0	0	0.002096	0	0
DTNA	1837	broad.mit.edu	37	18	32391971	32391971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:32391971G>A	uc010dmn.1	+	5	498	c.497G>A	c.(496-498)CGA>CAA	p.R166Q	DTNA_uc002kxu.2_Missense_Mutation_p.R166Q|DTNA_uc010xbx.1_Missense_Mutation_p.R166Q|DTNA_uc002kxv.3_Missense_Mutation_p.R166Q|DTNA_uc002kxw.2_Missense_Mutation_p.R166Q|DTNA_uc002kxx.2_Missense_Mutation_p.R166Q|DTNA_uc010dmj.2_Missense_Mutation_p.R166Q|DTNA_uc002kxz.2_Missense_Mutation_p.R166Q|DTNA_uc002kxy.2_Missense_Mutation_p.R166Q|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Missense_Mutation_p.R166Q|DTNA_uc002kyb.3_Missense_Mutation_p.R166Q|DTNA_uc010dmm.2_Missense_Mutation_p.R166Q	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	166	Interaction with MAGEE1 (By similarity).				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						GTTTATGGACGATATGACCAA	0.413													20	36					0	0	0.001216	0	0
SYT4	6860	broad.mit.edu	37	18	40850610	40850610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:40850610G>A	uc002law.2	-	4	1343	c.974C>T	c.(973-975)CCC>CTC	p.P325L	SYT4_uc010dng.2_RNA|SYT4_uc010xcm.1_Missense_Mutation_p.P307L|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	325	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						TTTGACATAGGGATCTGCAGT	0.443													21	25					0	0	0.003330	0	0
SYT4	6860	broad.mit.edu	37	18	40854122	40854122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:40854122G>A	uc002law.2	-	2	641	c.272C>T	c.(271-273)TCA>TTA	p.S91L	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Missense_Mutation_p.S73L|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	91	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						CAGATGCAATGAATTCTTTGG	0.398													24	37					0	0	0.002780	0	0
SLC14A1	6563	broad.mit.edu	37	18	43316525	43316525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:43316525G>A	uc010xcn.1	+	7	894	c.575G>A	c.(574-576)GGA>GAA	p.G192E	SLC14A1_uc010dnk.2_Missense_Mutation_p.G248E|SLC14A1_uc002lbf.3_Missense_Mutation_p.G192E|SLC14A1_uc002lbg.3_Intron|SLC14A1_uc010xco.1_Missense_Mutation_p.G87E|SLC14A1_uc002lbh.3_Missense_Mutation_p.G84E|SLC14A1_uc002lbi.3_Missense_Mutation_p.G60E|SLC14A1_uc002lbj.3_Missense_Mutation_p.G248E|SLC14A1_uc002lbk.3_Missense_Mutation_p.G192E	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	192	Helical; (Potential).					integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						TCAGCCACAGGACATTACAAT	0.468													35	52					0	0	0.002836	0	0
KIAA1632	57724	broad.mit.edu	37	18	43497687	43497687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:43497687G>A	uc002lbm.2	-	17	3296	c.3196C>T	c.(3196-3198)CCT>TCT	p.P1066S	KIAA1632_uc002lbo.1_Missense_Mutation_p.P1066S|KIAA1632_uc010xcq.1_5'Flank|KIAA1632_uc010xcr.1_5'Flank|KIAA1632_uc010xcs.1_5'Flank|KIAA1632_uc002lbn.2_5'UTR	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1066					autophagy						0						TAAAATAAAGGCAGAATCTTA	0.423													41	57					0	0	0.002222	0	0
RNF165	494470	broad.mit.edu	37	18	44015303	44015303	+	Silent	SNP	C	T	T	rs61732298		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:44015303C>T	uc002lcb.1	+	3	480	c.429C>T	c.(427-429)TTC>TTT	p.F143F	RNF165_uc002lby.1_Silent_p.F76F|RNF165_uc010dnn.1_Intron	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	143							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		ATCCCAGCTTCGACTTCGGCC	0.562													15	29					0	0	0.000743	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555104	44555104	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:44555104C>T	uc010xdb.1	-	1	1346	c.1110G>A	c.(1108-1110)TGG>TGA	p.W370*	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	370	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GATCGGGCGTCCACCCTTCCA	0.587													30	551					0	0	0.001485	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555292	44555292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:44555292C>T	uc010xdb.1	-	1	1158	c.922G>A	c.(922-924)GAA>AAA	p.E308K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	308	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						AAAGCAGCTTCCTCCTGGAGC	0.637													25	418					0	0	0.001271	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559889	44559889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:44559889C>T	uc002lcr.1	-	1	2100	c.1747G>A	c.(1747-1749)GAA>AAA	p.E583K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	583	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTCCGTAATTCGTCTGTCTCT	0.517													19	30					0	0	0.001216	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45556063	45556063	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:45556063C>T	uc002lda.2	-	2	1444	c.1428G>A	c.(1426-1428)CGG>CGA	p.R476R	ZBTB7C_uc002ldb.2_Silent_p.R476R|ZBTB7C_uc010dnu.2_Silent_p.R485R|ZBTB7C_uc010dnv.2_Silent_p.R498R|ZBTB7C_uc010dnw.2_Silent_p.R476R	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	476	C2H2-type 4; degenerate.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						CGCGTCGGGGCCGTGCCATGC	0.612													4	4					0	0	0.000248	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567248	45567248	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:45567248G>A	uc002lda.2	-	1	247	c.231C>T	c.(229-231)ATC>ATT	p.I77I	ZBTB7C_uc002ldb.2_Silent_p.I77I|ZBTB7C_uc010dnu.2_Silent_p.I86I|ZBTB7C_uc010dnv.2_Silent_p.I99I|ZBTB7C_uc010dnw.2_Silent_p.I77I|ZBTB7C_uc010dnx.1_Silent_p.I77I|ZBTB7C_uc010dny.1_Silent_p.I77I|ZBTB7C_uc010dnz.1_Silent_p.I99I|ZBTB7C_uc010dob.1_Silent_p.I77I|ZBTB7C_uc010doc.1_Silent_p.I86I|ZBTB7C_uc010dod.1_Silent_p.I99I|ZBTB7C_uc010doe.1_Silent_p.I77I|ZBTB7C_uc010dof.1_Silent_p.I77I|ZBTB7C_uc010dog.1_Silent_p.I77I|ZBTB7C_uc010doh.1_Silent_p.I86I|ZBTB7C_uc010doi.1_Silent_p.I77I|ZBTB7C_uc010doj.1_Silent_p.I86I|ZBTB7C_uc010dok.1_Silent_p.I126I|ZBTB7C_uc010dol.1_Silent_p.I86I|ZBTB7C_uc010doa.1_Silent_p.I99I|ZBTB7C_uc010don.1_Silent_p.I85I|ZBTB7C_uc010doo.1_Silent_p.I77I|ZBTB7C_uc010dop.1_Silent_p.I77I|ZBTB7C_uc010doq.1_Silent_p.I86I|ZBTB7C_uc010dor.1_Silent_p.I99I|ZBTB7C_uc010dos.1_Silent_p.I77I|ZBTB7C_uc010dot.1_Silent_p.I77I|ZBTB7C_uc010dou.1_Silent_p.I86I|ZBTB7C_uc010dom.1_Silent_p.I86I	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	77	BTB.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GGACAAAGTCGATCTCATAGA	0.582													14	22					0	0	0.004007	0	0
KIAA0427	9811	broad.mit.edu	37	18	46385731	46385732	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:46385731_46385732GG>AA	uc002ldc.2	+	12	1883_1884	c.1598_1599GG>AA	c.(1597-1599)CGG>CAA	p.R533Q	KIAA0427_uc002ldd.2_Missense_Mutation_p.R535Q|KIAA0427_uc002lde.3_Missense_Mutation_p.R162Q	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	533	MIF4G.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						AGTACAGGCCGGCTGCTGGAGG	0.634													34	39					0	0	0.004672	0	0
MYO5B	4645	broad.mit.edu	37	18	47390738	47390738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:47390738C>T	uc002leb.2	-	28	3904	c.3616G>A	c.(3616-3618)GAG>AAG	p.E1206K	MYO5B_uc002lea.2_Missense_Mutation_p.E347K	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1206	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TTCTCTGACTCCAGCTCTTGC	0.582													58	76					0	0	0.003610	0	0
MYO5B	4645	broad.mit.edu	37	18	47438483	47438483	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:47438483G>A	uc002leb.2	-	18	2439	c.2151C>T	c.(2149-2151)GCC>GCT	p.A717A		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	717	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGTCTGTGTTGGCGAGCTCTC	0.562													77	82					0	0	0.003610	0	0
MYO5B	4645	broad.mit.edu	37	18	47488716	47488716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:47488716C>T	uc002leb.2	-	12	1753	c.1465G>A	c.(1465-1467)GAT>AAT	p.D489N	MYO5B_uc002lec.1_Missense_Mutation_p.D488N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	489	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCATAAAAATCAATCAGGGTC	0.418													16	30					0	0	0.004990	0	0
MAPK4	5596	broad.mit.edu	37	18	48252394	48252394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:48252394G>A	uc002lev.2	+	5	1916	c.916G>A	c.(916-918)GGG>AGG	p.G306R	MAPK4_uc010xdm.1_Missense_Mutation_p.G95R|MAPK4_uc010doz.2_Intron	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	306	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		AGCTGAGATGGGGCTGCAACA	0.552													25	31					0	0	0.001061	0	0
DCC	1630	broad.mit.edu	37	18	50976943	50976943	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:50976943C>T	uc002lfe.1	+	23	3890	c.3303C>T	c.(3301-3303)ATC>ATT	p.I1101I	DCC_uc010dpf.1_Silent_p.I736I	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1101	Helical; (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGCTTGTGATCATTGTGGTCA	0.527													10	30					0	0	0.000673	0	0
DCC	1630	broad.mit.edu	37	18	50985705	50985705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:50985705G>A	uc002lfe.1	+	24	4083	c.3496G>A	c.(3496-3498)GAA>AAA	p.E1166K	DCC_uc010dpf.1_Missense_Mutation_p.E801K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1166	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GAAAAATATTGAAAAGCCATC	0.537													35	64					0	0	0.002836	0	0
DCC	1630	broad.mit.edu	37	18	51053061	51053061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:51053061C>T	uc002lfe.1	+	28	4773	c.4186C>T	c.(4186-4188)CCT>TCT	p.P1396S	DCC_uc010dpf.1_Missense_Mutation_p.P1029S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1396	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CCCTTTGCTTCCTGTGTCTGT	0.473													18	43					0	0	0.004990	0	0
C18orf54	162681	broad.mit.edu	37	18	51898902	51898902	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:51898902C>A	uc002lfn.3	+	6	1026	c.910C>A	c.(910-912)CTT>ATT	p.L304I	C18orf54_uc002lfo.3_Missense_Mutation_p.L465I	NM_173529	NP_775800	Q8IYD9	CR054_HUMAN	hypothetical protein LOC162681 precursor	304						extracellular region				ovary(1)|skin(1)	2				Colorectal(16;0.0206)|READ - Rectum adenocarcinoma(59;0.186)		GTTATTTAACCTTCAAGCAGT	0.338													42	80					5.44703e-19	9.46209e-19	0.002222	1	0
C18orf26	284254	broad.mit.edu	37	18	52265100	52265100	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:52265100C>T	uc002lfq.1	+	3	403	c.357C>T	c.(355-357)CTC>CTT	p.L119L	C18orf26_uc002lfp.1_Silent_p.L67L	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	119	Helical; (Potential).					integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		TGGCTTGTCTCTTAGCCTGTG	0.373													37	56					0	0	0.002222	0	0
C18orf26	284254	broad.mit.edu	37	18	52265165	52265165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:52265165C>T	uc002lfq.1	+	3	468	c.422C>T	c.(421-423)TCG>TTG	p.S141L	C18orf26_uc002lfp.1_Missense_Mutation_p.S89L	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	141						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		AACAAAGGATCGGCCAATTCC	0.448													16	40					0	0	0.004007	0	0
C18orf26	284254	broad.mit.edu	37	18	52265242	52265242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:52265242C>T	uc002lfq.1	+	3	545	c.499C>T	c.(499-501)CCT>TCT	p.P167S	C18orf26_uc002lfp.1_Missense_Mutation_p.P115S	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	167						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		AACACCCTCTCCTGCTTGTCC	0.473													15	24					0	0	0.003163	0	0
TCF4	6925	broad.mit.edu	37	18	52921913	52921913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:52921913G>A	uc002lfz.2	-	15	1777	c.1165C>T	c.(1165-1167)CGT>TGT	p.R389C	TCF4_uc002lfw.3_Missense_Mutation_p.R229C|TCF4_uc010xdu.1_Missense_Mutation_p.R259C|TCF4_uc010xdv.1_Missense_Mutation_p.R259C|TCF4_uc002lfx.2_Missense_Mutation_p.R318C|TCF4_uc010xdw.1_Missense_Mutation_p.R259C|TCF4_uc002lfy.2_Missense_Mutation_p.R347C|TCF4_uc010xdx.1_Missense_Mutation_p.R365C|TCF4_uc010dph.1_Missense_Mutation_p.R389C|TCF4_uc010xdy.1_Missense_Mutation_p.R365C|TCF4_uc002lga.2_Missense_Mutation_p.R491C|TCF4_uc002lgb.1_Missense_Mutation_p.R229C|TCF4_uc010dpi.2_Missense_Mutation_p.R395C|TCF4_uc002lfv.2_Missense_Mutation_p.R172C	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	389	Leucine-zipper.				positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		CTTTCTAAACGATCTTCAATT	0.403													7	3					0	0	0.004482	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55020219	55020219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:55020219G>A	uc002lgn.2	+	1	499	c.142G>A	c.(142-144)GGG>AGG	p.G48R		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	48	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		CGCCAGCCCGGGGGCGCCCCG	0.582													9	22					0	0	0.001368	0	0
ALPK2	115701	broad.mit.edu	37	18	56202134	56202135	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:56202134_56202135TC>GT	uc002lhj.3	-	5	5498_5499	c.5284_5285GA>AC	c.(5284-5286)GAA>ACA	p.E1762T	ALPK2_uc002lhk.1_Missense_Mutation_p.E1093T	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1762							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TAATGATGTTTCGAGTTTGGGC	0.401													40	51					0	0	0.004672	0	0
CDH20	28316	broad.mit.edu	37	18	59221488	59221488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:59221488G>A	uc010dps.1	+	11	1978	c.1966G>A	c.(1966-1968)GAA>AAA	p.E656K	CDH20_uc002lif.2_Missense_Mutation_p.E650K	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	656	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CGACGACGAGGAAAACATCCA	0.587													29	46					0	0	0.002445	0	0
RNF152	220441	broad.mit.edu	37	18	59483292	59483292	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:59483292G>A	uc002lih.1	-	2	817	c.405C>T	c.(403-405)ATC>ATT	p.I135I		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	135					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				GTTCAGCAGGGATGGTCACCA	0.692													14	21					0	0	0.004990	0	0
PIGN	23556	broad.mit.edu	37	18	59774098	59774098	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:59774098T>A	uc002lii.3	-	20	2139	c.1691A>T	c.(1690-1692)TAC>TTC	p.Y564F	PIGN_uc002lij.3_Missense_Mutation_p.Y564F	NM_176787	NP_789744	O95427	PIGN_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	564	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphotransferase activity, for other substituted phosphate groups			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5		Colorectal(73;0.187)				CATATAGCGGTAGAAAAAACT	0.373													4	14					0	0	0.000602	0	0
SERPINB5	5268	broad.mit.edu	37	18	61156652	61156652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:61156652G>A	uc002liz.3	+	4	521	c.379G>A	c.(379-381)GAA>AAA	p.E127K	SERPINB5_uc002liy.2_Missense_Mutation_p.E127K	NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade	127					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						TAAATTGGAAGAAACGAAAGG	0.388													22	37					0	0	0.003954	0	0
SERPINB4	6318	broad.mit.edu	37	18	61304963	61304963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:61304963G>A	uc002ljf.2	-	8	1249	c.1163C>T	c.(1162-1164)TCA>TTA	p.S388L	SERPINB4_uc002lje.2_Missense_Mutation_p.S367L|SERPINB4_uc002ljg.2_Missense_Mutation_p.S388L	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	388					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CTATGGGGATGAGAATCTGCC	0.403													44	79					0	0	0.003610	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324175	61324175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:61324175G>A	uc002ljg.2	-	6	684	c.658C>T	c.(658-660)CAT>TAT	p.H220Y	SERPINB3_uc002lji.2_Missense_Mutation_p.H220Y|SERPINB3_uc010dqa.2_Intron			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	220					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity	p.N220T(1)		ovary(2)|lung(1)	3						GAGGCAAAATGAAAAGATGTG	0.398													19	30					0	0	0.000743	0	0
SERPINB7	8710	broad.mit.edu	37	18	61449677	61449677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:61449677G>A	uc002ljl.2	+	2	167	c.71G>A	c.(70-72)GGA>GAA	p.G24E	SERPINB7_uc002ljm.2_Missense_Mutation_p.G24E|SERPINB7_uc010xet.1_Missense_Mutation_p.G24E|SERPINB7_uc010dqg.2_Missense_Mutation_p.G24E	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	24					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity	p.G24R(1)		lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				GACAATCAAGGAAATGGAAAT	0.502													20	38					0	0	0.001216	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471555	61471556	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:61471555_61471556CC>TT	uc002ljl.2	+	8	925_926	c.829_830CC>TT	c.(829-831)CCT>TTT	p.P277F	SERPINB7_uc002ljm.2_Missense_Mutation_p.P277F|SERPINB7_uc010xet.1_Missense_Mutation_p.P260F|SERPINB7_uc010dqg.2_Missense_Mutation_p.P277F	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	277					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				GGTATTTTTTCCTCAGTTCAAG	0.351													16	27					0	0	0.004672	0	0
CCDC102B	79839	broad.mit.edu	37	18	66541936	66541936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:66541936G>A	uc002lkk.2	+	7	1190	c.967G>A	c.(967-969)GAA>AAA	p.E323K	CCDC102B_uc002lki.2_Missense_Mutation_p.E323K|CCDC102B_uc002lkj.1_Missense_Mutation_p.E323K	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	323	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				ACATAATGATGAAATGCAAGA	0.363													13	32					0	0	0.001855	0	0
SOCS6	9306	broad.mit.edu	37	18	67992221	67992221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:67992221C>T	uc002lkr.1	+	2	633	c.317C>T	c.(316-318)TCC>TTC	p.S106F	SOCS6_uc010dqq.2_Missense_Mutation_p.S106F	NM_004232	NP_004223	O14544	SOCS6_HUMAN	suppressor of cytokine signaling 6	106	Poly-Ser.				defense response|JAK-STAT cascade|negative regulation of signal transduction|regulation of growth	cytoplasm				large_intestine(1)|lung(1)	2		Esophageal squamous(42;0.129)|Colorectal(73;0.152)				ACCTTCTCCTCCTCCTCAGCA	0.582													27	31					0	0	0.005443	0	0
ZNF516	9658	broad.mit.edu	37	18	74091181	74091181	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:74091181G>A	uc010dqx.1	-	3	3124	c.2889C>T	c.(2887-2889)GCC>GCT	p.A963A	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	963					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		TATTTGTGGGGGCAAAGCCAG	0.662													19	26					0	0	0.003330	0	0
ZNF236	7776	broad.mit.edu	37	18	74639409	74639409	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:74639409C>A	uc002lmi.2	+	24	4542	c.4344C>A	c.(4342-4344)ACC>ACA	p.T1448T	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	1448					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		CCACAGTGACCTCTGCGAACC	0.557													15	16					4.14922e-12	7.18568e-12	0.004007	1	0
GALR1	2587	broad.mit.edu	37	18	74980603	74980603	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:74980603C>T	uc002lms.3	+	3	1292	c.795C>T	c.(793-795)ATC>ATT	p.I265I		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	265	Helical; Name=6; (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		CGCACCACATCATCCATCTCT	0.468													47	70					0	0	0.003610	0	0
NFATC1	4772	broad.mit.edu	37	18	77171144	77171144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:77171144C>T	uc010xfg.1	+	2	1322	c.869C>T	c.(868-870)TCC>TTC	p.S290F	NFATC1_uc002lnc.1_Missense_Mutation_p.S290F|NFATC1_uc010xff.1_Missense_Mutation_p.S290F|NFATC1_uc002lnd.2_Missense_Mutation_p.S290F|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.S290F|NFATC1_uc010xfi.1_Missense_Mutation_p.S277F|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.S277F|NFATC1_uc002lng.2_Missense_Mutation_p.S277F|NFATC1_uc010xfk.1_Missense_Mutation_p.S277F	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	290	3 X SP repeats.|3.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		CCGCACGGCTCCCCGCGGGTC	0.687													13	13					0	0	0.001855	0	0
NFATC1	4772	broad.mit.edu	37	18	77208917	77208917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:77208917G>A	uc010xfg.1	+	4	1975	c.1522G>A	c.(1522-1524)GAG>AAG	p.E508K	NFATC1_uc002lnc.1_Missense_Mutation_p.E508K|NFATC1_uc010xff.1_Missense_Mutation_p.E508K|NFATC1_uc002lnd.2_Missense_Mutation_p.E508K|NFATC1_uc002lne.2_Missense_Mutation_p.E36K|NFATC1_uc010xfh.1_Missense_Mutation_p.E508K|NFATC1_uc010xfi.1_Missense_Mutation_p.E495K|NFATC1_uc010xfj.1_Missense_Mutation_p.E36K|NFATC1_uc002lnf.2_Missense_Mutation_p.E495K|NFATC1_uc002lng.2_Missense_Mutation_p.E495K|NFATC1_uc010xfk.1_Missense_Mutation_p.E495K	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	508	RHD.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		CACCAGCCACGAGGCCATCCT	0.657													14	17					0	0	0.003163	0	0
NFATC1	4772	broad.mit.edu	37	18	77246884	77246884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:77246884C>T	uc010xfg.1	+	9	3182	c.2729C>T	c.(2728-2730)CCT>CTT	p.P910L	NFATC1_uc002lnd.2_Intron|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfj.1_Missense_Mutation_p.P438L|NFATC1_uc002lnf.2_Missense_Mutation_p.P897L|NFATC1_uc002lng.2_Intron|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	910	Trans-activation domain B (TAD-B).				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GCCCCTATTCCTGTAACGGTC	0.637													15	37					0	0	0.004990	0	0
CTDP1	9150	broad.mit.edu	37	18	77474635	77474635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:77474635C>T	uc002lnh.1	+	8	1322	c.1175C>T	c.(1174-1176)CCG>CTG	p.P392L	CTDP1_uc002lni.1_Missense_Mutation_p.P392L|CTDP1_uc010drd.1_Missense_Mutation_p.P392L	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	392					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		GCCGCCACCCCGCGGGACTCA	0.716													6	8					0	0	0.003080	0	0
KCNG2	26251	broad.mit.edu	37	18	77659451	77659451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr18:77659451G>A	uc010xfl.1	+	2	1036	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	346					energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		GGCCGAGCGCGAGCTGGGCGC	0.711													4	8					0	0	0.000248	0	0
MIER2	54531	broad.mit.edu	37	19	307127	307127	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:307127G>A	uc002lok.1	-	13	1617	c.1608C>T	c.(1606-1608)CCC>CCT	p.P536P		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	536					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTGTGACAGGGGCTCCGAGT	0.672													10	5					0	0	0.000673	0	0
MIER2	54531	broad.mit.edu	37	19	311857	311857	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:311857G>A	uc002lok.1	-	10	981	c.972C>T	c.(970-972)ATC>ATT	p.I324I		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	324	SANT.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGTTGGCCTGGATCAGGTGAA	0.622													11	21					0	0	0.000978	0	0
THEG	51298	broad.mit.edu	37	19	373504	373504	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:373504G>A	uc002lol.2	-	4	570	c.531C>T	c.(529-531)TTC>TTT	p.F177F	THEG_uc002lom.2_Silent_p.F153F	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	177					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGTCCTCAAGGAACCGCTCGG	0.682													15	23					0	0	0.004990	0	0
MADCAM1	8174	broad.mit.edu	37	19	501732	501732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:501732C>T	uc002los.2	+	4	741	c.731C>T	c.(730-732)ACC>ATC	p.T244I	MADCAM1_uc002lot.2_Intron|MADCAM1_uc010drq.2_Intron	NM_130760	NP_570116	Q13477	MADCA_HUMAN	mucosal vascular addressin cell adhesion	244	5.5 X 8 AA tandem repeats of [PS]-P-D-T- T-S-[QP]-E.|Extracellular (Potential).|3.|Mucin-like.				cell adhesion|immune response|regulation of immune response|signal transduction	integral to membrane|membrane fraction|plasma membrane					0		all_cancers(10;4.25e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCGACACCACCTCCCCGGAG	0.682													7	11					0	0	0.000443	0	0
PALM	5064	broad.mit.edu	37	19	746432	746432	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:746432A>C	uc002lpm.1	+	9	976	c.782A>C	c.(781-783)GAG>GCG	p.E261A	PALM_uc002lpn.1_Missense_Mutation_p.E217A|PALM_uc010xfu.1_Missense_Mutation_p.E126A	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	261					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		GGGGCTGTGGAGGGGGCAGCC	0.741													8	15					0	0	0.004482	0	0
PALM	5064	broad.mit.edu	37	19	746527	746527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:746527G>A	uc002lpm.1	+	9	1071	c.877G>A	c.(877-879)GGC>AGC	p.G293S	PALM_uc002lpn.1_Missense_Mutation_p.G249S|PALM_uc010xfu.1_Missense_Mutation_p.G158S	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	293					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		GATCCAGCCCGGCCAGGAGCC	0.677													18	21					0	0	0.002780	0	0
MED16	10025	broad.mit.edu	37	19	873482	873482	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:873482G>A	uc002lqd.1	-	11	2023	c.1872C>T	c.(1870-1872)TTC>TTT	p.F624F	MED16_uc010drw.1_Silent_p.F449F|MED16_uc002lqe.2_Silent_p.F613F|MED16_uc002lqf.2_Silent_p.F613F|MED16_uc010xfv.1_RNA|MED16_uc010xfw.1_Silent_p.F544F|MED16_uc010xfx.1_Silent_p.F469F|MED16_uc010xfy.1_Silent_p.F201F	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	624					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTACAGCACGAAGTCGCCCA	0.612													17	27					0	0	0.001523	0	0
KISS1R	84634	broad.mit.edu	37	19	917677	917677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:917677G>A	uc002lqk.3	+	1	336	c.175G>A	c.(175-177)GGG>AGG	p.G59R		NM_032551	NP_115940	Q969F8	KISSR_HUMAN	G protein-coupled receptor 54	59	Helical; Name=1; (Potential).				behavior	integral to membrane|plasma membrane	neuropeptide receptor activity|protein binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCTGGTGGGGAACTCGCT	0.692													6	6					0	0	0.001984	0	0
GRIN3B	116444	broad.mit.edu	37	19	1005327	1005327	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:1005327C>T	uc002lqo.1	+	3	1827	c.1827C>T	c.(1825-1827)AAC>AAT	p.N609N		NM_138690	NP_619635	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic,	609	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity				0		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	GTGGCCGCAACCGCAGCACCG	0.667													22	27					0	0	0.001882	0	0
C19orf6	91304	broad.mit.edu	37	19	1014470	1014470	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:1014470G>A	uc002lqr.1	-	2	374	c.228C>T	c.(226-228)GCC>GCT	p.A76A	C19orf6_uc002lqq.1_5'Flank|C19orf6_uc002lqs.1_Silent_p.A76A	NM_001033026	NP_001028198	Q4ZIN3	MBRL_HUMAN	membralin isoform 1	76	Helical; (Potential).					cytoplasm|integral to membrane				pancreas(2)|breast(1)	3		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.0252)|STAD - Stomach adenocarcinoma(1328;0.18)		GCACAAACAGGGCCTAGGGGG	0.682													12	27					0	0	0.004007	0	0
HMHA1	23526	broad.mit.edu	37	19	1068553	1068553	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:1068553C>T	uc002lqz.1	+	2	462	c.231C>T	c.(229-231)TTC>TTT	p.F77F	HMHA1_uc010xgd.1_Silent_p.F93F|HMHA1_uc010xge.1_Intron|HMHA1_uc002lra.1_5'UTR|HMHA1_uc002lrb.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	77					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGCTGGCTTCCCCCTGTCGG	0.761													4	10					0	0	0.001984	0	0
DAZAP1	26528	broad.mit.edu	37	19	1430315	1430315	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:1430315C>T	uc002lsn.2	+	10	1014	c.825C>T	c.(823-825)CCC>CCT	p.P275P	DAZAP1_uc002lsm.2_Silent_p.P275P|DAZAP1_uc002lso.2_Silent_p.P274P|DAZAP1_uc002lsl.1_Silent_p.P275P	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	275	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGGCTTTCCCCCTCCCCAGG	0.677													7	10					0	0	0.003080	0	0
DAZAP1	26528	broad.mit.edu	37	19	1434829	1434829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:1434829C>T	uc002lsn.2	+	12	1331	c.1142C>T	c.(1141-1143)TCG>TTG	p.S381L	DAZAP1_uc002lsm.2_3'UTR|DAZAP1_uc002lso.2_Missense_Mutation_p.S380L|DAZAP1_uc002lsl.1_Missense_Mutation_p.S380L	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	381	Pro-rich.		S -> T (in a breast cancer sample; somatic mutation).		cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding	p.S381T(1)		breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGCCAGGGTcggggggcccc	0.597													11	14					0	0	0.000978	0	0
APC2	10297	broad.mit.edu	37	19	1465875	1465875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:1465875G>A	uc002lsr.1	+	15	2783	c.2575G>A	c.(2575-2577)GAG>AAG	p.E859K	APC2_uc002lss.1_Missense_Mutation_p.E441K|APC2_uc002lst.1_Missense_Mutation_p.E859K|APC2_uc002lsu.1_Missense_Mutation_p.E858K|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	859	Potential.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGCTGGTGGAGGACATCTC	0.692													6	7					0	0	0.001984	0	0
ATP8B3	148229	broad.mit.edu	37	19	1784832	1784832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:1784832C>T	uc002ltw.2	-	28	3880	c.3646G>A	c.(3646-3648)GAG>AAG	p.E1216K	ATP8B3_uc002ltv.2_Missense_Mutation_p.E1179K|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1216	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCACGTAGCTCCTTGAGGGCT	0.622													4	8					0	0	0.000248	0	0
ATP8B3	148229	broad.mit.edu	37	19	1785223	1785223	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:1785223A>T	uc002ltw.2	-	27	3701	c.3467T>A	c.(3466-3468)ATC>AAC	p.I1156N	ATP8B3_uc002ltv.2_Missense_Mutation_p.I1119N|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1156	Helical; (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTAGTCATGATGGCGTAGAA	0.587													11	9					0	0	0.001368	0	0
LINGO3	645191	broad.mit.edu	37	19	2290660	2290660	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:2290660G>A	uc010dsx.1	-	2	1244	c.1116C>T	c.(1114-1116)TTC>TTT	p.F372F	SPPL2B_uc010dsw.1_Intron|uc002lvo.1_5'UTR	NM_001101391	NP_001094861	P0C6S8	LIGO3_HUMAN	leucine rich repeat and Ig domain containing 3	372	Extracellular (Potential).|LRRCT.					integral to membrane					0						GCCGCCCGTCGAAGTTGAGGG	0.692													7	5					0	0	0.001984	0	0
DIRAS1	148252	broad.mit.edu	37	19	2717356	2717356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:2717356G>A	uc002lwf.3	-	2	607	c.449C>T	c.(448-450)TCG>TTG	p.S150L		NM_145173	NP_660156	O95057	DIRA1_HUMAN	DIRAS family, GTP-binding RAS-like 1	150					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CATCTTGGCCGAGGTCTCCAT	0.632													20	33					0	0	0.001216	0	0
ZNF556	80032	broad.mit.edu	37	19	2877898	2877898	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:2877898C>T	uc002lwp.1	+	4	1029	c.942C>T	c.(940-942)CCC>CCT	p.P314P	ZNF556_uc002lwq.2_Silent_p.P313P	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGAGAAACCCTATAAGTGTG	0.527													20	13					0	0	0.001882	0	0
GNA15	2769	broad.mit.edu	37	19	3155824	3155824	+	Silent	SNP	C	T	T	rs140382547		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3155824C>T	uc002lxf.2	+	5	876	c.618C>T	c.(616-618)ATC>ATT	p.I206I		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	206					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		CCTGTAGGATCGTGGACGTCG	0.557													15	35					0	0	0.004007	0	0
GIPC3	126326	broad.mit.edu	37	19	3590104	3590104	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3590104C>T	uc002lyd.3	+	6	882	c.855C>T	c.(853-855)TCC>TCT	p.S285S		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	285										breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		GTTTAGACTCCGTCTTGGGCG	0.637													11	15					0	0	0.000978	0	0
TJP3	27134	broad.mit.edu	37	19	3730372	3730372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3730372G>A	uc010xhv.1	+	4	338	c.338G>A	c.(337-339)AGG>AAG	p.R113K	TJP3_uc010xhs.1_Missense_Mutation_p.R94K|TJP3_uc010xht.1_Missense_Mutation_p.R58K|TJP3_uc010xhu.1_Missense_Mutation_p.R103K|TJP3_uc010xhw.1_Missense_Mutation_p.R113K	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	94						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CGTCCCCGGAGGATCCACCTG	0.572													4	5					0	0	0.000248	0	0
TJP3	27134	broad.mit.edu	37	19	3735567	3735567	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3735567G>A	uc010xhv.1	+	8	1089	c.1089G>A	c.(1087-1089)GAG>GAA	p.E363E	TJP3_uc010xhs.1_Silent_p.E330E|TJP3_uc010xht.1_Silent_p.E294E|TJP3_uc010xhu.1_Silent_p.E339E|TJP3_uc010xhw.1_Silent_p.E349E	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	344						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CCACCAGGGAGAGTCCCCGGC	0.458													47	65					0	0	0.003610	0	0
TJP3	27134	broad.mit.edu	37	19	3744028	3744028	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3744028C>T	uc010xhv.1	+	14	2034	c.2034C>T	c.(2032-2034)ATC>ATT	p.I678I	TJP3_uc010xhs.1_Silent_p.I645I|TJP3_uc010xht.1_Silent_p.I609I|TJP3_uc010xhu.1_Silent_p.I654I|TJP3_uc010xhw.1_Silent_p.I664I	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	659	Guanylate kinase-like.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTTTGAAATCGCAGGTGAGA	0.493													35	49					0	0	0.005524	0	0
MATK	4145	broad.mit.edu	37	19	3778394	3778394	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3778394C>T	uc002lyt.2	-	14	1711	c.1311G>A	c.(1309-1311)GTG>GTA	p.V437V	MATK_uc002lyv.2_Silent_p.V438V|MATK_uc002lyu.2_Silent_p.V396V|MATK_uc010dtq.2_Silent_p.V436V	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	437	Protein kinase.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCCCTTCTCCACGGCCTCCG	0.706													16	26					0	0	0.000958	0	0
ZFR2	23217	broad.mit.edu	37	19	3834946	3834946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3834946C>T	uc002lyw.2	-	2	101	c.89G>A	c.(88-90)GGG>GAG	p.G30E	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	30						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		ATAGCTGGCCCCCACAGTGGG	0.637													5	10					0	0	0.001168	0	0
ATCAY	85300	broad.mit.edu	37	19	3905569	3905569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3905569G>A	uc002lyy.3	+	4	704	c.274G>A	c.(274-276)GAT>AAT	p.D92N	ATCAY_uc010xhz.1_Missense_Mutation_p.D98N	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	92					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		TGATGACCTGGATATTAACGT	0.537													40	50					0	0	0.001951	0	0
DAPK3	1613	broad.mit.edu	37	19	3964704	3964704	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3964704G>A	uc002lzc.1	-	2	441	c.348C>T	c.(346-348)GCC>GCT	p.A116A	DAPK3_uc002lzb.1_5'Flank|DAPK3_uc002lzd.1_Silent_p.A116A	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	116	Protein kinase.				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAACTGGGTGGCCTCGTCCT	0.607													19	61					0	0	0.001523	0	0
EEF2	1938	broad.mit.edu	37	19	3977513	3977513	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:3977513G>A	uc002lze.2	-	13	2246	c.2163C>T	c.(2161-2163)ATC>ATT	p.I721I		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	721						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGTGGGGATGATCTGGCCCC	0.662													5	13					0	0	0.000602	0	0
CREB3L3	84699	broad.mit.edu	37	19	4171147	4171147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:4171147C>T	uc002lzl.2	+	8	1066	c.950C>T	c.(949-951)TCA>TTA	p.S317L	CREB3L3_uc002lzm.2_Missense_Mutation_p.S307L|CREB3L3_uc010xib.1_Missense_Mutation_p.S306L|CREB3L3_uc010xic.1_Silent_p.V272V	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	317	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCAGCAAGTCAGCCCAGACA	0.607													20	27					0	0	0.001882	0	0
ANKRD24	170961	broad.mit.edu	37	19	4224189	4224189	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:4224189G>A	uc010dtt.1	+	21	3639	c.3363G>A	c.(3361-3363)CAG>CAA	p.Q1121Q		NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	1121											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		ATGCCATTCAGGTGAGtggcc	0.313													7	14					0	0	0.001984	0	0
SHD	56961	broad.mit.edu	37	19	4283085	4283085	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:4283085C>T	uc002lzw.2	+	3	1901	c.438C>T	c.(436-438)ACC>ACT	p.T146T	SHD_uc010dtu.2_Silent_p.T146T	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	146											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTATGACACCCCTTATGAGG	0.617													13	24					0	0	0.002450	0	0
TMIGD2	126259	broad.mit.edu	37	19	4292607	4292607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:4292607C>T	uc002lzx.1	-	5	884	c.838G>A	c.(838-840)GGA>AGA	p.G280R	TMIGD2_uc010dtv.1_Missense_Mutation_p.G276R	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain	280	Cytoplasmic (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		CACTCCTCTCCCACTTTGGGG	0.443													66	66					0	0	0.003610	0	0
SH3GL1	6455	broad.mit.edu	37	19	4361744	4361744	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:4361744C>T	uc002maj.2	-	10	1066	c.960G>A	c.(958-960)GAG>GAA	p.E320E	SH3GL1_uc002mak.2_Silent_p.E256E|SH3GL1_uc010xig.1_Silent_p.E272E	NM_003025	NP_003016	Q99961	SH3G1_HUMAN	SH3-domain GRB2-like 1	320	SH3.				central nervous system development|endocytosis|signal transduction	early endosome membrane	lipid binding|protein binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0152)|STAD - Stomach adenocarcinoma(1328;0.182)		CCCCGTCGTTCTCGGGCTCGA	0.687			T	MLL	AL								14	36					0	0	0.004990	0	0
PLIN4	729359	broad.mit.edu	37	19	4511347	4511347	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:4511347C>T	uc002mar.1	-	3	2583	c.2583G>A	c.(2581-2583)GTG>GTA	p.V861V	PLIN4_uc010dub.1_Intron	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	861	27 X 33 AA approximate tandem repeat.|24.					lipid particle|plasma membrane					0						CCCCTTTGGCCACTTTCGCAG	0.577													24	60					0	0	0.005443	0	0
ARRDC5	645432	broad.mit.edu	37	19	4902757	4902757	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:4902757C>T	uc002mbm.2	-	1	123	c.123G>A	c.(121-123)GTG>GTA	p.V41V		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	41					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		GGGTTAAGATCACCTGCCCTT	0.562													28	55					0	0	0.001061	0	0
TMEM146	257062	broad.mit.edu	37	19	5763295	5763295	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:5763295C>T	uc002mda.2	+	16	1558	c.1497C>T	c.(1495-1497)ATC>ATT	p.I499I	TMEM146_uc010duj.1_Silent_p.I157I	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	499	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						GTGTGGATATCAAGCCACTGG	0.388													21	22					0	0	0.002299	0	0
FUT6	2528	broad.mit.edu	37	19	5831614	5831614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:5831614C>T	uc002mdf.1	-	4	1491	c.965G>A	c.(964-966)CGG>CAG	p.R322Q	FUT6_uc002mdg.1_Missense_Mutation_p.R322Q|FUT6_uc002mdh.1_Missense_Mutation_p.R322Q|FUT6_uc010dul.1_Missense_Mutation_p.R322Q	NM_001040701	NP_001035791	P51993	FUT6_HUMAN	fucosyltransferase 6	322	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						CAGCGTCTCCCGCCAGCGAAA	0.632													20	29					0	0	0.003954	0	0
FUT5	2527	broad.mit.edu	37	19	5867303	5867303	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:5867303C>T	uc002mdo.3	-	2	522	c.434G>A	c.(433-435)TGG>TAG	p.W145*	FUT5_uc010duo.2_Nonsense_Mutation_p.W145*	NM_002034	NP_002025	Q11128	FUT5_HUMAN	fucosyltransferase 5	145	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						GAACCAGATCCAGCGCTGCCC	0.627													16	26					0	0	0.004990	0	0
FUT5	2527	broad.mit.edu	37	19	5867503	5867503	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:5867503G>A	uc002mdo.3	-	2	322	c.234C>T	c.(232-234)ATC>ATT	p.I78I	FUT5_uc010duo.2_Silent_p.I78I	NM_002034	NP_002025	Q11128	FUT5_HUMAN	fucosyltransferase 5	78	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						TCCACAGCAGGATCAGTAGGG	0.657													18	22					0	0	0.001216	0	0
ACSBG2	81616	broad.mit.edu	37	19	6182904	6182904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:6182904G>A	uc002mef.1	+	9	1276	c.1049G>A	c.(1048-1050)AGA>AAA	p.R350K	ACSBG2_uc002mee.1_Missense_Mutation_p.R163K|ACSBG2_uc002meg.1_Missense_Mutation_p.R350K|ACSBG2_uc002meh.1_Missense_Mutation_p.R350K|ACSBG2_uc002mei.1_Missense_Mutation_p.R300K|ACSBG2_uc010xiz.1_Missense_Mutation_p.R350K	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	350					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						GTGTGGGCAAGAAACATTGGC	0.483													33	41					0	0	0.003755	0	0
MLLT1	4298	broad.mit.edu	37	19	6270642	6270642	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:6270642G>A	uc002mek.2	-	2	305	c.141C>T	c.(139-141)TTC>TTT	p.F47F		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	47	YEATS.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						CCTTCTCCACGAAGTGCTGGA	0.627			T	MLL	AL						OREG0025198	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	14					0	0	0.001368	0	0
ACER1	125981	broad.mit.edu	37	19	6309842	6309842	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:6309842G>A	uc002mel.2	-	4	432	c.354C>T	c.(352-354)TCC>TCT	p.S118S		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	118	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						GGATGAACTGGGACCTGGGGA	0.617													18	25					0	0	0.001523	0	0
C3	718	broad.mit.edu	37	19	6679182	6679182	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:6679182G>A	uc002mfm.2	-	38	4646	c.4584C>T	c.(4582-4584)ACC>ACT	p.T1528T	C3_uc002mfl.2_Silent_p.T264T	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1528	NTR.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GTTCTTCCAGGGTGACCTTGT	0.552													9	27					0	0	0.000978	0	0
C3	718	broad.mit.edu	37	19	6681979	6681979	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:6681979C>T	uc002mfm.2	-	35	4385	c.4323G>A	c.(4321-4323)AGG>AGA	p.R1441R	C3_uc002mfl.2_Silent_p.R177R	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1441	Properdin-binding.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TGAGGGTGTTCCTATCGGAGA	0.532													60	85					0	0	0.003610	0	0
EMR1	2015	broad.mit.edu	37	19	6926380	6926380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:6926380G>A	uc002mfw.2	+	16	2028	c.1990G>A	c.(1990-1992)GGC>AGC	p.G664S	EMR1_uc010dvc.2_Missense_Mutation_p.G599S|EMR1_uc010dvb.2_Missense_Mutation_p.G612S|EMR1_uc010xji.1_Missense_Mutation_p.G523S|EMR1_uc010xjj.1_Missense_Mutation_p.G487S	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	664	Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CCTCCAGATGGGCTGCGCCAT	0.532													21	23					0	0	0.003954	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7509205	7509205	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:7509205C>T	uc002mgi.2	+	4	1165	c.912C>T	c.(910-912)TTC>TTT	p.F304F	ARHGEF18_uc010xjm.1_Silent_p.F146F|ARHGEF18_uc002mgh.2_Silent_p.F146F|ARHGEF18_uc002mgj.1_5'Flank	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	304	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				GCCGCCTCTTCCCATGCGCTG	0.632													17	22					0	0	0.000958	0	0
KIAA1543	57662	broad.mit.edu	37	19	7677134	7677134	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:7677134C>T	uc002mgv.3	+	11	1856	c.1755C>T	c.(1753-1755)TCC>TCT	p.S585S	KIAA1543_uc002mgu.3_Silent_p.S612S|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	585					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GAGCGGGGTCCCCCACGTCCA	0.647													6	6					0	0	0.001168	0	0
KIAA1543	57662	broad.mit.edu	37	19	7682509	7682509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:7682509G>A	uc002mgv.3	+	16	3507	c.3406G>A	c.(3406-3408)GGC>AGC	p.G1136S	KIAA1543_uc002mgu.3_Missense_Mutation_p.G1163S|KIAA1543_uc002mgw.2_Missense_Mutation_p.G266S	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	1136	CKK.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CTGCCTGGCGGGCAAGGTGAA	0.607													12	16					0	0	0.000978	0	0
LRRC8E	80131	broad.mit.edu	37	19	7963610	7963610	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:7963610C>A	uc002mir.2	+	3	304	c.203C>A	c.(202-204)CCG>CAG	p.P68Q		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	68						integral to membrane				lung(1)|pancreas(1)	2						TCAGAGGCCCCGTGCCAGCAA	0.493													7	100					0.00307968	0.00528618	0.003080	1	0
FBN3	84467	broad.mit.edu	37	19	8146339	8146339	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:8146339G>A	uc002mjf.2	-	57	7260	c.7239C>T	c.(7237-7239)CCC>CCT	p.P2413P	FBN3_uc002mje.2_Silent_p.P252P	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2413	EGF-like 39; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TACATGGCTTGGGGACCTGGC	0.592													28	25					0	0	0.002836	0	0
FBN3	84467	broad.mit.edu	37	19	8188379	8188379	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:8188379G>A	uc002mjf.2	-	23	3072	c.3051C>T	c.(3049-3051)TTC>TTT	p.F1017F		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1017	EGF-like 12; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CATCCAGGGCGAAGCCCCCCG	0.597													9	12					0	0	0.004482	0	0
FBN3	84467	broad.mit.edu	37	19	8212199	8212199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:8212199C>T	uc002mjf.2	-	1	187	c.166G>A	c.(166-168)GGG>AGG	p.G56R		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	56						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACCACGCACCCCTGCAAGATG	0.692													5	8					0	0	0.001168	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8670589	8670589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:8670589G>A	uc002mkj.1	-	3	281	c.7C>T	c.(7-9)CCC>TCC	p.P3S	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	3					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						TGGCAGGCGGGAGCCATAGAG	0.682													8	7					0	0	0.004482	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841976	8841976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:8841976G>A	uc010xkg.1	+	1	586	c.586G>A	c.(586-588)GAG>AAG	p.E196K		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						CTGTGCCTACGAGATGGCGCT	0.567													38	38					0	0	0.004878	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953931	8953931	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:8953931A>G	uc002mko.2	+	1	663	c.577A>G	c.(577-579)AAA>GAA	p.K193E		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	193					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CCGTCCTGAAAAACGCTAAGA	0.418													13	18					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	8987295	8987295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:8987295G>A	uc002mkp.2	-	68	41996	c.41792C>T	c.(41791-41793)ACC>ATC	p.T13931I	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.T748I|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13956	Extracellular (Potential).|SEA 13.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTGTTGATGGTGAAGTTCAG	0.592													22	33					0	0	0.002299	0	0
MUC16	94025	broad.mit.edu	37	19	8996339	8996339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:8996339C>T	uc002mkp.2	-	61	41437	c.41233G>A	c.(41233-41235)GAC>AAC	p.D13745N	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.D562N|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13747	Extracellular (Potential).|SEA 11.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGAGGCTGTCGTTGTCCAGG	0.542													61	86					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9014700	9014700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9014700C>T	uc002mkp.2	-	31	38479	c.38275G>A	c.(38275-38277)GAG>AAG	p.E12759K	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12761	SEA 5.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCATCCTTCTCGGACCTGAGG	0.527													17	18					0	0	0.001882	0	0
MUC16	94025	broad.mit.edu	37	19	9046027	9046028	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9046027_9046028GG>AA	uc002mkp.2	-	5	35807_35808	c.35603_35604CC>TT	c.(35602-35604)TCC>TTT	p.S11868F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11870	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAAACCAAGGGAAAGAGTTGA	0.505													54	72					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9047769	9047769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9047769C>T	uc002mkp.2	-	5	34066	c.33862G>A	c.(33862-33864)GAA>AAA	p.E11288K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11290	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTCTAATTCACTGTGGGAA	0.478													21	26					0	0	0.001523	0	0
MUC16	94025	broad.mit.edu	37	19	9048182	9048182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9048182C>T	uc002mkp.2	-	5	33653	c.33449G>A	c.(33448-33450)GGA>GAA	p.G11150E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11152	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCACCATTCCTGGTACCTC	0.468													23	28					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9057157	9057157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9057157G>A	uc002mkp.2	-	3	30493	c.30289C>T	c.(30289-30291)CAT>TAT	p.H10097Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10099	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGAAGGATGAATTTTCTCT	0.468													52	52					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9057747	9057747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9057747C>T	uc002mkp.2	-	3	29903	c.29699G>A	c.(29698-29700)GGA>GAA	p.G9900E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9902	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGGCACTCCATAAAGGAC	0.468													35	81					0	0	0.003214	0	0
MUC16	94025	broad.mit.edu	37	19	9058027	9058027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9058027G>A	uc002mkp.2	-	3	29623	c.29419C>T	c.(29419-29421)CAT>TAT	p.H9807Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9809	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGAAGGATGAATTTTCTCT	0.448													15	45					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	9058186	9058186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9058186G>A	uc002mkp.2	-	3	29464	c.29260C>T	c.(29260-29262)CCT>TCT	p.P9754S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9756	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACAGGAAGAGGAGAGGAGGGG	0.468													12	24					0	0	0.001368	0	0
MUC16	94025	broad.mit.edu	37	19	9058245	9058245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9058245G>A	uc002mkp.2	-	3	29405	c.29201C>T	c.(29200-29202)CCT>CTT	p.P9734L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9736	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCGTGAGAGGTAATGATGT	0.502													14	20					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9060853	9060853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9060853G>A	uc002mkp.2	-	3	26797	c.26593C>T	c.(26593-26595)CCT>TCT	p.P8865S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8867	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGCGAAGGTGAGGTTACT	0.502													37	57					0	0	0.004289	0	0
MUC16	94025	broad.mit.edu	37	19	9063558	9063558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9063558G>A	uc002mkp.2	-	3	24092	c.23888C>T	c.(23887-23889)CCC>CTC	p.P7963L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7965	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCAGAAGGGGAGGGCTCAT	0.458													25	30					0	0	0.002780	0	0
MUC16	94025	broad.mit.edu	37	19	9063951	9063952	+	Missense_Mutation	DNP	CC	TT	TT	rs144610010	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9063951_9063952CC>TT	uc002mkp.2	-	3	23698_23699	c.23494_23495GG>AA	c.(23494-23496)GGA>AAA	p.G7832K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7834	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCCCTCAATCCAGGGGTCAGG	0.545													15	37					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9066356	9066356	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9066356G>A	uc002mkp.2	-	3	21294	c.21090C>T	c.(21088-21090)ATC>ATT	p.I7030I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7032	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTGAGTGGGGATGGTCATTT	0.493													107	116					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9069052	9069052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9069052C>T	uc002mkp.2	-	3	18598	c.18394G>A	c.(18394-18396)GAC>AAC	p.D6132N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6134	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGAAATGTCTGGGGACTTT	0.507													15	18					0	0	0.004007	0	0
MUC16	94025	broad.mit.edu	37	19	9072284	9072284	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9072284C>T	uc002mkp.2	-	3	15366	c.15162G>A	c.(15160-15162)CTG>CTA	p.L5054L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5056	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGAAGAAATCAGGGAAGGTG	0.478													40	42					0	0	0.004878	0	0
MUC16	94025	broad.mit.edu	37	19	9074244	9074244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9074244G>A	uc002mkp.2	-	3	13406	c.13202C>T	c.(13201-13203)CCA>CTA	p.P4401L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4403	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAAGAGATATGGACCCTGTGT	0.473													50	83					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9076530	9076530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9076530C>T	uc002mkp.2	-	3	11120	c.10916G>A	c.(10915-10917)GGA>GAA	p.G3639E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3640	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGCTGGTTCCAATGACAGT	0.448													18	45					0	0	0.001882	0	0
MUC16	94025	broad.mit.edu	37	19	9086617	9086617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9086617G>A	uc002mkp.2	-	1	5402	c.5198C>T	c.(5197-5199)TCC>TTC	p.S1733F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1733	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.S1733Y(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCAAGAGAGGAGGAGAGAGC	0.498													34	51					0	0	0.002445	0	0
MUC16	94025	broad.mit.edu	37	19	9088509	9088509	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9088509G>A	uc002mkp.2	-	1	3510	c.3306C>T	c.(3304-3306)TTC>TTT	p.F1102F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1102	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGTGTCAACGAATTGGCTTG	0.428													47	51					0	0	0.003610	0	0
OR7G1	125962	broad.mit.edu	37	19	9226317	9226317	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9226317C>T	uc002mks.1	-	1	123	c.123G>A	c.(121-123)GGG>GGA	p.G41G		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						TGAGCAGGTTCCCCAGGATGG	0.473													53	66					0	0	0.003610	0	0
OR7D2	162998	broad.mit.edu	37	19	9296980	9296980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9296980C>T	uc002mkz.1	+	1	711	c.523C>T	c.(523-525)CCA>TCA	p.P175S		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	175	Extracellular (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TTTTGAAATTCCACATTTTTT	0.458													65	93					0	0	0.003610	0	0
ZNF560	147741	broad.mit.edu	37	19	9578225	9578225	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9578225C>T	uc002mlp.1	-	10	1608	c.1398G>A	c.(1396-1398)GGG>GGA	p.G466G	ZNF560_uc010dwr.1_Silent_p.G360G	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	466					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CAAAGGCCTTCCCATATTCCT	0.403													123	199					0	0	0.003610	0	0
OLFM2	93145	broad.mit.edu	37	19	9967571	9967571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:9967571C>T	uc002mmp.2	-	5	627	c.599G>A	c.(598-600)GGG>GAG	p.G200E	OLFM2_uc002mmo.2_Missense_Mutation_p.G122E	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	200	Olfactomedin-like.					extracellular region				large_intestine(1)|skin(1)	2						GTTACTGACCCCGGTCAGCTT	0.612													6	8					0	0	0.001984	0	0
COL5A3	50509	broad.mit.edu	37	19	10080329	10080330	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:10080329_10080330CC>GT	uc002mmq.1	-	56	4105_4106	c.4019_4020GG>AC	c.(4018-4020)GGG>GAC	p.G1340D		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1340	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GACCCGTCCTCCCTGGGGGCCC	0.673													6	6					0	0	0.004672	0	0
COL5A3	50509	broad.mit.edu	37	19	10108691	10108691	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:10108691A>T	uc002mmq.1	-	10	1255	c.1169T>A	c.(1168-1170)TTT>TAT	p.F390Y		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	390	Nonhelical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			AGGTCCCTCAAACTGCTGCCC	0.552													33	67					0	0	0.002096	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10220353	10220353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:10220353C>T	uc002mna.2	+	6	560	c.560C>T	c.(559-561)CCC>CTC	p.P187L	PPAN-P2RY11_uc010xla.1_Missense_Mutation_p.P187L|P2RY11_uc002mnc.2_5'Flank|PPAN_uc002mmz.1_Missense_Mutation_p.P187L|PPAN_uc002mnb.1_Missense_Mutation_p.P134L|SNORD105B_uc010dwz.1_5'Flank	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	187	Brix.				RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			GACTACAACCCCGACTCCCAG	0.602													60	108					0	0	0.003610	0	0
DNMT1	1786	broad.mit.edu	37	19	10247957	10247957	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:10247957C>T	uc002mng.2	-	36	4426	c.4246_splice	c.e36-1	p.D1416_splice	DNMT1_uc002mne.2_Splice_Site|DNMT1_uc002mnf.2_Splice_Site_p.D340_splice|DNMT1_uc010xlc.1_Splice_Site_p.D1432_splice|DNMT1_uc002mnh.2_Splice_Site_p.D1311_splice|DNMT1_uc010xld.1_Splice_Site_p.D1416_splice	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b						chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	CACTCATGTCCTGAAAGAGTG	0.637													3	10					0	0	0.000248	0	0
ZGLP1	100125288	broad.mit.edu	37	19	10418887	10418888	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:10418887_10418888GG>AA	uc002mnw.3	-	1	1346_1347	c.470_471CC>TT	c.(469-471)TCC>TTT	p.S157F	FDX1L_uc002mnx.1_RNA	NM_001103167	NP_001096637	P0C6A0	ZGLP1_HUMAN	GATA like protein-1	157					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TCTGCAGGCTGGAGTCCGGCTT	0.629													37	36					0	0	0.004672	0	0
SMARCA4	6597	broad.mit.edu	37	19	11152064	11152064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:11152064G>A	uc002mqf.3	+	30	4536	c.4252G>A	c.(4252-4254)GAC>AAC	p.D1418N	SMARCA4_uc010dxp.2_Missense_Mutation_p.D1418N|SMARCA4_uc010dxo.2_Missense_Mutation_p.D1450N|SMARCA4_uc010dxq.2_Missense_Mutation_p.D1385N|SMARCA4_uc010dxr.2_Missense_Mutation_p.D1385N|SMARCA4_uc002mqj.3_Missense_Mutation_p.D1388N|SMARCA4_uc010dxs.2_Missense_Mutation_p.D1388N|SMARCA4_uc002mqh.3_Missense_Mutation_p.D508N	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1418					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GCGAGACAGCGACGCCGGCTC	0.632			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				22	20					0	0	0.001523	0	0
KANK2	25959	broad.mit.edu	37	19	11303680	11303680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:11303680G>A	uc010dxv.2	-	6	1634	c.1076C>T	c.(1075-1077)CCT>CTT	p.P359L	KANK2_uc002mqm.2_Missense_Mutation_p.P359L|KANK2_uc002mqo.3_Missense_Mutation_p.P359L|KANK2_uc002mqp.1_Missense_Mutation_p.P168L|KANK2_uc002mqq.2_Missense_Mutation_p.P359L	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	359											0						TGTGCCGTAAGGCTCCAGGCT	0.692													16	16					0	0	0.003163	0	0
TSPAN16	26526	broad.mit.edu	37	19	11422832	11422832	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:11422832C>T	uc002mqv.1	+	6	771	c.621C>T	c.(619-621)CTC>CTT	p.L207L	TSPAN16_uc002mqu.1_RNA|uc002mqw.1_Intron	NM_012466	NP_036598	Q9UKR8	TSN16_HUMAN	transmembrane 4 superfamily member 16	207	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						TCCATAAACTCCTAAAAATCA	0.502													13	26					0	0	0.004990	0	0
ZNF763	284390	broad.mit.edu	37	19	12089716	12089716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:12089716C>T	uc002msw.2	+	4	1132	c.977C>T	c.(976-978)TCC>TTC	p.S326F	ZNF763_uc010xmf.1_Missense_Mutation_p.S346F|ZNF763_uc002msv.2_Missense_Mutation_p.S329F|ZNF763_uc010xmg.1_Missense_Mutation_p.S204F	NM_001012753	NP_001012771	Q0D2J5	ZN763_HUMAN	zinc finger protein 763	326	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						AGTTACAGATCCTATCTTAGA	0.403													25	40					0	0	0.002780	0	0
MAN2B1	4125	broad.mit.edu	37	19	12769289	12769289	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:12769289G>A	uc002mub.2	-	8	1138	c.1062C>T	c.(1060-1062)TCC>TCT	p.S354S	MAN2B1_uc010dyv.1_Silent_p.S353S	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	354					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						AAGCGGGGGTGGAGTAGAGAA	0.622													7	17					0	0	0.004482	0	0
TNPO2	30000	broad.mit.edu	37	19	12826066	12826066	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:12826066G>A	uc002muo.2	-	7	824	c.639C>T	c.(637-639)ACC>ACT	p.T213T	TNPO2_uc002mup.2_Silent_p.T305T|TNPO2_uc002muq.2_Silent_p.T213T|TNPO2_uc002mur.2_Silent_p.T213T	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	213	HEAT 3.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						CCTCGATGAAGGTGTCAATAT	0.647													13	10					0	0	0.002450	0	0
TNPO2	30000	broad.mit.edu	37	19	12826134	12826134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:12826134G>A	uc002muo.2	-	7	756	c.571C>T	c.(571-573)CAC>TAC	p.H191Y	TNPO2_uc002mup.2_Missense_Mutation_p.H283Y|TNPO2_uc002muq.2_Missense_Mutation_p.H191Y|TNPO2_uc002mur.2_Missense_Mutation_p.H191Y	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	191	HEAT 2.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						GCGATGGCGTGGGACCTGGCG	0.667													11	10					0	0	0.000673	0	0
MAST1	22983	broad.mit.edu	37	19	12976547	12976547	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:12976547C>T	uc002mvm.2	+	16	1949	c.1821C>T	c.(1819-1821)CCC>CCT	p.P607P		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	607	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TCCTGTGGCCCGAGGGGGATG	0.438													24	53					0	0	0.004656	0	0
GCDH	2639	broad.mit.edu	37	19	13002951	13002951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:13002951C>T	uc002mvq.2	+	5	370	c.293C>T	c.(292-294)TCG>TTG	p.S98L	GCDH_uc010xms.1_Intron|GCDH_uc002mvp.2_Missense_Mutation_p.S98L|GCDH_uc010xmt.1_5'UTR|GCDH_uc010xmu.1_Intron	NM_000159	NP_000150	Q92947	GCDH_HUMAN	glutaryl-Coenzyme A dehydrogenase isoform a	98					lysine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|glutaryl-CoA dehydrogenase activity|protein binding				0						GAGATCATTTCGGAGATGGGG	0.547													14	24					0	0	0.003163	0	0
NACC1	112939	broad.mit.edu	37	19	13246834	13246834	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:13246834C>T	uc002mwm.2	+	2	981	c.813C>T	c.(811-813)ACC>ACT	p.T271T		NM_052876	NP_443108	Q96RE7	NACC1_HUMAN	transcriptional repressor NAC1	271					negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|protein homooligomerization|transcription, DNA-dependent	cytoplasm|nuclear body					0						GCGCCTACACCAGCGACAGCC	0.657													12	24					0	0	0.001855	0	0
CACNA1A	773	broad.mit.edu	37	19	13323213	13323213	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:13323213G>A	uc010dze.2	-	42	6413	c.6177C>T	c.(6175-6177)AGC>AGT	p.S2059S	CACNA1A_uc010xnd.1_Silent_p.S764S|CACNA1A_uc002mwx.3_Silent_p.S764S|CACNA1A_uc010dzc.2_Silent_p.S1584S|CACNA1A_uc002mwy.3_Silent_p.S2058S|CACNA1A_uc002mwv.3_Silent_p.S575S	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	2059	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	AGTTAGGCTGGCTGTTGGGCA	0.647													8	10					0	0	0.000673	0	0
NANOS3	342977	broad.mit.edu	37	19	13988435	13988435	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:13988435C>T	uc002mxj.3	+	1	486	c.373C>T	c.(373-375)CGA>TGA	p.R125*		NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3	106	C2HC 2.|Nanos-type.				anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			CGCCCACACCCGACGCTTCTG	0.657													7	13					0	0	0.004482	0	0
C19orf57	79173	broad.mit.edu	37	19	13996861	13996861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:13996861G>A	uc002mxl.1	-	7	1735	c.1676C>T	c.(1675-1677)CCT>CTT	p.P559L	C19orf57_uc002mxk.1_Missense_Mutation_p.P441L|C19orf57_uc002mxm.1_Missense_Mutation_p.P134L	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	559					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			GTTCCCCGAAGGAAAGAGCTG	0.622													15	20					0	0	0.004007	0	0
CC2D1A	54862	broad.mit.edu	37	19	14038819	14038819	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:14038819C>T	uc002mxo.2	+	23	2729	c.2430C>T	c.(2428-2430)GAC>GAT	p.D810D	CC2D1A_uc002mxp.2_Silent_p.D810D|CC2D1A_uc010dzh.2_Silent_p.D379D	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	810					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			TGGTCATTGACCCTGTGCCGG	0.657													25	47					0	0	0.003954	0	0
RLN3	117579	broad.mit.edu	37	19	14141608	14141608	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:14141608C>T	uc002mxw.1	+	2	277	c.277C>T	c.(277-279)CTG>TTG	p.L93L	IL27RA_uc002mxx.2_5'Flank|RLN3_uc010dzj.1_3'UTR	NM_080864	NP_543140	Q8WXF3	REL3_HUMAN	relaxin 3 preproprotein	93						extracellular region	hormone activity				0						GTGGCTGGCCCTGACCAAGTC	0.612													20	34					0	0	0.001523	0	0
DDX39	10212	broad.mit.edu	37	19	14523405	14523405	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:14523405G>A	uc010xnp.1	-	3	339	c.294C>T	c.(292-294)TTC>TTT	p.F98F	DDX39_uc002myo.2_Silent_p.F98F|DDX39_uc010dzl.2_RNA|DDX39_uc010dzm.1_Silent_p.F98F	NM_005804	NP_005795	O00148	DX39A_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	98	Helicase ATP-binding.				mRNA export from nucleus|nuclear mRNA splicing, via spliceosome	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding				0						TGGCCAGCACGAAGACCGCTG	0.637													19	27					0	0	0.000743	0	0
EMR3	84658	broad.mit.edu	37	19	14774249	14774249	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:14774249G>A	uc002mzi.3	-	3	328	c.180C>T	c.(178-180)TTC>TTT	p.F60F	EMR3_uc010dzp.2_Silent_p.F60F|EMR3_uc010xnv.1_Silent_p.F60F	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	60	Extracellular (Potential).|EGF-like 1.				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						TCTCCAAGGGGAATGTGAATA	0.303													26	39					0	0	0.001512	0	0
OR7A17	26333	broad.mit.edu	37	19	14991497	14991497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:14991497G>A	uc010xob.1	-	1	671	c.671C>T	c.(670-672)TCC>TTC	p.S224F		NM_030901	NP_112163	O14581	OR7AH_HUMAN	olfactory receptor, family 7, subfamily A,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					TGCACGTATGGAGGAAACTAT	0.483													49	48					0	0	0.003610	0	0
SLC1A6	6511	broad.mit.edu	37	19	15063782	15063782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:15063782G>A	uc002naa.1	-	8	1465	c.1457C>T	c.(1456-1458)CCC>CTC	p.P486L	SLC1A6_uc010dzu.1_Missense_Mutation_p.P408L|SLC1A6_uc010xod.1_Missense_Mutation_p.P422L	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	486	Helical; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	GTCTTCCGTGGGCAAGCCGAC	0.597													44	48					0	0	0.002522	0	0
NOTCH3	4854	broad.mit.edu	37	19	15276182	15276182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:15276182G>A	uc002nan.2	-	31	5888	c.5812C>T	c.(5812-5814)CTT>TTT	p.L1938F		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1938	Cytoplasmic (Potential).|ANK 4.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			AACCTACCAAGCTCATCCACA	0.557													23	34					0	0	0.001061	0	0
NOTCH3	4854	broad.mit.edu	37	19	15290071	15290071	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:15290071C>T	uc002nan.2	-	22	3559	c.3483G>A	c.(3481-3483)GAG>GAA	p.E1161E	NOTCH3_uc002nao.1_Silent_p.E1109E	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1161	Extracellular (Potential).|EGF-like 30; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CGCAGTCATCCTCATTAATCT	0.642													9	21					0	0	0.000443	0	0
BRD4	23476	broad.mit.edu	37	19	15375451	15375451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:15375451G>A	uc002nar.2	-	6	1198	c.976C>T	c.(976-978)CGG>TGG	p.R326W	BRD4_uc002nas.2_Missense_Mutation_p.R326W|BRD4_uc002nat.3_Missense_Mutation_p.R326W|BRD4_uc002nau.3_Missense_Mutation_p.R326W	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	326					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			TTCACAGGCCGGCTGCTCTCC	0.652			T	NUT|C15orf55	lethal midline carcinoma of young people						OREG0025319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	24					0	0	0.003163	0	0
AKAP8	10270	broad.mit.edu	37	19	15483978	15483978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:15483978G>A	uc002nav.2	-	5	606	c.545C>T	c.(544-546)TCC>TTC	p.S182F	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_5'UTR	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	182					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						GCCATCAAGGGAGCCCCGCTC	0.677													14	13					0	0	0.003163	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15586370	15586370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:15586370C>T	uc002nbf.3	-	2	1244	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K	PGLYRP2_uc002nbg.3_Missense_Mutation_p.E371K	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	371					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						TCAGTGAATTCCTTGGTAGCA	0.562													62	93					0	0	0.003610	0	0
CYP4F3	4051	broad.mit.edu	37	19	15760810	15760810	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:15760810C>T	uc002nbj.2	+	7	785	c.735C>T	c.(733-735)TTC>TTT	p.F245F	CYP4F3_uc010xok.1_Silent_p.F245F|CYP4F3_uc010xol.1_Silent_p.F245F|CYP4F3_uc010xom.1_Silent_p.F96F|CYP4F3_uc002nbk.2_Silent_p.F245F|CYP4F3_uc010xon.1_5'UTR	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	245					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						ACATAGACTTCCTGTATTATC	0.572													60	87					0	0	0.003610	0	0
CIB3	117286	broad.mit.edu	37	19	16278981	16278981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:16278981C>T	uc002nds.2	-	4	313	c.313G>A	c.(313-315)GAC>AAC	p.D105N	CIB3_uc010eae.2_Missense_Mutation_p.D44N|CIB3_uc010eaf.2_Intron|CIB3_uc010eag.2_Missense_Mutation_p.D56N	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	105	EF-hand 2.						calcium ion binding			ovary(1)	1						GCCTTGAGGTCGCGGGGAGCC	0.552													9	9					0	0	0.000443	0	0
SIN3B	23309	broad.mit.edu	37	19	16989322	16989322	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:16989322C>T	uc002ney.1	+	20	3287	c.3273C>T	c.(3271-3273)GTC>GTT	p.V1091V	SIN3B_uc002nez.1_Silent_p.V1059V|SIN3B_uc010xpi.1_Silent_p.V649V|SIN3B_uc010eaj.1_Silent_p.V27V	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	1091					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						AGCCCCTGGTCCTGCTCCGCC	0.677													4	0					0	0	0.000248	0	0
CPAMD8	27151	broad.mit.edu	37	19	17088253	17088253	+	Silent	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:17088253G>C	uc002nfb.2	-	15	1856	c.1824C>G	c.(1822-1824)GTC>GTG	p.V608V		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	561						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TGACGTAGAAGACCAGCAGGC	0.597													26	37					0	0	0.001271	0	0
MYO9B	4650	broad.mit.edu	37	19	17265205	17265205	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:17265205C>T	uc010eak.2	+	6	1331	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F	MYO9B_uc002nfi.2_Silent_p.F393F|MYO9B_uc002nfj.1_Silent_p.F393F	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	393	Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						TGGTGGGCTTCCTCCCCGCCA	0.582													27	34					0	0	0.001271	0	0
USHBP1	83878	broad.mit.edu	37	19	17373797	17373797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:17373797G>A	uc002nfs.1	-	4	319	c.206C>T	c.(205-207)ACT>ATT	p.T69I	USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.T5I|USHBP1_uc010eam.1_5'UTR	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	69							PDZ domain binding			ovary(1)	1						CTTCTTGTCAGTCCTGTGGAC	0.458													34	35					0	0	0.004289	0	0
C19orf62	29086	broad.mit.edu	37	19	17387376	17387376	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:17387376C>T	uc002nfu.2	+	7	760	c.642C>T	c.(640-642)ATC>ATT	p.I214I	C19orf62_uc010xpl.1_Silent_p.I139I|C19orf62_uc002nfv.2_Silent_p.I214I|C19orf62_uc010ean.2_RNA|C19orf62_uc002nfw.2_Silent_p.I214I	NM_014173	NP_054892	Q9NWV8	BABA1_HUMAN	mediator of Rap80 interactions and targeting 40	214	VWFA-like.				chromatin modification|double-strand break repair|G2/M transition DNA damage checkpoint|positive regulation of DNA repair|protein K63-linked deubiquitination|response to ionizing radiation	BRCA1-A complex|BRISC complex|cytoplasm	protein binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						TCCGCACCATCCTTGTCTACA	0.617													4	3					0	0	0.000248	0	0
C19orf62	29086	broad.mit.edu	37	19	17389768	17389768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:17389768C>T	uc002nfu.2	+	9	1019	c.901C>T	c.(901-903)CAC>TAC	p.H301Y	C19orf62_uc002nfv.2_Missense_Mutation_p.H301Y|C19orf62_uc010ean.2_Intron|C19orf62_uc002nfw.2_Missense_Mutation_p.H301Y|ANKLE1_uc010xpm.1_5'Flank|ANKLE1_uc002nga.2_5'Flank|ANKLE1_uc010eao.1_5'Flank|ANKLE1_uc010xpn.1_5'Flank|ANKLE1_uc002nfy.2_5'Flank|ANKLE1_uc002nfz.2_5'Flank	NM_014173	NP_054892	Q9NWV8	BABA1_HUMAN	mediator of Rap80 interactions and targeting 40	301					chromatin modification|double-strand break repair|G2/M transition DNA damage checkpoint|positive regulation of DNA repair|protein K63-linked deubiquitination|response to ionizing radiation	BRCA1-A complex|BRISC complex|cytoplasm	protein binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						ACTGTTGGCCCACCCCCTGCA	0.597													5	10					0	0	0.000602	0	0
ANKLE1	126549	broad.mit.edu	37	19	17397298	17397298	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:17397298C>T	uc002nga.2	+	9	2061	c.1785C>T	c.(1783-1785)CTC>CTT	p.L595L	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Silent_p.L591L|ANKLE1_uc010xpn.1_Missense_Mutation_p.S577F|ANKLE1_uc002nfy.2_Silent_p.L558L|ANKLE1_uc002nfz.2_Silent_p.L301L	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	595						nuclear envelope					0						ACCGTGCCCTCCTTGTCTTCC	0.657													6	11					0	0	0.001168	0	0
FAM129C	199786	broad.mit.edu	37	19	17654183	17654183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:17654183G>A	uc010xpr.1	+	12	1618	c.1480G>A	c.(1480-1482)GCC>ACC	p.A494T	FAM129C_uc010xpq.1_Missense_Mutation_p.A494T|FAM129C_uc002ngy.3_Missense_Mutation_p.A220T|FAM129C_uc010xpu.1_Missense_Mutation_p.A220T|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Missense_Mutation_p.A220T|FAM129C_uc002nhb.2_Missense_Mutation_p.A93T	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	494											0						TCTGACGACGGCCCTCAACTG	0.632													44	78					0	0	0.003214	0	0
UNC13A	23025	broad.mit.edu	37	19	17756525	17756525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:17756525C>T	uc002nhd.2	-	19	2578	c.2578G>A	c.(2578-2580)GTG>ATG	p.V860M		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	772					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						AGCGTCCGCACCTCAATGATC	0.597													4	16					0	0	0.001168	0	0
MAST3	23031	broad.mit.edu	37	19	18254689	18254689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:18254689C>T	uc002nhz.3	+	21	2369	c.2369C>T	c.(2368-2370)GCC>GTC	p.A790V		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	790							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						CCCAAGTTTGCCTTCTCATCA	0.627													9	16					0	0	0.000443	0	0
FKBP8	23770	broad.mit.edu	37	19	18652665	18652665	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:18652665T>A	uc002njk.1	-	2	229	c.116A>T	c.(115-117)GAG>GTG	p.E39V	FKBP8_uc002nji.1_5'Flank|FKBP8_uc010xqi.1_Missense_Mutation_p.E68V|FKBP8_uc002njj.1_Missense_Mutation_p.E39V|FKBP8_uc002njl.1_Missense_Mutation_p.E39V|FKBP8_uc002njm.1_Missense_Mutation_p.E39V|FKBP8_uc010ebr.1_5'UTR|FKBP8_uc002njn.2_RNA	NM_012181	NP_036313	Q14318	FKBP8_HUMAN	FK506-binding protein 8	39	Glu-rich.				apoptosis|interspecies interaction between organisms|intracellular signal transduction|protein folding	integral to endoplasmic reticulum membrane|mitochondrial membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding			ovary(1)	1						ttcctcctcctcttcctcctc	0.562													5	9					0	0	0.001168	0	0
KLHL26	55295	broad.mit.edu	37	19	18779140	18779140	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:18779140C>T	uc002njz.1	+	3	960	c.933C>T	c.(931-933)CTC>CTT	p.L311L		NM_018316	NP_060786	Q53HC5	KLH26_HUMAN	kelch-like 26	311	Kelch 1.									ovary(1)	1						TGCCCTCGCTCGTCACCTTCG	0.677													15	22					0	0	0.004007	0	0
COMP	1311	broad.mit.edu	37	19	18895057	18895057	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:18895057C>T	uc002nke.2	-	17	2067	c.2031G>A	c.(2029-2031)AAG>AAA	p.K677K	COMP_uc002nkd.2_Silent_p.K644K|COMP_uc010xqj.1_Silent_p.K624K	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	677	Mediates cell survival and induction of the IAP family of survival proteins.|TSP C-terminal.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						ACTTCTTGTCCTTCCAACCCA	0.632													26	56					0	0	0.001061	0	0
UPF1	5976	broad.mit.edu	37	19	18976399	18976399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:18976399C>T	uc002nkg.2	+	22	3357	c.3082C>T	c.(3082-3084)CGT>TGT	p.R1028C	UPF1_uc002nkf.2_Missense_Mutation_p.R1017C|UPF1_uc002nkh.2_Missense_Mutation_p.R272C	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	1028					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CAAGACTGGTCGTGGGGGACG	0.627													21	30					0	0	0.001523	0	0
SFRS14	10147	broad.mit.edu	37	19	19135628	19135628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:19135628G>A	uc002nkx.2	-	3	1675	c.1529C>T	c.(1528-1530)TCA>TTA	p.S510L	SFRS14_uc002nkz.1_Missense_Mutation_p.S524L|SFRS14_uc002nla.1_Missense_Mutation_p.S510L|SFRS14_uc002nlb.2_Missense_Mutation_p.S510L|SFRS14_uc010xqk.1_Missense_Mutation_p.S279L	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	510					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			CGCAGCAGGTGAGGGAGCTAT	0.527													33	76					0	0	0.003755	0	0
CILP2	148113	broad.mit.edu	37	19	19653703	19653703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:19653703C>T	uc002nmv.3	+	6	984	c.899C>T	c.(898-900)TCC>TTC	p.S300F	CILP2_uc002nmw.3_Missense_Mutation_p.S306F	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	300	Ig-like C2-type.					proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CACCCTGAGTCCCGAGTGCGA	0.602													33	49					0	0	0.001287	0	0
CILP2	148113	broad.mit.edu	37	19	19654194	19654194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:19654194C>T	uc002nmv.3	+	7	1200	c.1115C>T	c.(1114-1116)ACT>ATT	p.T372I	CILP2_uc002nmw.3_Missense_Mutation_p.T378I	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	372	Ig-like C2-type.					proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CGCTCGGGCACTGCCCGGCTC	0.647													23	32					0	0	0.003330	0	0
CILP2	148113	broad.mit.edu	37	19	19655943	19655943	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:19655943C>T	uc002nmv.3	+	8	2674	c.2589C>T	c.(2587-2589)CTC>CTT	p.L863L	CILP2_uc002nmw.3_Silent_p.L869L	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	863						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GCATCAACCTCGCCAAGCCCA	0.697													15	24					0	0	0.004990	0	0
ZNF253	56242	broad.mit.edu	37	19	19989412	19989412	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:19989412C>T	uc002noj.2	+	2	218	c.126C>T	c.(124-126)TTC>TTT	p.F42F	ZNF253_uc002nok.2_Intron|ZNF253_uc002nol.2_Intron	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	42	KRAB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACTTGGTCTTCCTTGGTGAGG	0.348													43	43					0	0	0.003610	0	0
ZNF90	7643	broad.mit.edu	37	19	20216029	20216029	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:20216029G>A	uc002nor.2	+	3	270	c.131_splice	c.e3-1	p.G44_splice	ZNF90_uc002nos.1_Splice_Site|ZNF90_uc002not.1_Splice_Site	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90							Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TAATAAAACAGGTATTGTTGT	0.378													8	27					0	0	0.004482	0	0
ZNF486	90649	broad.mit.edu	37	19	20308543	20308543	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:20308543A>C	uc002nou.2	+	4	1081	c.1024A>C	c.(1024-1026)AAG>CAG	p.K342Q		NM_052852	NP_443084	Q96H40	ZN486_HUMAN	zinc finger protein 486	342	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TAAACATGAGAAGATTCATAC	0.398													10	17					0	0	0.000673	0	0
ZNF430	80264	broad.mit.edu	37	19	21240107	21240107	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:21240107C>T	uc002npj.2	+	5	1103	c.993C>T	c.(991-993)CAC>CAT	p.H331H	ZNF430_uc002npk.2_Silent_p.H330H	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	331	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						GGTCCTCACACCTTACTACAC	0.398													20	30					0	0	0.001523	0	0
ZNF208	7757	broad.mit.edu	37	19	22154225	22154225	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:22154225T>A	uc002nqp.2	-	6	3376	c.3227A>T	c.(3226-3228)AAA>ATA	p.K1076I	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CTTATAGGCTTTGCCACATTC	0.388													11	19					0	0	0.001368	0	0
ZNF208	7757	broad.mit.edu	37	19	22157451	22157451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:22157451C>T	uc002nqp.2	-	4	534	c.385G>A	c.(385-387)GGT>AGT	p.G129S	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTATTATAACCTTCTTTGTGC	0.323													61	92					0	0	0.003610	0	0
ZNF208	7757	broad.mit.edu	37	19	22170085	22170085	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:22170085G>A	uc002nqp.2	-	3	308	c.159C>T	c.(157-159)ATC>ATT	p.I53I	ZNF208_uc002nqo.1_Silent_p.I53I|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CCAGAAAAATGATCAGGTCTG	0.403													27	46					0	0	0.001271	0	0
ZNF98	148198	broad.mit.edu	37	19	22585674	22585674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:22585674G>A	uc002nqt.2	-	3	292	c.170C>T	c.(169-171)TCT>TTT	p.S57F		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	57	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				GTCTGGCTTAGAGGCAGCAAT	0.393													33	41					0	0	0.004289	0	0
ZNF99	7652	broad.mit.edu	37	19	22939185	22939185	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:22939185T>G	uc010xrh.1	-	8	2933	c.2933A>C	c.(2932-2934)GAG>GCG	p.E978A		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GTAGGGTTTCTCTCCAGAATG	0.363													9	25					0	0	0.000443	0	0
ZNF99	7652	broad.mit.edu	37	19	22941105	22941105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:22941105G>A	uc010xrh.1	-	5	1333	c.1333C>T	c.(1333-1335)CCC>TCC	p.P445S		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CATTTGTAGGGTTTCTTTCCA	0.343													19	33					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	19	23159597	23159597	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:23159597G>A	uc002nqy.1	-	3		c.553C>T			uc002nqz.1_Missense_Mutation_p.S117L					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		CATGCAAAATGATCTGACATA	0.318													12	19					0	0	0.001368	0	0
ZNF675	171392	broad.mit.edu	37	19	23837429	23837429	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:23837429T>G	uc002nri.2	-	4	488	c.306A>C	c.(304-306)AGA>AGC	p.R102S		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	102					bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ATTTTTCATATCTTCTCAGTG	0.323													37	45					0	0	0.003755	0	0
ZNF254	9534	broad.mit.edu	37	19	24310636	24310636	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:24310636T>A	uc002nru.2	+	4	1968	c.1834T>A	c.(1834-1836)TTC>ATC	p.F612I	ZNF254_uc010xrk.1_Missense_Mutation_p.F527I	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	612	C2H2-type 15.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				CAAAGCATTTTTCTGGTCCTC	0.383													29	28					0	0	0.001271	0	0
LOC100101266	100101266	broad.mit.edu	37	19	24345542	24345542	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:24345542G>A	uc010edb.1	-	1		c.708C>T				NR_003603				Homo sapiens hepatitis A virus cellular receptor 1 pseudogene (LOC100101266), non-coding RNA.												0						AGAGTGCAATGGTGAGCTGGT	0.468													90	141					0	0	0.003610	0	0
ZNF536	9745	broad.mit.edu	37	19	30934982	30934982	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:30934982G>A	uc002nsu.1	+	2	651	c.513G>A	c.(511-513)GGG>GGA	p.G171G	ZNF536_uc010edd.1_Silent_p.G171G	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	171	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CGCAGAAGGGGAACCTCAAGA	0.657													15	18					0	0	0.003163	0	0
ZNF536	9745	broad.mit.edu	37	19	30936197	30936197	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:30936197G>A	uc002nsu.1	+	2	1866	c.1728G>A	c.(1726-1728)CAG>CAA	p.Q576Q	ZNF536_uc010edd.1_Silent_p.Q576Q	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	576					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCTCCAAGCAGAAAATGCCTG	0.522													28	39					0	0	0.004656	0	0
ZNF536	9745	broad.mit.edu	37	19	31039197	31039197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:31039197C>T	uc002nsu.1	+	4	2809	c.2671C>T	c.(2671-2673)CCT>TCT	p.P891S	ZNF536_uc010edd.1_Missense_Mutation_p.P891S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	891					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CACTGACCTTCCTTCCAAAAG	0.537													40	57					0	0	0.001706	0	0
ZNF536	9745	broad.mit.edu	37	19	31040052	31040052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:31040052G>A	uc002nsu.1	+	4	3664	c.3526G>A	c.(3526-3528)GAG>AAG	p.E1176K	ZNF536_uc010edd.1_Missense_Mutation_p.E1176K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1176					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CTCCAAGGGGGAGAACAACGA	0.542													32	33					0	0	0.004878	0	0
CHST8	64377	broad.mit.edu	37	19	34263248	34263248	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:34263248C>T	uc002nus.3	+	5	1060	c.555C>T	c.(553-555)TTC>TTT	p.F185F	CHST8_uc002nut.3_Silent_p.F185F|CHST8_uc002nuu.2_Silent_p.F185F	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	185	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					CCCGTATCTTCGTGGAGGACC	0.706													15	16					0	0	0.004007	0	0
KIAA0355	9710	broad.mit.edu	37	19	34833098	34833098	+	Silent	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:34833098T>G	uc002nvd.3	+	10	3118	c.2259T>G	c.(2257-2259)CCT>CCG	p.P753P		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	753										ovary(1)	1	Esophageal squamous(110;0.162)					CTCGGGCACCTGGGAAATGGG	0.592													58	78					0	0	0.003610	0	0
MAG	4099	broad.mit.edu	37	19	35786590	35786590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:35786590C>T	uc002nyy.1	+	4	270	c.121C>T	c.(121-123)CCC>TCC	p.P41S	MAG_uc002nyx.1_Missense_Mutation_p.P41S|MAG_uc010eds.1_Missense_Mutation_p.P16S|MAG_uc002nyz.1_Missense_Mutation_p.P41S	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	41	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			CGTCTCCATCCCCTGCCGCTT	0.647													24	21					0	0	0.004656	0	0
MAG	4099	broad.mit.edu	37	19	35801493	35801493	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:35801493C>T	uc002nyy.1	+	9	1712	c.1563C>T	c.(1561-1563)GTC>GTT	p.V521V	MAG_uc002nyx.1_Silent_p.V521V|MAG_uc010eds.1_Silent_p.V496V|MAG_uc002nyz.1_Silent_p.V521V	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	521	Helical; (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GCGCCGTGGTCGCCTTTGCCA	0.592													21	29					0	0	0.001512	0	0
CD22	933	broad.mit.edu	37	19	35832744	35832745	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:35832744_35832745CC>TT	uc010edt.2	+	9	1988_1989	c.1911_1912CC>TT	c.(1909-1914)CTCCCC>CTTTCC	p.P638S	CD22_uc010xst.1_Missense_Mutation_p.P466S|CD22_uc010edu.2_Missense_Mutation_p.P550S|CD22_uc010edv.2_Missense_Mutation_p.P638S|CD22_uc002nzb.3_Missense_Mutation_p.P461S|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	638	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	ACCAAAGCCTCCCCTACCACAG	0.604													13	22					0	0	0.004672	0	0
FFAR1	2864	broad.mit.edu	37	19	35842813	35842813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:35842813C>T	uc002nzc.2	+	1	369	c.359C>T	c.(358-360)CCG>CTG	p.P120L		NM_005303	NP_005294	O14842	FFAR1_HUMAN	free fatty acid receptor 1	120	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;4.58e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.67e-19)|all cancers(14;2.01e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)		Icosapent(DB00159)	TTCCGGAGGCCGTGCTATTCC	0.672													19	30					0	0	0.001882	0	0
FFAR3	2865	broad.mit.edu	37	19	35850303	35850303	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:35850303C>T	uc002nzd.2	+	2	586	c.511C>T	c.(511-513)CTG>TTG	p.L171L	FFAR3_uc010xsu.1_Intron	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	171	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			GACCTGCTACCTGGAGTTCCG	0.602													22	27					0	0	0.002780	0	0
SBSN	374897	broad.mit.edu	37	19	36018994	36018994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36018994C>T	uc002oae.1	-	1	260	c.190G>A	c.(190-192)GAA>AAA	p.E64K	SBSN_uc002oad.1_Missense_Mutation_p.E64K	NM_198538	NP_940940	Q6UWP8	SBSN_HUMAN	suprabasin isoform 2 precursor	64	Ala/Gly/His-rich.					extracellular region				ovary(1)	1	all_lung(56;1.62e-08)|Lung NSC(56;2.47e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			TTCTCCACTTCCCTTCCGGCA	0.567													51	77					0	0	0.003610	0	0
ATP4A	495	broad.mit.edu	37	19	36046215	36046215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36046215C>T	uc002oal.1	-	15	2208	c.2179G>A	c.(2179-2181)GGG>AGG	p.G727R	ATP4A_uc010eee.1_5'UTR	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	727	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	ACACCATCCCCCGTGACGGCC	0.622													16	22					0	0	0.004990	0	0
MLL4	9757	broad.mit.edu	37	19	36214803	36214803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36214803C>T	uc010eei.2	+	9	3229	c.3229C>T	c.(3229-3231)CGG>TGG	p.R1077W		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1077					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAAGTCAGCTCGGCGCTGCGT	0.721													7	10					0	0	0.001984	0	0
MLL4	9757	broad.mit.edu	37	19	36227621	36227621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36227621C>T	uc010eei.2	+	32	7190	c.7190C>T	c.(7189-7191)CCA>CTA	p.P2397L		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2397					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GAAGAGCCTCCATCCCCAGAT	0.582													13	20					0	0	0.001855	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36268736	36268736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36268736C>T	uc002obr.1	+	3	200	c.115C>T	c.(115-117)CCT>TCT	p.P39S	ARHGAP33_uc002obs.1_Missense_Mutation_p.P39S|ARHGAP33_uc002obt.1_5'UTR|ARHGAP33_uc010eek.1_Missense_Mutation_p.P57S	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	39					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GCTCTCAGCTCCTCGAGGCCC	0.607													30	59					0	0	0.001512	0	0
NPHS1	4868	broad.mit.edu	37	19	36339218	36339218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36339218C>T	uc002oby.2	-	10	1252	c.1252G>A	c.(1252-1254)GAG>AAG	p.E418K		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	418	Ig-like C2-type 4.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTGAAGGCCTCACATGTGAGG	0.592													35	28					0	0	0.003755	0	0
KIRREL2	84063	broad.mit.edu	37	19	36351534	36351534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36351534G>A	uc002ocb.3	+	7	1105	c.893G>A	c.(892-894)GGT>GAT	p.G298D	KIRREL2_uc002obz.3_Missense_Mutation_p.G298D|KIRREL2_uc002oca.3_Missense_Mutation_p.G248D|KIRREL2_uc002occ.3_Missense_Mutation_p.G245D|KIRREL2_uc002ocd.3_Missense_Mutation_p.G295D	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	298	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AACGCCGTGGGTAGCGCCAAC	0.672													26	54					0	0	0.001786	0	0
CLIP3	25999	broad.mit.edu	37	19	36509891	36509891	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36509891C>T	uc010eeq.1	-	8	1374	c.1092G>A	c.(1090-1092)GTG>GTA	p.V364V	uc002ocy.2_Intron|CLIP3_uc002ocz.1_Silent_p.V364V	NM_015526	NP_056341	Q96DZ5	CLIP3_HUMAN	CAP-GLY domain containing linker protein 3	364					chaperone-mediated protein transport|fat cell differentiation|membrane biogenesis|negative regulation of microtubule polymerization|peptidyl-L-cysteine S-palmitoylation|positive regulation of apoptosis|positive regulation of endocytosis|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose transport|positive regulation of protein phosphorylation	early endosome membrane|Golgi stack|membrane raft|microsome|plasma membrane|recycling endosome membrane|trans-Golgi network membrane	ganglioside binding|microtubule binding			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GGGGTGCGTCCACTGCCTTGG	0.627													20	30					0	0	0.001061	0	0
WDR62	284403	broad.mit.edu	37	19	36591688	36591688	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36591688C>T	uc002odc.2	+	23	2869	c.2778C>T	c.(2776-2778)TCC>TCT	p.S926S	WDR62_uc002odd.2_Silent_p.S926S	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	926					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GGCACCCCTCCTTCCTGCCCC	0.612													24	36					0	0	0.004656	0	0
ZFP14	57677	broad.mit.edu	37	19	36831947	36831947	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:36831947A>G	uc002odx.1	-	4	874	c.781T>C	c.(781-783)TGT>CGT	p.C261R	ZFP14_uc010xtd.1_Missense_Mutation_p.C262R|ZFP14_uc010eex.1_Missense_Mutation_p.C261R	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	261	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					GCCTTTCCACATTCCTTACAT	0.433													21	38					0	0	0.001882	0	0
ZNF585A	199704	broad.mit.edu	37	19	37644247	37644247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:37644247G>A	uc002ofo.1	-	5	785	c.554C>T	c.(553-555)CCC>CTC	p.P185L	ZNF585A_uc002ofm.1_Missense_Mutation_p.P130L|ZNF585A_uc002ofn.1_Missense_Mutation_p.P130L	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	185					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCATTTAAAGGGTTTCTCTCT	0.403													42	58					0	0	0.001951	0	0
ZNF527	84503	broad.mit.edu	37	19	37879669	37879669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:37879669C>T	uc010efk.1	+	5	829	c.718C>T	c.(718-720)CCT>TCT	p.P240S	ZNF527_uc002ogf.3_Missense_Mutation_p.P208S|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	240					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TATAGGAATTCCTCCTGGGGA	0.343													32	66					0	0	0.002445	0	0
ZNF569	148266	broad.mit.edu	37	19	37904621	37904621	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:37904621G>A	uc002ogi.2	-	6	1497	c.939C>T	c.(937-939)CTC>CTT	p.L313L	ZNF569_uc002ogh.2_Silent_p.L154L|ZNF569_uc002ogj.2_Silent_p.L337L	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	313	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GATGTGCAATGAGGCTTTGCT	0.388													66	91					0	0	0.003610	0	0
ZNF571	51276	broad.mit.edu	37	19	38056933	38056933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:38056933G>A	uc002ogt.2	-	4	498	c.397C>T	c.(397-399)CCT>TCT	p.P133S	uc002ogm.2_RNA|uc002ogn.2_RNA|ZNF540_uc002ogo.2_RNA|ZNF540_uc002ogp.2_Intron|ZNF540_uc002ogq.2_Intron|ZNF571_uc002ogr.1_Intron|uc002ogs.1_5'Flank|ZNF571_uc010efp.2_Missense_Mutation_p.P133S	NM_016536	NP_057620	Q7Z3V5	ZN571_HUMAN	zinc finger protein 571	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCCTTGGTAGGAATTATCCGA	0.368													52	49					0	0	0.003610	0	0
RASGRP4	115727	broad.mit.edu	37	19	38911593	38911593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:38911593C>T	uc002oir.2	-	4	546	c.332G>A	c.(331-333)GGG>GAG	p.G111E	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.G111E|RASGRP4_uc010xub.1_Missense_Mutation_p.G111E|RASGRP4_uc010xuc.1_Missense_Mutation_p.G111E|RASGRP4_uc010xud.1_Missense_Mutation_p.G111E|RASGRP4_uc010xue.1_Missense_Mutation_p.G111E|RASGRP4_uc010egb.2_Missense_Mutation_p.G111E	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	111	N-terminal Ras-GEF.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CTGGGTGTCCCCTGTGGCCTT	0.587													30	40					0	0	0.002096	0	0
RYR1	6261	broad.mit.edu	37	19	38991498	38991498	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:38991498C>T	uc002oit.2	+	47	7612	c.7482C>T	c.(7480-7482)TTC>TTT	p.F2494F	RYR1_uc002oiu.2_Silent_p.F2494F|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2494	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CAGCATCCTTCGTGCCGGACC	0.637													11	19					0	0	0.001368	0	0
RYR1	6261	broad.mit.edu	37	19	39016076	39016076	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:39016076C>T	uc002oit.2	+	71	10690	c.10560C>T	c.(10558-10560)ATC>ATT	p.I3520I	RYR1_uc002oiu.2_Silent_p.I3515I|RYR1_uc002oiv.1_Silent_p.I435I|RYR1_uc010xuf.1_Silent_p.I440I	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3520					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TGCTGCCCATCGGCCTGAATA	0.632													17	29					0	0	0.001216	0	0
RYR1	6261	broad.mit.edu	37	19	39025971	39025971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:39025971C>T	uc002oit.2	+	81	11585	c.11455C>T	c.(11455-11457)CTT>TTT	p.L3819F	RYR1_uc002oiu.2_Missense_Mutation_p.L3814F|RYR1_uc002oiv.1_Missense_Mutation_p.L734F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3819					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCTGGATTATCTTAAGGACAA	0.498													33	30					0	0	0.005524	0	0
RYR1	6261	broad.mit.edu	37	19	39034006	39034006	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:39034006G>A	uc002oit.2	+	85	11839	c.11709G>A	c.(11707-11709)CGG>CGA	p.R3903R	RYR1_uc002oiu.2_Silent_p.R3898R|RYR1_uc002oiv.1_Silent_p.R812R	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3903					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACTACCTACGGACACAGACAG	0.468													41	52					0	0	0.003610	0	0
RYR1	6261	broad.mit.edu	37	19	39039042	39039042	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:39039042C>T	uc002oit.2	+	89	12394	c.12264C>T	c.(12262-12264)TCC>TCT	p.S4088S	RYR1_uc002oiu.2_Silent_p.S4083S|RYR1_uc002oiv.1_Silent_p.S997S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4088					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCCTCATCTCCAAGAAGGACT	0.423													23	45					0	0	0.001061	0	0
RYR1	6261	broad.mit.edu	37	19	39062779	39062779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:39062779G>A	uc002oit.2	+	95	13997	c.13867G>A	c.(13867-13869)GAT>AAT	p.D4623N	RYR1_uc002oiu.2_Missense_Mutation_p.D4618N	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4623					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGCAGAGGGCGATGAGGATGA	0.617													34	71					0	0	0.005524	0	0
RYR1	6261	broad.mit.edu	37	19	39063864	39063864	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:39063864G>A	uc002oit.2	+	96	14176	c.14046G>A	c.(14044-14046)CTG>CTA	p.L4682L	RYR1_uc002oiu.2_Silent_p.L4677L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4682					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCCGGAAGCTGGAGTTTGATG	0.617													18	16					0	0	0.000743	0	0
HNRNPL	3191	broad.mit.edu	37	19	39338030	39338030	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:39338030G>A	uc010xul.1	-	2	323	c.312C>T	c.(310-312)GTC>GTT	p.V104V	HNRNPL_uc010xum.1_5'UTR	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	104	RRM 1.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			CCCTGATGTGGACAACTGGGG	0.532													18	36					0	0	0.000958	0	0
IL29	282618	broad.mit.edu	37	19	39788685	39788685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:39788685G>A	uc002okv.2	+	3	428	c.331G>A	c.(331-333)GAG>AAG	p.E111K		NM_172140	NP_742152	Q8IU54	IL29_HUMAN	interleukin 29 precursor	111					defense response to virus|negative regulation of cell proliferation|negative regulation of interleukin-13 production|negative regulation of interleukin-5 production|negative regulation of memory T cell differentiation|negative regulation of transcription, DNA-dependent|negative regulation of type 2 immune response|positive regulation of immune response|positive regulation of interferon-gamma production|positive regulation of MHC class I biosynthetic process|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of STAT protein	extracellular space|interleukin-28 receptor complex	cytokine activity|interleukin-28 receptor binding				0	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CCCAGCCCTGGAGGACGTCCT	0.672													20	23					0	0	0.001523	0	0
FCGBP	8857	broad.mit.edu	37	19	40363038	40363038	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:40363038A>G	uc002omp.3	-	32	15040	c.15032T>C	c.(15031-15033)TTC>TCC	p.F5011S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5011	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGCAGCCCCGAAGGTCTCCAC	0.647													10	9					0	0	0.000673	0	0
PSMC4	5704	broad.mit.edu	37	19	40480235	40480235	+	Silent	SNP	C	T	T	rs138214626		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:40480235C>T	uc002omq.2	+	4	394	c.357C>T	c.(355-357)ATC>ATT	p.I119I	PSMC4_uc002omr.2_Silent_p.I88I	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	119					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAGCACCATCGATCGGGAGC	0.597													11	32					0	0	0.001855	0	0
SPTBN4	57731	broad.mit.edu	37	19	40978578	40978578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:40978578C>T	uc002ony.2	+	2	136	c.50C>T	c.(49-51)CCT>CTT	p.P17L	SPTBN4_uc002onx.2_Missense_Mutation_p.P17L|SPTBN4_uc002onz.2_Missense_Mutation_p.P17L	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	17	Actin-binding.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGCCTGCTCCTAACAACAAC	0.542													9	15					0	0	0.001368	0	0
CYP2A6	1548	broad.mit.edu	37	19	41355868	41355868	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:41355868G>A	uc002opl.3	-	2	219	c.198C>T	c.(196-198)GGC>GGT	p.G66G	CYP2A6_uc010ehe.1_Intron|CYP2A6_uc010ehf.1_RNA	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	66					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	TGAACACGGGGCCATAGCGCT	0.617													23	29					0	0	0.003755	0	0
CEACAM7	1087	broad.mit.edu	37	19	42190993	42190993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:42190993G>A	uc002ori.1	-	2	226	c.224C>T	c.(223-225)GCC>GTC	p.A75V	CEACAM7_uc010ehx.2_Missense_Mutation_p.A75V|CEACAM7_uc010ehy.1_Missense_Mutation_p.A75V	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	75	Ig-like V-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		TCGATAGTTGGCATGCACCCT	0.458													53	100					0	0	0.003610	0	0
LYPD4	147719	broad.mit.edu	37	19	42342257	42342257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:42342257G>A	uc002orp.1	-	4	1274	c.290C>T	c.(289-291)TCC>TTC	p.S97F	LYPD4_uc002orq.1_Missense_Mutation_p.S62F	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	97						anchored to membrane|plasma membrane				ovary(1)	1						TCCGGGTGGGGAAACAAGGTA	0.542													20	35					0	0	0.002299	0	0
ATP1A3	478	broad.mit.edu	37	19	42479820	42479820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:42479820C>T	uc002osg.2	-	16	2378	c.2224G>A	c.(2224-2226)GAC>AAC	p.D742N	ATP1A3_uc010xwf.1_Missense_Mutation_p.D753N|ATP1A3_uc010xwg.1_Missense_Mutation_p.D712N|ATP1A3_uc010xwh.1_Missense_Mutation_p.D755N|ATP1A3_uc002osh.2_Missense_Mutation_p.D742N	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	742	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						AAGTTGTCGTCCAGCAGGATC	0.622													21	32					0	0	0.002299	0	0
ZNF574	64763	broad.mit.edu	37	19	42583793	42583793	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:42583793C>T	uc002osm.3	+	2	1204	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	ZNF574_uc002osk.3_Silent_p.F435F	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	345	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				GTCGTGTCTTCCCTAGCCCTT	0.612													28	39					0	0	0.001061	0	0
PSG3	5671	broad.mit.edu	37	19	43243228	43243228	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43243228G>A	uc002oue.2	-	2	210	c.78C>T	c.(76-78)AAC>AAT	p.N26N	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.N48N	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	26					defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGTTCCAGAAGTTTAAAAGTA	0.488													75	27					0	0	0.003610	0	0
PSG3	5671	broad.mit.edu	37	19	43244533	43244533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43244533C>T	uc002oue.2	-	1	136	c.4G>A	c.(4-6)GGG>AGG	p.G2R	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.G24R	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	2					defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GAGAGGGGCCCCATGGTCTCT	0.602													50	100					0	0	0.003610	0	0
PSG8	440533	broad.mit.edu	37	19	43262217	43262217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43262217C>T	uc002ouo.2	-	3	744	c.646G>A	c.(646-648)GAA>AAA	p.E216K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Missense_Mutation_p.E55K|PSG8_uc002ouh.2_Missense_Mutation_p.E216K|PSG8_uc010ein.2_Missense_Mutation_p.E94K|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Missense_Mutation_p.E55K|PSG8_uc002oul.3_Missense_Mutation_p.E216K|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	216	Ig-like C2-type 1.					extracellular region					0		Prostate(69;0.00899)				ATTTCACATTCATAGGGTCCT	0.512													83	120					0	0	0.003610	0	0
PSG8	440533	broad.mit.edu	37	19	43269714	43269714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43269714G>A	uc002ouo.2	-	1	118	c.20C>T	c.(19-21)CCT>CTT	p.P7L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc002oui.2_5'UTR|PSG8_uc002ouh.2_Missense_Mutation_p.P7L|PSG8_uc010ein.2_Missense_Mutation_p.P7L|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Intron|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	7						extracellular region					0		Prostate(69;0.00899)				TGTGCAGGGAGGGGCTGAGAG	0.597													41	53					0	0	0.003610	0	0
PSG1	5669	broad.mit.edu	37	19	43376027	43376028	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43376027_43376028TC>AT	uc002ovb.2	-	3	738_739	c.600_601GA>AT	c.(598-603)AGGACC>AGATCC	p.T201S	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.T201S|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.T201S|PSG1_uc010eio.1_Missense_Mutation_p.T201S|PSG1_uc002oux.1_Missense_Mutation_p.T130S|PSG1_uc002ouy.1_Missense_Mutation_p.T201S|PSG1_uc002ouz.1_Missense_Mutation_p.T201S|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Missense_Mutation_p.T201S	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	201	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				AGAAAGAGGGTCCTGTTGGTTT	0.52													98	139					0	0	0.004672	0	0
PSG1	5669	broad.mit.edu	37	19	43382318	43382318	+	Silent	SNP	G	A	A	rs139949881		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43382318G>A	uc002ovb.2	-	2	315	c.177C>T	c.(175-177)CCC>CCT	p.P59P	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.P59P|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.P59P|PSG1_uc010eio.1_Silent_p.P59P|PSG1_uc002oux.1_5'UTR|PSG1_uc002ouy.1_Silent_p.P59P|PSG1_uc002ouz.1_Silent_p.P59P|PSG1_uc002ova.1_Silent_p.P59P|PSG1_uc002ovc.2_Silent_p.P59P|PSG1_uc002ovd.1_Silent_p.P59P	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	59	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TAAGATTCTGGGGCAAATTGT	0.463													91	99					0	0	0.003610	0	0
PSG1	5669	broad.mit.edu	37	19	43382358	43382358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43382358G>A	uc002ovb.2	-	2	275	c.137C>T	c.(136-138)TCC>TTC	p.S46F	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.S46F|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.S46F|PSG1_uc010eio.1_Missense_Mutation_p.S46F|PSG1_uc002oux.1_5'UTR|PSG1_uc002ouy.1_Missense_Mutation_p.S46F|PSG1_uc002ouz.1_Missense_Mutation_p.S46F|PSG1_uc002ova.1_Missense_Mutation_p.S46F|PSG1_uc002ovc.2_Missense_Mutation_p.S46F|PSG1_uc002ovd.1_Missense_Mutation_p.S46F	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	46	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CTTCCCCTCGGAAACTTTGGT	0.478													75	101					0	0	0.003610	0	0
PSG11	5680	broad.mit.edu	37	19	43523025	43523025	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43523025G>A	uc002ovm.1	-	3	713	c.606C>T	c.(604-606)CTC>CTT	p.L202L	PSG11_uc002ouw.2_Silent_p.L208L|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.L208L|PSG11_uc002ovn.1_Silent_p.L208L|PSG11_uc002ovo.1_Silent_p.L80L|PSG11_uc002ovp.1_Silent_p.L80L	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	202	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CAAATAGAAAGAGGGTCCTGT	0.507													127	160					0	0	0.003610	0	0
PSG2	5670	broad.mit.edu	37	19	43576076	43576076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43576076G>A	uc002ovr.2	-	4	833	c.740C>T	c.(739-741)TCA>TTA	p.S247L	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.S247L|PSG2_uc010eiq.1_Missense_Mutation_p.S247L|PSG2_uc002ovs.3_Missense_Mutation_p.S247L|PSG2_uc002ovt.3_Missense_Mutation_p.S247L	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	247	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				ATTGGTGTATGAAGGGTGAAT	0.483													51	89					0	0	0.003610	0	0
PSG2	5670	broad.mit.edu	37	19	43579757	43579757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43579757C>T	uc002ovr.2	-	3	551	c.458G>A	c.(457-459)AGC>AAC	p.S153N	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.S153N|PSG2_uc010eiq.1_Missense_Mutation_p.S153N|PSG2_uc002ovs.3_Missense_Mutation_p.S153N|PSG2_uc002ovt.3_Missense_Mutation_p.S153N	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	153	Ig-like C2-type 1.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				TAAGTTGCTGCTGGAGATGGA	0.507													75	80					0	0	0.003610	0	0
PSG4	5672	broad.mit.edu	37	19	43699171	43699171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43699171C>T	uc002ovy.2	-	4	1066	c.964G>A	c.(964-966)GAC>AAC	p.D322N	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.D229N|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	322	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GTGACTGGGTCACTGCGGATG	0.488													34	63					0	0	0.003271	0	0
TEX101	83639	broad.mit.edu	37	19	43922138	43922138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:43922138G>A	uc010xwo.1	+	5	695	c.500G>A	c.(499-501)GGA>GAA	p.G167E	TEX101_uc002owk.2_Missense_Mutation_p.G185E	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	167						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				TGCTATCAAGGAAAACTTGAG	0.473													37	38					0	0	0.004878	0	0
CADM4	199731	broad.mit.edu	37	19	44131342	44131342	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:44131342G>A	uc002oxc.1	-	3	389	c.340C>T	c.(340-342)CAG>TAG	p.Q114*		NM_145296	NP_660339	Q8NFZ8	CADM4_HUMAN	cell adhesion molecule 4 precursor	114	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane					0		Prostate(69;0.0199)				GTGGCAATCTGGTGGTGGGTG	0.502													37	34					0	0	0.002222	0	0
ZNF404	342908	broad.mit.edu	37	19	44378014	44378014	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:44378014G>T	uc002oxs.3	-	2	352	c.343C>A	c.(343-345)CTT>ATT	p.L115I		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TGTAGAGGAAGGGATTTATGT	0.338													8	209					0.00307968	0.00528618	0.003080	1	0
ZNF230	7773	broad.mit.edu	37	19	44514558	44514558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:44514558C>T	uc002oyb.1	+	5	618	c.367C>T	c.(367-369)CCC>TCC	p.P123S		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	123	KRNB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				AGGTGATGTCCCCTCCCAGGT	0.438													30	30					0	0	0.002445	0	0
ZNF235	9310	broad.mit.edu	37	19	44792882	44792882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:44792882G>A	uc002oza.3	-	5	809	c.706C>T	c.(706-708)CAT>TAT	p.H236Y	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.H232Y|ZNF235_uc010xwx.1_Missense_Mutation_p.H150Y	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	236					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				CTATTGCTATGAACTTTATCT	0.358													34	39					0	0	0.002445	0	0
CEACAM20	125931	broad.mit.edu	37	19	45033510	45033510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:45033510C>T	uc010ejn.1	-	1	39	c.23G>A	c.(22-24)GGA>GAA	p.G8E	CEACAM20_uc010ejo.1_Missense_Mutation_p.G8E|CEACAM20_uc010ejp.1_Missense_Mutation_p.G8E|CEACAM20_uc010ejq.1_Missense_Mutation_p.G8E	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	8						integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				CCAGTGGTGTCCCCATGAGTC	0.567													88	127					0	0	0.003610	0	0
PVR	5817	broad.mit.edu	37	19	45153139	45153139	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:45153139C>T	uc002ozm.2	+	3	785	c.486C>T	c.(484-486)CCC>CCT	p.P162P	PVR_uc010ejs.2_Silent_p.P162P|PVR_uc010xxb.1_Silent_p.P162P|PVR_uc010xxc.1_Silent_p.P162P|PVR_uc002ozn.2_Silent_p.P107P	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	162	Extracellular (Potential).|Ig-like C2-type 1.				adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		AGCCAGTGCCCATGGCCCGCT	0.612													97	126					0	0	0.003610	0	0
CEACAM19	56971	broad.mit.edu	37	19	45182157	45182158	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:45182157_45182158CC>TT	uc002ozo.3	+	4	1088_1089	c.608_609CC>TT	c.(607-609)TCC>TTT	p.S203F	CEACAM19_uc002ozp.3_Missense_Mutation_p.S203F	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	203	Cytoplasmic (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				ggatctctgtccatcttgtgct	0.035													198	236					0	0	0.004672	0	0
CBLC	23624	broad.mit.edu	37	19	45281354	45281354	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:45281354C>T	uc002ozs.2	+	1	229	c.166C>T	c.(166-168)CGA>TGA	p.R56*	CBLC_uc010ejt.2_Nonsense_Mutation_p.R56*	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	56	4H.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				GCAGCTGCTTCGAGAGGTGGC	0.502			M		AML								53	55					0	0	0.003610	0	0
CLPTM1	1209	broad.mit.edu	37	19	45493792	45493792	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:45493792C>T	uc002pai.2	+	10	1287	c.1272C>T	c.(1270-1272)TTC>TTT	p.F424F	CLPTM1_uc010xxf.1_Silent_p.F322F|CLPTM1_uc010xxg.1_Silent_p.F410F	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	424	Helical; (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		TCAGCGTCTTCATTGGGGTCC	0.597													136	183					0	0	0.003610	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45716535	45716535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:45716535C>T	uc002pay.1	-	10	1063	c.1022G>A	c.(1021-1023)CGG>CAG	p.R341Q		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	341										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		TTCCAGGTCCCGGGCCACGGC	0.662													14	21					0	0	0.004990	0	0
CKM	1158	broad.mit.edu	37	19	45821172	45821172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:45821172C>T	uc002pbd.2	-	3	333	c.259G>A	c.(259-261)GAA>AAA	p.E87K		NM_001824	NP_001815	P06732	KCRM_HUMAN	muscle creatine kinase	87	Phosphagen kinase N-terminal.				creatine metabolic process	cytosol	ATP binding|creatine kinase activity			skin(1)	1		Ovarian(192;0.0336)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;2.29e-44)|Epithelial(262;1.05e-38)|GBM - Glioblastoma multiforme(486;3.56e-07)	Creatine(DB00148)	TCAAAGAGTTCCTTGAAAACT	0.562													22	28					0	0	0.002780	0	0
FOSB	2354	broad.mit.edu	37	19	45976161	45976161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:45976161C>T	uc002pbx.3	+	4	1500	c.908C>T	c.(907-909)TCG>TTG	p.S303L	ERCC1_uc002pbu.1_Intron|FOSB_uc010eke.2_Missense_Mutation_p.S228L|FOSB_uc002pby.3_Missense_Mutation_p.S267L|FOSB_uc010eka.1_3'UTR|FOSB_uc010ekb.1_3'UTR|FOSB_uc010ekc.1_3'UTR|FOSB_uc010ekf.2_Missense_Mutation_p.S264L|FOSB_uc010ekd.1_3'UTR|FOSB_uc010ekg.2_Missense_Mutation_p.S160L|FOSB_uc002pca.3_Missense_Mutation_p.S254L	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	303					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		TACACTTCTTCGTTTGTCCTC	0.617													34	58					0	0	0.002445	0	0
DMPK	1760	broad.mit.edu	37	19	46278228	46278228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:46278228G>A	uc002pdd.1	-	8	1785	c.1241C>T	c.(1240-1242)TCC>TTC	p.S414F	DMPK_uc010xxs.1_Missense_Mutation_p.S315F|DMPK_uc002pde.1_Missense_Mutation_p.S409F|DMPK_uc002pdf.1_Missense_Mutation_p.S404F|DMPK_uc002pdg.1_Missense_Mutation_p.S399F|DMPK_uc002pdh.1_Missense_Mutation_p.S399F|DMPK_uc002pdi.1_Missense_Mutation_p.S430F|DMPK_uc010xxt.1_Missense_Mutation_p.S399F	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	414	AGC-kinase C-terminal.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		GCAGGAGTAGGAGTAGCCCAC	0.622													11	17					0	0	0.001855	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307853	46307853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:46307853G>A	uc002pdm.2	-	3	1453	c.1310C>T	c.(1309-1311)CCA>CTA	p.P437L	RSPH6A_uc002pdl.2_Missense_Mutation_p.P173L	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	437						intracellular				ovary(1)|central_nervous_system(1)	2						CCGCGTCCATGGCAGGCCCGG	0.612													27	56					0	0	0.001271	0	0
FOXA3	3171	broad.mit.edu	37	19	46375805	46375805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:46375805C>T	uc002pdr.2	+	2	739	c.542C>T	c.(541-543)TCC>TTC	p.S181F		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	181	Fork-head.				brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		GTGGCGCGTTCCCCAGACAAG	0.582													12	25					0	0	0.004007	0	0
IGFL3	388555	broad.mit.edu	37	19	46627529	46627529	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:46627529A>G	uc002pea.1	-	2	100	c.75T>C	c.(73-75)ACT>ACC	p.T25T		NM_207393	NP_997276	Q6UXB1	IGFL3_HUMAN	IGF-like family member 3 precursor	25						extracellular region	protein binding				0		Ovarian(192;0.0175)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00473)|GBM - Glioblastoma multiforme(486;0.0149)|Epithelial(262;0.239)		CCTTACCTGTAGTTCCTTTTG	0.453													23	29					0	0	0.005443	0	0
HIF3A	64344	broad.mit.edu	37	19	46832684	46832684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:46832684C>T	uc002peh.2	+	12	1690	c.1661C>T	c.(1660-1662)CCT>CTT	p.P554L	HIF3A_uc002peg.3_Missense_Mutation_p.P554L|HIF3A_uc002pei.3_Missense_Mutation_p.P498L|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Missense_Mutation_p.P498L|HIF3A_uc010xxy.1_Missense_Mutation_p.P485L|HIF3A_uc002pel.2_Missense_Mutation_p.P552L|HIF3A_uc010xxz.1_Missense_Mutation_p.P503L	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	554	ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		TGCTCCAGCCCTTCCAGAGGG	0.647													6	8					0	0	0.001168	0	0
DACT3	147906	broad.mit.edu	37	19	47151937	47151937	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:47151937G>A	uc010ekq.2	-	4	1766	c.1692C>T	c.(1690-1692)TCC>TCT	p.S564S		NM_145056	NP_659493	Q96B18	DACT3_HUMAN	thymus expressed gene 3-like	564											0		Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000173)|all cancers(93;0.000464)|Epithelial(262;0.02)|GBM - Glioblastoma multiforme(486;0.0325)		CTGAGTCGCTGGAGGCAGAGC	0.751													16	22					0	0	0.004007	0	0
C5AR1	728	broad.mit.edu	37	19	47823763	47823764	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:47823763_47823764GG>AA	uc002pgj.1	+	2	778_779	c.729_730GG>AA	c.(727-732)GTGGTG>GTAATG	p.V244M		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	244	Helical; Name=6; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		CACTCAAGGTGGTGGTGGCAGT	0.574													22	37					0	0	0.004672	0	0
GPR77	27202	broad.mit.edu	37	19	47844952	47844952	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:47844952T>A	uc010ela.1	+	2	1114	c.896T>A	c.(895-897)CTC>CAC	p.L299H	GPR77_uc002pgk.1_Missense_Mutation_p.L299H	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	299	Cytoplasmic (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		AGGGCTCAACTCCGCCGGTCA	0.632													21	31					0	0	0.003330	0	0
DHX34	9704	broad.mit.edu	37	19	47885322	47885322	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:47885322C>T	uc010xyn.1	+	17	3725	c.3384C>T	c.(3382-3384)TTC>TTT	p.F1128F	DHX34_uc010xyo.1_Silent_p.F257F	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	1128						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		GGAAGGACTTCCTCTTTACAC	0.642													19	24					0	0	0.002299	0	0
EHD2	30846	broad.mit.edu	37	19	48220223	48220223	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:48220223G>A	uc002phj.3	+	2	604	c.354G>A	c.(352-354)CCG>CCA	p.P118P	EHD2_uc010xyu.1_Intron	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	118					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		TCGTGGACCCGGACAAGCCCT	0.597													17	37					0	0	0.000958	0	0
CABP5	56344	broad.mit.edu	37	19	48543927	48543927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:48543927C>T	uc002phu.1	-	3	298	c.173G>A	c.(172-174)AGG>AAG	p.R58K		NM_019855	NP_062829	Q9NP86	CABP5_HUMAN	calcium binding protein 5	58	EF-hand 1.				signal transduction	cytoplasm	calcium ion binding			skin(1)	1		all_cancers(25;1.86e-08)|all_lung(116;1.14e-06)|all_epithelial(76;1.16e-06)|Lung NSC(112;2.54e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;4.09e-05)|all cancers(93;0.000322)|Epithelial(262;0.01)|GBM - Glioblastoma multiforme(486;0.058)		ACCCATCGTCCTCATGAGATT	0.512													28	44					0	0	0.002445	0	0
LMTK3	114783	broad.mit.edu	37	19	49004630	49004630	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:49004630C>T	uc002pjk.2	-	10	998	c.998G>A	c.(997-999)TGG>TAG	p.W333*		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CAGTGGGATCCACAGGCGCTC	0.682													10	16					0	0	0.000673	0	0
LMTK3	114783	broad.mit.edu	37	19	49012212	49012212	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:49012212C>T	uc002pjk.2	-	6	540	c.540G>A	c.(538-540)GAG>GAA	p.E180E		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CGGAGAAAATCTCTCCCAGGA	0.657													24	32					0	0	0.003954	0	0
FUT2	2524	broad.mit.edu	37	19	49206744	49206744	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:49206744G>A	uc002pke.3	+	2	642	c.531G>A	c.(529-531)GAG>GAA	p.E177E	FUT2_uc010emc.2_Silent_p.E177E	NM_001097638	NP_001091107	Q10981	FUT2_HUMAN	fucosyltransferase 2	177	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	galactoside 2-alpha-L-fucosyltransferase activity			central_nervous_system(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.00011)|all cancers(93;0.000238)|GBM - Glioblastoma multiforme(486;0.0164)|Epithelial(262;0.017)		TGCGGGAGGAGGCCCAGAAGT	0.647													15	27					0	0	0.003163	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49362759	49362759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:49362759G>A	uc002pkx.2	-	7	1210	c.659C>T	c.(658-660)TCT>TTT	p.S220F	PLEKHA4_uc002pkw.1_5'Flank|PLEKHA4_uc010eml.2_Missense_Mutation_p.S220F	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	220	Pro-rich.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		CTGGAGTCCAGAGTGGAGGTC	0.632													14	18					0	0	0.004007	0	0
PPP1R15A	23645	broad.mit.edu	37	19	49376560	49376560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:49376560C>T	uc002pky.3	+	2	339	c.70C>T	c.(70-72)CCA>TCA	p.P24S		NM_014330	NP_055145	O75807	PR15A_HUMAN	protein phosphatase 1, regulatory subunit 15A	24	Required for localization in the endoplasmic reticulum.				apoptosis|cell cycle arrest|regulation of translation|response to DNA damage stimulus	endoplasmic reticulum	protein binding			lung(1)	1		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000244)|all cancers(93;0.000694)|GBM - Glioblastoma multiforme(486;0.0222)|Epithelial(262;0.033)		CCTCCTGTCCCCAGTGATGGG	0.627													14	12					0	0	0.001855	0	0
TRPM4	54795	broad.mit.edu	37	19	49693490	49693490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:49693490G>A	uc002pmw.2	+	15	2117	c.2045G>A	c.(2044-2046)GGA>GAA	p.G682E	TRPM4_uc010emu.2_Missense_Mutation_p.G682E|TRPM4_uc010yak.1_Missense_Mutation_p.G146E|TRPM4_uc002pmx.2_Missense_Mutation_p.G508E|TRPM4_uc010emv.2_Missense_Mutation_p.G567E|TRPM4_uc010yal.1_Missense_Mutation_p.G328E|TRPM4_uc002pmy.2_Missense_Mutation_p.G24E	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	682	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		AAGTGGTGGGGAGATATGGCC	0.587													56	88					0	0	0.003610	0	0
FLT3LG	2323	broad.mit.edu	37	19	49982275	49982276	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:49982275_49982276CC>TT	uc010yau.1	+	6	542_543	c.452_453CC>TT	c.(451-453)TCC>TTT	p.S151F	FLT3LG_uc002pnv.2_Missense_Mutation_p.S69F|FLT3LG_uc002pnw.2_Missense_Mutation_p.S69F|FLT3LG_uc002pnu.2_Missense_Mutation_p.S151F|FLT3LG_uc002pnx.2_Missense_Mutation_p.S151F|FLT3LG_uc010yav.1_Missense_Mutation_p.S69F	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	151	Extracellular (Potential).				positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CAGAACTTCTCCCGGTGCCTGG	0.639													6	10					0	0	0.004672	0	0
PRR12	57479	broad.mit.edu	37	19	50103156	50103156	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:50103156C>A	uc002poo.3	+	5	4306	c.4306C>A	c.(4306-4308)CTT>ATT	p.L1436I		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	615	Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GCCACCCCCTCTTCCGGGGCT	0.617													8	20					0.000274275	0.000471926	0.004482	1	0
BCL2L12	83596	broad.mit.edu	37	19	50172182	50172182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:50172182C>T	uc002ppa.2	+	4	1259	c.577C>T	c.(577-579)CCG>TCG	p.P193S	BCL2L12_uc002ppb.2_Missense_Mutation_p.P192S	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	193					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		GCTGAAATCTCCGCCCAGCCC	0.582													26	23					0	0	0.003954	0	0
PRMT1	3276	broad.mit.edu	37	19	50187245	50187245	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:50187245C>T	uc010enf.1	+	6	516	c.474C>T	c.(472-474)ATC>ATT	p.I158I	PRMT1_uc002ppc.1_RNA|PRMT1_uc002ppd.2_Silent_p.I134I|PRMT1_uc002ppe.2_Silent_p.I140I|PRMT1_uc002ppf.2_RNA|PRMT1_uc002ppg.2_Silent_p.I105I|PRMT1_uc010yba.1_RNA	NM_001536	NP_001527	Q8WUW5	Q8WUW5_HUMAN	HMT1 hnRNP methyltransferase-like 2 isoform 1	139						cytoplasm	protein methyltransferase activity			ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00103)|GBM - Glioblastoma multiforme(134;0.012)		AGGTGGACATCATCATCAGCG	0.632													15	30					0	0	0.002450	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50463542	50463542	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:50463542G>A	uc010ybh.1	-	3	688	c.597C>T	c.(595-597)TCC>TCT	p.S199S	SIGLEC11_uc010ybi.1_Silent_p.S199S	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	199	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		TTCTTCTAGGGGAGAGGGCAG	0.607													7	10					0	0	0.000673	0	0
LRRC4B	94030	broad.mit.edu	37	19	51021720	51021720	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51021720T>G	uc002pss.2	-	3	1387	c.1250A>C	c.(1249-1251)CAT>CCT	p.H417P		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	417	Extracellular (Potential).|Ig-like C2-type.					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		CGTGCCGTCATGCAGGACGGA	0.642													24	10					0	0	0.003954	0	0
SYT3	84258	broad.mit.edu	37	19	51135761	51135761	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51135761C>T	uc002pst.2	-	2	1090	c.456G>A	c.(454-456)GGG>GGA	p.G152G	SYT3_uc002psv.2_Silent_p.G152G|SYT3_uc010ycd.1_Silent_p.G152G	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	152	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		TGTCAGAACCCCCCAGGCTGC	0.657													6	6					0	0	0.001168	0	0
GPR32	2854	broad.mit.edu	37	19	51274295	51274295	+	Silent	SNP	C	T	T	rs143841096		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51274295C>T	uc010ycf.1	+	1	438	c.438C>T	c.(436-438)CCC>CCT	p.P146P		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	146	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TCCTCTACCCCGTCTGGGCCC	0.592													52	41					0	0	0.003610	0	0
KLK9	284366	broad.mit.edu	37	19	51506442	51506442	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51506442G>A	uc002pux.1	-	5	765	c.678C>T	c.(676-678)TCC>TCT	p.S226S	KLK9_uc002puw.1_RNA|KLK9_uc010eol.1_Silent_p.S197S|KLK8_uc002puq.1_5'Flank|KLK8_uc002pur.1_5'Flank|KLK8_uc002pus.1_5'Flank|KLK8_uc002put.1_5'Flank|KLK8_uc002puu.1_5'UTR|KLK9_uc002puv.1_RNA	NM_012315	NP_036447	Q9UKQ9	KLK9_HUMAN	kallikrein-related peptidase 9 precursor	226	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.0652)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		GCCGGGGTCTGGAGCAGGGCT	0.637													24	25					0	0	0.003954	0	0
KLK12	43849	broad.mit.edu	37	19	51535133	51535133	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51535133C>T	uc002pvg.1	-	3	576	c.456G>A	c.(454-456)CGG>CGA	p.R152R	KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Intron|KLK12_uc010ycr.1_Intron|KLK12_uc010ycs.1_Intron|KLK12_uc002pvh.1_Silent_p.R152R|KLK12_uc002pvi.1_Silent_p.R152R|KLK12_uc002pvj.1_Intron	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	152	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		GCCCCTTACTCCGTGGGTGGT	0.627													32	56					0	0	0.001287	0	0
KLK12	43849	broad.mit.edu	37	19	51535145	51535145	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51535145G>A	uc002pvg.1	-	3	564	c.444C>T	c.(442-444)ACC>ACT	p.T148T	KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Intron|KLK12_uc010ycr.1_Intron|KLK12_uc010ycs.1_Intron|KLK12_uc002pvh.1_Silent_p.T148T|KLK12_uc002pvi.1_Silent_p.T148T|KLK12_uc002pvj.1_Intron	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	148	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		GTGGGTGGTTGGTGATGCCCC	0.647													28	53					0	0	0.002445	0	0
CD33	945	broad.mit.edu	37	19	51729189	51729189	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51729189C>T	uc002pwa.2	+	3	589	c.549C>T	c.(547-549)GCC>GCT	p.A183A	CD33_uc010eos.1_Silent_p.A183A|CD33_uc010eot.1_Silent_p.A56A|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	183	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	TGTCAGCTGCCCCCACCTCCC	0.622													22	39					0	0	0.003330	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51918507	51918507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51918507C>T	uc002pwo.2	-	7	1874	c.1258G>A	c.(1258-1260)GAA>AAA	p.E420K	SIGLEC10_uc002pwp.2_Missense_Mutation_p.E362K|SIGLEC10_uc002pwq.2_Missense_Mutation_p.E362K|SIGLEC10_uc002pwr.2_Missense_Mutation_p.E420K|SIGLEC10_uc010ycy.1_Missense_Mutation_p.E330K|SIGLEC10_uc010ycz.1_Missense_Mutation_p.E372K|SIGLEC10_uc010eow.2_Missense_Mutation_p.E232K|SIGLEC10_uc002pws.1_Missense_Mutation_p.E256K	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	420	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		AACTCTCCTTCGTGCTCCACT	0.667													24	29					0	0	0.002780	0	0
CEACAM18	729767	broad.mit.edu	37	19	51983931	51983931	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:51983931C>T	uc002pwv.1	+	3	580	c.580C>T	c.(580-582)CTA>TTA	p.L194L		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	194						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GCTGGAGGTTCTAGGTGGGTT	0.418													15	18					0	0	0.003163	0	0
ZNF578	147660	broad.mit.edu	37	19	53014946	53014946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:53014946C>T	uc002pzp.3	+	6	1556	c.1312C>T	c.(1312-1314)CAT>TAT	p.H438Y		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	213	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		GGCTTTTATTCATCAGTCAAG	0.383													39	60					0	0	0.004878	0	0
ZNF808	388558	broad.mit.edu	37	19	53057053	53057053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:53057053C>T	uc010epq.1	+	5	1061	c.884C>T	c.(883-885)TCC>TTC	p.S295F	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	295	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TGTGGAAAGTCCTTCAGTTAC	0.408													59	92					0	0	0.003610	0	0
ZNF160	90338	broad.mit.edu	37	19	53571981	53571981	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:53571981A>T	uc010eqk.2	-	7	2222	c.1806T>A	c.(1804-1806)TTT>TTA	p.F602L	ZNF160_uc002qaq.3_Missense_Mutation_p.F602L|ZNF160_uc002qar.3_Missense_Mutation_p.F602L	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	602	C2H2-type 13.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		AACGATCACTAAAGGCTCTGC	0.408													43	62					0	0	0.002222	0	0
ZNF415	55786	broad.mit.edu	37	19	53619571	53619571	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:53619571G>A	uc002qax.2	-	4	418	c.69C>T	c.(67-69)CTC>CTT	p.L23L	ZNF415_uc002qat.2_Silent_p.L23L|ZNF415_uc002qaw.2_Missense_Mutation_p.S44F|ZNF415_uc010yds.1_Missense_Mutation_p.S44F|ZNF415_uc010ydt.1_Missense_Mutation_p.S44F|ZNF415_uc002qau.2_5'UTR|ZNF415_uc002qav.2_Silent_p.L23L|ZNF415_uc002qba.2_Intron|ZNF415_uc002qay.2_5'UTR|ZNF415_uc002qaz.2_Silent_p.L23L	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	23					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		CTCACCCAGGGAGACCAGGTT	0.473													58	73					0	0	0.003610	0	0
MIR527	574497	broad.mit.edu	37	19	54257349	54257349	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:54257349G>A	hsa-mir-527|MI0003179	+			c.78G>A			MIR516A1_hsa-mir-516a-1|MI0003180_5'Flank																	0						GTGAATTACGGTTTGAGAAAA	0.448													36	48					0	0	0.003271	0	0
NLRP12	91662	broad.mit.edu	37	19	54312892	54312892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:54312892C>T	uc002qch.3	-	3	2241	c.2021G>A	c.(2020-2022)GGG>GAG	p.G674E	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.G674E|NLRP12_uc002qcj.3_Missense_Mutation_p.G674E|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.G674E	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	674					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GCGGTCTTCCCCGTCCGCGCT	0.612													11	18					0	0	0.000978	0	0
MYADM	91663	broad.mit.edu	37	19	54376896	54376896	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:54376896T>A	uc002qcl.2	+	3	261	c.113T>A	c.(112-114)CTC>CAC	p.L38H	MYADM_uc002qcm.2_Missense_Mutation_p.L38H|MYADM_uc002qcn.2_Missense_Mutation_p.L38H|MYADM_uc002qco.2_Missense_Mutation_p.L38H|MYADM_uc002qcp.2_Missense_Mutation_p.L38H	NM_001020820	NP_001018656	Q96S97	MYADM_HUMAN	myeloid-associated differentiation marker	38	MARVEL 1.					integral to membrane				ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.0488)		CCCCTGGGTCTCCTTCGCCTG	0.662											OREG0003650	type=REGULATORY REGION|Gene=MYADM|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	12	14					0	0	0.001368	0	0
PRKCG	5582	broad.mit.edu	37	19	54394961	54394961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:54394961C>T	uc002qcq.1	+	6	845	c.563C>T	c.(562-564)CCC>CTC	p.P188L	PRKCG_uc010eqz.1_Missense_Mutation_p.P188L|PRKCG_uc010yef.1_Missense_Mutation_p.P188L|PRKCG_uc010yeg.1_Missense_Mutation_p.P188L|PRKCG_uc010yeh.1_Missense_Mutation_p.P75L	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	188	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CCTATGGACCCCAATGGTCTC	0.552													33	72					0	0	0.002522	0	0
PRKCG	5582	broad.mit.edu	37	19	54403565	54403565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:54403565G>A	uc002qcq.1	+	12	1642	c.1360G>A	c.(1360-1362)GAG>AAG	p.E454K	PRKCG_uc010yeg.1_Missense_Mutation_p.E454K|PRKCG_uc010yeh.1_Missense_Mutation_p.E341K	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	454	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CAAGTTTAAGGAGCCCCATGC	0.592													22	19					0	0	0.002299	0	0
CACNG7	59284	broad.mit.edu	37	19	54418665	54418665	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:54418665C>T	uc002qcr.1	+	3	345	c.330C>T	c.(328-330)CTC>CTT	p.L110L	CACNG7_uc010era.1_Silent_p.L110L	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	110	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		GCCTCTTCCTCGTGTTCACGG	0.607													17	20					0	0	0.004990	0	0
LILRA1	11024	broad.mit.edu	37	19	55107356	55107356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55107356C>T	uc002qgh.1	+	6	1096	c.914C>T	c.(913-915)TCC>TTC	p.S305F	LILRA2_uc010yfg.1_Missense_Mutation_p.S303F|LILRA1_uc010yfh.1_Missense_Mutation_p.S305F	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	305	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		AACCTCTCCTCCGAGTGGTCG	0.682													23	30					0	0	0.004656	0	0
LILRB4	11006	broad.mit.edu	37	19	55177322	55177322	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55177322C>A	uc002qgp.2	+	7	1176	c.814C>A	c.(814-816)CTC>ATC	p.L272I	LILRB4_uc002qgq.2_Missense_Mutation_p.L272I|LILRB4_uc002qgr.2_Missense_Mutation_p.L313I|LILRB4_uc010ert.2_Missense_Mutation_p.L313I|LILRB4_uc010eru.2_Missense_Mutation_p.L301I	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	272	Helical; (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CAtcctgcttctctccctcct	0.423													13	9					0.000151284	0.000260568	0.001855	1	0
LILRB4	11006	broad.mit.edu	37	19	55177872	55177872	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55177872C>T	uc002qgp.2	+	9	1335	c.973C>T	c.(973-975)CAG>TAG	p.Q325*	LILRB4_uc002qgq.2_Nonsense_Mutation_p.Q325*|LILRB4_uc002qgr.2_Nonsense_Mutation_p.Q366*|LILRB4_uc010ert.2_Nonsense_Mutation_p.Q366*|LILRB4_uc010eru.2_Nonsense_Mutation_p.Q354*	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	325	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		TGCTGACGTCCAGGGAGAAAA	0.587													12	28					0	0	0.001855	0	0
LILRP2	79166	broad.mit.edu	37	19	55221554	55221554	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55221554G>A	uc002qgs.1	+	1		c.1954G>A			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CTCCCACGGGGGCCAGTACAG	0.677													8	18					0	0	0.003080	0	0
KIR2DL3	3804	broad.mit.edu	37	19	55263828	55263828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55263828G>A	uc002qgv.2	+	8	901	c.883G>A	c.(883-885)GAA>AAA	p.E295K	KIR2DS4_uc010yfj.1_5'Flank|KIR2DL3_uc002qgx.2_Missense_Mutation_p.E295K|KIR2DL3_uc002qgy.2_Missense_Mutation_p.E197K|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_5'Flank	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	295	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		GGACTCTGATGAACAAGACCC	0.527													83	153					0	0	0.003610	0	0
KIR2DL4	3805	broad.mit.edu	37	19	55324584	55324584	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55324584C>T	uc010yfm.1	+	6	751	c.711C>T	c.(709-711)ATC>ATT	p.I237I	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Silent_p.I232I|KIR2DL4_uc002qhg.2_Intron|KIR2DL4_uc002qhi.2_Silent_p.I220I|KIR2DL4_uc002qhh.2_Intron|KIR2DL4_uc002qhj.2_Intron|KIR2DL4_uc002qhf.2_Intron|KIR2DL4_uc010esd.2_Intron|KIR2DL4_uc010ese.2_RNA	NM_002255	NP_002246	Q99706	KI2L4_HUMAN	killer cell immunoglobulin-like receptor, two	237	Extracellular (Potential).				cellular defense response|regulation of immune response	integral to plasma membrane	protein binding|transmembrane receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0192)		CTCCAGGTATCGCCAGACACC	0.458													39	5					0	0	0.001706	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55346533	55346533	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55346533G>A	uc002qhm.1	+	2	81	c.35_splice	c.e2-1	p.G12_splice	KIR2DS4_uc010yfj.1_Splice_Site_p.G5_splice|KIR2DS4_uc010yfk.1_Splice_Site|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Splice_Site_p.G12_splice|KIR2DS4_uc002qhn.1_5'Flank	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two							integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TTTCTTTCCAGGGTTCTTCTT	0.537													72	8					0	0	0.003610	0	0
NLRP7	199713	broad.mit.edu	37	19	55451437	55451437	+	Silent	SNP	G	A	A	rs140816006		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55451437G>A	uc002qih.3	-	4	826	c.750C>T	c.(748-750)TTC>TTT	p.F250F	NLRP7_uc002qig.3_Silent_p.F250F|NLRP7_uc002qii.3_Silent_p.F250F|NLRP7_uc010esk.2_Silent_p.F250F|NLRP7_uc010esl.2_Silent_p.F278F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	250	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CATCGACCACGAACAGGATTC	0.577													40	70					0	0	0.001706	0	0
NLRP2	55655	broad.mit.edu	37	19	55495086	55495086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55495086G>A	uc002qij.2	+	6	2106	c.2020G>A	c.(2020-2022)GAG>AAG	p.E674K	NLRP2_uc010yfp.1_Missense_Mutation_p.E651K|NLRP2_uc010esn.2_Missense_Mutation_p.E650K|NLRP2_uc010eso.2_Missense_Mutation_p.E671K|NLRP2_uc010esp.2_Missense_Mutation_p.E652K	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	674					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		ATCAGACGCCGAGGTTGAGAG	0.512													29	31					0	0	0.002445	0	0
RDH13	112724	broad.mit.edu	37	19	55568048	55568048	+	Nonsense_Mutation	SNP	G	A	A	rs147006931	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55568048G>A	uc002qio.3	-	3	498	c.313C>T	c.(313-315)CGA>TGA	p.R105*	RDH13_uc002qip.2_Nonsense_Mutation_p.R34*|RDH13_uc010yfq.1_RNA|RDH13_uc010esr.1_5'Flank	NM_001145971	NP_001139443	Q8NBN7	RDH13_HUMAN	retinol dehydrogenase 13 isoform 1	105							binding|oxidoreductase activity			large_intestine(1)|ovary(1)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(297;0.199)	GBM - Glioblastoma multiforme(193;0.0504)	Vitamin A(DB00162)	GCAAACTCTCGGATAGACTTG	0.572													14	31					0	0	0.002450	0	0
EPS8L1	54869	broad.mit.edu	37	19	55591171	55591171	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55591171G>A	uc002qis.3	+	5	335	c.231G>A	c.(229-231)CTG>CTA	p.L77L	EPS8L1_uc010ess.1_Silent_p.L59L|EPS8L1_uc010est.1_Silent_p.L77L|EPS8L1_uc010yfr.1_Silent_p.L13L|EPS8L1_uc010esu.1_RNA|EPS8L1_uc002qiu.2_5'Flank|EPS8L1_uc002qiv.2_5'Flank|EPS8L1_uc002qiw.2_5'Flank	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	77						cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		AGGAGATGCTGCTGCGAGTGT	0.547													12	15					0	0	0.001368	0	0
PTPRH	5794	broad.mit.edu	37	19	55707938	55707938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55707938C>T	uc002qjq.2	-	10	2282	c.2209G>A	c.(2209-2211)GGA>AGA	p.G737R	PTPRH_uc010esv.2_Missense_Mutation_p.G559R|PTPRH_uc002qjs.2_Missense_Mutation_p.G744R	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	737	Extracellular (Potential).|Fibronectin type-III 8.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		ACCTTCATTCCGTCCCAGATG	0.627													21	37					0	0	0.001523	0	0
PTPRH	5794	broad.mit.edu	37	19	55718304	55718304	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:55718304G>A	uc002qjq.2	-	3	178	c.105C>T	c.(103-105)AAC>AAT	p.N35N	PTPRH_uc010esv.2_Silent_p.N35N|PTPRH_uc002qjs.2_Silent_p.N42N	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	35	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		CCACTGTCAGGTTCCTCCCTG	0.572													20	28					0	0	0.002780	0	0
NLRP11	204801	broad.mit.edu	37	19	56312989	56312989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56312989G>A	uc010ygf.1	-	7	2831	c.2120C>T	c.(2119-2121)TCA>TTA	p.S707L	NLRP11_uc002qlz.2_Missense_Mutation_p.S554L|NLRP11_uc002qmb.2_Missense_Mutation_p.S608L|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	707							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ATGCAGAAGTGAAAACATATT	0.473													46	44					0	0	0.003610	0	0
NLRP4	147945	broad.mit.edu	37	19	56363517	56363517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56363517G>A	uc002qmd.3	+	2	493	c.71G>A	c.(70-72)AGG>AAG	p.R24K		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	24	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GAGGAGTTCAGGAAATTTAAA	0.433													88	85					0	0	0.003610	0	0
NLRP4	147945	broad.mit.edu	37	19	56369832	56369832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56369832G>A	uc002qmd.3	+	3	1495	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	NLRP4_uc002qmf.2_Missense_Mutation_p.G283E|NLRP4_uc010etf.2_Missense_Mutation_p.G189E	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	358	NACHT.						ATP binding	p.G358R(1)		ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ATGCAGAAAGGAAAAGACCTG	0.512													25	39					0	0	0.003954	0	0
NLRP4	147945	broad.mit.edu	37	19	56382295	56382295	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56382295G>A	uc002qmd.3	+	7	2879	c.2457G>A	c.(2455-2457)CTG>CTA	p.L819L	NLRP4_uc002qmf.2_Silent_p.L744L|NLRP4_uc010etf.2_Silent_p.L594L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	819	LRR 5.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCAATGTCCTGAAGGACGAAG	0.507													39	42					0	0	0.003214	0	0
NLRP4	147945	broad.mit.edu	37	19	56388524	56388524	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56388524G>A	uc002qmd.3	+	8	3110	c.2688G>A	c.(2686-2688)GAG>GAA	p.E896E	NLRP4_uc002qmf.2_Silent_p.E821E|NLRP4_uc010etf.2_Silent_p.E671E	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	896							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GCCGCTTAGAGATTCTTGGGT	0.468													40	80					0	0	0.002522	0	0
NLRP13	126204	broad.mit.edu	37	19	56421975	56421975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56421975G>A	uc010ygg.1	-	6	2261	c.2236C>T	c.(2236-2238)CTC>TTC	p.L746F		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	746	LRR 1.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GCAAGACAGAGACCCTTCACA	0.468													36	83					0	0	0.004289	0	0
NLRP13	126204	broad.mit.edu	37	19	56423184	56423185	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56423184_56423185CC>TT	uc010ygg.1	-	5	2023_2024	c.1998_1999GG>AA	c.(1996-2001)TTGGAG>TTAAAG	p.E667K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	667							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TCTTCGTCCTCCAAAATATTAA	0.406													46	67					0	0	0.004672	0	0
NLRP13	126204	broad.mit.edu	37	19	56424209	56424209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56424209C>T	uc010ygg.1	-	5	999	c.974G>A	c.(973-975)AGC>AAC	p.S325N		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	325	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		ATCATCCAAGCTCTCAGAGCG	0.463													33	56					0	0	0.002445	0	0
NLRP13	126204	broad.mit.edu	37	19	56424543	56424543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56424543C>T	uc010ygg.1	-	5	665	c.640G>A	c.(640-642)GAA>AAA	p.E214K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	214							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CGCTGCAGTTCCTCATGTTCG	0.512													49	93					0	0	0.003610	0	0
NLRP8	126205	broad.mit.edu	37	19	56459354	56459354	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56459354T>A	uc002qmh.2	+	1	157	c.86T>A	c.(85-87)TTC>TAC	p.F29Y	NLRP8_uc010etg.2_Missense_Mutation_p.F29Y	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	29						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CCCTGGACATTCTCTTGCTAC	0.512													23	37					0	0	0.002299	0	0
NLRP8	126205	broad.mit.edu	37	19	56467279	56467279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56467279G>A	uc002qmh.2	+	3	1926	c.1855G>A	c.(1855-1857)GAA>AAA	p.E619K	NLRP8_uc010etg.2_Missense_Mutation_p.E619K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	619						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AATCCGGGAGGAAGCCTTTGT	0.458													22	30					0	0	0.002299	0	0
NLRP8	126205	broad.mit.edu	37	19	56487507	56487507	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56487507A>T	uc002qmh.2	+	8	2785	c.2714A>T	c.(2713-2715)AAG>ATG	p.K905M	NLRP8_uc010etg.2_Missense_Mutation_p.K886M	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	905						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AGACTGAGAAAGTGTGACTTG	0.274													15	38					0	0	0.004007	0	0
NLRP5	126206	broad.mit.edu	37	19	56539526	56539526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56539526G>A	uc002qmj.2	+	7	1927	c.1927G>A	c.(1927-1929)GAA>AAA	p.E643K	NLRP5_uc002qmi.2_Missense_Mutation_p.E624K	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	643						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CCTCGTGAGCGAAGACGTAAG	0.557													17	34					0	0	0.004007	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704272	56704272	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56704272G>A	uc010ygh.1	-	1	150	c.150C>T	c.(148-150)TTC>TTT	p.F50F		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	50	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CTGGGCAGCTGAACATCCTGA	0.572													11	18					0	0	0.001855	0	0
ZNF583	147949	broad.mit.edu	37	19	56935630	56935630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:56935630C>T	uc010ygl.1	+	5	1768	c.1603C>T	c.(1603-1605)CTT>TTT	p.L535F	ZNF583_uc002qnc.2_Missense_Mutation_p.L535F|ZNF583_uc010ygm.1_Missense_Mutation_p.L535F	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	535	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		GCGTGCACATCTTGCTCATCA	0.244													30	40					0	0	0.001786	0	0
ZNF470	388566	broad.mit.edu	37	19	57088184	57088184	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:57088184C>T	uc002qnl.3	+	6	1063	c.387C>T	c.(385-387)GAC>GAT	p.D129D	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	129					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		AAAGCTATGACCTTGAATGTT	0.383													31	45					0	0	0.001512	0	0
PEG3	5178	broad.mit.edu	37	19	57325729	57325729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:57325729C>T	uc002qnu.2	-	7	4432	c.4081G>A	c.(4081-4083)GAT>AAT	p.D1361N	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.D1332N|PEG3_uc002qnv.2_Missense_Mutation_p.D1361N|PEG3_uc002qnw.2_Missense_Mutation_p.D1237N|PEG3_uc002qnx.2_Missense_Mutation_p.D1235N|PEG3_uc010etr.2_Missense_Mutation_p.D1361N	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1361	Glu-rich.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		gctgctTCATCTTCTTCTTCT	0.363													16	29					0	0	0.004007	0	0
ZNF264	9422	broad.mit.edu	37	19	57723784	57723784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:57723784C>T	uc002qob.2	+	4	1732	c.1319C>T	c.(1318-1320)TCT>TTT	p.S440F		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	440	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		ACCCACTGCTCTACTTTTATC	0.517													19	29					0	0	0.000743	0	0
ZNF551	90233	broad.mit.edu	37	19	58198865	58198865	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58198865C>T	uc002qpw.3	+	3	1397	c.1174C>T	c.(1174-1176)CGA>TGA	p.R392*	ZNF551_uc002qpv.3_Nonsense_Mutation_p.R335*|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	408	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CAATCTCATTCGACATAGAAG	0.423													54	57					0	0	0.003610	0	0
ZNF551	90233	broad.mit.edu	37	19	58199596	58199596	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58199596C>T	uc002qpw.3	+	3	2128	c.1905C>T	c.(1903-1905)TCC>TCT	p.S635S	ZNF551_uc002qpv.3_Silent_p.S578S|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	651	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GTGGGAAATCCTTTAGCCGCA	0.413													40	45					0	0	0.002222	0	0
ZNF418	147686	broad.mit.edu	37	19	58437565	58437565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58437565G>A	uc002qqs.1	-	4	2276	c.1984C>T	c.(1984-1986)CTC>TTC	p.L662F	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Missense_Mutation_p.L577F	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	662	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		TGTCGAAGGAGAGAAGAGCTT	0.408													30	45					0	0	0.002836	0	0
ZNF256	10172	broad.mit.edu	37	19	58452658	58452658	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58452658G>A	uc002qqu.2	-	3	1753	c.1518C>T	c.(1516-1518)CTC>CTT	p.L506L	ZNF256_uc010euj.2_Silent_p.L353L	NM_005773	NP_005764	Q9Y2P7	ZN256_HUMAN	zinc finger protein 256	506	C2H2-type 11.				multicellular organismal development|negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0155)		GGTGTTGAAGGAGCGTAGAGC	0.453													21	34					0	0	0.002299	0	0
C19orf18	147685	broad.mit.edu	37	19	58472857	58472857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58472857G>A	uc002qqv.2	-	5	538	c.434C>T	c.(433-435)CCG>CTG	p.P145L		NM_152474	NP_689687	Q8NEA5	CS018_HUMAN	hypothetical protein LOC147685 precursor	145	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)		TCCTAATAACGGTATCCTGAG	0.453													30	42					0	0	0.001512	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58549427	58549427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58549427G>A	uc002qrc.1	+	3	470	c.223G>A	c.(223-225)GAG>AAG	p.E75K	ZSCAN1_uc002qra.1_Missense_Mutation_p.E75K|ZSCAN1_uc002qrb.1_Missense_Mutation_p.E75K	NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	75	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GCGCTCCAAGGAGCAGATGCT	0.706													8	10					0	0	0.000443	0	0
ZNF324	25799	broad.mit.edu	37	19	58982657	58982657	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58982657C>T	uc002qsw.1	+	4	892	c.798C>T	c.(796-798)TTC>TTT	p.F266F	ZNF324_uc002qsx.1_Silent_p.F43F	NM_014347	NP_055162	O75467	Z324A_HUMAN	zinc finger protein 324	266	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		GCAAAGTGTTCGTGAAGAGCT	0.657													12	13					0	0	0.004007	0	0
ZNF324	25799	broad.mit.edu	37	19	58983411	58983411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58983411C>T	uc002qsw.1	+	4	1646	c.1552C>T	c.(1552-1554)CCC>TCC	p.P518S	ZNF324_uc002qsx.1_Missense_Mutation_p.P295S	NM_014347	NP_055162	O75467	Z324A_HUMAN	zinc finger protein 324	518					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		CAGCCTGCACCCCCAGGCCAG	0.706													8	24					0	0	0.004482	0	0
ZNF446	55663	broad.mit.edu	37	19	58991593	58991593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:58991593G>A	uc002qsz.2	+	7	970	c.853G>A	c.(853-855)GGC>AGC	p.G285S	ZNF446_uc002qta.2_Silent_p.R256R|ZNF446_uc010eur.2_3'UTR|SLC27A5_uc002qtb.2_RNA	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	285	Pro-rich.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		GCCGCCCCAGGGCCCAGGGCC	0.716													8	10					0	0	0.004482	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028923	59028923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:59028923G>A	uc002qtd.2	-	2	410	c.118C>T	c.(118-120)CGT>TGT	p.R40C	ZBTB45_uc002qte.2_Missense_Mutation_p.R40C|ZBTB45_uc002qtf.2_Missense_Mutation_p.R40C	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	40	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		GAAGCTTCACGAATGCGCACA	0.602											OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	37					0	0	0.001523	0	0
UBE2M	9040	broad.mit.edu	37	19	59068131	59068131	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr19:59068131G>A	uc002qtl.3	-	4	865	c.270C>T	c.(268-270)CCC>CCT	p.P90P	CHMP2A_uc002qti.2_5'Flank|CHMP2A_uc002qtj.2_5'Flank|CHMP2A_uc002qtk.2_5'Flank|LOC100131691_uc002qtm.2_5'Flank	NM_003969	NP_003960	P61081	UBC12_HUMAN	ubiquitin-conjugating enzyme E2M	90					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding|ribosomal S6-glutamic acid ligase activity|ubiquitin-protein ligase activity			ovary(1)|pancreas(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		TCACCTTGGGGGGATCATGCG	0.577													23	37					0	0	0.003954	0	0
ACP1	52	broad.mit.edu	37	2	277050	277050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:277050C>T	uc002qwg.2	+	5	460	c.364C>T	c.(364-366)CCA>TCA	p.P122S	ACP1_uc002qwh.2_RNA|ACP1_uc002qwf.2_Missense_Mutation_p.P122S	NM_007099	NP_009030	P24666	PPAC_HUMAN	acid phosphatase 1, soluble isoform b	122						cytoplasm|internal side of plasma membrane|nucleus|soluble fraction	acid phosphatase activity|identical protein binding|non-membrane spanning protein tyrosine phosphatase activity			skin(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00175)|Lung NSC(108;0.216)|all_epithelial(98;0.236)		all cancers(51;0.000391)|Epithelial(75;0.00281)|OV - Ovarian serous cystadenocarcinoma(76;0.00542)|GBM - Glioblastoma multiforme(21;0.127)		GAGCTATGATCCACAAAAACA	0.308													19	40					0	0	0.001882	0	0
TPO	7173	broad.mit.edu	37	2	1418234	1418234	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1418234C>T	uc002qww.2	+	2	145	c.54C>T	c.(52-54)GCC>GCT	p.A18A	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Silent_p.A18A|TPO_uc002qwu.2_Silent_p.A18A|TPO_uc002qwr.2_Silent_p.A18A|TPO_uc002qwx.2_Silent_p.A18A|TPO_uc010yio.1_Silent_p.A18A|TPO_uc010yip.1_Silent_p.A18A	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	18	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GCACAGAAGCCTTCTTCCCCT	0.448													15	11					0	0	0.004990	0	0
TPO	7173	broad.mit.edu	37	2	1437351	1437351	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1437351G>A	uc002qww.2	+	4	412	c.321G>A	c.(319-321)CTG>CTA	p.L107L	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Silent_p.L107L|TPO_uc002qwu.2_Silent_p.L107L|TPO_uc002qwr.2_Silent_p.L107L|TPO_uc002qwx.2_Silent_p.L107L|TPO_uc010yio.1_Silent_p.L107L|TPO_uc010yip.1_Silent_p.L107L	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	107	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	AAGTCAACCTGAAAACTCAAC	0.498													11	17					0	0	0.000978	0	0
TPO	7173	broad.mit.edu	37	2	1457515	1457515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1457515C>T	uc002qww.2	+	6	623	c.532C>T	c.(532-534)CCT>TCT	p.P178S	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.P178S|TPO_uc002qwr.2_Missense_Mutation_p.P178S|TPO_uc002qwx.2_Missense_Mutation_p.P178S|TPO_uc010yio.1_Missense_Mutation_p.P178S|TPO_uc010yip.1_Missense_Mutation_p.P178S	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	178	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	ACGATGGCTCCCTCCAGTCTA	0.602													19	38					0	0	0.000958	0	0
TPO	7173	broad.mit.edu	37	2	1488383	1488383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1488383G>A	uc002qww.2	+	9	1445	c.1354G>A	c.(1354-1356)GAT>AAT	p.D452N	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.D452N|TPO_uc002qwr.2_Missense_Mutation_p.D452N|TPO_uc002qwx.2_Missense_Mutation_p.D452N|TPO_uc010yio.1_Missense_Mutation_p.D279N|TPO_uc010yip.1_Missense_Mutation_p.D452N|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	452	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CACCCTGAGGGATTACATCCC	0.577													8	7					0	0	0.004482	0	0
TPO	7173	broad.mit.edu	37	2	1488505	1488505	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1488505C>T	uc002qww.2	+	9	1567	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Silent_p.F492F|TPO_uc002qwr.2_Silent_p.F492F|TPO_uc002qwx.2_Silent_p.F492F|TPO_uc010yio.1_Silent_p.F319F|TPO_uc010yip.1_Silent_p.F492F|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	492	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CCTTCCGCTTCGGCCATGCCA	0.652													11	23					0	0	0.001855	0	0
TPO	7173	broad.mit.edu	37	2	1544401	1544401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1544401C>T	uc002qww.2	+	16	2745	c.2654C>T	c.(2653-2655)TCG>TTG	p.S885L	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.S828L|TPO_uc002qwr.2_Missense_Mutation_p.S885L|TPO_uc002qwx.2_Missense_Mutation_p.S828L|TPO_uc010yio.1_Missense_Mutation_p.S712L|TPO_uc010yip.1_Missense_Mutation_p.S841L|TPO_uc002qwy.1_Missense_Mutation_p.S181L|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	885	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CTGCCCATCTCGGAGACAGGC	0.642													19	25					0	0	0.001216	0	0
PXDN	7837	broad.mit.edu	37	2	1677538	1677538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1677538C>T	uc002qxa.2	-	9	959	c.895G>A	c.(895-897)GAT>AAT	p.D299N	PXDN_uc002qxb.1_Missense_Mutation_p.D299N|PXDN_uc002qxc.1_Missense_Mutation_p.D116N	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	299	Ig-like C2-type 1.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		AGGGTCCCATCGTCCAGCAAG	0.498													36	25					0	0	0.004878	0	0
PXDN	7837	broad.mit.edu	37	2	1677558	1677558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1677558G>A	uc002qxa.2	-	9	939	c.875C>T	c.(874-876)TCC>TTC	p.S292F	PXDN_uc002qxb.1_Missense_Mutation_p.S292F|PXDN_uc002qxc.1_Missense_Mutation_p.S109F	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	292	Ig-like C2-type 1.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GTTTAGGCGGGAATCTGTCTT	0.512													10	32					0	0	0.000443	0	0
MYT1L	23040	broad.mit.edu	37	2	1893055	1893055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1893055C>T	uc002qxe.2	-	16	3305	c.2478G>A	c.(2476-2478)ATG>ATA	p.M826I	MYT1L_uc002qxd.2_Missense_Mutation_p.M824I|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	826					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCCGGGGTTTCATTTTGGTGT	0.547													25	42					0	0	0.001061	0	0
MYT1L	23040	broad.mit.edu	37	2	1926908	1926908	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1926908G>A	uc002qxe.2	-	10	1460	c.633C>T	c.(631-633)ATC>ATT	p.I211I	MYT1L_uc002qxd.2_Silent_p.I211I|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	211					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CATCCTCAGCGATTTTGCCGA	0.438													34	19					0	0	0.003271	0	0
MYT1L	23040	broad.mit.edu	37	2	1983324	1983324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:1983324G>A	uc002qxe.2	-	7	885	c.58C>T	c.(58-60)CCC>TCC	p.P20S	MYT1L_uc002qxd.2_Missense_Mutation_p.P20S	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	20					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GGTTCCACGGGAACTGCAGAG	0.443													21	23					0	0	0.001882	0	0
ALLC	55821	broad.mit.edu	37	2	3721680	3721680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:3721680G>A	uc010ewt.2	+	3	210	c.49G>A	c.(49-51)GAT>AAT	p.D17N		NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	36							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		ATTTGCAACAGATGACTTTTT	0.299										HNSCC(21;0.051)			7	4					0	0	0.004482	0	0
ALLC	55821	broad.mit.edu	37	2	3750152	3750152	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:3750152A>T	uc010ewt.2	+	12	1336	c.1175A>T	c.(1174-1176)TAA>TTA	p.*392L	ALLC_uc002qyf.2_Nonstop_Mutation_p.*163L	NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	392							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		GCAAACCCTTAACACACACAA	0.522										HNSCC(21;0.051)			13	9					0	0	0.004007	0	0
RSAD2	91543	broad.mit.edu	37	2	7023635	7023635	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:7023635G>A	uc002qyp.1	+	2	616	c.480G>A	c.(478-480)CTG>CTA	p.L160L		NM_080657	NP_542388	Q8WXG1	RSAD2_HUMAN	radical S-adenosyl methionine domain containing	160					defense response to virus	endoplasmic reticulum membrane|Golgi apparatus	catalytic activity|iron-sulfur cluster binding|metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			OV - Ovarian serous cystadenocarcinoma(76;0.191)		ATGGAAGCCTGATCCGGGAGA	0.478													18	23					0	0	0.001216	0	0
KIDINS220	57498	broad.mit.edu	37	2	8933996	8933996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:8933996G>A	uc002qzc.2	-	12	1402	c.1220C>T	c.(1219-1221)CCT>CTT	p.P407L	KIDINS220_uc010yiv.1_Missense_Mutation_p.P173L|KIDINS220_uc002qzd.2_Missense_Mutation_p.P365L|KIDINS220_uc010yiw.1_Missense_Mutation_p.P408L	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	407	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AATATTATAAGGAGTCTCGCC	0.388													26	33					0	0	0.003954	0	0
ITGB1BP1	9270	broad.mit.edu	37	2	9554384	9554384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:9554384G>A	uc002qzj.2	-	3	251	c.74C>T	c.(73-75)TCT>TTT	p.S25F	ITGB1BP1_uc002qzk.2_Missense_Mutation_p.S25F|ITGB1BP1_uc002qzl.2_RNA|ITGB1BP1_uc002qzm.2_Intron|ITGB1BP1_uc010yiy.1_Intron|ITGB1BP1_uc002qzn.1_Missense_Mutation_p.S25F	NM_004763	NP_004754	O14713	ITBP1_HUMAN	integrin cytoplasmic domain-associated protein 1	25	Ser/Thr-rich.				cell migration|cell-matrix adhesion|intracellular protein kinase cascade	cytosol|lamellipodium|membrane|ruffle	protein binding|protein binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.23)		AGAATCCACAGACTGAGAAAC	0.448													25	48					0	0	0.002780	0	0
E2F6	1876	broad.mit.edu	37	2	11593743	11593743	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:11593743G>A	uc002rbh.2	-	3	637	c.345C>T	c.(343-345)CTC>CTT	p.L115L	E2F6_uc002rbe.2_Silent_p.L40L|E2F6_uc002rbf.2_Silent_p.L83L|E2F6_uc002rbg.2_Silent_p.L40L|E2F6_uc002rbi.2_Silent_p.L40L|E2F6_uc010yjl.1_RNA|E2F6_uc002rbj.1_RNA	NM_198256	NP_937987	O75461	E2F6_HUMAN	E2F transcription factor 6	115	Potential.|DEF box.				negative regulation of transcription from RNA polymerase II promoter	MLL1 complex|transcription factor complex	DNA binding|transcription corepressor activity			skin(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.114)|OV - Ovarian serous cystadenocarcinoma(76;0.168)		TCTTTTCAACGAGGTCGATTC	0.423													37	77					0	0	0.002522	0	0
MYCN	4613	broad.mit.edu	37	2	16086192	16086192	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:16086192G>A	uc002rci.2	+	3	1668	c.1368G>A	c.(1366-1368)AAG>AAA	p.K456K	MYCN_uc010yjr.1_Silent_p.K448K	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	456					regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			AGTTGCTAAAGAAAATTGAAC	0.438			A		neuroblastoma								61	79					0	0	0.003610	0	0
FAM49A	81553	broad.mit.edu	37	2	16742265	16742265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:16742265C>T	uc010exm.1	-	8	851	c.703G>A	c.(703-705)GAA>AAA	p.E235K	FAM49A_uc002rck.1_Missense_Mutation_p.E235K	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	235						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			TACGGAGTTTCCAGCATGACT	0.403													30	42					0	0	0.002445	0	0
FAM49A	81553	broad.mit.edu	37	2	16742758	16742758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:16742758C>T	uc010exm.1	-	6	627	c.479G>A	c.(478-480)AGA>AAA	p.R160K	FAM49A_uc002rck.1_Missense_Mutation_p.R160K	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	160						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			ACTGATTGTTCTTCTGTAGTA	0.483													20	42					0	0	0.003954	0	0
VSNL1	7447	broad.mit.edu	37	2	17773486	17773486	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:17773486C>T	uc002rcm.2	+	2	529	c.145C>T	c.(145-147)CAG>TAG	p.Q49*		NM_003385	NP_003376	P62760	VISL1_HUMAN	visinin-like 1	49	EF-hand 1.						calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CGAGGAATTTCAGCAGCTCTA	0.413													35	60					0	0	0.005524	0	0
MSGN1	343930	broad.mit.edu	37	2	17997860	17997860	+	Silent	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:17997860T>G	uc010yjt.1	+	1	75	c.75T>G	c.(73-75)TCT>TCG	p.S25S		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	25					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GCCTGCTGTCTTCCTGGGACT	0.597													23	39					0	0	0.002780	0	0
MSGN1	343930	broad.mit.edu	37	2	17998085	17998085	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:17998085C>T	uc010yjt.1	+	1	300	c.300C>T	c.(298-300)TTC>TTT	p.F100F		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	100					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TGTTAGCTTTCCAGCCCACCC	0.647													14	25					0	0	0.004007	0	0
NT5C1B	93034	broad.mit.edu	37	2	18767596	18767596	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:18767596C>T	uc002rcz.2	-	4	466	c.362G>A	c.(361-363)TGG>TAG	p.W121*	NT5C1B_uc002rcy.2_Nonsense_Mutation_p.W121*|NT5C1B_uc010exr.2_Nonsense_Mutation_p.W61*|NT5C1B_uc010yju.1_Nonsense_Mutation_p.W61*|NT5C1B_uc002rda.2_Nonsense_Mutation_p.W61*|NT5C1B_uc010yjv.1_Nonsense_Mutation_p.W138*|NT5C1B_uc010yjw.1_Nonsense_Mutation_p.W104*|NT5C1B_uc010exs.2_Nonsense_Mutation_p.W121*|NT5C1B_uc002rdb.1_5'Flank	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	121	Ser-rich.				purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TATTCTAGACCATTGACTGCG	0.498													18	29					0	0	0.004990	0	0
MATN3	4148	broad.mit.edu	37	2	20205941	20205941	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:20205941G>A	uc002rdl.2	-	2	417	c.354C>T	c.(352-354)GCC>GCT	p.A118A	MATN3_uc010exu.1_Silent_p.A118A	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	118	VWFA.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCCGCGTGTCGGCTGGCCCAA	0.522													12	6					0	0	0.001368	0	0
LAPTM4A	9741	broad.mit.edu	37	2	20240717	20240717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:20240717G>A	uc002rdm.2	-	2	675	c.167C>T	c.(166-168)TCC>TTC	p.S56F	LAPTM4A_uc002rdn.2_Missense_Mutation_p.S14F|LAPTM4A_uc010yjx.1_Missense_Mutation_p.S56F	NM_014713	NP_055528	Q15012	LAP4A_HUMAN	lysosomal protein transmembrane 4 alpha	56					transport	endomembrane system|Golgi apparatus|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGCTGGCATGGAGTTTGGATG	0.373													35	45					0	0	0.001485	0	0
APOB	338	broad.mit.edu	37	2	21230212	21230212	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:21230212C>T	uc002red.2	-	26	9656	c.9528G>A	c.(9526-9528)CAG>CAA	p.Q3176Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3176	Heparin-binding.|Basic (possible receptor binding region).				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTTCTTATACTGAGCTTTTA	0.368													237	347					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21231943	21231943	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:21231943G>A	uc002red.2	-	26	7925	c.7797C>T	c.(7795-7797)GCC>GCT	p.A2599A		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2599					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGACTTCAAAGGCAGGCATGG	0.433													191	308					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21234237	21234237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:21234237C>T	uc002red.2	-	26	5631	c.5503G>A	c.(5503-5505)GAA>AAA	p.E1835K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1835					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGTTTTATTTCATTATTTTGG	0.448													215	243					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21234511	21234511	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:21234511C>A	uc002red.2	-	26	5357	c.5229G>T	c.(5227-5229)ATG>ATT	p.M1743I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1743					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CATATGAGCCCATCATGTCAT	0.413													13	739					0.00400662	0.00687449	0.004007	1	0
APOB	338	broad.mit.edu	37	2	21245886	21245886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:21245886G>A	uc002red.2	-	18	2761	c.2633C>T	c.(2632-2634)TCC>TTC	p.S878F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	878					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CACAGACACGGAGGGTTTTGC	0.478													163	162					0	0	0.003610	0	0
ATAD2B	54454	broad.mit.edu	37	2	24110840	24110840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:24110840G>A	uc002rek.3	-	4	728	c.434C>T	c.(433-435)CCC>CTC	p.P145L	ATAD2B_uc010yki.1_RNA|ATAD2B_uc010exx.1_Missense_Mutation_p.P145L	NM_017552	NP_060022	Q9ULI0	ATD2B_HUMAN	ATPase family, AAA domain containing 2B	145							ATP binding|nucleoside-triphosphatase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCCTCGAAGGGGATGGCTTCG	0.353													12	33					0	0	0.000978	0	0
C2orf44	80304	broad.mit.edu	37	2	24260959	24260959	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:24260959G>C	uc002rep.2	-	2	1537	c.1406C>G	c.(1405-1407)CCA>CGA	p.P469R	C2orf44_uc010eya.2_Missense_Mutation_p.P469R	NM_025203	NP_079479	Q9H6R7	CB044_HUMAN	hypothetical protein LOC80304 isoform 1	469							protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACAAAAATCTGGGGAAAGACT	0.383													3	99					0	0	0.004672	0	0
NCOA1	8648	broad.mit.edu	37	2	24930085	24930085	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:24930085C>T	uc002rfk.2	+	11	2004	c.1746C>T	c.(1744-1746)TCC>TCT	p.S582S	NCOA1_uc010eye.2_Silent_p.S582S|NCOA1_uc002rfi.2_Silent_p.S431S|NCOA1_uc002rfj.2_Silent_p.S582S|NCOA1_uc002rfl.2_Silent_p.S582S	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	582	Ser-rich.								PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGCTGAGTCCAAAGATAACA	0.418			T	PAX3	alveolar rhadomyosarcoma								23	34					0	0	0.001882	0	0
HADHA	3030	broad.mit.edu	37	2	26457131	26457131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:26457131G>A	uc002rgy.2	-	5	537	c.407C>T	c.(406-408)CCT>CTT	p.P136L	HADHA_uc010yks.1_Missense_Mutation_p.P49L|HADHA_uc010ykt.1_Missense_Mutation_p.P49L	NM_000182	NP_000173	P40939	ECHA_HUMAN	mitochondrial trifunctional protein, alpha	136					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	AGCCACAATAGGCTTTGTGGA	0.433													29	41					0	0	0.001786	0	0
GTF3C2	2976	broad.mit.edu	37	2	27552031	27552031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:27552031G>A	uc002rjv.1	-	15	2359	c.1996C>T	c.(1996-1998)CCC>TCC	p.P666S	GTF3C2_uc010eyy.1_Missense_Mutation_p.P121S|GTF3C2_uc002rju.1_Missense_Mutation_p.P677S|GTF3C2_uc002rjw.1_Missense_Mutation_p.P666S	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	666						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCATTGTAGGGAAGCAGCCAG	0.517													97	103					0	0	0.003610	0	0
PPM1G	5496	broad.mit.edu	37	2	27606282	27606282	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:27606282G>A	uc002rkl.2	-	8	1259	c.1152C>T	c.(1150-1152)GTC>GTT	p.V384V	ZNF513_uc002rkj.2_5'Flank|ZNF513_uc002rkk.2_5'Flank|PPM1G_uc002rkm.2_Silent_p.V165V	NM_002707	NP_002698	O15355	PPM1G_HUMAN	protein phosphatase 1G	384					cell cycle arrest|protein dephosphorylation	cytoplasm|nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					CATCCATGGTGACCTTGCCAC	0.512													38	72					0	0	0.003214	0	0
SLC4A1AP	22950	broad.mit.edu	37	2	27887052	27887052	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:27887052C>G	uc002rlk.3	+	1	715	c.433C>G	c.(433-435)CCT>GCT	p.P145A	SUPT7L_uc002rlh.1_5'Flank|SUPT7L_uc002rli.1_5'Flank|SUPT7L_uc010ymf.1_5'Flank|SUPT7L_uc002rlj.1_5'Flank|SUPT7L_uc010ezh.1_5'Flank	NM_018158	NP_060628	Q9BWU0	NADAP_HUMAN	solute carrier family 4 (anion exchanger),	145						cytoplasm|nucleus	double-stranded RNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)					GGTTTCTTCCCCTGGCGGTCC	0.652													12	24					0	0	0.002450	0	0
FAM179A	165186	broad.mit.edu	37	2	29255833	29255833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:29255833G>A	uc010ezl.2	+	15	2397	c.2046G>A	c.(2044-2046)ATG>ATA	p.M682I	FAM179A_uc010ymm.1_Missense_Mutation_p.M627I|FAM179A_uc002rmr.3_Missense_Mutation_p.M209I|FAM179A_uc002rms.1_5'Flank	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	682							binding			ovary(3)|skin(1)	4						ATATCTTGATGGCGAACACTA	0.443													10	18					0	0	0.001368	0	0
C2orf71	388939	broad.mit.edu	37	2	29294859	29294859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:29294859G>A	uc002rmt.1	-	1	2269	c.2269C>T	c.(2269-2271)CCC>TCC	p.P757S		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	757					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CTGAGGCAGGGACTTGCCCCA	0.542													18	19					0	0	0.000743	0	0
C2orf71	388939	broad.mit.edu	37	2	29295461	29295461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:29295461G>A	uc002rmt.1	-	1	1667	c.1667C>T	c.(1666-1668)CCT>CTT	p.P556L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	556					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						ACAGGGCACAGGGACAAACTT	0.597													14	34					0	0	0.003163	0	0
CLIP4	79745	broad.mit.edu	37	2	29386753	29386753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:29386753G>A	uc002rmv.2	+	13	1830	c.1591G>A	c.(1591-1593)GGA>AGA	p.G531R	CLIP4_uc002rmu.2_Missense_Mutation_p.G531R|CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	531	CAP-Gly 2.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGGTTCAGTTGGAGGTGTGCA	0.378													46	35					0	0	0.003610	0	0
ALK	238	broad.mit.edu	37	2	29416108	29416108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:29416108C>T	uc002rmy.2	-	29	5752	c.4845G>A	c.(4843-4845)ATG>ATA	p.M1615I	ALK_uc010ymo.1_Missense_Mutation_p.M547I	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1615	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CAGGCTGGTTCATGCTATTCT	0.542			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				18	28					0	0	0.000743	0	0
ALK	238	broad.mit.edu	37	2	29543716	29543716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:29543716C>T	uc002rmy.2	-	7	2354	c.1447G>A	c.(1447-1449)GAA>AAA	p.E483K		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	483	MAM 2.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	AAGCCATCTTCAAAGTTGCAG	0.522			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				56	49					0	0	0.003610	0	0
CAPN13	92291	broad.mit.edu	37	2	30966426	30966426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:30966426G>A	uc002rnn.2	-	12	1444	c.1268C>T	c.(1267-1269)CCA>CTA	p.P423L	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	423					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AAACACGGGTGGAAATTTCTC	0.473													34	30					0	0	0.003271	0	0
XDH	7498	broad.mit.edu	37	2	31589781	31589781	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:31589781C>T	uc002rnv.1	-	21	2356	c.2277G>A	c.(2275-2277)GGG>GGA	p.G759G		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	759					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GCTCCATCTCCCCTGCCTCGC	0.557													36	49					0	0	0.004878	0	0
SRD5A2	6716	broad.mit.edu	37	2	31754414	31754414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:31754414G>A	uc002rnw.1	-	5	732	c.661C>T	c.(661-663)CTT>TTT	p.L221F		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	221	Helical; (Potential).				androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	AGGAAACAAAGTGAGAAAAAT	0.453													17	24					0	0	0.004990	0	0
SRD5A2	6716	broad.mit.edu	37	2	31756538	31756538	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:31756538G>A	uc002rnw.1	-	4	521	c.450C>T	c.(448-450)GTC>GTT	p.V150V		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	150	Helical; (Potential).				androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	TAAATAAGAAGACACCTTGAC	0.373													6	11					0	0	0.003080	0	0
NLRC4	58484	broad.mit.edu	37	2	32476000	32476000	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:32476000T>A	uc002roi.2	-	4	1179	c.933A>T	c.(931-933)GAA>GAT	p.E311D	NLRC4_uc002roj.1_Missense_Mutation_p.E311D|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	311	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TGATCAGCACTTCTCGGATGA	0.527													27	33					0	0	0.001512	0	0
CRIM1	51232	broad.mit.edu	37	2	36691732	36691732	+	Missense_Mutation	SNP	C	T	T	rs142032514		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:36691732C>T	uc002rpd.2	+	5	964	c.925C>T	c.(925-927)CCC>TCC	p.P309S		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	309	Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				GGGATCCACTCCCCGCATAGT	0.483													55	54					0	0	0.003610	0	0
FAM82A1	151393	broad.mit.edu	37	2	38201340	38201340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:38201340C>T	uc002rql.2	+	3	733	c.610C>T	c.(610-612)CGT>TGT	p.R204C	FAM82A1_uc002rqn.1_Missense_Mutation_p.R382C|FAM82A1_uc002rqk.1_Missense_Mutation_p.R59C|FAM82A1_uc002rqm.2_Missense_Mutation_p.R59C	NM_144713	NP_653314	Q96LZ7	RMD2_HUMAN	family with sequence similarity 82, member A1	204						cytoplasm|integral to membrane|microtubule|spindle pole	binding			ovary(1)	1						TGAACTACTTCGTGACCACAA	0.338													26	29					0	0	0.001512	0	0
DHX57	90957	broad.mit.edu	37	2	39074204	39074204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:39074204G>A	uc002rrf.2	-	11	2275	c.2176C>T	c.(2176-2178)CCT>TCT	p.P726S	DHX57_uc002rrd.3_Missense_Mutation_p.P110S|DHX57_uc002rre.2_Missense_Mutation_p.P159S	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	726							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TGATCAACAGGAAATGTACGA	0.279													16	21					0	0	0.000958	0	0
SLC8A1	6546	broad.mit.edu	37	2	40342548	40342548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:40342548C>T	uc002rrx.2	-	10	2791	c.2767G>A	c.(2767-2769)GGG>AGG	p.G923R	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.G918R|SLC8A1_uc002rrz.2_Missense_Mutation_p.G910R|SLC8A1_uc002rsa.2_Missense_Mutation_p.G887R|SLC8A1_uc002rsd.3_Missense_Mutation_p.G887R	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	923	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	AGCAGCACCCCCACATTGATG	0.557													16	42					0	0	0.004990	0	0
SLC8A1	6546	broad.mit.edu	37	2	40655722	40655722	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:40655722G>A	uc002rrx.2	-	1	1723	c.1699C>T	c.(1699-1701)CGA>TGA	p.R567*	SLC8A1_uc002rry.2_Nonsense_Mutation_p.R567*|SLC8A1_uc002rrz.2_Nonsense_Mutation_p.R567*|SLC8A1_uc002rsa.2_Nonsense_Mutation_p.R567*|SLC8A1_uc002rsd.3_Nonsense_Mutation_p.R567*|SLC8A1_uc002rsb.1_Nonsense_Mutation_p.R567*|SLC8A1_uc010fan.1_Nonsense_Mutation_p.R567*|SLC8A1_uc002rsc.1_Nonsense_Mutation_p.R567*	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	567	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	ACATTTCCTCGAGCTCCAGAT	0.463													47	91					0	0	0.003610	0	0
PKDCC	91461	broad.mit.edu	37	2	42282532	42282532	+	Silent	SNP	C	T	T	rs142280977	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:42282532C>T	uc002rsg.2	+	5	1400	c.1221C>T	c.(1219-1221)ACC>ACT	p.T407T		NM_138370	NP_612379	Q504Y2	PKDCC_HUMAN	protein kinase-like protein SgK493	407	Protein kinase.				cell differentiation|embryonic digestive tract development|lung alveolus development|negative regulation of Golgi to plasma membrane protein transport|ossification|palate development|positive regulation of bone mineralization|positive regulation of chondrocyte differentiation|protein transport	Golgi apparatus	ATP binding|protein kinase activity			breast(1)	1						GCAGCAGTACCGGTGAGTGGC	0.617													6	13					0	0	0.001984	0	0
ABCG5	64240	broad.mit.edu	37	2	44064986	44064986	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:44064986G>A	uc002rtn.2	-	2	392	c.252C>T	c.(250-252)ATC>ATT	p.I84I	ABCG5_uc002rto.2_Silent_p.I3I|ABCG5_uc002rtp.2_5'UTR|ABCG8_uc002rtq.2_5'Flank|ABCG8_uc010yoa.1_5'Flank	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	84	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				AGCTTCCTAGGATGCACATGA	0.483													111	148					0	0	0.003610	0	0
LRPPRC	10128	broad.mit.edu	37	2	44145436	44145436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:44145436G>A	uc002rtr.2	-	28	3056	c.2998C>T	c.(2998-3000)CTT>TTT	p.L1000F	LRPPRC_uc010yob.1_Missense_Mutation_p.L900F	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	1000					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCCTCTCTAAGGATTTCTGCT	0.358													217	258					0	0	0.003610	0	0
PPM1B	5495	broad.mit.edu	37	2	44436387	44436387	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:44436387T>G	uc002rtt.2	+	3	1313	c.885T>G	c.(883-885)TTT>TTG	p.F295L	PPM1B_uc002rts.2_Missense_Mutation_p.F295L|PPM1B_uc002rtu.2_Missense_Mutation_p.F295L|PPM1B_uc002rtv.2_Missense_Mutation_p.F8L|PPM1B_uc002rtw.2_Missense_Mutation_p.F295L|PPM1B_uc002rtx.2_Missense_Mutation_p.F295L	NM_002706	NP_002697	O75688	PPM1B_HUMAN	protein phosphatase 1B isoform 1	295					protein dephosphorylation	protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity			kidney(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TAGTTTGCTTTTCAAATGCTC	0.328													125	180					0	0	0.003610	0	0
SLC3A1	6519	broad.mit.edu	37	2	44513207	44513207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:44513207G>A	uc002ruc.3	+	4	880	c.802G>A	c.(802-804)GAA>AAA	p.E268K	SLC3A1_uc002rty.2_Missense_Mutation_p.E268K|SLC3A1_uc002rtz.2_Missense_Mutation_p.E268K|SLC3A1_uc002rua.2_Missense_Mutation_p.E268K|SLC3A1_uc002rub.2_Missense_Mutation_p.E268K|SLC3A1_uc002rud.3_5'UTR	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	268	Extracellular (Potential).		E -> K (in CSNU1; reduction in amino acid transport activity).		carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	GCACTTTGACGAAGTGCGAAA	0.358													50	77					0	0	0.003610	0	0
SOCS5	9655	broad.mit.edu	37	2	46985927	46985927	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:46985927C>T	uc002rvf.2	+	2	422	c.258C>T	c.(256-258)ATC>ATT	p.I86I	SOCS5_uc010yoe.1_Silent_p.I55I|SOCS5_uc002rvg.2_Silent_p.I86I	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	86					cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			CCACAGAAATCCCTCAAATTG	0.398													18	28					0	0	0.001882	0	0
TTC7A	57217	broad.mit.edu	37	2	47221612	47221612	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:47221612C>T	uc002rvo.2	+	7	1328	c.960C>T	c.(958-960)GCC>GCT	p.A320A	TTC7A_uc002rvm.2_Silent_p.A286A|TTC7A_uc002rvn.1_Silent_p.A201A|TTC7A_uc010fbb.2_Silent_p.A320A|TTC7A_uc010fbc.2_Intron|TTC7A_uc002rvp.2_Silent_p.A201A|TTC7A_uc002rvq.2_Silent_p.A60A|TTC7A_uc002rvr.2_5'UTR	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	320							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			GTTCTTTCGCCACTCAGGCCC	0.597													34	48					0	0	0.002836	0	0
MSH2	4436	broad.mit.edu	37	2	47693882	47693882	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:47693882C>T	uc002rvy.1	+	10	1664	c.1596C>T	c.(1594-1596)GTC>GTT	p.V532V	MSH2_uc010yoh.1_Silent_p.V466V|MSH2_uc002rvz.2_Silent_p.V532V|MSH2_uc010fbg.2_Silent_p.V342V|MSH2_uc010fbh.1_RNA|MSH2_uc010fbi.1_Intron	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	532					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(2)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AAGAAAAAGTCCTTCGTAACA	0.343			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				38	34					0	0	0.005524	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808301	48808301	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:48808301C>T	uc010yol.1	+	1	576	c.529C>T	c.(529-531)CGA>TGA	p.R177*	STON1_uc002rwo.3_Nonsense_Mutation_p.R177*|STON1_uc010fbm.2_Nonsense_Mutation_p.R177*|STON1-GTF2A1L_uc002rwp.1_Nonsense_Mutation_p.R177*|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Nonsense_Mutation_p.R177*	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	177					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TCAGTATTTTCGAGAGGACTG	0.438													19	47					0	0	0.001216	0	0
FSHR	2492	broad.mit.edu	37	2	49190007	49190007	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:49190007G>A	uc002rww.2	-	10	2027	c.1953C>T	c.(1951-1953)GCC>GCT	p.A651A	FSHR_uc002rwx.2_Silent_p.A589A|FSHR_uc010fbn.2_Silent_p.A625A	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	651	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TATAAATTTGGGCTTGCATTT	0.473									Gonadal_Dysgenesis_46_XX				23	28					0	0	0.002780	0	0
FSHR	2492	broad.mit.edu	37	2	49190868	49190868	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:49190868G>A	uc002rww.2	-	10	1166	c.1092C>T	c.(1090-1092)ATC>ATT	p.I364I	FSHR_uc002rwx.2_Silent_p.I302I|FSHR_uc010fbn.2_Silent_p.I338I	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	364	Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GGACTCTGAGGATGTTGTACC	0.458									Gonadal_Dysgenesis_46_XX				23	41					0	0	0.001882	0	0
NRXN1	9378	broad.mit.edu	37	2	50724718	50724719	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:50724718_50724719CC>TT	uc010fbq.2	-	14	4228_4229	c.2751_2752GG>AA	c.(2749-2754)ATGGCA>ATAACA	p.917_918MA>IT	NRXN1_uc002rxb.3_Missense_Mutation_p.549_550MA>IT|NRXN1_uc002rxe.3_Missense_Mutation_p.877_878MA>IT|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TCAATGTATGCCATTCCATTAA	0.436													14	36					0	0	0.004672	0	0
PNPT1	87178	broad.mit.edu	37	2	55920892	55920892	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:55920892G>A	uc002rzf.2	-	1	120	c.67C>T	c.(67-69)CTG>TTG	p.L23L	PNPT1_uc002rzg.2_RNA	NM_033109	NP_149100	Q8TCS8	PNPT1_HUMAN	polyribonucleotide nucleotidyltransferase 1	23					mRNA catabolic process|RNA processing	plasma membrane	3'-5'-exoribonuclease activity|polyribonucleotide nucleotidyltransferase activity|RNA binding				0			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			CGCCGTGGCAGAAGGAAAGGA	0.657													17	34					0	0	0.002299	0	0
EFEMP1	2202	broad.mit.edu	37	2	56098004	56098004	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:56098004G>A	uc002rzh.2	-	10	1501	c.1171C>T	c.(1171-1173)CAG>TAG	p.Q391*	EFEMP1_uc002rzi.2_Nonsense_Mutation_p.Q391*|EFEMP1_uc002rzj.2_Nonsense_Mutation_p.Q391*|EFEMP1_uc010ypc.1_Nonsense_Mutation_p.Q253*	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	391	Mediates interaction with TIMP3.				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			ACTATTGACTGGGGCAGTTCT	0.453													17	28					0	0	0.004007	0	0
BCL11A	53335	broad.mit.edu	37	2	60688199	60688199	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:60688199G>A	uc002sae.1	-	4	2076	c.1848C>T	c.(1846-1848)GGC>GGT	p.G616G	BCL11A_uc002sab.2_Silent_p.G616G|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.G285G|BCL11A_uc010ypj.1_Silent_p.G582G|BCL11A_uc002sad.1_Silent_p.G464G|BCL11A_uc002saf.1_Silent_p.G582G	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	616					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TTTTGGACAGGCCCCCCGAGG	0.667			T	IGH@	B-CLL								65	94					0	0	0.003610	0	0
BCL11A	53335	broad.mit.edu	37	2	60689273	60689273	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:60689273G>A	uc002sae.1	-	4	1002	c.774C>T	c.(772-774)CGC>CGT	p.R258R	BCL11A_uc002sab.2_Silent_p.R258R|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Silent_p.R224R|BCL11A_uc002sad.1_Silent_p.R106R|BCL11A_uc002saf.1_Silent_p.R224R	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	258					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TGGGTGGAAAGCGCCCTTCTG	0.582			T	IGH@	B-CLL								143	156					0	0	0.003610	0	0
PROKR1	10887	broad.mit.edu	37	2	68873218	68873218	+	Missense_Mutation	SNP	C	T	T	rs61742478	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:68873218C>T	uc010yqj.1	+	1	265	c.265C>T	c.(265-267)CGC>TGC	p.R89C	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	89	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						TGCCCTGGTCCGCTACAAGAA	0.547													56	71					0	0	0.003610	0	0
BMP10	27302	broad.mit.edu	37	2	69093233	69093233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:69093233C>T	uc002sez.1	-	2	964	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	269					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TCATTCAGTTCCTCCTTCCTC	0.478													21	30					0	0	0.001523	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188221	70188221	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:70188221C>T	uc002sfz.3	-	1	1177	c.600G>A	c.(598-600)GGG>GGA	p.G200G		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	200	Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						TGCCAATCTTCCCCTTGAGAT	0.602													29	46					0	0	0.003271	0	0
TGFA	7039	broad.mit.edu	37	2	70692814	70692814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:70692814G>A	uc002sgs.3	-	3	355	c.149C>T	c.(148-150)TCC>TTC	p.S50F	TGFA_uc010fdq.2_Missense_Mutation_p.S56F|TGFA_uc010fdr.2_Missense_Mutation_p.S55F|TGFA_uc002sgt.3_Missense_Mutation_p.S49F|TGFA_uc002sgu.2_Missense_Mutation_p.S49F|TGFA_uc002sgv.2_Missense_Mutation_p.S50F|TGFA_uc002sgw.2_Missense_Mutation_p.S49F	NM_003236	NP_003227	P01135	TGFA_HUMAN	transforming growth factor, alpha isoform 1	50	EGF-like.|Extracellular (Potential).				activation of MAPK activity|cell proliferation|positive regulation of cell division|positive regulation of epidermal growth factor receptor activity|positive regulation of epithelial cell proliferation|positive regulation of mitosis	cell surface|extracellular space|integral to membrane|plasma membrane	epidermal growth factor receptor binding|growth factor activity|MAP kinase kinase activity|signal transducer activity			prostate(1)	1						CTGAGTGTGGGAATCTGGGCA	0.557													18	18					0	0	0.001523	0	0
ADD2	119	broad.mit.edu	37	2	70922898	70922898	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:70922898G>A	uc002sgz.2	-	6	975	c.510C>T	c.(508-510)ATC>ATT	p.I170I	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.I170I|ADD2_uc002sha.2_Silent_p.I170I|ADD2_uc002sgx.2_Silent_p.I170I|ADD2_uc010fdt.1_Silent_p.I170I|ADD2_uc002shc.1_Silent_p.I170I|ADD2_uc002shd.1_Silent_p.I170I|ADD2_uc010fdu.1_Silent_p.I186I	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	170					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CCTTAGGGCTGATCAGGAAGT	0.522													17	17					0	0	0.002299	0	0
CLEC4F	165530	broad.mit.edu	37	2	71043299	71043299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:71043299G>A	uc002shf.2	-	4	1291	c.1214C>T	c.(1213-1215)TCC>TTC	p.S405F	CLEC4F_uc010yqv.1_Missense_Mutation_p.S405F	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	405	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						CTGGGTCTGGGAAGTTAAGGC	0.443													24	36					0	0	0.002299	0	0
MCEE	84693	broad.mit.edu	37	2	71351523	71351523	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:71351523A>T	uc002shs.2	-	2	236	c.191T>A	c.(190-192)TTT>TAT	p.F64Y		NM_032601	NP_115990	Q96PE7	MCEE_HUMAN	methylmalonyl CoA epimerase precursor	64					fatty acid beta-oxidation|L-methylmalonyl-CoA metabolic process	mitochondrial matrix	methylmalonyl-CoA epimerase activity			ovary(1)	1						ATTCTTATAAAATGCTGCAGC	0.473													48	92					0	0	0.003610	0	0
MPHOSPH10	10199	broad.mit.edu	37	2	71377037	71377037	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:71377037C>T	uc002sht.1	+	11	2290	c.1938C>T	c.(1936-1938)TTC>TTT	p.F646F		NM_005791	NP_005782	O00566	MPP10_HUMAN	M-phase phosphoprotein 10	646					RNA splicing, via transesterification reactions|rRNA processing	chromosome|nucleolus|small nucleolar ribonucleoprotein complex	protein binding			skin(2)|ovary(1)	3						CTCAAGCATTCTTTTCTAAAT	0.303													57	65					0	0	0.003610	0	0
ZNF638	27332	broad.mit.edu	37	2	71591276	71591276	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:71591276C>T	uc002shx.2	+	5	1930	c.1611C>T	c.(1609-1611)TCC>TCT	p.S537S	ZNF638_uc010fec.2_Silent_p.S643S|ZNF638_uc010yqw.1_Silent_p.S116S|ZNF638_uc002shw.2_Silent_p.S537S|ZNF638_uc002shy.2_Silent_p.S537S|ZNF638_uc002shz.2_Silent_p.S537S|ZNF638_uc002sia.2_Silent_p.S537S|ZNF638_uc002sib.1_Silent_p.S537S|ZNF638_uc010fed.2_5'Flank	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	537	Arg-rich.				RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						GATCCAGATCCAGATCCCGTT	0.438													21	23					0	0	0.001882	0	0
DYSF	8291	broad.mit.edu	37	2	71825770	71825770	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:71825770G>A	uc002sie.2	+	33	3973	c.3597G>A	c.(3595-3597)TGG>TGA	p.W1199*	DYSF_uc010feg.2_Nonsense_Mutation_p.W1230*|DYSF_uc010feh.2_Nonsense_Mutation_p.W1185*|DYSF_uc002sig.3_Nonsense_Mutation_p.W1185*|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Nonsense_Mutation_p.W1199*|DYSF_uc010fef.2_Nonsense_Mutation_p.W1216*|DYSF_uc010fei.2_Nonsense_Mutation_p.W1216*|DYSF_uc010fek.2_Nonsense_Mutation_p.W1217*|DYSF_uc010fej.2_Nonsense_Mutation_p.W1186*|DYSF_uc010fel.2_Nonsense_Mutation_p.W1186*|DYSF_uc010feo.2_Nonsense_Mutation_p.W1231*|DYSF_uc010fem.2_Nonsense_Mutation_p.W1200*|DYSF_uc010fen.2_Nonsense_Mutation_p.W1217*|DYSF_uc002sif.2_Nonsense_Mutation_p.W1200*|DYSF_uc010yqy.1_Nonsense_Mutation_p.W80*	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1199	Cytoplasmic (Potential).|C2 4.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACCCCACCTGGGACCAGACGC	0.592													22	32					0	0	0.002780	0	0
TPRKB	51002	broad.mit.edu	37	2	73957719	73957719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:73957719G>A	uc002sjn.2	-	4	520	c.409C>T	c.(409-411)CCT>TCT	p.P137S	TPRKB_uc002sjm.2_Missense_Mutation_p.P176S|TPRKB_uc002sjl.2_Missense_Mutation_p.P104S|TPRKB_uc002sjo.2_Missense_Mutation_p.P137S|TPRKB_uc010yrm.1_Missense_Mutation_p.P104S	NM_016058	NP_057142	Q9Y3C4	TPRKB_HUMAN	TP53RK binding protein	137					protein catabolic process	cytosol|nucleus	protein kinase binding			ovary(1)|skin(1)	2						ATTATTTCAGGAAGATTTTTC	0.318													25	47					0	0	0.005443	0	0
HK2	3099	broad.mit.edu	37	2	75107649	75107650	+	Missense_Mutation	DNP	CC	TT	TT	rs142174869		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:75107649_75107650CC>TT	uc002snd.2	+	10	3449_3450	c.1523_1524CC>TT	c.(1522-1524)CCC>CTT	p.P508L		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	508	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						GCCAGTGCCCCCGTCAAGATGC	0.599													13	22					0	0	0.004672	0	0
LRRTM4	80059	broad.mit.edu	37	2	76975909	76975909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:76975909C>T	uc002snr.2	-	4	2100	c.1685G>A	c.(1684-1686)GGC>GAC	p.G562D	LRRTM4_uc002snq.2_Missense_Mutation_p.G562D	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	562	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		CAGCTCCAGGCCGGGGCTTTC	0.597													32	61					0	0	0.002836	0	0
CTNNA2	1496	broad.mit.edu	37	2	80874951	80874951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:80874951C>T	uc010ysh.1	+	18	2821	c.2816C>T	c.(2815-2817)TCG>TTG	p.S939L	CTNNA2_uc010yse.1_Missense_Mutation_p.S891L|CTNNA2_uc010ysf.1_Missense_Mutation_p.S891L|CTNNA2_uc010ysg.1_Missense_Mutation_p.S846L|CTNNA2_uc010ysi.1_Missense_Mutation_p.S523L|CTNNA2_uc010ysj.1_Missense_Mutation_p.S220L	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	939					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AAACACATTTCGCCTGTACAG	0.368													59	87					0	0	0.003610	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84517962	84517962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:84517962G>A	uc010ffz.1	+	1	157	c.20G>A	c.(19-21)GGA>GAA	p.G7E		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						TCCAGTCAAGGAAACTTTGAG	0.577													9	9					0	0	0.004482	0	0
DNAH6	1768	broad.mit.edu	37	2	84811345	84811345	+	Missense_Mutation	SNP	G	A	A	rs111548143		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:84811345G>A	uc010fgb.2	+	15	2589	c.2452G>A	c.(2452-2454)GAA>AAA	p.E818K	DNAH6_uc002soo.2_Missense_Mutation_p.E397K|DNAH6_uc002sop.2_Missense_Mutation_p.E397K	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	818	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						ATTAAACAACGAAGTGAATGA	0.303													23	36					0	0	0.002299	0	0
SMYD1	150572	broad.mit.edu	37	2	88390602	88390602	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:88390602C>T	uc002ssr.2	+	4	602	c.600C>T	c.(598-600)AAC>AAT	p.N200N	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_5'UTR	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	200	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TCTTCCCCAACCTGGGCCTGG	0.507													50	60					0	0	0.003610	0	0
SMYD1	150572	broad.mit.edu	37	2	88405849	88405849	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:88405849G>A	uc002ssr.2	+	8	989	c.987G>A	c.(985-987)GTG>GTA	p.V329V	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Silent_p.V25V	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	329					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TCTAGGTTGTGAAATTATGCC	0.502													16	28					0	0	0.001216	0	0
Unknown	0	broad.mit.edu	37	2	89399461	89399461	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:89399461G>A	uc010ytr.1	-	46		c.4984C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GAACTTTGATGGGACCCCACT	0.473													47	56					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	2	89416997	89416997	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:89416997C>T	uc010ytr.1	-	42		c.4605G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGGGCTTTCCCTGGTTTCTGC	0.522													50	68					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	2	89495568	89495568	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:89495568G>A	uc010ytr.1	-	25		c.3293C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ACTGTGGGAGGATCTTGTGCA	0.527													20	13					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	2	89513347	89513347	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:89513347G>A	uc010ytr.1	-	22		c.2665C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGAGCAGCAGGAGTCCCAGGA	0.493													21	43					0	0	0.001512	0	0
Unknown	0	broad.mit.edu	37	2	90122085	90122085	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:90122085G>A	uc010fhm.2	+	16		c.1954G>A								Parts of antibodies, mostly variable regions.																		GCAGCCTGCAGCCTGAAGATT	0.483													19	45					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	2	90211735	90211735	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:90211735G>A	uc010fhm.2	+	25		c.3328G>A								Parts of antibodies, mostly variable regions.																		GACCCAGACGGAACCATGGAA	0.572													17	37					0	0	0.001523	0	0
LOC654342	654342	broad.mit.edu	37	2	91843511	91843511	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:91843511G>A	uc002sts.3	-	2		c.59C>T			LOC654342_uc002stt.2_RNA|LOC654342_uc010yub.1_RNA					Homo sapiens cDNA clone IMAGE:4801360.												0						GGGCTAGCTTGGGGGTCTGGC	0.597													5	39					0	0	0.004482	0	0
PROM2	150696	broad.mit.edu	37	2	95944836	95944836	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:95944836G>A	uc002suh.1	+	10	1351	c.1218G>A	c.(1216-1218)GAG>GAA	p.E406E	PROM2_uc002sui.2_Silent_p.E406E|PROM2_uc002suj.2_Silent_p.E60E|PROM2_uc002suk.2_Silent_p.E406E|PROM2_uc002sul.2_5'UTR|PROM2_uc002sum.2_5'Flank	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	406	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						CACTGCAGGAGGTGGAGGAGA	0.572													7	9					0	0	0.003080	0	0
NEURL3	93082	broad.mit.edu	37	2	97165184	97165184	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:97165184G>A	uc010fhx.2	-	4		c.767C>T			NEURL3_uc002swc.2_RNA					Homo sapiens cDNA FLJ54814 complete cds.												0						CTGGCTGTGGGATCTGAGGCA	0.632													20	30					0	0	0.001882	0	0
ARID5A	10865	broad.mit.edu	37	2	97217569	97217569	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:97217569T>C	uc002swe.2	+	7	1404	c.1304T>C	c.(1303-1305)TTC>TCC	p.F435S	ARID5A_uc010yuq.1_Missense_Mutation_p.F383S|ARID5A_uc002swf.2_Missense_Mutation_p.F271S|ARID5A_uc002swg.2_Missense_Mutation_p.F383S	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	435					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						CCGCCCACCTTCCCCAGTAGC	0.662													12	16					0	0	0.004007	0	0
KIAA1310	55683	broad.mit.edu	37	2	97274369	97274369	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:97274369G>A	uc002swn.3	-	14	1763	c.1617C>T	c.(1615-1617)TCC>TCT	p.S539S	KIAA1310_uc002swh.3_Silent_p.S427S|KIAA1310_uc002swi.3_Silent_p.S440S|KIAA1310_uc002swj.3_RNA|KIAA1310_uc002swk.3_Silent_p.S452S|KIAA1310_uc010fhz.2_Silent_p.S333S|KIAA1310_uc002swl.3_Silent_p.S440S|KIAA1310_uc002swm.3_RNA|KIAA1310_uc010yur.1_Silent_p.S333S|KIAA1310_uc002swp.1_Silent_p.S440S	NM_001115016	NP_001108488	Q9P2N6	K1310_HUMAN	hypothetical protein LOC55683 isoform a	539											0						TCTTGGGACTGGAGGTGGGGC	0.522													12	41					0	0	0.003163	0	0
ANKRD36	375248	broad.mit.edu	37	2	97851184	97851184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:97851184G>A	uc010yva.1	+	30	2222	c.1978G>A	c.(1978-1980)GAC>AAC	p.D660N	ANKRD36_uc010fic.2_Missense_Mutation_p.D379N|ANKRD36_uc002sxo.2_Intron|ANKRD36_uc002sxp.3_RNA|ANKRD36_uc002sxq.1_Intron	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	660											0						GGCTACAAGTGACAAGACAGA	0.308													5	4					0	0	0.001984	0	0
CNGA3	1261	broad.mit.edu	37	2	99012639	99012639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:99012639G>A	uc002syt.2	+	8	1423	c.1006G>A	c.(1006-1008)GTC>ATC	p.V336I	CNGA3_uc002syu.2_Missense_Mutation_p.V318I|CNGA3_uc010fij.2_Missense_Mutation_p.V340I	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	336					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						AGACTCCTGGGTCTACCCAAA	0.483													32	39					0	0	0.003271	0	0
CNGA3	1261	broad.mit.edu	37	2	99013247	99013247	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:99013247C>T	uc002syt.2	+	8	2031	c.1614C>T	c.(1612-1614)TTC>TTT	p.F538F	CNGA3_uc002syu.2_Silent_p.F520F|CNGA3_uc010fij.2_Silent_p.F542F	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	538	cGMP.				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						TCACCCAGTTCGTGGTCCTCA	0.557													24	57					0	0	0.003330	0	0
C2orf55	343990	broad.mit.edu	37	2	99438729	99438729	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:99438729G>A	uc002szf.1	-	7	2301	c.2007C>T	c.(2005-2007)GCC>GCT	p.A669A		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	669											0						GCTCCTGGGCGGCTGGGCAGG	0.736													4	8					0	0	0.000602	0	0
LYG2	254773	broad.mit.edu	37	2	99860566	99860566	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:99860566C>T	uc002szw.1	-	5	529	c.416G>A	c.(415-417)TGG>TAG	p.W139*	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Nonsense_Mutation_p.W139*|LYG2_uc002szx.1_Nonsense_Mutation_p.W139*	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	139					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						TTTGCTATCCCAGGCACCGAC	0.433													17	21					0	0	0.000958	0	0
AFF3	3899	broad.mit.edu	37	2	100171180	100171180	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:100171180G>A	uc002tag.2	-	22	3536	c.3300C>T	c.(3298-3300)GCC>GCT	p.A1100A	AFF3_uc002taf.2_Silent_p.A1125A	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1100					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GGGCTTGGGCGGCTTTAGATG	0.512													14	24					0	0	0.003163	0	0
AFF3	3899	broad.mit.edu	37	2	100210137	100210137	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:100210137G>A	uc002tag.2	-	14	2222	c.1986C>T	c.(1984-1986)TCC>TCT	p.S662S	AFF3_uc002taf.2_Silent_p.S687S|AFF3_uc010fiq.1_Silent_p.S662S|AFF3_uc010yvr.1_Silent_p.S815S|AFF3_uc002tah.1_Silent_p.S687S	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	662					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TGAACTCCTTGGATTTGGGGA	0.612													39	65					0	0	0.003214	0	0
TBC1D8	11138	broad.mit.edu	37	2	101656758	101656758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:101656758G>A	uc010fiv.2	-	6	1048	c.917C>T	c.(916-918)TCG>TTG	p.S306L	TBC1D8_uc010yvw.1_Missense_Mutation_p.S321L|TBC1D8_uc002tau.3_Missense_Mutation_p.S63L	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	306	GRAM 2.				blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						CGTCCAGAGCGAACAGTCCAC	0.577													12	28					0	0	0.000978	0	0
IL18R1	8809	broad.mit.edu	37	2	103013104	103013104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:103013104G>A	uc002tbw.3	+	11	1534	c.1384G>A	c.(1384-1386)GAA>AAA	p.E462K	IL18R1_uc010ywc.1_Missense_Mutation_p.E461K|IL18R1_uc010ywd.1_Missense_Mutation_p.E306K|IL18R1_uc010fiy.2_Missense_Mutation_p.E462K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	462	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						TGGACTCCATGAAGCATTGGT	0.343													22	38					0	0	0.001523	0	0
IL18RAP	8807	broad.mit.edu	37	2	103039762	103039762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:103039762C>T	uc002tbx.2	+	3	509	c.25C>T	c.(25-27)CTT>TTT	p.L9F	IL18RAP_uc010fiz.2_5'UTR	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	9					cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CTGGATATTTCTTTGGCTTGT	0.408													54	77					0	0	0.003610	0	0
IL18RAP	8807	broad.mit.edu	37	2	103067478	103067478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:103067478G>A	uc002tbx.2	+	11	1865	c.1381G>A	c.(1381-1383)GGA>AGA	p.G461R	IL18RAP_uc010fiz.2_Missense_Mutation_p.G319R	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	461	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						GGCTCCAGGAGGAGGTAAGTC	0.403													24	33					0	0	0.003330	0	0
SLC9A4	389015	broad.mit.edu	37	2	103136374	103136374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:103136374G>A	uc002tbz.3	+	9	2235	c.1778G>A	c.(1777-1779)AGG>AAG	p.R593K		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	593	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GAGTCCATAAGGGACATTCTG	0.438													18	26					0	0	0.001882	0	0
SLC9A2	6549	broad.mit.edu	37	2	103281714	103281714	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:103281714C>T	uc002tca.2	+	3	1051	c.909C>T	c.(907-909)ACC>ACT	p.T303T		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	303	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CTCGATTCACCCATAATATCC	0.453													36	45					0	0	0.003755	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300637	103300637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:103300637C>T	uc002tca.2	+	5	1409	c.1267C>T	c.(1267-1269)CCC>TCC	p.P423S		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	423	Extracellular (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CCGGACCATTCCCCTGACCTT	0.463													27	46					0	0	0.005443	0	0
FHL2	2274	broad.mit.edu	37	2	106002913	106002913	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:106002913G>A	uc002tcu.2	-	2	398	c.61C>T	c.(61-63)CTG>TTG	p.L21L	FHL2_uc002tdc.2_5'UTR|FHL2_uc002tdd.2_Silent_p.L21L|FHL2_uc002tcv.2_Silent_p.L21L|FHL2_uc002tcw.2_Silent_p.L21L|FHL2_uc002tcx.2_Silent_p.L21L|FHL2_uc010fje.2_5'UTR|FHL2_uc002tcy.2_Silent_p.L21L|FHL2_uc002tcz.2_Silent_p.L131L|FHL2_uc002tda.2_RNA|FHL2_uc002tdb.2_Silent_p.L137L|FHL2_uc002tde.1_Silent_p.L114L	NM_201557	NP_963851	Q14192	FHL2_HUMAN	four and a half LIM domains 2	21	C4-type (Potential).				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription, DNA-dependent|response to hormone stimulus|transcription, DNA-dependent	actin cytoskeleton|focal adhesion|nucleus	androgen receptor binding|identical protein binding|transcription coactivator activity|zinc ion binding			ovary(1)	1						TCCTCCCGCAGGATGTACTTC	0.527													14	41					0	0	0.004007	0	0
RGPD3	653489	broad.mit.edu	37	2	107041161	107041161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:107041161G>A	uc010ywi.1	-	20	3319	c.3262C>T	c.(3262-3264)CTC>TTC	p.L1088F		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1088	RanBD1 1.				intracellular transport		binding			ovary(1)	1						TCGTTTTTGAGAATTTTTAAG	0.378													141	195					0	0	0.003610	0	0
RGPD3	653489	broad.mit.edu	37	2	107041256	107041256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:107041256C>T	uc010ywi.1	-	20	3224	c.3167G>A	c.(3166-3168)GGT>GAT	p.G1056D		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1056	RanBD1 1.				intracellular transport		binding			ovary(1)	1						AACTTTTTCACCTTCTTCTCC	0.383													72	203					0	0	0.003610	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107446626	107446626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:107446626G>A	uc002tdq.2	-	5	1333	c.1214C>T	c.(1213-1215)CCA>CTA	p.P405L	ST6GAL2_uc002tdr.2_Missense_Mutation_p.P405L|ST6GAL2_uc002tds.3_Missense_Mutation_p.P405L	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	405	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						AATGTAAAATGGCTGATTTGG	0.378													33	50					0	0	0.004289	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460303	107460303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:107460303G>A	uc002tdq.2	-	2	250	c.131C>T	c.(130-132)TCC>TTC	p.S44F	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S44F|ST6GAL2_uc002tds.3_Missense_Mutation_p.S44F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	44	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CTCCAGGAAGGAGAGGGAGCT	0.627													10	16					0	0	0.000443	0	0
RGPD4	285190	broad.mit.edu	37	2	108488225	108488225	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108488225G>A	uc010ywk.1	+	20	3847	c.3765G>A	c.(3763-3765)AGG>AGA	p.R1255R	RGPD4_uc002tdu.2_Silent_p.R442R|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1255					intracellular transport		binding			skin(2)	2						GTGATTTAAGGGAAGATGCTT	0.448													128	188					0	0	0.003610	0	0
RGPD4	285190	broad.mit.edu	37	2	108488470	108488470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108488470C>T	uc010ywk.1	+	20	4092	c.4010C>T	c.(4009-4011)CCT>CTT	p.P1337L	RGPD4_uc002tdu.2_Missense_Mutation_p.P524L|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1337	RanBD1 2.				intracellular transport		binding			skin(2)	2						TACTTTGAACCTGTTGTTCCT	0.398													70	110					0	0	0.003610	0	0
SLC5A7	60482	broad.mit.edu	37	2	108625095	108625095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108625095C>T	uc002tdv.2	+	8	1346	c.1070C>T	c.(1069-1071)TCC>TTC	p.S357F	SLC5A7_uc010ywm.1_Missense_Mutation_p.S110F|SLC5A7_uc010fjj.2_Missense_Mutation_p.S357F|SLC5A7_uc010ywn.1_Missense_Mutation_p.S244F	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	357	Extracellular (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TCAGCAAGTTCCATGTTTGCA	0.418													20	30					0	0	0.004656	0	0
SLC5A7	60482	broad.mit.edu	37	2	108627006	108627006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108627006C>T	uc002tdv.2	+	9	1708	c.1432C>T	c.(1432-1434)CCA>TCA	p.P478S	SLC5A7_uc010ywm.1_Missense_Mutation_p.P231S|SLC5A7_uc010fjj.2_Missense_Mutation_p.P478S|SLC5A7_uc010ywn.1_Missense_Mutation_p.P365S	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	478	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TCAGAAATTTCCATTTAAAAC	0.383													27	36					0	0	0.004656	0	0
SULT1C2	6819	broad.mit.edu	37	2	108910264	108910264	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108910264C>T	uc002tdy.2	+	2	594	c.141C>T	c.(139-141)TAC>TAT	p.Y47Y	SULT1C2_uc010ywp.1_5'UTR|SULT1C2_uc002tdx.2_Silent_p.Y47Y|SULT1C2_uc010ywq.1_Silent_p.Y47Y	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	47					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						TCTGCACCTACCCTAAAGCAG	0.542													13	15					0	0	0.001368	0	0
SULT1C2	6819	broad.mit.edu	37	2	108910803	108910803	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108910803A>G	uc002tdy.2	+	3	723	c.270A>G	c.(268-270)CAA>CAG	p.Q90Q	SULT1C2_uc010ywp.1_Missense_Mutation_p.N26S|SULT1C2_uc002tdx.2_Silent_p.Q90Q|SULT1C2_uc010ywq.1_Silent_p.Q90Q	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	90					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						GGCCACCCCAACCTTCTGGTG	0.313													35	33					0	0	0.004878	0	0
SULT1C4	27233	broad.mit.edu	37	2	108994910	108994910	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108994910G>A	uc002tea.1	+	1	490	c.117G>A	c.(115-117)TGG>TGA	p.W39*	SULT1C4_uc002tdz.2_Nonsense_Mutation_p.W39*|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Nonsense_Mutation_p.W39*	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	39					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						ATAAGATCTGGAACTTCCAAG	0.473													69	95					0	0	0.003610	0	0
SULT1C4	27233	broad.mit.edu	37	2	108998244	108998244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108998244G>A	uc002tea.1	+	2	569	c.196G>A	c.(196-198)GAA>AAA	p.E66K	SULT1C4_uc002tdz.2_Missense_Mutation_p.E66K|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.E66K	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	66					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						GGAGATAGTGGAATTAATACA	0.373													20	21					0	0	0.001216	0	0
SULT1C4	27233	broad.mit.edu	37	2	108999892	108999892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:108999892G>A	uc002tea.1	+	5	914	c.541G>A	c.(541-543)GAA>AAA	p.E181K	SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.E106K	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	181					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						CTCCTGGCATGAACATGTGAA	0.468													18	23					0	0	0.001216	0	0
RANBP2	5903	broad.mit.edu	37	2	109383802	109383802	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:109383802C>T	uc002tem.3	+	20	6933	c.6807C>T	c.(6805-6807)TTC>TTT	p.F2269F		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2269					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GATTTAACTTCAGTTTTAAAT	0.408													119	173					0	0	0.003610	0	0
CCDC138	165055	broad.mit.edu	37	2	109404498	109404498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:109404498C>T	uc002ten.1	+	2	164	c.104C>T	c.(103-105)TCA>TTA	p.S35L	CCDC138_uc002teo.1_Missense_Mutation_p.S35L|CCDC138_uc002tep.1_5'UTR|CCDC138_uc010fjm.1_5'UTR	NM_144978	NP_659415	Q96M89	CC138_HUMAN	coiled-coil domain containing 138	35											0						TATGATTTTTCAAATTTTTAT	0.194													12	21					0	0	0.001368	0	0
ANAPC1	64682	broad.mit.edu	37	2	112536329	112536329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:112536329G>A	uc002thi.2	-	45	5555	c.5308C>T	c.(5308-5310)CTC>TTC	p.L1770F		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	1770					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						GAAGAAAAGAGATCCAGAATT	0.393													22	77					0	0	0.001485	0	0
ANAPC1	64682	broad.mit.edu	37	2	112614445	112614445	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:112614445C>T	uc002thi.2	-	12	1624	c.1377G>A	c.(1375-1377)GAG>GAA	p.E459E		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	459					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						TATCATTACTCTCTtgaaact	0.229													7	66					0	0	0.004482	0	0
MERTK	10461	broad.mit.edu	37	2	112751959	112751959	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:112751959G>A	uc002thk.1	+	9	1550	c.1428G>A	c.(1426-1428)GTG>GTA	p.V476V	MERTK_uc002thl.1_Silent_p.V300V	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	476	Fibronectin type-III 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GTGATCCAGTGAAAATATTTA	0.537													33	44					0	0	0.003271	0	0
CKAP2L	150468	broad.mit.edu	37	2	113518340	113518340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:113518340G>A	uc002tie.2	-	3	185	c.106C>T	c.(106-108)CCT>TCT	p.P36S	CKAP2L_uc002tif.2_5'UTR|CKAP2L_uc010yxp.1_5'UTR|CKAP2L_uc010yxq.1_5'UTR	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	36						centrosome					0						TTTAGATAAGGCCTATAAAAG	0.274													29	70					0	0	0.002836	0	0
IL1F7	27178	broad.mit.edu	37	2	113675276	113675276	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:113675276C>T	uc002tij.2	+	4	372	c.330C>T	c.(328-330)CTC>CTT	p.L110L	IL1F7_uc002tik.2_Silent_p.L89L|IL1F7_uc002til.2_Silent_p.L70L|IL1F7_uc002tim.2_Silent_p.L49L|IL1F7_uc002tin.2_Silent_p.L84L	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	110					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						GTCCGATTCTCCTGGGGGTCT	0.473													51	78					0	0	0.003610	0	0
IL1F7	27178	broad.mit.edu	37	2	113675341	113675341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:113675341C>T	uc002tij.2	+	4	437	c.395C>T	c.(394-396)TCC>TTC	p.S132F	IL1F7_uc002tik.2_Missense_Mutation_p.S111F|IL1F7_uc002til.2_Missense_Mutation_p.S92F|IL1F7_uc002tim.2_Missense_Mutation_p.S71F|IL1F7_uc002tin.2_Missense_Mutation_p.S106F	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	132					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						AGTCATCCATCCCTTCAGCTG	0.498													30	38					0	0	0.002445	0	0
IL1RN	3557	broad.mit.edu	37	2	113885270	113885270	+	Silent	SNP	G	A	A	rs2232353		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:113885270G>A	uc002tjb.2	+	1	133	c.69G>A	c.(67-69)ACG>ACA	p.T23T	IL1RN_uc002tix.1_RNA|IL1RN_uc002tiy.2_5'UTR|IL1RN_uc002tiz.2_Silent_p.T26T|IL1RN_uc002tja.2_Silent_p.T5T	NM_173842	NP_776214	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 1	23					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	ATTCAGAGACGATCTGCCGAC	0.542									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				18	22					0	0	0.001882	0	0
DPP10	57628	broad.mit.edu	37	2	116497382	116497382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:116497382G>A	uc002tla.1	+	9	1222	c.765G>A	c.(763-765)ATG>ATA	p.M255I	DPP10_uc002tlb.1_Missense_Mutation_p.M205I|DPP10_uc002tlc.1_Missense_Mutation_p.M251I|DPP10_uc002tle.2_Missense_Mutation_p.M259I|DPP10_uc002tlf.1_Missense_Mutation_p.M248I	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	255	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CCTTCCTGATGATAAATGACT	0.453													37	42					0	0	0.005524	0	0
CCDC93	54520	broad.mit.edu	37	2	118698861	118698861	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:118698861G>A	uc002tlj.2	-	19	1552	c.1426C>T	c.(1426-1428)CGA>TGA	p.R476*	CCDC93_uc010fld.1_Nonsense_Mutation_p.R476*	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	476										large_intestine(1)|ovary(1)	2						GCTATTTCTCGATTTCTTCGA	0.443													20	29					0	0	0.001882	0	0
MARCO	8685	broad.mit.edu	37	2	119727733	119727733	+	Silent	SNP	C	T	T	rs75633112		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:119727733C>T	uc002tln.1	+	3	375	c.243C>T	c.(241-243)TTC>TTT	p.F81F	MARCO_uc010yyf.1_Silent_p.F3F	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	81	Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGATGTATTTCCTCAATGACA	0.582													21	37					0	0	0.005443	0	0
TMEM37	140738	broad.mit.edu	37	2	120194827	120194827	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:120194827C>T	uc002tly.2	+	2	418	c.384C>T	c.(382-384)TCC>TCT	p.S128S		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	128						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						TCATGGGTTCCATCCTCCTCC	0.577													56	90					0	0	0.003610	0	0
GLI2	2736	broad.mit.edu	37	2	121745959	121745959	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:121745959C>T	uc010flp.2	+	13	2499	c.2469C>T	c.(2467-2469)TCC>TCT	p.S823S	GLI2_uc002tmq.1_Silent_p.S495S|GLI2_uc002tmr.1_Silent_p.S478S|GLI2_uc002tmt.3_Silent_p.S495S|GLI2_uc002tmu.3_Silent_p.S478S	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	823	Ser-rich.				axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GCCGCCGCTCCTCCGGCATCT	0.721													4	4					0	0	0.000602	0	0
CLASP1	23332	broad.mit.edu	37	2	122204918	122204918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:122204918G>A	uc002tnc.2	-	19	2297	c.1907C>T	c.(1906-1908)TCC>TTC	p.S636F	CLASP1_uc002tna.2_5'UTR|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.S636F|CLASP1_uc010yza.1_Missense_Mutation_p.S636F|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tng.1_Missense_Mutation_p.S636F	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	636	Ser-rich.				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					GTTACCTAAGGATGCGTATGA	0.522													5	6					0	0	0.000602	0	0
CNTNAP5	129684	broad.mit.edu	37	2	124999873	124999873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:124999873G>A	uc002tno.2	+	3	648	c.284G>A	c.(283-285)GGA>GAA	p.G95E	CNTNAP5_uc010flu.2_Missense_Mutation_p.G95E	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	95	F5/8 type C.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GCCACGCAGGGAAGATACGGA	0.527													8	2					0	0	0.003080	0	0
PROC	5624	broad.mit.edu	37	2	128186197	128186197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:128186197G>A	uc002tok.2	+	9	1134	c.1061G>A	c.(1060-1062)AGA>AAA	p.R354K	PROC_uc002tol.2_Missense_Mutation_p.R375K|PROC_uc010yzi.1_Missense_Mutation_p.R410K|PROC_uc010yzj.1_Missense_Mutation_p.R249K|PROC_uc010yzk.1_Missense_Mutation_p.R409K|PROC_uc002tom.2_Missense_Mutation_p.R388K	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	354	Peptidase S1.				blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	GAGGCCAAGAGAAACCGCACC	0.602													41	76					0	0	0.003610	0	0
WDR33	55339	broad.mit.edu	37	2	128525862	128525862	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:128525862G>A	uc002tpg.1	-	4	462	c.279C>T	c.(277-279)GTC>GTT	p.V93V	WDR33_uc002tph.1_Silent_p.V93V|WDR33_uc002tpi.1_Silent_p.V93V	NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	93					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CTATAGGTGGGACCAGCTACA	0.358													6	3					0	0	0.001168	0	0
SAP130	79595	broad.mit.edu	37	2	128747391	128747391	+	Silent	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:128747391C>G	uc002tpp.2	-	13	1737	c.1605G>C	c.(1603-1605)GGG>GGC	p.G535G	SAP130_uc002tpn.2_Silent_p.G296G|SAP130_uc002tpo.2_Silent_p.G280G|SAP130_uc010fmd.2_Silent_p.G535G|SAP130_uc002tpq.1_Silent_p.G508G	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	535					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		TAGACGCTACCCCAACACCAG	0.488													14	21					0	0	0.002450	0	0
UGGT1	56886	broad.mit.edu	37	2	128900740	128900740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:128900740C>T	uc002tps.2	+	17	1970	c.1792C>T	c.(1792-1794)CCG>TCG	p.P598S	UGGT1_uc010fme.1_Missense_Mutation_p.P473S|UGGT1_uc002tpr.2_Missense_Mutation_p.P574S	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	598					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						GAAGAAATATCCGTATGTAGA	0.358													37	46					0	0	0.005524	0	0
POTEF	728378	broad.mit.edu	37	2	130877705	130877705	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:130877705G>A	uc010fmh.2	-	3	784	c.384C>T	c.(382-384)TTC>TTT	p.F128F		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	128						cell cortex	ATP binding			skin(3)|ovary(2)	5						TGGGCTCCATGAAGGCACTGT	0.587													18	25					0	0	0.003954	0	0
POTEF	728378	broad.mit.edu	37	2	130878001	130878001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:130878001G>A	uc010fmh.2	-	3	488	c.88C>T	c.(88-90)CGT>TGT	p.R30C		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	30						cell cortex	ATP binding			skin(3)|ovary(2)	5						GGGAAGCAACGGCAGCACCAC	0.552													49	74					0	0	0.003610	0	0
GPR148	344561	broad.mit.edu	37	2	131487351	131487351	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:131487351C>T	uc002trv.1	+	1	629	c.627C>T	c.(625-627)ACC>ACT	p.T209T		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	209	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					GCATGGGCACCCAGCCGGGAT	0.547													29	54					0	0	0.003755	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131704127	131704127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:131704127C>T	uc002tsa.1	+	4	866	c.346C>T	c.(346-348)CCT>TCT	p.P116S	ARHGEF4_uc010fmw.1_Missense_Mutation_p.P762S|ARHGEF4_uc002tsb.1_Missense_Mutation_p.P116S|ARHGEF4_uc010fmx.1_Missense_Mutation_p.P116S|ARHGEF4_uc002trz.1_Missense_Mutation_p.P762S	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	116	ABR (APC-binding region) domain.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		TTTGAATCTCCCTAGAAGAAG	0.522													27	48					0	0	0.004656	0	0
POTEE	445582	broad.mit.edu	37	2	131976461	131976461	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:131976461G>A	uc002tsn.2	+	1	538	c.486G>A	c.(484-486)AGG>AGA	p.R162R	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	162							ATP binding				0						TCATGCTCAGGGACACTGACG	0.587													27	116					0	0	0.004878	0	0
POTEE	445582	broad.mit.edu	37	2	132021551	132021552	+	Silent	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:132021551_132021552CC>TT	uc002tsn.2	+	15	2575_2576	c.2523_2524CC>TT	c.(2521-2526)TCCCTG>TCTTTG	p.841_842SL>SL	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.441_442SL>SL|POTEE_uc002tsl.2_Silent_p.423_424SL>SL|POTEE_uc010fmy.1_Silent_p.305_306SL>SL	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	841_842	Actin-like.						ATP binding				0						CCGTGCCGTCCCTGTACACCTC	0.609													40	90					0	0	0.004672	0	0
LOC150776	150776	broad.mit.edu	37	2	132277885	132277885	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:132277885C>T	uc002tsz.3	+	3	912	c.465C>T	c.(463-465)GCC>GCT	p.A155A	LOC150776_uc002tsy.3_RNA					Homo sapiens cDNA FLJ41352 fis, clone BRAWH2014645.												0						TCTTCGTGGCCTCTCTGTTCT	0.682													3	0					0	0	0.000248	0	0
NCRNA00164	554226	broad.mit.edu	37	2	132905720	132905720	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:132905720C>T	uc002tti.3	-	7		c.1171G>A			NCRNA00164_uc002ttj.3_RNA	NR_027019				Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:5169389), with apparent retained intron.												0						ATCAGGTGTTCTTTCCACCAA	0.413													7	16					0	0	0.000673	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541233	133541233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:133541233G>A	uc002ttp.2	-	14	3525	c.3151C>T	c.(3151-3153)CGC>TGC	p.R1051C	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1051							protein binding				0						AGTGTTTGGCGAGGAGAGGTT	0.557													25	25					0	0	0.003954	0	0
RAB3GAP1	22930	broad.mit.edu	37	2	135891593	135891593	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:135891593C>T	uc002tuj.2	+	15	1514	c.1489C>T	c.(1489-1491)CTG>TTG	p.L497L	RAB3GAP1_uc010fnf.2_Silent_p.L497L|RAB3GAP1_uc010fng.2_Silent_p.L322L|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	497						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		AAACAACTTTCTGATTCCAGG	0.313													31	41					0	0	0.003271	0	0
ZRANB3	84083	broad.mit.edu	37	2	135988470	135988470	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:135988470G>A	uc002tum.2	-	13	1684	c.1567C>T	c.(1567-1569)CGA>TGA	p.R523*	ZRANB3_uc002tuk.2_Nonsense_Mutation_p.R66*|ZRANB3_uc002tul.2_Nonsense_Mutation_p.R523*	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	523						intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		AAAAATGATCGAATATCATGC	0.353													18	34					0	0	0.000958	0	0
UBXN4	23190	broad.mit.edu	37	2	136533860	136533860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:136533860C>T	uc002tur.2	+	10	1303	c.992C>T	c.(991-993)TCC>TTC	p.S331F	UBXN4_uc002tus.2_Missense_Mutation_p.S97F|UBXN4_uc002tut.2_5'UTR	NM_014607	NP_055422	Q92575	UBXN4_HUMAN	UBX domain containing 2	331	UBX.|Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|nuclear envelope	protein binding			skin(2)	2						GATGGTTCTTCCTTTACAAAT	0.358													25	37					0	0	0.002445	0	0
LCT	3938	broad.mit.edu	37	2	136566152	136566152	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:136566152C>T	uc002tuu.1	-	8	3776	c.3765G>A	c.(3763-3765)AGG>AGA	p.R1255R		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1255	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGTTCAGCAGCCTTCGCGTCC	0.572													25	50					0	0	0.005443	0	0
LCT	3938	broad.mit.edu	37	2	136570403	136570403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:136570403G>A	uc002tuu.1	-	7	1842	c.1831C>T	c.(1831-1833)CCA>TCA	p.P611S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	611	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GGCCTCTCTGGAGACAGGGGT	0.587													8	21					0	0	0.000673	0	0
THSD7B	80731	broad.mit.edu	37	2	137814029	137814029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:137814029G>A	uc002tva.1	+	2	86	c.86G>A	c.(85-87)GGA>GAA	p.G29E	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGTCCCGGAGGAGTCCAGAGT	0.493													25	27					0	0	0.005443	0	0
THSD7B	80731	broad.mit.edu	37	2	138320903	138320903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:138320903G>A	uc002tva.1	+	15	3164	c.3164G>A	c.(3163-3165)GGA>GAA	p.G1055E	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGTGGAGGAGGAACACAATCT	0.413													13	24					0	0	0.001368	0	0
LRP1B	53353	broad.mit.edu	37	2	141110608	141110608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141110608G>A	uc002tvj.1	-	76	12536	c.11564C>T	c.(11563-11565)TCC>TTC	p.S3855F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3855	Extracellular (Potential).|EGF-like 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACATTGATGGGAACATGTGCC	0.358										TSP Lung(27;0.18)			46	76					0	0	0.003610	0	0
LRP1B	53353	broad.mit.edu	37	2	141135811	141135812	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141135811_141135812CC>TT	uc002tvj.1	-	68	11547_11548	c.10575_10576GG>AA	c.(10573-10578)GGGGAC>GGAAAC	p.D3526N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3526	Extracellular (Potential).|LDL-receptor class A 26.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GAAACACAGTCCCCATTGGCAC	0.396										TSP Lung(27;0.18)			17	38					0	0	0.004672	0	0
LRP1B	53353	broad.mit.edu	37	2	141260580	141260580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141260580G>A	uc002tvj.1	-	54	9586	c.8614C>T	c.(8614-8616)CCT>TCT	p.P2872S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2872	Extracellular (Potential).|LDL-receptor class A 19.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GAATGGTCAGGACAGTCAAAG	0.398										TSP Lung(27;0.18)			25	37					0	0	0.001061	0	0
LRP1B	53353	broad.mit.edu	37	2	141294168	141294168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141294168C>T	uc002tvj.1	-	46	8596	c.7624G>A	c.(7624-7626)GAA>AAA	p.E2542K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2542	Extracellular (Potential).|LDL-receptor class A 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGCAGTTTTTCATCTGATTTA	0.418										TSP Lung(27;0.18)			29	39					0	0	0.001786	0	0
LRP1B	53353	broad.mit.edu	37	2	141457988	141457988	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141457988G>A	uc002tvj.1	-	41	7602	c.6630C>T	c.(6628-6630)TCC>TCT	p.S2210S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2210	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCCTTATTGGGGAATTTAAAT	0.343										TSP Lung(27;0.18)			41	72					0	0	0.001706	0	0
LRP1B	53353	broad.mit.edu	37	2	141459789	141459789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141459789G>A	uc002tvj.1	-	39	7195	c.6223C>T	c.(6223-6225)CGC>TGC	p.R2075C		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2075	Extracellular (Potential).|LDL-receptor class B 22.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACCATCTCGCGATTCCCTCCA	0.403										TSP Lung(27;0.18)			40	67					0	0	0.002852	0	0
LRP1B	53353	broad.mit.edu	37	2	141474303	141474303	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141474303G>A	uc002tvj.1	-	36	6813	c.5841C>T	c.(5839-5841)ATC>ATT	p.I1947I		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1947	Extracellular (Potential).|LDL-receptor class B 19.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CATTGGTAATGATATCTTCTT	0.383										TSP Lung(27;0.18)			48	56					0	0	0.003610	0	0
LRP1B	53353	broad.mit.edu	37	2	141533700	141533700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141533700G>A	uc002tvj.1	-	33	6439	c.5467C>T	c.(5467-5469)CAT>TAT	p.H1823Y		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1823	Extracellular (Potential).|LDL-receptor class B 18.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACTTTCATATGAACTACCCCA	0.428										TSP Lung(27;0.18)			16	36					0	0	0.000743	0	0
LRP1B	53353	broad.mit.edu	37	2	141607715	141607715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141607715C>T	uc002tvj.1	-	29	5867	c.4895G>A	c.(4894-4896)CGA>CAA	p.R1632Q	LRP1B_uc010fnl.1_Missense_Mutation_p.R814Q	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1632	Extracellular (Potential).|LDL-receptor class B 14.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AATAAAAGCTCGTTTAATGGT	0.333										TSP Lung(27;0.18)			35	54					0	0	0.004878	0	0
LRP1B	53353	broad.mit.edu	37	2	141625219	141625219	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141625219G>A	uc002tvj.1	-	27	5491	c.4519C>T	c.(4519-4521)CAG>TAG	p.Q1507*	LRP1B_uc010fnl.1_Nonsense_Mutation_p.Q689*	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1507	Extracellular (Potential).|LDL-receptor class B 13.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTGGTTTTCTGAATCACACTG	0.473										TSP Lung(27;0.18)			40	49					0	0	0.002222	0	0
LRP1B	53353	broad.mit.edu	37	2	141777515	141777515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141777515C>T	uc002tvj.1	-	12	2918	c.1946G>A	c.(1945-1947)GGA>GAA	p.G649E	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	649	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CACCACAATTCCTCTGGGATG	0.358										TSP Lung(27;0.18)			25	39					0	0	0.001271	0	0
LRP1B	53353	broad.mit.edu	37	2	141777596	141777596	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141777596T>A	uc002tvj.1	-	12	2837	c.1865A>T	c.(1864-1866)AAA>ATA	p.K622I	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	622	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATTAATGGTTTTCCTATGGCC	0.413										TSP Lung(27;0.18)			44	62					0	0	0.003214	0	0
LRP1B	53353	broad.mit.edu	37	2	141806610	141806610	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:141806610G>A	uc002tvj.1	-	11	2706	c.1734C>T	c.(1732-1734)TTC>TTT	p.F578F	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	578	Extracellular (Potential).|LDL-receptor class B 5.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGCCAATTAGGAAACTGGTGG	0.428										TSP Lung(27;0.18)			33	68					0	0	0.002445	0	0
LRP1B	53353	broad.mit.edu	37	2	142237992	142237992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:142237992C>T	uc002tvj.1	-	3	1288	c.316G>A	c.(316-318)GGG>AGG	p.G106R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	106	Extracellular (Potential).|LDL-receptor class A 2.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCGTCATACCCATCTGGGCAG	0.403										TSP Lung(27;0.18)			14	18					0	0	0.004007	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147345937	147345937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:147345937G>A	uc002twf.3	+	1	1313	c.397G>A	c.(397-399)GAA>AAA	p.E133K		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						TCTCCAGAAAGAATTTTCTCC	0.388													8	17					0	0	0.003080	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147346064	147346064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:147346064G>A	uc002twf.3	+	1	1440	c.524G>A	c.(523-525)GGT>GAT	p.G175D		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						GCAATGAACGGTAAAATTGTG	0.453													4	7					0	0	0.000248	0	0
MBD5	55777	broad.mit.edu	37	2	149247034	149247034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:149247034C>T	uc002twm.3	+	12	4122	c.3134C>T	c.(3133-3135)CCA>CTA	p.P1045L	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P1045L|MBD5_uc002two.2_Missense_Mutation_p.P303L|MBD5_uc002twp.2_Missense_Mutation_p.P95L	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1045						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CCTGAGAATCCAAACACTACA	0.473													18	26					0	0	0.000958	0	0
KIF5C	3800	broad.mit.edu	37	2	149866805	149866805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:149866805C>T	uc010zbu.1	+	24	3075	c.2707C>T	c.(2707-2709)CGT>TGT	p.R903C	KIF5C_uc002tws.1_RNA|KIF5C_uc002twu.1_Missense_Mutation_p.R185C	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	903	|Globular.				microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		GGAGGTGGATCGTATCAAGGA	0.647													4	2					0	0	0.001984	0	0
LYPD6B	130576	broad.mit.edu	37	2	150071133	150071133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:150071133C>T	uc002twv.1	+	7	934	c.533C>T	c.(532-534)GCC>GTC	p.A178V	LYPD6B_uc002tww.1_Missense_Mutation_p.A140V|LYPD6B_uc002twx.1_Missense_Mutation_p.A140V	NM_177964	NP_808879	Q8NI32	LPD6B_HUMAN	LY6/PLAUR domain containing 6B	154						anchored to membrane|plasma membrane					0						GCAGTGTTTGCCGTAATGCAC	0.483													41	64					0	0	0.002852	0	0
NMI	9111	broad.mit.edu	37	2	152138507	152138507	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152138507G>A	uc002txi.2	-	3	462	c.132C>T	c.(130-132)ATC>ATT	p.I44I	NMI_uc010zbx.1_Silent_p.I44I|NMI_uc002txj.2_Intron	NM_004688	NP_004679	Q13287	NMI_HUMAN	N-myc and STAT interactor	44					inflammatory response|JAK-STAT cascade|transcription from RNA polymerase II promoter	cytoplasm|nucleus	nucleotide binding|protein binding|transcription cofactor activity				0				BRCA - Breast invasive adenocarcinoma(221;0.0571)		CAAGCTTTTGGATCTCCTTCT	0.318													27	48					0	0	0.001786	0	0
RIF1	55183	broad.mit.edu	37	2	152325177	152325177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152325177C>T	uc002txm.2	+	33	6978	c.6848C>T	c.(6847-6849)TCC>TTC	p.S2283F	RIF1_uc002txl.2_Missense_Mutation_p.S2257F|RIF1_uc002txn.2_Missense_Mutation_p.S2257F|RIF1_uc002txo.2_Missense_Mutation_p.S2257F|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	2283	Interaction with condensed chromosomes in telophase.				cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		GCCAAAGAATCCATACCATGC	0.373													26	53					0	0	0.001061	0	0
NEB	4703	broad.mit.edu	37	2	152352869	152352869	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152352869T>A	uc010fnx.2	-	140	19030	c.18839A>T	c.(18838-18840)GAA>GTA	p.E6280V	NEB_uc002txr.2_Missense_Mutation_p.E2672V|RIF1_uc002txp.2_Intron|NEB_uc010zbz.1_Missense_Mutation_p.E80V|NEB_uc002txq.2_Missense_Mutation_p.E159V|NEB_uc010zca.1_Missense_Mutation_p.E111V|NEB_uc010zcb.1_Missense_Mutation_p.E80V	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6280	Nebulin 172.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GCCCATGTTTTCTTTGTATAA	0.408													9	12					0	0	0.001368	0	0
NEB	4703	broad.mit.edu	37	2	152397999	152397999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152397999G>A	uc010fnx.2	-	108	15732	c.15541C>T	c.(15541-15543)CTT>TTT	p.L5181F	NEB_uc002txr.2_Missense_Mutation_p.L1604F	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5181	Nebulin 141.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GCTCTTAAAAGATCAGGAGTA	0.468													39	69					0	0	0.003610	0	0
NEB	4703	broad.mit.edu	37	2	152410366	152410366	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152410366C>T	uc010fnx.2	-	98	14690	c.14499G>A	c.(14497-14499)AGG>AGA	p.R4833R	NEB_uc002txr.2_Silent_p.R1256R	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4833	Nebulin 132.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTGTGACTTTCCTGACGTGAT	0.552													24	23					0	0	0.002780	0	0
NEB	4703	broad.mit.edu	37	2	152420200	152420200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152420200C>T	uc010fnx.2	-	91	13701	c.13510G>A	c.(13510-13512)GGT>AGT	p.G4504S	NEB_uc002txr.2_Missense_Mutation_p.G927S	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4504					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AGGTAGTGACCTTTCTGCTTC	0.438													97	153					0	0	0.003610	0	0
NEB	4703	broad.mit.edu	37	2	152421650	152421650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152421650C>T	uc010fnx.2	-	89	13467	c.13276G>A	c.(13276-13278)GAA>AAA	p.E4426K	NEB_uc002txr.2_Missense_Mutation_p.E849K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4426	Nebulin 121.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTAAATGTTTCTTTATATTTT	0.289													6	12					0	0	0.001984	0	0
NEB	4703	broad.mit.edu	37	2	152422268	152422268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152422268G>A	uc010fnx.2	-	87	13311	c.13120C>T	c.(13120-13122)CAT>TAT	p.H4374Y	NEB_uc002txr.2_Missense_Mutation_p.H797Y	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4374	Nebulin 120.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ACCCTTACATGGTCCACAGAA	0.493													10	8					0	0	0.000443	0	0
NEB	4703	broad.mit.edu	37	2	152483671	152483671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152483671G>A	uc010fnx.2	-	66	9654	c.9463C>T	c.(9463-9465)CCC>TCC	p.P3155S		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3155	Nebulin 86.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GACCCAATGGGGACCCAGCCA	0.443													22	19					0	0	0.002780	0	0
NEB	4703	broad.mit.edu	37	2	152500515	152500515	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:152500515C>T	uc010fnx.2	-	57	7964	c.7773G>A	c.(7771-7773)AAG>AAA	p.K2591K		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2591	Nebulin 69.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCTCAAAGTCCTTCTTGTACT	0.542													104	139					0	0	0.003610	0	0
FMNL2	114793	broad.mit.edu	37	2	153482066	153482066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:153482066G>A	uc002tye.2	+	16	2319	c.1952G>A	c.(1951-1953)CGA>CAA	p.R651Q	FMNL2_uc010fob.2_Missense_Mutation_p.R107Q|FMNL2_uc002tyf.2_Missense_Mutation_p.R100Q	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	651	FH2.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						GATGATGAGCGAATTCTGGAG	0.438													26	36					0	0	0.001512	0	0
FMNL2	114793	broad.mit.edu	37	2	153484914	153484914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:153484914G>A	uc002tye.2	+	18	2634	c.2267G>A	c.(2266-2268)AGG>AAG	p.R756K	FMNL2_uc010fob.2_Missense_Mutation_p.R212K|FMNL2_uc002tyf.2_Missense_Mutation_p.R205K	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	756	FH2.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						GAGCGGGAAAGGAAGCCTCTG	0.468													39	54					0	0	0.001485	0	0
GALNT5	11227	broad.mit.edu	37	2	158140883	158140883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:158140883C>T	uc002tzg.2	+	2	1799	c.1544C>T	c.(1543-1545)TCT>TTT	p.S515F	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	515	Catalytic subdomain A.|Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						CTCCTGAGATCTGTTCACAGT	0.488													27	36					0	0	0.005443	0	0
PKP4	8502	broad.mit.edu	37	2	159459601	159459601	+	Missense_Mutation	SNP	C	T	T	rs141436976	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:159459601C>T	uc002tzv.2	+	4	525	c.265C>T	c.(265-267)CCT>TCT	p.P89S	PKP4_uc002tzt.1_5'UTR|PKP4_uc002tzu.2_Missense_Mutation_p.P89S|PKP4_uc002tzw.2_Missense_Mutation_p.P89S|PKP4_uc002tzx.2_5'UTR|PKP4_uc002tzy.1_5'UTR|PKP4_uc002tzz.1_Missense_Mutation_p.P89S|PKP4_uc002uaa.2_5'UTR	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	89					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						GAAGTCATTTCCTTGGAGATC	0.274										HNSCC(62;0.18)			40	75					0	0	0.003610	0	0
TANC1	85461	broad.mit.edu	37	2	160028664	160028664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:160028664C>T	uc002uag.2	+	11	1658	c.1384C>T	c.(1384-1386)CCG>TCG	p.P462S	TANC1_uc010fol.1_Missense_Mutation_p.P356S|TANC1_uc010zcm.1_Missense_Mutation_p.P454S|TANC1_uc010fom.1_Missense_Mutation_p.P268S	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	462						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						TCATTTCACTCCGTTGCTTTC	0.463													20	40					0	0	0.002780	0	0
LY75	4065	broad.mit.edu	37	2	160676288	160676288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:160676288C>T	uc002ubc.3	-	29	4171	c.4102G>A	c.(4102-4104)GAA>AAA	p.E1368K	LY75_uc002ubb.3_Missense_Mutation_p.E1368K|LY75_uc010fos.2_Missense_Mutation_p.E1368K	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1368	Extracellular (Potential).|C-type lectin 8.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TAAACTGCTTCTTCAATAACT	0.343													44	90					0	0	0.003610	0	0
LY75	4065	broad.mit.edu	37	2	160714961	160714961	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:160714961G>A	uc002ubc.3	-	16	2364	c.2295C>T	c.(2293-2295)GGC>GGT	p.G765G	LY75_uc002ubb.3_Silent_p.G765G|LY75_uc010fos.2_Silent_p.G765G	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	765	Extracellular (Potential).|C-type lectin 4.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		AGAAATGCCAGCCTCTTCGCC	0.368													27	33					0	0	0.001061	0	0
SLC4A10	57282	broad.mit.edu	37	2	162751198	162751198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:162751198G>A	uc002ubx.3	+	11	1388	c.1204G>A	c.(1204-1206)GAT>AAT	p.D402N	SLC4A10_uc010fpa.1_Missense_Mutation_p.D414N|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.D372N|SLC4A10_uc010zcs.1_Missense_Mutation_p.D383N	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	402	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						GGTATTTCATGATGTTGCCTA	0.308													13	13					0	0	0.001368	0	0
KCNH7	90134	broad.mit.edu	37	2	163302840	163302840	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:163302840G>A	uc002uch.1	-	7	1454	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I	KCNH7_uc002uci.2_Silent_p.I407I	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	414	Helical; Name=Segment S1; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CCAACAGCAGGATAAGCCAGT	0.453													18	30					0	0	0.001216	0	0
KCNH7	90134	broad.mit.edu	37	2	163374315	163374315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:163374315C>T	uc002uch.1	-	4	1029	c.817G>A	c.(817-819)GCA>ACA	p.A273T	KCNH7_uc002uci.2_Missense_Mutation_p.A273T	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	273	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	ACCGAAGATGCTCTCCGTATA	0.463													27	41					0	0	0.001786	0	0
COBLL1	22837	broad.mit.edu	37	2	165550945	165550945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:165550945G>A	uc010zcw.1	-	15	3396	c.3272C>T	c.(3271-3273)TCA>TTA	p.S1091L	COBLL1_uc002ucp.2_Missense_Mutation_p.S1024L|COBLL1_uc002ucq.2_Missense_Mutation_p.S986L|COBLL1_uc010zcx.1_Missense_Mutation_p.S1032L|COBLL1_uc002ucn.2_Missense_Mutation_p.S452L|COBLL1_uc002uco.2_Missense_Mutation_p.S755L	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	1062										ovary(2)|pancreas(1)	3						AGCAAACGGTGAAGGACCAGA	0.478													20	28					0	0	0.001216	0	0
COBLL1	22837	broad.mit.edu	37	2	165551680	165551680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:165551680G>A	uc010zcw.1	-	15	2661	c.2537C>T	c.(2536-2538)TCC>TTC	p.S846F	COBLL1_uc002ucp.2_Missense_Mutation_p.S779F|COBLL1_uc002ucq.2_Missense_Mutation_p.S741F|COBLL1_uc010zcx.1_Missense_Mutation_p.S787F|COBLL1_uc002ucn.2_Missense_Mutation_p.S207F|COBLL1_uc002uco.2_Missense_Mutation_p.S510F	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	817										ovary(2)|pancreas(1)	3						TATTTCCAAGGATTTGGGAGG	0.378													69	53					0	0	0.003610	0	0
SCN3A	6328	broad.mit.edu	37	2	165950958	165950958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:165950958C>T	uc002ucx.2	-	26	4954	c.4462G>A	c.(4462-4464)GAA>AAA	p.E1488K	SCN3A_uc010zcy.1_5'Flank|SCN3A_uc002ucy.2_Missense_Mutation_p.E1439K|SCN3A_uc002ucz.2_Missense_Mutation_p.E1439K	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1488						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTTTTCTGTTCCTCTGTCATA	0.343													83	132					0	0	0.003610	0	0
SCN3A	6328	broad.mit.edu	37	2	165970408	165970408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:165970408C>T	uc002ucx.2	-	20	4079	c.3587G>A	c.(3586-3588)CGA>CAA	p.R1196Q	SCN3A_uc002ucy.2_Missense_Mutation_p.R1147Q|SCN3A_uc002ucz.2_Missense_Mutation_p.R1147Q|SCN3A_uc002uda.1_Missense_Mutation_p.R1016Q|SCN3A_uc002udb.1_Missense_Mutation_p.R1016Q	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1196						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GCAGGTTTTTCGAAGATTCCA	0.333													32	75					0	0	0.004289	0	0
SCN3A	6328	broad.mit.edu	37	2	165986541	165986541	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:165986541C>T	uc002ucx.2	-	17	3323	c.2831G>A	c.(2830-2832)TGG>TAG	p.W944*	SCN3A_uc002ucy.2_Nonsense_Mutation_p.W895*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.W895*|SCN3A_uc002uda.1_Nonsense_Mutation_p.W764*|SCN3A_uc002udb.1_Nonsense_Mutation_p.W764*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	944						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GGTCTCTATCCACTCTCCACA	0.493													49	68					0	0	0.003610	0	0
SCN3A	6328	broad.mit.edu	37	2	166020939	166020939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166020939G>A	uc002ucx.2	-	6	1057	c.565C>T	c.(565-567)CCA>TCA	p.P189S	SCN3A_uc002ucy.2_Missense_Mutation_p.P189S|SCN3A_uc002ucz.2_Missense_Mutation_p.P189S|SCN3A_uc002uda.1_Missense_Mutation_p.P58S|SCN3A_uc002udb.1_Missense_Mutation_p.P58S	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	189	Helical; Name=S3 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CAGTTCCATGGATCACGAAGA	0.373													20	34					0	0	0.001216	0	0
SCN2A	6326	broad.mit.edu	37	2	166170157	166170157	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166170157G>A	uc002udc.2	+	9	1352	c.1062G>A	c.(1060-1062)GTG>GTA	p.V354V	SCN2A_uc002udd.2_Silent_p.V354V|SCN2A_uc002ude.2_Silent_p.V354V	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	354	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ACATCTGTGTGAAGGCTGGTA	0.413													43	65					0	0	0.003610	0	0
SCN2A	6326	broad.mit.edu	37	2	166245684	166245684	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166245684C>T	uc002udc.2	+	27	5658	c.5368C>T	c.(5368-5370)CTG>TTG	p.L1790L	SCN2A_uc002udd.2_Silent_p.L1790L|SCN2A_uc002ude.2_Silent_p.L1790L	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1790	IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TGCAGAGCCTCTGAGTGAGGA	0.443													34	48					0	0	0.002852	0	0
CSRNP3	80034	broad.mit.edu	37	2	166514530	166514530	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166514530G>A	uc002udf.2	+	5	784	c.408G>A	c.(406-408)AAG>AAA	p.K136K	CSRNP3_uc002udg.2_Silent_p.K136K	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	136					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						TAAAACTAAAGGTAAAAAACA	0.403													7	17					0	0	0.001984	0	0
CSRNP3	80034	broad.mit.edu	37	2	166535324	166535324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166535324G>A	uc002udf.2	+	7	1195	c.819G>A	c.(817-819)ATG>ATA	p.M273I	CSRNP3_uc002udg.2_Missense_Mutation_p.M273I	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	273					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						ACACAATAATGAAACTTGAAC	0.463													17	27					0	0	0.004990	0	0
SCN1A	6323	broad.mit.edu	37	2	166866347	166866347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166866347G>A	uc010zcz.1	-	20	3869	c.3851C>T	c.(3850-3852)TCA>TTA	p.S1284L	SCN1A_uc002udo.3_Missense_Mutation_p.S1164L|SCN1A_uc010fpk.2_Missense_Mutation_p.S1136L	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1295	Helical; Name=S3 of repeat III; (By similarity).|III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	ACTGACCAATGAAACCTGCAC	0.338													19	35					0	0	0.001523	0	0
SCN1A	6323	broad.mit.edu	37	2	166894560	166894560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166894560C>T	uc010zcz.1	-	15	2657	c.2639G>A	c.(2638-2640)GGA>GAA	p.G880E	SCN1A_uc002udo.3_Missense_Mutation_p.G760E|SCN1A_uc010fpk.2_Missense_Mutation_p.G732E	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	891	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GGTTAAATTTCCCAGAGCCCC	0.443													15	39					0	0	0.000958	0	0
SCN1A	6323	broad.mit.edu	37	2	166896056	166896056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166896056C>T	uc010zcz.1	-	14	2451	c.2433G>A	c.(2431-2433)ATG>ATA	p.M811I	SCN1A_uc002udo.3_Missense_Mutation_p.M691I|SCN1A_uc010fpk.2_Missense_Mutation_p.M663I	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	822	Helical; Name=S2 of repeat II; (By similarity).|II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGTAAGGATCCATGGCAATAA	0.358													12	22					0	0	0.001368	0	0
SCN1A	6323	broad.mit.edu	37	2	166900267	166900267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166900267G>A	uc010zcz.1	-	11	1973	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F	SCN1A_uc002udo.3_Missense_Mutation_p.S521F|SCN1A_uc010fpk.2_Missense_Mutation_p.S521F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	652						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	ACCAACCAAGGAAACCACACC	0.493													26	42					0	0	0.001786	0	0
SCN1A	6323	broad.mit.edu	37	2	166901660	166901660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:166901660C>T	uc010zcz.1	-	10	1573	c.1555G>A	c.(1555-1557)GAA>AAA	p.E519K	SCN1A_uc002udo.3_Missense_Mutation_p.E388K|SCN1A_uc010fpk.2_Missense_Mutation_p.E388K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	519						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TTTTGGAATTCATCCTCATCT	0.438													66	89					0	0	0.003610	0	0
SCN9A	6335	broad.mit.edu	37	2	167055790	167055790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:167055790C>T	uc010fpl.2	-	27	5667	c.5326G>A	c.(5326-5328)GAG>AAG	p.E1776K	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1787						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCAAACTTCTCCCAAACCTCA	0.433													45	49					0	0	0.003214	0	0
SCN9A	6335	broad.mit.edu	37	2	167085308	167085308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:167085308G>A	uc010fpl.2	-	22	4407	c.4066C>T	c.(4066-4068)CGT>TGT	p.R1356C	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1367	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CATTCGGAACGATTTGGAACT	0.403													92	119					0	0	0.003610	0	0
SCN9A	6335	broad.mit.edu	37	2	167085452	167085452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:167085452G>A	uc010fpl.2	-	22	4263	c.3922C>T	c.(3922-3924)CCT>TCT	p.P1308S	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1319	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ATGATGGAAGGAATTGCTCCT	0.353													50	51					0	0	0.003610	0	0
SCN9A	6335	broad.mit.edu	37	2	167129007	167129007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:167129007G>A	uc010fpl.2	-	17	3561	c.3220C>T	c.(3220-3222)CTC>TTC	p.L1074F	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1085						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GTCACTGTGAGGCTGGGATTG	0.423													17	28					0	0	0.004007	0	0
SCN9A	6335	broad.mit.edu	37	2	167142872	167142872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:167142872C>T	uc010fpl.2	-	11	1917	c.1576G>A	c.(1576-1578)GAA>AAA	p.E526K	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.E397K|SCN9A_uc002uds.1_Missense_Mutation_p.E397K|SCN9A_uc002udt.1_Missense_Mutation_p.E397K	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	526						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AACCTCTTTTCATGTGCTCGC	0.438													81	148					0	0	0.003610	0	0
SCN7A	6332	broad.mit.edu	37	2	167279822	167279822	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:167279822A>T	uc002udu.1	-	18	3101	c.2974T>A	c.(2974-2976)TTT>ATT	p.F992I	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	992					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TAGGCCTTAAAACCATATGCC	0.318													39	52					0	0	0.002222	0	0
XIRP2	129446	broad.mit.edu	37	2	167992424	167992424	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:167992424G>A	uc002udx.2	+	2	432	c.414G>A	c.(412-414)GTG>GTA	p.V138V	XIRP2_uc010fpn.2_Silent_p.V138V|XIRP2_uc010fpo.2_Silent_p.V138V|XIRP2_uc010fpp.2_Silent_p.V138V|XIRP2_uc002udy.2_5'UTR	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	Error:Variant_position_missing_in_A4UGR9_after_alignment					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AACAGGAAGTGGAAATTGAGC	0.428													26	45					0	0	0.003330	0	0
XIRP2	129446	broad.mit.edu	37	2	168098326	168098326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:168098326C>T	uc002udx.2	+	7	1100	c.1082C>T	c.(1081-1083)TCG>TTG	p.S361L	XIRP2_uc010fpn.2_Missense_Mutation_p.S394L|XIRP2_uc010fpo.2_Missense_Mutation_p.S361L|XIRP2_uc010fpp.2_Missense_Mutation_p.S361L|XIRP2_uc002udy.2_Missense_Mutation_p.S186L|XIRP2_uc010fpq.2_Missense_Mutation_p.S139L|XIRP2_uc010fpr.2_Missense_Mutation_p.S139L	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	186					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCAAAGGTTTCGACTAAGTTG	0.363													38	46					0	0	0.004289	0	0
XIRP2	129446	broad.mit.edu	37	2	168101311	168101311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:168101311G>A	uc002udx.2	+	8	3427	c.3409G>A	c.(3409-3411)GAT>AAT	p.D1137N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D962N|XIRP2_uc010fpq.2_Missense_Mutation_p.D915N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	962	Xin 17.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCAGCCACTTGATACCATAAA	0.388													27	23					0	0	0.001061	0	0
XIRP2	129446	broad.mit.edu	37	2	168101389	168101389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:168101389C>T	uc002udx.2	+	8	3505	c.3487C>T	c.(3487-3489)CGT>TGT	p.R1163C	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R988C|XIRP2_uc010fpq.2_Missense_Mutation_p.R941C|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	988	Xin 18.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGGGGATGTTCGTACAGCATG	0.403													10	24					0	0	0.000978	0	0
XIRP2	129446	broad.mit.edu	37	2	168102838	168102838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:168102838G>A	uc002udx.2	+	8	4954	c.4936G>A	c.(4936-4938)GAA>AAA	p.E1646K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E1471K|XIRP2_uc010fpq.2_Missense_Mutation_p.E1424K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1471					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAGATCAACTGAATTTCATGC	0.323													18	21					0	0	0.000743	0	0
XIRP2	129446	broad.mit.edu	37	2	168102898	168102898	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:168102898C>T	uc002udx.2	+	8	5014	c.4996C>T	c.(4996-4998)CTG>TTG	p.L1666L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.L1491L|XIRP2_uc010fpq.2_Silent_p.L1444L|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1491					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AATAAAAAACCTGTTCTCTGA	0.303													20	40					0	0	0.001523	0	0
XIRP2	129446	broad.mit.edu	37	2	168103448	168103448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:168103448G>A	uc002udx.2	+	8	5564	c.5546G>A	c.(5545-5547)AGC>AAC	p.S1849N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S1674N|XIRP2_uc010fpq.2_Missense_Mutation_p.S1627N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1674					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AATTCCCTCAGCCAGGCTGTA	0.383													23	28					0	0	0.002780	0	0
XIRP2	129446	broad.mit.edu	37	2	168103905	168103905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:168103905G>A	uc002udx.2	+	8	6021	c.6003G>A	c.(6001-6003)ATG>ATA	p.M2001I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.M1826I|XIRP2_uc010fpq.2_Missense_Mutation_p.M1779I|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1826					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTCAAACTATGGGGAAATCTT	0.453													19	36					0	0	0.001882	0	0
NOSTRIN	115677	broad.mit.edu	37	2	169711892	169711892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:169711892G>A	uc002ueg.2	+	11	890	c.886G>A	c.(886-888)GAG>AAG	p.E296K	NOSTRIN_uc002uef.2_Missense_Mutation_p.E353K|NOSTRIN_uc002uei.2_Missense_Mutation_p.E179K|NOSTRIN_uc010fpu.2_Missense_Mutation_p.E268K|NOSTRIN_uc002ueh.2_Missense_Mutation_p.E218K|NOSTRIN_uc002uej.2_Missense_Mutation_p.E179K|NOSTRIN_uc002uek.2_5'Flank	NM_001039724	NP_001034813	Q8IVI9	NOSTN_HUMAN	nitric oxide synthase trafficker isoform 2	296					endocytosis|nitric oxide metabolic process|regulation of nitric-oxide synthase activity	cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	protein binding				0						AATGGATAAAGAGAGACGAAA	0.378													20	39					0	0	0.001216	0	0
G6PC2	57818	broad.mit.edu	37	2	169764467	169764467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:169764467G>A	uc002uem.2	+	5	1038	c.946G>A	c.(946-948)GAA>AAA	p.E316K	G6PC2_uc002uen.2_3'UTR|G6PC2_uc010fpv.2_Missense_Mutation_p.E200K	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	316	Lumenal (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						CCCGACTCACGAAGAGCATTT	0.438													41	72					0	0	0.003610	0	0
LRP2	4036	broad.mit.edu	37	2	170011012	170011012	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:170011012G>A	uc002ues.2	-	66	12466	c.12253C>T	c.(12253-12255)CAA>TAA	p.Q4085*		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4085	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCAACAGCTTGGATATATTCC	0.373													36	36					0	0	0.003755	0	0
LRP2	4036	broad.mit.edu	37	2	170101310	170101310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:170101310G>A	uc002ues.2	-	22	3536	c.3323C>T	c.(3322-3324)TCC>TTC	p.S1108F	LRP2_uc010zdf.1_Missense_Mutation_p.S971F	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1108	LDL-receptor class A 10.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GTCAAGGCAGGAAGCAGGTGC	0.527													45	69					0	0	0.003610	0	0
C2orf77	129881	broad.mit.edu	37	2	170505779	170505779	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:170505779A>G	uc002ufe.2	-	8	1324	c.1230T>C	c.(1228-1230)GAT>GAC	p.D410D		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	410											0						AGAAAATCTGATCTGCTTTCA	0.353													30	58					0	0	0.001271	0	0
MYO3B	140469	broad.mit.edu	37	2	171248117	171248117	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:171248117A>T	uc002ufy.2	+	15	1808	c.1665A>T	c.(1663-1665)GAA>GAT	p.E555D	MYO3B_uc002ufv.2_Missense_Mutation_p.E542D|MYO3B_uc010fqb.1_Missense_Mutation_p.E542D|MYO3B_uc002ufz.2_Missense_Mutation_p.E555D|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	555	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						TTCCTGAGGAAAAACCTCCTA	0.348													17	33					0	0	0.001216	0	0
DCAF17	80067	broad.mit.edu	37	2	172305290	172305290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:172305290C>T	uc002ugx.2	+	4	650	c.421C>T	c.(421-423)CTT>TTT	p.L141F	DCAF17_uc010zdq.1_RNA|DCAF17_uc010fqf.1_Missense_Mutation_p.L141F|DCAF17_uc010zdr.1_RNA	NM_025000	NP_079276	Q5H9S7	DCA17_HUMAN	DDB1 and CUL4 associated factor 17 isoform 1	141						CUL4 RING ubiquitin ligase complex|integral to membrane|nucleolus					0						GGGAAAAATCCTTGAGAAAAT	0.338													33	65					0	0	0.003271	0	0
CYBRD1	79901	broad.mit.edu	37	2	172379235	172379235	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:172379235C>T	uc002ugy.3	+	1	370	c.180C>T	c.(178-180)TTC>TTT	p.F60F	CYBRD1_uc002ugz.3_Silent_p.F60F	NM_024843	NP_079119	Q53TN4	CYBR1_HUMAN	cytochrome b reductase 1 isoform 1	60	Cytochrome b561.|Helical; Name=2; (Potential).				cellular iron ion homeostasis|electron transport chain|transmembrane transport	integral to membrane	ferric-chelate reductase activity|metal ion binding				0						GCTTCGTCTTCATCCAGGGCA	0.652													21	40					0	0	0.003330	0	0
CYBRD1	79901	broad.mit.edu	37	2	172411207	172411207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:172411207G>A	uc002ugy.3	+	4	921	c.731G>A	c.(730-732)GGA>GAA	p.G244E	CYBRD1_uc002ugz.3_3'UTR	NM_024843	NP_079119	Q53TN4	CYBR1_HUMAN	cytochrome b reductase 1 isoform 1	244					cellular iron ion homeostasis|electron transport chain|transmembrane transport	integral to membrane	ferric-chelate reductase activity|metal ion binding				0						ACTGAACAGGGAGCAAGAGGT	0.463													14	14					0	0	0.003163	0	0
ITGA6	3655	broad.mit.edu	37	2	173338914	173338914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:173338914C>T	uc002uhp.1	+	6	1110	c.907C>T	c.(907-909)CCT>TCT	p.P303S	ITGA6_uc010fqk.1_Missense_Mutation_p.P189S|ITGA6_uc010zdy.1_Missense_Mutation_p.P184S|ITGA6_uc002uho.1_Missense_Mutation_p.P303S|ITGA6_uc010fqm.1_5'Flank	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	342	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			ACATCTCCTCCCTGAGCACAT	0.488													27	38					0	0	0.001271	0	0
GPR155	151556	broad.mit.edu	37	2	175324675	175324675	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:175324675T>C	uc002uit.2	-	11	2093	c.1702A>G	c.(1702-1704)ACT>GCT	p.T568A	GPR155_uc002uiu.2_Missense_Mutation_p.T568A|GPR155_uc002uiv.2_Missense_Mutation_p.T568A|GPR155_uc010fqs.2_Missense_Mutation_p.T540A	NM_001033045	NP_001028217	Q7Z3F1	GP155_HUMAN	G protein-coupled receptor 155 isoform 9	568					intracellular signal transduction|transmembrane transport	integral to membrane				ovary(1)	1						TCAAAAGCAGTATTTCCAGGC	0.408													26	51					0	0	0.001512	0	0
CHRNA1	1134	broad.mit.edu	37	2	175614848	175614848	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:175614848G>A	uc002ujd.2	-	8	981	c.903C>T	c.(901-903)TTC>TTT	p.F301F	uc002uiw.2_Intron|CHRNA1_uc002uje.2_Silent_p.F276F	NM_001039523	NP_001034612	P02708	ACHA_HUMAN	nicotinic cholinergic receptor alpha 1 isoform a	301	Helical.		F -> L (in FCCMS; fewer and shorter ion channel activations with decreased channel opening rate and increased channel closing rate).		muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TGACCAGAAGGAACACAGTCA	0.458													13	23					0	0	0.001368	0	0
HOXD12	3238	broad.mit.edu	37	2	176965348	176965348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:176965348G>A	uc010zev.1	+	2	673	c.673G>A	c.(673-675)GAA>AAA	p.E225K	HOXD12_uc010zew.1_Missense_Mutation_p.R234Q	NM_021193	NP_067016	P35452	HXD12_HUMAN	homeobox D12	225	Homeobox.					nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		CCTCGTCAACGAATTCATCAA	0.552													6	10					0	0	0.001168	0	0
HOXD3	3232	broad.mit.edu	37	2	177034194	177034194	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:177034194C>A	uc002ukt.1	+	2	528	c.352C>A	c.(352-354)CAA>AAA	p.Q118K		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	118	Poly-Pro.				anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		GCAGccaccacaaccccctcc	0.473													8	21					5.4927e-09	9.49114e-09	0.004482	1	0
PDE11A	50940	broad.mit.edu	37	2	178762793	178762793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:178762793C>T	uc002ulq.2	-	4	1612	c.1294G>A	c.(1294-1296)GAA>AAA	p.E432K	PDE11A_uc002ulr.2_Missense_Mutation_p.E182K|PDE11A_uc002uls.1_Missense_Mutation_p.E74K|PDE11A_uc002ult.1_Missense_Mutation_p.E182K|PDE11A_uc002ulu.1_Missense_Mutation_p.E74K	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	432	GAF 2.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			ACTGGTGATTCGATGTCCTCT	0.348									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				35	37					0	0	0.001287	0	0
RBM45	129831	broad.mit.edu	37	2	178988960	178988960	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:178988960T>A	uc002ulv.2	+	8	1267	c.1175T>A	c.(1174-1176)CTT>CAT	p.L392H		NM_152945	NP_694453	Q8IUH3	RBM45_HUMAN	RNA binding motif protein 45	394	RRM 3.				cell differentiation|nervous system development	cytoplasm|nucleus	nucleotide binding|RNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.00957)|all cancers(119;0.037)			AAAGAAAGACTTTTTATTGTG	0.338													29	59					0	0	0.001512	0	0
TTN	7273	broad.mit.edu	37	2	179395285	179395285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179395285C>T	uc010zfg.1	-	307	98577	c.98353G>A	c.(98353-98355)GAT>AAT	p.D32785N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D26480N|TTN_uc010zfi.1_Missense_Mutation_p.D26413N|TTN_uc010zfj.1_Missense_Mutation_p.D26288N|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33712							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCCTTGATCAGATTCAGTG	0.383													46	70					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179398114	179398114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179398114C>T	uc010zfg.1	-	307	95748	c.95524G>A	c.(95524-95526)GAA>AAA	p.E31842K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25537K|TTN_uc010zfi.1_Missense_Mutation_p.E25470K|TTN_uc010zfj.1_Missense_Mutation_p.E25345K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32769							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGATAATTTCAATGTTAGGC	0.478													21	55					0	0	0.001882	0	0
TTN	7273	broad.mit.edu	37	2	179399109	179399109	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179399109T>A	uc010zfg.1	-	307	94753	c.94529A>T	c.(94528-94530)GAA>GTA	p.E31510V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25205V|TTN_uc010zfi.1_Missense_Mutation_p.E25138V|TTN_uc010zfj.1_Missense_Mutation_p.E25013V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32437							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGACTCTTTCTATCTTCTG	0.463													38	39					0	0	0.005524	0	0
TTN	7273	broad.mit.edu	37	2	179399748	179399748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179399748G>A	uc010zfg.1	-	307	94114	c.93890C>T	c.(93889-93891)TCC>TTC	p.S31297F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S24992F|TTN_uc010zfi.1_Missense_Mutation_p.S24925F|TTN_uc010zfj.1_Missense_Mutation_p.S24800F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32224							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCAGAATGGAAATTTCCTT	0.348													32	68					0	0	0.002096	0	0
TTN	7273	broad.mit.edu	37	2	179406264	179406264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179406264C>T	uc010zfg.1	-	299	90060	c.89836G>A	c.(89836-89838)GAT>AAT	p.D29946N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D23641N|TTN_uc010zfi.1_Missense_Mutation_p.D23574N|TTN_uc010zfj.1_Missense_Mutation_p.D23449N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30873							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCATGCCATCACGGGAAACA	0.458													10	5					0	0	0.000673	0	0
TTN	7273	broad.mit.edu	37	2	179411902	179411902	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179411902A>T	uc010zfg.1	-	289	86870	c.86646T>A	c.(86644-86646)CGT>CGA	p.R28882R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R22577R|TTN_uc010zfi.1_Silent_p.R22510R|TTN_uc010zfj.1_Silent_p.R22385R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29809							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATTGTATTACGTTCTTTCT	0.413													93	147					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179417239	179417239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179417239C>T	uc010zfg.1	-	284	82908	c.82684G>A	c.(82684-82686)GAA>AAA	p.E27562K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E21257K|TTN_uc010zfi.1_Missense_Mutation_p.E21190K|TTN_uc010zfj.1_Missense_Mutation_p.E21065K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28489							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTCAACTTCAGGTGTAATA	0.433													16	20					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179425410	179425410	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179425410G>A	uc010zfg.1	-	275	77969	c.77745C>T	c.(77743-77745)ATC>ATT	p.I25915I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I19610I|TTN_uc010zfi.1_Silent_p.I19543I|TTN_uc010zfj.1_Silent_p.I19418I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26842							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTAATAGTCGATATCTGCAC	0.458													15	28					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179430965	179430965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179430965C>T	uc010zfg.1	-	275	72414	c.72190G>A	c.(72190-72192)GAA>AAA	p.E24064K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E17759K|TTN_uc010zfi.1_Missense_Mutation_p.E17692K|TTN_uc010zfj.1_Missense_Mutation_p.E17567K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24991							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGTGAATTCACCTTCCTCT	0.388													70	79					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179436373	179436373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179436373G>A	uc010zfg.1	-	275	67006	c.66782C>T	c.(66781-66783)TCC>TTC	p.S22261F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S15956F|TTN_uc010zfi.1_Missense_Mutation_p.S15889F|TTN_uc010zfj.1_Missense_Mutation_p.S15764F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23188							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGGCCCCAGGAAAGAGTAAT	0.428													19	28					0	0	0.000743	0	0
TTN	7273	broad.mit.edu	37	2	179437802	179437802	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179437802A>G	uc010zfg.1	-	275	65577	c.65353T>C	c.(65353-65355)TCA>CCA	p.S21785P	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S15480P|TTN_uc010zfi.1_Missense_Mutation_p.S15413P|TTN_uc010zfj.1_Missense_Mutation_p.S15288P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22712							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGATTTCTGAACCACCATCA	0.453													14	27					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179444372	179444372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179444372C>T	uc010zfg.1	-	268	60072	c.59848G>A	c.(59848-59850)GAA>AAA	p.E19950K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E13645K|TTN_uc010zfi.1_Missense_Mutation_p.E13578K|TTN_uc010zfj.1_Missense_Mutation_p.E13453K|uc002umv.1_3'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20877							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGGTATATTCCTTCCCTTCA	0.418													46	74					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179444787	179444787	+	Silent	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179444787G>T	uc010zfg.1	-	267	59747	c.59523C>A	c.(59521-59523)TCC>TCA	p.S19841S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.S13536S|TTN_uc010zfi.1_Silent_p.S13469S|TTN_uc010zfj.1_Silent_p.S13344S|uc002umv.1_3'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20768							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCTTGTTTTGGAGCACTCAG	0.453													7	141					0.000442599	0.000761396	0.000443	1	0
TTN	7273	broad.mit.edu	37	2	179449576	179449576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179449576C>T	uc010zfg.1	-	259	57312	c.57088G>A	c.(57088-57090)GAG>AAG	p.E19030K	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E12725K|TTN_uc010zfi.1_Missense_Mutation_p.E12658K|TTN_uc010zfj.1_Missense_Mutation_p.E12533K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19957							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCACACTTCTCCACTATATAA	0.502													40	76					0	0	0.002222	0	0
TTN	7273	broad.mit.edu	37	2	179452278	179452278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179452278C>T	uc010zfg.1	-	255	56278	c.56054G>A	c.(56053-56055)GGA>GAA	p.G18685E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G12380E|TTN_uc010zfi.1_Missense_Mutation_p.G12313E|TTN_uc010zfj.1_Missense_Mutation_p.G12188E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19612							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCCTTTTCTCCTGCTGGGTT	0.423													4	13					0	0	0.000248	0	0
TTN	7273	broad.mit.edu	37	2	179452454	179452454	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179452454G>A	uc010zfg.1	-	255	56102	c.55878C>T	c.(55876-55878)CTC>CTT	p.L18626L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L12321L|TTN_uc010zfi.1_Silent_p.L12254L|TTN_uc010zfj.1_Silent_p.L12129L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19553							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTATAGCAAAGAGACGAATAG	0.443													17	18					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179454202	179454202	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179454202C>T	uc010zfg.1	-	253	54770	c.54546G>A	c.(54544-54546)GGG>GGA	p.G18182G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G11877G|TTN_uc010zfi.1_Silent_p.G11810G|TTN_uc010zfj.1_Silent_p.G11685G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19109							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTCACTTTCCCCACCTTCAT	0.398													26	29					0	0	0.003330	0	0
TTN	7273	broad.mit.edu	37	2	179456617	179456617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179456617G>A	uc010zfg.1	-	252	52449	c.52225C>T	c.(52225-52227)CCC>TCC	p.P17409S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P11104S|TTN_uc010zfi.1_Missense_Mutation_p.P11037S|TTN_uc010zfj.1_Missense_Mutation_p.P10912S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18336							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCCCTGGGGGATCTTTTCAA	0.423													19	35					0	0	0.001216	0	0
TTN	7273	broad.mit.edu	37	2	179458944	179458944	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179458944G>A	uc010zfg.1	-	246	50696	c.50472C>T	c.(50470-50472)TTC>TTT	p.F16824F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.F10519F|TTN_uc010zfi.1_Silent_p.F10452F|TTN_uc010zfj.1_Silent_p.F10327F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17751							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTATCTCTGAAGTCGAGGT	0.413													35	37					0	0	0.001485	0	0
TTN	7273	broad.mit.edu	37	2	179463480	179463480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179463480G>A	uc010zfg.1	-	240	49477	c.49253C>T	c.(49252-49254)CCA>CTA	p.P16418L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P10113L|TTN_uc010zfi.1_Missense_Mutation_p.P10046L|TTN_uc010zfj.1_Missense_Mutation_p.P9921L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17345							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTACCAATTGGATCTCTAGC	0.438													64	112					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179467100	179467100	+	Silent	SNP	C	T	T	rs62178963	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179467100C>T	uc010zfg.1	-	232	47549	c.47325G>A	c.(47323-47325)AGG>AGA	p.R15775R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R9470R|TTN_uc010zfi.1_Silent_p.R9403R|TTN_uc010zfj.1_Silent_p.R9278R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16702							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTGTACTTCCTGAGCTCTT	0.413													30	54					0	0	0.001512	0	0
TTN	7273	broad.mit.edu	37	2	179468711	179468711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179468711G>A	uc010zfg.1	-	231	47223	c.46999C>T	c.(46999-47001)CGT>TGT	p.R15667C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R9362C|TTN_uc010zfi.1_Missense_Mutation_p.R9295C|TTN_uc010zfj.1_Missense_Mutation_p.R9170C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16594							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAAGCAAACGAGGAACATTA	0.473													99	135					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179481726	179481726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179481726C>T	uc010zfg.1	-	205	40410	c.40186G>A	c.(40186-40188)GAT>AAT	p.D13396N	TTN_uc010zfh.1_Missense_Mutation_p.D7091N|TTN_uc010zfi.1_Missense_Mutation_p.D7024N|TTN_uc010zfj.1_Missense_Mutation_p.D6899N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14323							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACTTAAATCCATTGTTGGT	0.423													46	86					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179485684	179485684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179485684C>T	uc010zfg.1	-	196	38173	c.37949G>A	c.(37948-37950)CGG>CAG	p.R12650Q	TTN_uc010zfh.1_Missense_Mutation_p.R6345Q|TTN_uc010zfi.1_Missense_Mutation_p.R6278Q|TTN_uc010zfj.1_Missense_Mutation_p.R6153Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13577							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCTTCACCCGGGTGTCCTT	0.373													31	30					0	0	0.003271	0	0
TTN	7273	broad.mit.edu	37	2	179497958	179497958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179497958G>A	uc010zfg.1	-	182	35562	c.35338C>T	c.(35338-35340)CAC>TAC	p.H11780Y	TTN_uc010zfh.1_Missense_Mutation_p.H5475Y|TTN_uc010zfi.1_Missense_Mutation_p.H5408Y|TTN_uc010zfj.1_Missense_Mutation_p.H5283Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12707							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTGGCCGTGAACATCAGGT	0.448													31	28					0	0	0.001271	0	0
TTN	7273	broad.mit.edu	37	2	179498194	179498194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179498194C>T	uc010zfg.1	-	181	35412	c.35188G>A	c.(35188-35190)GAA>AAA	p.E11730K	TTN_uc010zfh.1_Missense_Mutation_p.E5425K|TTN_uc010zfi.1_Missense_Mutation_p.E5358K|TTN_uc010zfj.1_Missense_Mutation_p.E5233K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12657							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.E5233K(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACACATATTCGCCTTTATCT	0.428													37	47					0	0	0.004878	0	0
TTN	7273	broad.mit.edu	37	2	179514546	179514546	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179514546T>G	uc010zfg.1	-	165	32815	c.32591A>C	c.(32590-32592)AAA>ACA	p.K10864T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_RNA|TTN_uc002umx.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11791							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGAGTACCTTTAGGAGGCGG	0.348													45	70					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179547523	179547523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179547523C>T	uc010zfg.1	-	132	29487	c.29263G>A	c.(29263-29265)GAA>AAA	p.E9755K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6416K|TTN_uc010fre.1_Missense_Mutation_p.E602K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10682							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTCAAATTCTTTATAATCA	0.363													64	87					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179565924	179565924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179565924G>A	uc010zfg.1	-	108	27097	c.26873C>T	c.(26872-26874)CCT>CTT	p.P8958L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P5619L|TTN_uc010fre.1_Missense_Mutation_p.P69L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9885							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACCACAGGAGGGATTTCTGA	0.368													36	58					0	0	0.001951	0	0
TTN	7273	broad.mit.edu	37	2	179576946	179576947	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179576946_179576947GG>AA	uc010zfg.1	-	93	24102_24103	c.23878_23879CC>TT	c.(23878-23880)CCA>TTA	p.P7960L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P4621L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8887							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAATACGGTGGTTCTGCAGCC	0.441													44	40					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179577629	179577629	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179577629G>A	uc010zfg.1	-	91	23615	c.23391C>T	c.(23389-23391)ATC>ATT	p.I7797I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I4458I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8724							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCTTTTACGATACTTGTGA	0.413													10	24					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179581943	179581943	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179581943C>T	uc010zfg.1	-	85	22010	c.21786G>A	c.(21784-21786)TTG>TTA	p.L7262L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L3923L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8189							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTTTCTACCAAAGTCATCT	0.458													19	25					0	0	0.001216	0	0
TTN	7273	broad.mit.edu	37	2	179583665	179583665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179583665C>T	uc010zfg.1	-	81	20754	c.20530G>A	c.(20530-20532)GAA>AAA	p.E6844K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E3505K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7771							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCAAAACTTCCACAGAATCA	0.473													6	4					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179586739	179586739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179586739C>T	uc010zfg.1	-	75	19143	c.18919G>A	c.(18919-18921)GAT>AAT	p.D6307N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D2968N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7234							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTGTTATCTTTTGACCAA	0.418													64	134					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179587175	179587175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179587175G>A	uc010zfg.1	-	74	18831	c.18607C>T	c.(18607-18609)CCC>TCC	p.P6203S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P2864S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7130							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTGGATGGGTGCAGAGCCA	0.398													30	56					0	0	0.002096	0	0
TTN	7273	broad.mit.edu	37	2	179588212	179588212	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179588212C>T	uc010zfg.1	-	71	18107	c.17883G>A	c.(17881-17883)GGG>GGA	p.G5961G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G2622G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6888							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTGTATTCCCCACTCTGAG	0.433													16	15					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179594213	179594213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179594213C>T	uc010zfg.1	-	61	15162	c.14938G>A	c.(14938-14940)GGA>AGA	p.G4980R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G1641R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5907							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGGTGTTCCCGTAACTTCA	0.443													35	53					0	0	0.003755	0	0
TTN	7273	broad.mit.edu	37	2	179595882	179595882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179595882C>T	uc010zfg.1	-	57	14002	c.13778G>A	c.(13777-13779)GGA>GAA	p.G4593E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G1254E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5520							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCTGGGTCTCCTTGGGTGAC	0.448													68	97					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179598116	179598116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179598116C>T	uc010zfg.1	-	51	12396	c.12172G>A	c.(12172-12174)GTC>ATC	p.V4058I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V719I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4985							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTACTGGCGACCAAGGGTCTC	0.473													38	55					0	0	0.004878	0	0
TTN	7273	broad.mit.edu	37	2	179599324	179599324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179599324G>A	uc010zfg.1	-	49	11719	c.11495C>T	c.(11494-11496)TCT>TTT	p.S3832F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S493F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4759							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGATGAAAGAAGGAGGTTC	0.383													69	101					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179600660	179600660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179600660G>A	uc010zfg.1	-	47	11005	c.10781C>T	c.(10780-10782)TCA>TTA	p.S3594L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S255L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4521							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGTTAGGTGAAGGTGAGAG	0.438													22	51					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179604238	179604238	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179604238C>T	uc010zfh.1	-	46	13433	c.13209G>A	c.(13207-13209)GAG>GAA	p.E4403E	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.E4336E|TTN_uc010zfj.1_Silent_p.E4211E|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCTTTTTCCTCTGATGGTT	0.448													25	47					0	0	0.005443	0	0
TTN	7273	broad.mit.edu	37	2	179605449	179605449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179605449C>T	uc010zfh.1	-	46	12222	c.11998G>A	c.(11998-12000)GAG>AAG	p.E4000K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E3933K|TTN_uc010zfj.1_Missense_Mutation_p.E3808K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCTCAGGCTCTTCAGGCATT	0.428													29	53					0	0	0.001061	0	0
TTN	7273	broad.mit.edu	37	2	179605572	179605572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179605572C>T	uc010zfh.1	-	46	12099	c.11875G>A	c.(11875-11877)GAA>AAA	p.E3959K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E3892K|TTN_uc010zfj.1_Missense_Mutation_p.E3767K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAAAGAAATTCCCTGGTGCTT	0.453													50	83					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179605805	179605805	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179605805A>T	uc010zfh.1	-	46	11866	c.11642T>A	c.(11641-11643)TTT>TAT	p.F3881Y	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.F3814Y|TTN_uc010zfj.1_Missense_Mutation_p.F3689Y|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3814							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTCTGTGGAAAATCCTCAGG	0.483													63	98					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179606375	179606375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179606375G>A	uc010zfh.1	-	46	11296	c.11072C>T	c.(11071-11073)CCT>CTT	p.P3691L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P3624L|TTN_uc010zfj.1_Missense_Mutation_p.P3499L|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCAGCAGAAGGGGTTAATAG	0.428													39	52					0	0	0.002852	0	0
TTN	7273	broad.mit.edu	37	2	179616047	179616047	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179616047G>A	uc002unb.2	-	46	11304	c.11080C>T	c.(11080-11082)CTG>TTG	p.L3694L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9540							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTGTCCAGGAAACTTTCA	0.343													40	56					0	0	0.002522	0	0
TTN	7273	broad.mit.edu	37	2	179629296	179629296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179629296C>T	uc010zfg.1	-	42	10170	c.9946G>A	c.(9946-9948)GAC>AAC	p.D3316N	TTN_uc010zfh.1_Missense_Mutation_p.D3270N|TTN_uc010zfi.1_Missense_Mutation_p.D3270N|TTN_uc010zfj.1_Missense_Mutation_p.D3270N|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Missense_Mutation_p.D3316N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3316							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACACCATAGTCATTCTTGGCT	0.453													47	64					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179629430	179629430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179629430G>A	uc010zfg.1	-	42	10036	c.9812C>T	c.(9811-9813)TCC>TTC	p.S3271F	TTN_uc010zfh.1_Missense_Mutation_p.S3225F|TTN_uc010zfi.1_Missense_Mutation_p.S3225F|TTN_uc010zfj.1_Missense_Mutation_p.S3225F|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Missense_Mutation_p.S3271F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3271							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGTACCAGGAAATTTTGGG	0.527													42	52					0	0	0.001951	0	0
TTN	7273	broad.mit.edu	37	2	179632639	179632639	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179632639C>T	uc010zfg.1	-	40	9542	c.9318G>A	c.(9316-9318)CAG>CAA	p.Q3106Q	TTN_uc010zfh.1_Silent_p.Q3060Q|TTN_uc010zfi.1_Silent_p.Q3060Q|TTN_uc010zfj.1_Silent_p.Q3060Q|TTN_uc002unb.2_Silent_p.Q3106Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3106							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTCTCCTTCTGAATCTTTA	0.448													14	19					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179635380	179635380	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179635380C>T	uc010zfg.1	-	35	8363	c.8139G>A	c.(8137-8139)CTG>CTA	p.L2713L	TTN_uc010zfh.1_Silent_p.L2667L|TTN_uc010zfi.1_Silent_p.L2667L|TTN_uc010zfj.1_Silent_p.L2667L|TTN_uc002unb.2_Silent_p.L2713L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2713							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGGTTCTTCAGAGTCTTCT	0.388													40	53					0	0	0.001485	0	0
TTN	7273	broad.mit.edu	37	2	179641978	179641978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179641978G>A	uc010zfg.1	-	27	4936	c.4712C>T	c.(4711-4713)TCC>TTC	p.S1571F	TTN_uc010zfh.1_Missense_Mutation_p.S1525F|TTN_uc010zfi.1_Missense_Mutation_p.S1525F|TTN_uc010zfj.1_Missense_Mutation_p.S1525F|TTN_uc002unb.2_Missense_Mutation_p.S1571F|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1571							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCAAGTCGGGAACCTTCCTT	0.388													30	37					0	0	0.001271	0	0
TTN	7273	broad.mit.edu	37	2	179644801	179644801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179644801C>T	uc010zfg.1	-	22	3879	c.3655G>A	c.(3655-3657)GAA>AAA	p.E1219K	TTN_uc010zfh.1_Missense_Mutation_p.E1173K|TTN_uc010zfi.1_Missense_Mutation_p.E1173K|TTN_uc010zfj.1_Missense_Mutation_p.E1173K|TTN_uc002unb.2_Missense_Mutation_p.E1219K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1219							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTtctttttcatactctttt	0.323													29	62					0	0	0.001512	0	0
TTN	7273	broad.mit.edu	37	2	179656855	179656855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179656855C>T	uc010zfg.1	-	10	1830	c.1606G>A	c.(1606-1608)GAA>AAA	p.E536K	TTN_uc010zfh.1_Missense_Mutation_p.E536K|TTN_uc010zfi.1_Missense_Mutation_p.E536K|TTN_uc010zfj.1_Missense_Mutation_p.E536K|TTN_uc002unb.2_Missense_Mutation_p.E536K|TTN_uc010frg.1_Missense_Mutation_p.E210K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	536							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCTAGTTTCTTGTTCTTTG	0.284													30	27					0	0	0.003755	0	0
TTN	7273	broad.mit.edu	37	2	179664562	179664562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179664562C>T	uc002und.2	-	5	884	c.659G>A	c.(658-660)CGA>CAA	p.R220Q	TTN_uc010zfg.1_Missense_Mutation_p.R220Q|TTN_uc010zfh.1_Missense_Mutation_p.R220Q|TTN_uc010zfi.1_Missense_Mutation_p.R220Q|TTN_uc010zfj.1_Missense_Mutation_p.R220Q|TTN_uc002unb.2_Missense_Mutation_p.R220Q			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	220							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTTCAATTCGGGTTTGTCT	0.403													23	30					0	0	0.005443	0	0
TTN	7273	broad.mit.edu	37	2	179669288	179669288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179669288G>A	uc002und.2	-	2	307	c.82C>T	c.(82-84)CAC>TAC	p.H28Y	TTN_uc010zfg.1_Missense_Mutation_p.H28Y|TTN_uc010zfh.1_Missense_Mutation_p.H28Y|TTN_uc010zfi.1_Missense_Mutation_p.H28Y|TTN_uc010zfj.1_Missense_Mutation_p.H28Y|TTN_uc002unb.2_Missense_Mutation_p.H28Y			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	28							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACTAATGTGAGCCTCAAAG	0.458													5	18					0	0	0.000602	0	0
CCDC141	285025	broad.mit.edu	37	2	179701823	179701823	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179701823G>A	uc002unf.1	-	13	2455	c.2398C>T	c.(2398-2400)CAA>TAA	p.Q800*	CCDC141_uc002une.1_Nonsense_Mutation_p.Q250*	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	800							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GTGCCTGATTGAAACCTGAGG	0.488													15	23					0	0	0.002450	0	0
CCDC141	285025	broad.mit.edu	37	2	179702184	179702184	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179702184C>T	uc002unf.1	-	13	2094	c.2037G>A	c.(2035-2037)GGG>GGA	p.G679G	CCDC141_uc002une.1_Silent_p.G129G	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	679							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GGCTGCTGGTCCCAGCCTGCA	0.537													19	17					0	0	0.001216	0	0
CCDC141	285025	broad.mit.edu	37	2	179702243	179702243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179702243C>T	uc002unf.1	-	13	2035	c.1978G>A	c.(1978-1980)GAA>AAA	p.E660K	CCDC141_uc002une.1_Missense_Mutation_p.E110K	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	660							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			ACAGGCTCTTCCACCTCCATG	0.577													17	17					0	0	0.000743	0	0
CCDC141	285025	broad.mit.edu	37	2	179710452	179710452	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179710452C>T	uc002unf.1	-	12	1707	c.1650G>A	c.(1648-1650)AAG>AAA	p.K550K	CCDC141_uc002une.1_5'UTR	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	550							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCGGATTCATCTTTAAAACAT	0.373													11	15					0	0	0.001368	0	0
CCDC141	285025	broad.mit.edu	37	2	179714832	179714832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179714832G>A	uc002unf.1	-	11	1633	c.1576C>T	c.(1576-1578)CTT>TTT	p.L526F		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	526							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			ACAGATTCAAGAACCTCTTTG	0.338													39	46					0	0	0.002852	0	0
CCDC141	285025	broad.mit.edu	37	2	179730620	179730620	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:179730620C>T	uc002unf.1	-	7	930	c.873G>A	c.(871-873)AAG>AAA	p.K291K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	291	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GCTGTAGGTTCTTTGCAGAAA	0.478													74	89					0	0	0.003610	0	0
ITGA4	3676	broad.mit.edu	37	2	182363378	182363378	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:182363378G>A	uc002unu.2	+	15	2332	c.1569G>A	c.(1567-1569)GTG>GTA	p.V523V	ITGA4_uc010frj.1_Silent_p.V5V	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	523	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GTTTGGATGTGAACAGAAAGG	0.333													16	41					0	0	0.000743	0	0
ITGA4	3676	broad.mit.edu	37	2	182374408	182374408	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:182374408C>T	uc002unu.2	+	16	2482	c.1719C>T	c.(1717-1719)ACC>ACT	p.T573T	ITGA4_uc010frj.1_Silent_p.T55T	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	573	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	ACATCCTCACCCCAATTCAGA	0.393													19	41					0	0	0.002299	0	0
PDE1A	5136	broad.mit.edu	37	2	183053786	183053786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:183053786C>T	uc002uos.2	-	12	1259	c.1175G>A	c.(1174-1176)GGA>GAA	p.G392E	PDE1A_uc010zfp.1_Missense_Mutation_p.G288E|PDE1A_uc002uoq.1_Missense_Mutation_p.G392E|PDE1A_uc010zfq.1_Missense_Mutation_p.G392E|PDE1A_uc002uor.2_Missense_Mutation_p.G376E|PDE1A_uc002uou.2_Missense_Mutation_p.G358E	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	392	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TTCTTTATCTCCCTGGAGAAA	0.393													35	57					0	0	0.003755	0	0
PDE1A	5136	broad.mit.edu	37	2	183066172	183066172	+	Silent	SNP	G	A	A	rs149666537		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:183066172G>A	uc002uos.2	-	11	1251	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	PDE1A_uc010zfp.1_Silent_p.F285F|PDE1A_uc002uoq.1_Silent_p.F389F|PDE1A_uc010zfq.1_Silent_p.F389F|PDE1A_uc002uor.2_Silent_p.F373F|PDE1A_uc002uou.2_Silent_p.F355F	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	389	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding	p.F389F(1)		skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			GCACCTGCAGGAAAAACTCCT	0.483													32	57					0	0	0.003271	0	0
PDE1A	5136	broad.mit.edu	37	2	183070689	183070689	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:183070689T>A	uc002uos.2	-	9	1012	c.928A>T	c.(928-930)AAT>TAT	p.N310Y	PDE1A_uc010zfp.1_Missense_Mutation_p.N206Y|PDE1A_uc002uoq.1_Missense_Mutation_p.N310Y|PDE1A_uc010zfq.1_Missense_Mutation_p.N310Y|PDE1A_uc002uor.2_Missense_Mutation_p.N294Y|PDE1A_uc002uou.2_Missense_Mutation_p.N276Y	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	310	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TTGGATAAATTTATCAAGATA	0.343													24	33					0	0	0.003954	0	0
ZNF804A	91752	broad.mit.edu	37	2	185463733	185463733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:185463733G>A	uc002uph.2	+	1	641	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	16						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CTCAGCAACGGACACTTTCGC	0.368													18	31					0	0	0.002780	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801392	185801392	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:185801392G>A	uc002uph.2	+	4	1863	c.1269G>A	c.(1267-1269)GAG>GAA	p.E423E		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	423						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GACAATGTGAGCCATTTGTAC	0.363													66	108					0	0	0.003610	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803675	185803675	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:185803675C>T	uc002uph.2	+	4	4146	c.3552C>T	c.(3550-3552)TTC>TTT	p.F1184F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1184						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ATCTGGCTTTCCCATCTTTAC	0.488													66	70					0	0	0.003610	0	0
CALCRL	10203	broad.mit.edu	37	2	188210969	188210969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:188210969C>T	uc002upv.3	-	15	1876	c.1328G>A	c.(1327-1329)GGA>GAA	p.G443E	CALCRL_uc010frt.2_Missense_Mutation_p.G443E	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	443	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			GATGCTTTTTCCATTTAAGTG	0.358													16	29					0	0	0.001523	0	0
CALCRL	10203	broad.mit.edu	37	2	188216659	188216659	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:188216659G>A	uc002upv.3	-	14	1706	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F	CALCRL_uc010frt.2_Silent_p.F386F	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	386	Helical; Name=7; (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			CTCCATTAAAGAAGCAGAAAA	0.269													19	16					0	0	0.002780	0	0
CALCRL	10203	broad.mit.edu	37	2	188216896	188216896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:188216896C>T	uc002upv.3	-	13	1621	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	CALCRL_uc010frt.2_Missense_Mutation_p.G358E	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	358	Extracellular (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			TGCAATCTTTCCTTCAGGTCG	0.433													26	30					0	0	0.003954	0	0
CALCRL	10203	broad.mit.edu	37	2	188228121	188228121	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:188228121G>A	uc002upv.3	-	9	1157	c.609C>T	c.(607-609)GCC>GCT	p.A203A	CALCRL_uc010frt.2_Silent_p.A203A	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	203	Extracellular (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			TGGCTACTAAGGCCTGGTTGT	0.418													26	53					0	0	0.001061	0	0
DIRC1	116093	broad.mit.edu	37	2	189599368	189599368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:189599368C>T	uc002uqi.1	-	2	551	c.280G>A	c.(280-282)GGG>AGG	p.G94R		NM_052952	NP_443184	Q969H9	DIRC1_HUMAN	disrupted in renal carcinoma 1	94											0			OV - Ovarian serous cystadenocarcinoma(117;0.00842)|Epithelial(96;0.102)			ATTTTCCACCCCCTCAATGAG	0.383													40	60					0	0	0.002522	0	0
COL3A1	1281	broad.mit.edu	37	2	189864583	189864583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:189864583C>T	uc002uqj.1	+	32	2362	c.2245C>T	c.(2245-2247)CCA>TCA	p.P749S		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	749	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	ACCAGGCGGTCCAGGTGCTGA	0.473													6	8					0	0	0.003080	0	0
COL3A1	1281	broad.mit.edu	37	2	189869026	189869026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:189869026G>A	uc002uqj.1	+	40	2984	c.2867G>A	c.(2866-2868)CGG>CAG	p.R956Q		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	956	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	ACTGGAGCACGGGGTCTTGCA	0.512													10	15					0	0	0.001368	0	0
COL5A2	1290	broad.mit.edu	37	2	189907490	189907490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:189907490C>T	uc002uqk.2	-	49	3756	c.3481G>A	c.(3481-3483)GGT>AGT	p.G1161S	COL5A2_uc010frx.2_Missense_Mutation_p.G737S	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1161					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCTTGTTCACCATTTGGACCC	0.378													18	15					0	0	0.000743	0	0
COL5A2	1290	broad.mit.edu	37	2	189907887	189907887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:189907887G>A	uc002uqk.2	-	48	3736	c.3461C>T	c.(3460-3462)CCT>CTT	p.P1154L	COL5A2_uc010frx.2_Missense_Mutation_p.P730L	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1154					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			AGGAGGGCCAGGAAGACCCTG	0.473													10	20					0	0	0.000673	0	0
OSGEPL1	64172	broad.mit.edu	37	2	190615320	190615320	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:190615320A>T	uc002uqz.1	-	8	1763	c.1229T>A	c.(1228-1230)TTA>TAA	p.L410*	OSGEPL1_uc002ura.1_RNA	NM_022353	NP_071748	Q9H4B0	OSGP2_HUMAN	O-sialoglycoprotein endopeptidase-like 1	410					proteolysis|tRNA processing		metalloendopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0293)|all cancers(119;0.0831)			CTCCATTTTTAATTGTGGTAC	0.299													5	11					0	0	0.001984	0	0
OSGEPL1	64172	broad.mit.edu	37	2	190615322	190615322	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:190615322T>A	uc002uqz.1	-	8	1761	c.1227A>T	c.(1225-1227)CAA>CAT	p.Q409H	OSGEPL1_uc002ura.1_RNA	NM_022353	NP_071748	Q9H4B0	OSGP2_HUMAN	O-sialoglycoprotein endopeptidase-like 1	409					proteolysis|tRNA processing		metalloendopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0293)|all cancers(119;0.0831)			CCATTTTTAATTGTGGTACTT	0.299													5	11					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	2	190788252	190788252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:190788252G>A	uc002uro.2	+	1	334	c.191G>A	c.(190-192)CGG>CAG	p.R64Q						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		AGAAATGCCCGGGCTGCTGTA	0.473													26	29					0	0	0.003330	0	0
MSTN	2660	broad.mit.edu	37	2	190922330	190922330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:190922330G>A	uc002urp.2	-	3	915	c.782C>T	c.(781-783)CCA>CTA	p.P261L		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	261					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			GGATCTTTTTGGTGTGTCTGT	0.398													20	26					0	0	0.001216	0	0
SLC39A10	57181	broad.mit.edu	37	2	196545136	196545136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:196545136C>T	uc002utg.3	+	2	584	c.370C>T	c.(370-372)CAC>TAC	p.H124Y	SLC39A10_uc002uth.3_Missense_Mutation_p.H124Y|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	124	His-rich.				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			AAAGCATTTTCACTCACATAA	0.368													31	44					0	0	0.003271	0	0
SLC39A10	57181	broad.mit.edu	37	2	196548522	196548522	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:196548522C>T	uc002utg.3	+	3	1322	c.1108C>T	c.(1108-1110)CAA>TAA	p.Q370*	SLC39A10_uc002uth.3_Nonsense_Mutation_p.Q370*|SLC39A10_uc010zgp.1_5'UTR	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	370					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			ATTGTTATATCAAATCGACAG	0.353													36	47					0	0	0.002836	0	0
DNAH7	56171	broad.mit.edu	37	2	196602738	196602738	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:196602738C>T	uc002utj.3	-	65	12083	c.11982G>A	c.(11980-11982)ACG>ACA	p.T3994T	DNAH7_uc002uti.3_Silent_p.T477T	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3994					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCACAAAATTCGTGGAATGGC	0.453													16	25					0	0	0.004007	0	0
DNAH7	56171	broad.mit.edu	37	2	196673584	196673584	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:196673584C>T	uc002utj.3	-	53	10006	c.9905G>A	c.(9904-9906)TGG>TAG	p.W3302*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3302					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAGAAATCTCCACTCAGCTTT	0.388													14	22					0	0	0.002450	0	0
DNAH7	56171	broad.mit.edu	37	2	196746636	196746636	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:196746636G>A	uc002utj.3	-	36	5945	c.5844C>T	c.(5842-5844)ATC>ATT	p.I1948I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1948	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTGGCACAATGATTTCATTAA	0.373													28	41					0	0	0.005443	0	0
DNAH7	56171	broad.mit.edu	37	2	196749421	196749421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:196749421C>T	uc002utj.3	-	35	5752	c.5651G>A	c.(5650-5652)CGA>CAA	p.R1884Q		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1884					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTTCGAGTTCGATCTGAAAT	0.353													60	12					0	0	0.003610	0	0
DNAH7	56171	broad.mit.edu	37	2	196825573	196825573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:196825573G>A	uc002utj.3	-	18	2403	c.2302C>T	c.(2302-2304)CGT>TGT	p.R768C		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	768	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCATAAAGACGAAGATAAGGG	0.403													46	48					0	0	0.003214	0	0
HECW2	57520	broad.mit.edu	37	2	197183873	197183873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:197183873C>T	uc002utm.1	-	9	1924	c.1741G>A	c.(1741-1743)GAC>AAC	p.D581N	HECW2_uc002utl.1_Missense_Mutation_p.D225N	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	581					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GTCCCTGTGTCTGCGCCACTT	0.592													14	16					0	0	0.004990	0	0
HECW2	57520	broad.mit.edu	37	2	197184562	197184562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:197184562G>A	uc002utm.1	-	9	1235	c.1052C>T	c.(1051-1053)CCT>CTT	p.P351L	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	351					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity	p.P351S(1)		skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GTCATCGGAAGGGCTACCTAA	0.493													12	24					0	0	0.000978	0	0
CASP10	843	broad.mit.edu	37	2	202074144	202074144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:202074144C>T	uc002uxl.1	+	9	1692	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	CASP10_uc002uxj.1_Missense_Mutation_p.S425F|CASP10_uc002uxk.1_Missense_Mutation_p.S382F|CASP10_uc010fta.1_Missense_Mutation_p.S358F|CASP10_uc002uxm.1_Missense_Mutation_p.S382F|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	425					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GCACCCACTTCCCTGCAGGAC	0.532													46	55					0	0	0.003610	0	0
ALS2	57679	broad.mit.edu	37	2	202589077	202589077	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:202589077G>A	uc002uyo.2	-	21	3809	c.3453C>T	c.(3451-3453)TTC>TTT	p.F1151F	ALS2_uc002uyp.3_Silent_p.F1151F|ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	1151	MORN 5.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						ACTGGCCAATGAACATACTAG	0.413													25	40					0	0	0.002780	0	0
NBEAL1	65065	broad.mit.edu	37	2	204058526	204058526	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:204058526C>T	uc002uzt.3	+	46	7176	c.6843C>T	c.(6841-6843)CAC>CAT	p.H2281H	NBEAL1_uc002uzs.3_Intron	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2281	BEACH.						binding			ovary(1)|skin(1)	2						AGGAACCACACCCTCCAAGAT	0.279													80	116					0	0	0.003610	0	0
PARD3B	117583	broad.mit.edu	37	2	205829921	205829921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:205829921G>A	uc002var.1	+	3	476	c.269G>A	c.(268-270)AGC>AAC	p.S90N	PARD3B_uc010fub.1_Missense_Mutation_p.S90N|PARD3B_uc002vao.1_Missense_Mutation_p.S90N|PARD3B_uc002vap.1_Missense_Mutation_p.S90N|PARD3B_uc002vaq.1_Missense_Mutation_p.S90N	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	90					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		AAGATTGAGAGCCCCAGTGGA	0.483													8	22					0	0	0.004482	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170199	207170199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:207170199C>T	uc002vbp.2	+	5	1197	c.947C>T	c.(946-948)CCT>CTT	p.P316L		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	316							nucleic acid binding|zinc ion binding			ovary(3)	3						ACTGACATGCCTTCTAATAAA	0.368													21	39					0	0	0.001216	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175935	207175935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:207175935C>T	uc002vbp.2	+	5	6933	c.6683C>T	c.(6682-6684)TCG>TTG	p.S2228L		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2228							nucleic acid binding|zinc ion binding			ovary(3)	3						AAGTATATTTCGAAATACTCT	0.358													17	20					0	0	0.000743	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208693162	208693162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:208693162G>A	uc002vcl.2	-	8	2657	c.2167C>T	c.(2167-2169)CCG>TCG	p.P723S		NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	723					intracellular signal transduction		metal ion binding			ovary(1)	1						ACACACCTCGGGCAGGGGACA	0.507													13	34					0	0	0.001855	0	0
CRYGD	1421	broad.mit.edu	37	2	208986436	208986436	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:208986436G>A	uc002vcn.3	-	3	602	c.486C>T	c.(484-486)GCC>GCT	p.A162A		NM_006891	NP_008822	P07320	CRGD_HUMAN	crystallin, gamma D	162	Beta/gamma crystallin 'Greek key' 4.				cellular response to reactive oxygen species|visual perception	soluble fraction	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		AGCCCACTCTGGCATTCGTGG	0.493													16	23					0	0	0.004007	0	0
CRYGC	1420	broad.mit.edu	37	2	208994171	208994171	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:208994171G>A	uc002vco.3	-	2	284	c.246C>T	c.(244-246)ATC>ATT	p.I82I		NM_020989	NP_066269	P07315	CRGC_HUMAN	crystallin, gamma C	82	Beta/gamma crystallin 'Greek key' 2.				visual perception	cytoplasm|nucleus	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		TCACTTGGGGGATGAGACAAC	0.517													22	41					0	0	0.002299	0	0
MAP2	4133	broad.mit.edu	37	2	210559607	210559607	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:210559607C>T	uc002vde.1	+	7	2961	c.2713C>T	c.(2713-2715)CGA>TGA	p.R905*	MAP2_uc002vdc.1_Nonsense_Mutation_p.R905*|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Nonsense_Mutation_p.R901*	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	905					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	TGATAAAGTTCGAAGAGATTT	0.453													23	28					0	0	0.002299	0	0
MAP2	4133	broad.mit.edu	37	2	210570450	210570450	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:210570450C>T	uc002vde.1	+	11	4979	c.4731C>T	c.(4729-4731)ACC>ACT	p.T1577T	MAP2_uc002vdd.1_Silent_p.T278T|MAP2_uc002vdf.1_Silent_p.T221T|MAP2_uc002vdg.1_Silent_p.T221T|MAP2_uc002vdh.1_Silent_p.T278T|MAP2_uc002vdi.1_Silent_p.T1573T	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1577					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	GGCGGACCACCAGTAGGTTTA	0.363													57	78					0	0	0.003610	0	0
ERBB4	2066	broad.mit.edu	37	2	212286772	212286772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:212286772G>A	uc002veg.1	-	24	3022	c.2924C>T	c.(2923-2925)TCA>TTA	p.S975L	ERBB4_uc002veh.1_Missense_Mutation_p.S975L|ERBB4_uc010zji.1_Missense_Mutation_p.S965L|ERBB4_uc010zjj.1_Missense_Mutation_p.S965L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	975	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		AGCCATCCTTGAAAACTCAGC	0.398										TSP Lung(8;0.080)			30	39					0	0	0.003755	0	0
ERBB4	2066	broad.mit.edu	37	2	212652843	212652843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:212652843G>A	uc002veg.1	-	4	561	c.463C>T	c.(463-465)CTT>TTT	p.L155F	ERBB4_uc002veh.1_Missense_Mutation_p.L155F|ERBB4_uc010zji.1_Missense_Mutation_p.L155F|ERBB4_uc010zjj.1_Missense_Mutation_p.L155F|ERBB4_uc010fut.1_Missense_Mutation_p.L155F	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	155	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		GCATAACAAAGGAATTTGTTC	0.353										TSP Lung(8;0.080)			16	32					0	0	0.004990	0	0
SPAG16	79582	broad.mit.edu	37	2	214354721	214354721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:214354721C>T	uc002veq.2	+	10	1069	c.977C>T	c.(976-978)CCA>CTA	p.P326L	SPAG16_uc010fuz.1_Missense_Mutation_p.P177L|SPAG16_uc002ver.2_Missense_Mutation_p.P272L|SPAG16_uc010zjk.1_Missense_Mutation_p.P232L	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	326					cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		CAACCAAATCCAAACCTGAAT	0.348													28	67					0	0	0.002445	0	0
SPAG16	79582	broad.mit.edu	37	2	214354804	214354804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:214354804C>T	uc002veq.2	+	10	1152	c.1060C>T	c.(1060-1062)CCA>TCA	p.P354S	SPAG16_uc010fuz.1_Missense_Mutation_p.P205S|SPAG16_uc002ver.2_Missense_Mutation_p.P300S|SPAG16_uc010zjk.1_Missense_Mutation_p.P260S	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	354	WD 1.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		CCATGAACTTCCAGTGAGCTG	0.318													14	40					0	0	0.001855	0	0
SPAG16	79582	broad.mit.edu	37	2	214878736	214878736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:214878736C>T	uc002veq.2	+	13	1554	c.1462C>T	c.(1462-1464)CCT>TCT	p.P488S	SPAG16_uc010fuz.1_Missense_Mutation_p.P339S|SPAG16_uc002ver.2_Missense_Mutation_p.P434S|SPAG16_uc010zjk.1_Missense_Mutation_p.P394S	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	488	WD 4.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TGAGTTTTTTCCTTTCTCCAA	0.363													50	61					0	0	0.003610	0	0
ABCA12	26154	broad.mit.edu	37	2	215809828	215809828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:215809828C>T	uc002vew.2	-	49	7460	c.7240G>A	c.(7240-7242)GAT>AAT	p.D2414N	ABCA12_uc002vev.2_Missense_Mutation_p.D2096N|ABCA12_uc010zjn.1_Missense_Mutation_p.D1341N	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2414	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTCGGCTCATCCTTAATAGAA	0.363													9	20					0	0	0.004482	0	0
ABCA12	26154	broad.mit.edu	37	2	215820071	215820071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:215820071G>A	uc002vew.2	-	43	6468	c.6248C>T	c.(6247-6249)TCC>TTC	p.S2083F	ABCA12_uc002vev.2_Missense_Mutation_p.S1765F|ABCA12_uc010zjn.1_Missense_Mutation_p.S1010F	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2083	Helical; (Potential).				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GTACATCCAGGAAAATGTTGC	0.308													13	10					0	0	0.001855	0	0
ABCA12	26154	broad.mit.edu	37	2	215838741	215838741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:215838741C>T	uc002vew.2	-	36	5714	c.5494G>A	c.(5494-5496)GAA>AAA	p.E1832K	ABCA12_uc002vev.2_Missense_Mutation_p.E1514K|ABCA12_uc010zjn.1_Missense_Mutation_p.E759K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1832					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTCCATTTTTCCAGACTGTCT	0.378													17	31					0	0	0.004990	0	0
ABCA12	26154	broad.mit.edu	37	2	215855735	215855735	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:215855735C>T	uc002vew.2	-	24	3535	c.3315G>A	c.(3313-3315)GTG>GTA	p.V1105V	ABCA12_uc002vev.2_Silent_p.V787V|ABCA12_uc010zjn.1_Silent_p.V32V	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1105					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TGCAGGAGTTCACACCCATCA	0.363													19	31					0	0	0.002299	0	0
FN1	2335	broad.mit.edu	37	2	216271221	216271221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:216271221G>A	uc002vfa.2	-	19	2992	c.2726C>T	c.(2725-2727)TCT>TTT	p.S909F	FN1_uc002vfb.2_Missense_Mutation_p.S909F|FN1_uc002vfc.2_Missense_Mutation_p.S909F|FN1_uc002vfd.2_Missense_Mutation_p.S909F|FN1_uc002vfe.2_Missense_Mutation_p.S909F|FN1_uc002vff.2_Missense_Mutation_p.S909F|FN1_uc002vfg.2_Missense_Mutation_p.S909F|FN1_uc002vfh.2_Missense_Mutation_p.S909F|FN1_uc002vfi.2_Missense_Mutation_p.S909F|FN1_uc002vfj.2_Missense_Mutation_p.S909F	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	909	|Fibronectin type-III 4.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTCCCTGGGAGAGGGCACTGT	0.493													5	13					0	0	0.000602	0	0
MARCH4	57574	broad.mit.edu	37	2	217124188	217124188	+	Silent	SNP	G	A	A	rs144064965		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:217124188G>A	uc002vgb.2	-	4	2847	c.1080C>T	c.(1078-1080)GGC>GGT	p.G360G		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	360						Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		CCTGGGCAGGGCCCTGCTCAG	0.642													24	23					0	0	0.005443	0	0
TNS1	7145	broad.mit.edu	37	2	218682809	218682809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:218682809G>A	uc002vgt.2	-	24	4332	c.3934C>T	c.(3934-3936)CCC>TCC	p.P1312S	TNS1_uc002vgr.2_Missense_Mutation_p.P1299S|TNS1_uc002vgs.2_Missense_Mutation_p.P1291S|TNS1_uc010zjv.1_Missense_Mutation_p.P1291S	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1312						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GGGCTGCCGGGAACCACAGAT	0.632													8	13					0	0	0.004482	0	0
CXCR1	3577	broad.mit.edu	37	2	219029809	219029809	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219029809C>T	uc002vhc.2	-	2	245	c.126G>A	c.(124-126)GTG>GTA	p.V42V		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	42	Helical; Name=1; (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						AGGCGATGATCACAACATACT	0.498													30	68					0	0	0.001786	0	0
PNKD	25953	broad.mit.edu	37	2	219206854	219206854	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219206854C>T	uc002vhn.2	+	7	912	c.768C>T	c.(766-768)TTC>TTT	p.F256F	PNKD_uc002vhq.2_Silent_p.F232F	NM_015488	NP_056303	Q8N490	PNKD_HUMAN	myofibrillogenesis regulator 1 isoform 1	256						membrane|mitochondrion|nucleus	hydroxyacylglutathione hydrolase activity|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;7.33e-07)|all cancers(144;0.000133)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACCTGCTCTTCCTCTCTGGCT	0.607													8	20					0	0	0.000673	0	0
C2orf62	375307	broad.mit.edu	37	2	219222789	219222789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219222789G>A	uc002vhr.2	+	4	378	c.349G>A	c.(349-351)GAA>AAA	p.E117K	C2orf62_uc002vhs.2_RNA	NM_198559	NP_940961	Q7Z7H3	CB062_HUMAN	hypothetical protein LOC375307	117											0		Renal(207;0.0915)		Epithelial(149;8.08e-07)|all cancers(144;0.000146)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGAGCTCATGGAACAGCACAG	0.532													30	50					0	0	0.001786	0	0
C2orf62	375307	broad.mit.edu	37	2	219232241	219232241	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219232241G>T	uc002vhr.2	+	9	950	c.921G>T	c.(919-921)AAG>AAT	p.K307N	C2orf62_uc002vhs.2_RNA|uc002vht.2_Intron	NM_198559	NP_940961	Q7Z7H3	CB062_HUMAN	hypothetical protein LOC375307	307											0		Renal(207;0.0915)		Epithelial(149;8.08e-07)|all cancers(144;0.000146)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGACCGGAAGGTGAGGGGAG	0.547													23	41					1.37878e-21	2.39705e-21	0.003330	1	0
ZNF142	7701	broad.mit.edu	37	2	219520896	219520896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219520896G>A	uc002vin.2	-	4	693	c.257C>T	c.(256-258)CCA>CTA	p.P86L	ZNF142_uc002vil.2_5'UTR|ZNF142_uc010fvt.2_5'UTR|ZNF142_uc002vim.2_5'UTR|BCS1L_uc002vio.2_5'Flank	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	86					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		AGGAGCACCTGGGGTCAGGGT	0.537													13	22					0	0	0.002450	0	0
ZNF142	7701	broad.mit.edu	37	2	219521062	219521062	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219521062G>T	uc002vin.2	-	4	527	c.91C>A	c.(91-93)CTC>ATC	p.L31I	ZNF142_uc002vil.2_5'UTR|ZNF142_uc010fvt.2_5'UTR|ZNF142_uc002vim.2_5'UTR|BCS1L_uc002vio.2_5'Flank	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	31					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CGGTTAGAGAGAGGCGGGGGG	0.622													11	18					1.58986e-06	2.74276e-06	0.000673	1	0
STK36	27148	broad.mit.edu	37	2	219553520	219553520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219553520C>T	uc002viu.2	+	12	1747	c.1481C>T	c.(1480-1482)TCC>TTC	p.S494F	STK36_uc002viv.2_Missense_Mutation_p.S494F	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	494					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GCCTTGTATTCCTTCTGCCGG	0.582													28	41					0	0	0.005443	0	0
STK36	27148	broad.mit.edu	37	2	219557366	219557366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219557366C>T	uc002viu.2	+	16	2242	c.1976C>T	c.(1975-1977)TCC>TTC	p.S659F	STK36_uc002viv.2_Missense_Mutation_p.S659F|STK36_uc002viw.2_5'Flank	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	659					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GGAGCCATTTCCTCTGCCCTG	0.572													7	13					0	0	0.003080	0	0
CCDC108	255101	broad.mit.edu	37	2	219903154	219903154	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219903154G>A	uc002vjl.1	-	4	384	c.300C>T	c.(298-300)ATC>ATT	p.I100I	CCDC108_uc010zkp.1_Silent_p.I89I|CCDC108_uc010zkq.1_Silent_p.I35I|CCDC108_uc002vjn.2_Silent_p.I35I	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	100						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGATGGCAGGGATGGCCACTG	0.517													14	21					0	0	0.003163	0	0
CCDC108	255101	broad.mit.edu	37	2	219903697	219903697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219903697G>A	uc002vjl.1	-	3	158	c.74C>T	c.(73-75)TCT>TTT	p.S25F	CCDC108_uc010zkp.1_Intron|CCDC108_uc010zkq.1_Intron|CCDC108_uc002vjn.2_Intron	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	25						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGGAAAGAAGAGGCAAATGA	0.408													15	34					0	0	0.002450	0	0
CCDC108	255101	broad.mit.edu	37	2	219903722	219903722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:219903722C>T	uc002vjl.1	-	3	133	c.49G>A	c.(49-51)GAG>AAG	p.E17K	CCDC108_uc010zkp.1_Intron|CCDC108_uc010zkq.1_Intron|CCDC108_uc002vjn.2_Intron	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	17						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GATGGATTCTCCACCTTCTGG	0.433													20	17					0	0	0.001523	0	0
ATG9A	79065	broad.mit.edu	37	2	220088932	220088932	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:220088932G>C	uc002vke.1	-	8	1347	c.1161C>G	c.(1159-1161)ATC>ATG	p.I387M	ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Missense_Mutation_p.I387M	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	387	Helical; (Potential).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCACAGCCAGGATGGAGCCAG	0.537													58	88					0	0	0.003610	0	0
DES	1674	broad.mit.edu	37	2	220286069	220286069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:220286069C>T	uc002vll.2	+	6	1117	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F		NM_001927	NP_001918	P17661	DESM_HUMAN	desmin	344	Rod.|Coil 2B.				cytoskeleton organization|muscle filament sliding|regulation of heart contraction	cytosol|Z disc	protein binding|structural constituent of cytoskeleton			central_nervous_system(2)	2		Renal(207;0.0183)		Epithelial(149;5.25e-07)|all cancers(144;0.000103)|Lung(261;0.00533)|LUSC - Lung squamous cell carcinoma(224;0.008)		CAGAACGATTCCCTGATGAGG	0.582													15	28					0	0	0.001523	0	0
SPEG	10290	broad.mit.edu	37	2	220338338	220338338	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:220338338C>T	uc010fwg.2	+	17	4260	c.4260C>T	c.(4258-4260)GTC>GTT	p.V1420V		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1420	Ig-like 7.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		AGGCCCAGGTCGTCTGGAGGA	0.632													42	92					0	0	0.003610	0	0
SPEG	10290	broad.mit.edu	37	2	220353270	220353270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:220353270G>A	uc010fwg.2	+	33	7909	c.7909G>A	c.(7909-7911)GAT>AAT	p.D2637N		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2637	Ig-like 9.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GTCCTGCAAAGATGGGCGGCA	0.622													24	28					0	0	0.003954	0	0
EPHA4	2043	broad.mit.edu	37	2	222291234	222291234	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:222291234G>A	uc002vmq.2	-	16	2838	c.2796C>T	c.(2794-2796)TTC>TTT	p.F932F	EPHA4_uc002vmr.2_Silent_p.F932F|EPHA4_uc010zlm.1_Silent_p.F873F|EPHA4_uc010zln.1_Silent_p.F932F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	932	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity	p.F932F(2)		lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CAGCAGCTGTGAAGTTATCCT	0.463													29	20					0	0	0.002096	0	0
CCDC140	151278	broad.mit.edu	37	2	223168963	223168963	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:223168963C>T	uc002vnb.1	+	2	726	c.342C>T	c.(340-342)TCC>TCT	p.S114S		NM_153038	NP_694583	Q96MF4	CC140_HUMAN	coiled-coil domain containing 140	114											0		Renal(207;0.0376)		Epithelial(121;4.03e-10)|all cancers(144;1.8e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCGCACAGTCCACAGACCCCG	0.587													9	16					0	0	0.000673	0	0
DOCK10	55619	broad.mit.edu	37	2	225670001	225670001	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:225670001G>A	uc010fwz.1	-	36	4212	c.3973C>T	c.(3973-3975)CGA>TGA	p.R1325*	DOCK10_uc002vob.2_Nonsense_Mutation_p.R1319*|DOCK10_uc002voa.2_5'UTR|DOCK10_uc002voc.2_Nonsense_Mutation_p.R179*	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1325							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TTGTCAAATCGAAGAGTTGAG	0.398													53	92					0	0	0.003610	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447152	226447152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:226447152C>T	uc002voe.2	+	4	1194	c.1019C>T	c.(1018-1020)CCC>CTC	p.P340L	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.P110L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	340	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		CTGGTATTTCCCCCCGCCCCC	0.627													11	11					0	0	0.000978	0	0
RHBDD1	84236	broad.mit.edu	37	2	227731934	227731934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:227731934C>T	uc002voi.2	+	3	587	c.466C>T	c.(466-468)CAT>TAT	p.H156Y	RHBDD1_uc010fxc.2_Missense_Mutation_p.H156Y	NM_032276	NP_115652	Q8TEB9	RHBD1_HUMAN	rhomboid domain containing 1	156	Helical; (Potential).					integral to membrane	serine-type endopeptidase activity			ovary(1)	1		Renal(207;0.023)|all_lung(227;0.13)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;1.47e-11)|all cancers(144;1.52e-08)|Lung(261;0.0128)|LUSC - Lung squamous cell carcinoma(224;0.0175)		TCTTAACAACCATTATTGCCC	0.373													30	64					0	0	0.001271	0	0
COL4A4	1286	broad.mit.edu	37	2	227953465	227953465	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:227953465C>T	uc010zlt.1	-	22	2181	c.1527G>A	c.(1525-1527)GGG>GGA	p.G509G		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	509	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCCCTGCCTCCCAGGAAGTC	0.587													28	26					0	0	0.001271	0	0
COL4A4	1286	broad.mit.edu	37	2	227963448	227963449	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:227963448_227963449GG>AA	uc010zlt.1	-	19	1819_1820	c.1165_1166CC>TT	c.(1165-1167)CCC>TTC	p.P389F		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	389	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GAGACCTGGGGGACCAGGTGGT	0.554													11	26					0	0	0.004672	0	0
COL4A4	1286	broad.mit.edu	37	2	227968695	227968695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:227968695C>T	uc010zlt.1	-	13	1463	c.809G>A	c.(808-810)GGA>GAA	p.G270E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	270	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TACCTTTTCTCCTTTATAGAG	0.388													18	26					0	0	0.001523	0	0
COL4A3	1285	broad.mit.edu	37	2	228137698	228137698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228137698C>T	uc002vom.1	+	26	1954	c.1792C>T	c.(1792-1794)CCA>TCA	p.P598S	COL4A3_uc002von.1_Missense_Mutation_p.P598S|COL4A3_uc002voo.1_Missense_Mutation_p.P598S|COL4A3_uc002vop.1_Missense_Mutation_p.P598S|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	598	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		CCAAGGTCCTCCAGGGGATCC	0.562													16	24					0	0	0.004990	0	0
COL4A3	1285	broad.mit.edu	37	2	228148571	228148571	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228148571G>A	uc002vom.1	+	33	2907	c.2745G>A	c.(2743-2745)AGG>AGA	p.R915R	COL4A3_uc002von.1_Silent_p.R915R|COL4A3_uc002voo.1_Silent_p.R915R|COL4A3_uc002vop.1_Silent_p.R915R|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	915	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		CAGGGCAGAGGGGTAAGTGAT	0.453													26	51					0	0	0.003954	0	0
MFF	56947	broad.mit.edu	37	2	228205011	228205011	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228205011C>T	uc002vos.2	+	6	851	c.433C>T	c.(433-435)CGA>TGA	p.R145*	MFF_uc002vot.2_Nonsense_Mutation_p.R119*|MFF_uc002vou.2_Nonsense_Mutation_p.R145*|MFF_uc002vov.2_Nonsense_Mutation_p.R119*|MFF_uc002vow.2_Nonsense_Mutation_p.R119*|MFF_uc002vox.2_Nonsense_Mutation_p.R119*|MFF_uc002voy.2_Nonsense_Mutation_p.R145*|MFF_uc002voz.2_Nonsense_Mutation_p.R119*	NM_020194	NP_064579	Q9GZY8	MFF_HUMAN	mitochondrial fission factor	145	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane				large_intestine(1)	1						TTAACAGATCCGAGCAGTTGG	0.423													14	34					0	0	0.001855	0	0
WDR69	164781	broad.mit.edu	37	2	228771902	228771902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228771902G>A	uc002vpn.1	+	10	986	c.907G>A	c.(907-909)GAT>AAT	p.D303N	WDR69_uc010zlw.1_Missense_Mutation_p.D288N|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	303	WD 6.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		AACAGGCCATGATGATGAAAT	0.358													16	21					0	0	0.004990	0	0
SPHKAP	80309	broad.mit.edu	37	2	228846528	228846528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228846528C>T	uc002vpq.2	-	12	5055	c.5008G>A	c.(5008-5010)GAT>AAT	p.D1670N	SPHKAP_uc002vpp.2_Missense_Mutation_p.D1641N|SPHKAP_uc010zlx.1_3'UTR	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1670						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGGAAGATATCACCCACTTTC	0.478													25	27					0	0	0.005443	0	0
SPHKAP	80309	broad.mit.edu	37	2	228860355	228860355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228860355C>T	uc002vpq.2	-	8	4551	c.4504G>A	c.(4504-4506)GCC>ACC	p.A1502T	SPHKAP_uc002vpp.2_Missense_Mutation_p.A1502T|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1502						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCATCGGGGGCTCTGGCTTCT	0.557													11	17					0	0	0.000673	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881913	228881913	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228881913C>T	uc002vpq.2	-	7	3704	c.3657G>A	c.(3655-3657)TGG>TGA	p.W1219*	SPHKAP_uc002vpp.2_Nonsense_Mutation_p.W1219*|SPHKAP_uc010zlx.1_Nonsense_Mutation_p.W1219*	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1219						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGCCGGCTGTCCAATCCTGGC	0.572													25	37					0	0	0.003954	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882225	228882225	+	Silent	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228882225A>C	uc002vpq.2	-	7	3392	c.3345T>G	c.(3343-3345)TCT>TCG	p.S1115S	SPHKAP_uc002vpp.2_Silent_p.S1115S|SPHKAP_uc010zlx.1_Silent_p.S1115S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1115						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GCTTGGAGACAGAGCTGGCCC	0.552													13	19					0	0	0.002450	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884841	228884841	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:228884841A>T	uc002vpq.2	-	7	776	c.729T>A	c.(727-729)GTT>GTA	p.V243V	SPHKAP_uc002vpp.2_Silent_p.V243V|SPHKAP_uc010zlx.1_Silent_p.V243V	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	243						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TACTTTCCAAAACATTGGCTG	0.363													43	82					0	0	0.002222	0	0
PID1	55022	broad.mit.edu	37	2	229890639	229890639	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:229890639G>A	uc002vpr.3	-	3	500	c.462C>T	c.(460-462)GCC>GCT	p.A154A	PID1_uc002vps.3_Silent_p.A152A|PID1_uc002vpt.3_Silent_p.A121A|PID1_uc002vpu.3_Silent_p.A72A	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	154	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		TGTGCACTGTGGCCTCCCCTT	0.592													29	42					0	0	0.005443	0	0
PID1	55022	broad.mit.edu	37	2	229890678	229890678	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:229890678G>A	uc002vpr.3	-	3	461	c.423C>T	c.(421-423)TTC>TTT	p.F141F	PID1_uc002vps.3_Silent_p.F139F|PID1_uc002vpt.3_Silent_p.F108F|PID1_uc002vpu.3_Silent_p.F59F	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	141	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		GCCAAACTTGGAATGGCCGGA	0.582													25	35					0	0	0.004656	0	0
SLC16A14	151473	broad.mit.edu	37	2	230910951	230910951	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:230910951G>A	uc002vqd.1	-	4	1254	c.891C>T	c.(889-891)TTC>TTT	p.F297F	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.F297F|SLC16A14_uc002vqf.2_Silent_p.F297F	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	297	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		ACCAGTCCTCGAAGCCCTTCC	0.517													18	17					0	0	0.000958	0	0
SP140L	93349	broad.mit.edu	37	2	231248225	231248225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:231248225G>A	uc010fxm.1	+	8	729	c.638G>A	c.(637-639)AGA>AAA	p.R213K	SP140L_uc010fxo.1_Missense_Mutation_p.R20K	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	213						nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						TGGTTTGAAGGAAAAAAGAAG	0.343													3	4					0	0	0.004672	0	0
SP140L	93349	broad.mit.edu	37	2	231256802	231256802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:231256802G>A	uc010fxm.1	+	12	1056	c.965G>A	c.(964-966)GGA>GAA	p.G322E	SP140L_uc010fxo.1_Missense_Mutation_p.G94E	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	322	SAND.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						GGTCTTACAGGAACCTTGGCA	0.488													19	28					0	0	0.001523	0	0
SP100	6672	broad.mit.edu	37	2	231404077	231404077	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:231404077C>T	uc002vqu.1	+	25	2331	c.2190C>T	c.(2188-2190)ATC>ATT	p.I730I	SP100_uc010fxp.1_Silent_p.I48I	NM_001080391	NP_001073860	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		ACTGCCACATCCCATCCGTGG	0.507													17	28					0	0	0.001216	0	0
B3GNT7	93010	broad.mit.edu	37	2	232262809	232262809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:232262809C>T	uc002vrs.2	+	2	559	c.379C>T	c.(379-381)CCG>TCG	p.P127S		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	127	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		GCTGAACCACCCGGAGAAGTG	0.642													9	20					0	0	0.000673	0	0
CHRND	1144	broad.mit.edu	37	2	233396114	233396114	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:233396114C>G	uc002vsw.2	+	8	877	c.873C>G	c.(871-873)TTC>TTG	p.F291L	CHRND_uc010zmg.1_Missense_Mutation_p.F276L|CHRND_uc010fyc.2_Missense_Mutation_p.F164L|CHRND_uc010zmh.1_Missense_Mutation_p.F97L	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	291	Helical; (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		AGTCTGTCTTCCTGCTGCTCA	0.612													13	30					0	0	0.004990	0	0
NGEF	25791	broad.mit.edu	37	2	233839538	233839538	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:233839538C>T	uc002vts.2	-	2	311	c.63G>A	c.(61-63)TGG>TGA	p.W21*		NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	21	Regulatory region; modulates activity toward RHOA, RAC1 and CDC42 (By similarity).				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		TATCAGTGTTCCATTGATCAC	0.453													33	60					0	0	0.002836	0	0
INPP5D	3635	broad.mit.edu	37	2	234079718	234079718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:234079718G>A	uc010zmo.1	+	16	2062	c.1909G>A	c.(1909-1911)GAA>AAA	p.E637K	INPP5D_uc010zmp.1_Missense_Mutation_p.E636K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	637					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		AGAGGAGGAAGAAATCACGTT	0.463													6	11					0	0	0.001984	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545533	234545533	+	Missense_Mutation	SNP	C	T	T	rs145610800		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:234545533C>T	uc002vur.2	+	1	411	c.365C>T	c.(364-366)TCG>TTG	p.S122L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.S122L	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	122					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		TTATTTTTTTCGCATTGCAGG	0.363													43	80					0	0	0.003610	0	0
UGT1A9	54600	broad.mit.edu	37	2	234580735	234580735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:234580735G>A	uc002vus.2	+	1	192	c.155G>A	c.(154-156)GGG>GAG	p.G52E	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.G52E	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	52					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	ATTCTCAGGGGGCATGAGGTG	0.522													28	36					0	0	0.001786	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652218	234652218	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:234652218C>T	uc002vuz.2	-	1	444	c.345G>A	c.(343-345)TTG>TTA	p.L115L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	115					protein folding		heat shock protein binding|unfolded protein binding				0						GCGGGTTTCCCAAGAGGTCAA	0.572													18	30					0	0	0.001216	0	0
SPP2	6694	broad.mit.edu	37	2	234969093	234969093	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:234969093C>T	uc002vvk.1	+	4	499	c.414C>T	c.(412-414)TCC>TCT	p.S138S	SPP2_uc010fyl.1_Silent_p.S58S	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	138					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		GCTGGTCCTCCTCCACGTCTG	0.567													20	24					0	0	0.001523	0	0
IQCA1	79781	broad.mit.edu	37	2	237233337	237233337	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:237233337C>T	uc002vvz.1	-	19	2645	c.2463G>A	c.(2461-2463)AGG>AGA	p.R821R	IQCA1_uc002vwb.2_Silent_p.R829R|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Silent_p.R780R	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	821							ATP binding			ovary(1)	1						tcttttatttccttttccctt	0.333													8	7					0	0	0.003080	0	0
IQCA1	79781	broad.mit.edu	37	2	237405839	237405839	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:237405839G>A	uc002vvz.1	-	2	485	c.303C>T	c.(301-303)TTC>TTT	p.F101F	IQCA1_uc002vwb.2_Silent_p.F108F|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Silent_p.F101F	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	101							ATP binding			ovary(1)	1						GGATATCATCGAAATAATGGA	0.453													9	8					0	0	0.000673	0	0
CXCR7	57007	broad.mit.edu	37	2	237489273	237489273	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:237489273C>T	uc010fyq.2	+	3	395	c.165C>T	c.(163-165)TTC>TTT	p.F55F	CXCR7_uc002vwd.2_Silent_p.F55F	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	55	Helical; Name=1; (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		TTTTCATCTTCGTCATCGGCA	0.522													4	7					0	0	0.000248	0	0
CXCR7	57007	broad.mit.edu	37	2	237490196	237490196	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:237490196G>A	uc010fyq.2	+	3	1318	c.1088G>A	c.(1087-1089)TGA>TAA	p.*363*	CXCR7_uc002vwd.2_Silent_p.*363*	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	363					interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		AGCACCAAATGATCTGCCCTG	0.512													17	25					0	0	0.000958	0	0
COL6A3	1293	broad.mit.edu	37	2	238275624	238275624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:238275624C>T	uc002vwl.2	-	11	5491	c.5206G>A	c.(5206-5208)GGC>AGC	p.G1736S	COL6A3_uc002vwo.2_Missense_Mutation_p.G1530S|COL6A3_uc010znj.1_Missense_Mutation_p.G1129S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1736	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGGCGGCTGCCTGCCTCAGGC	0.577													13	30					0	0	0.003163	0	0
COL6A3	1293	broad.mit.edu	37	2	238277429	238277429	+	Silent	SNP	G	A	A	rs147215386		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:238277429G>A	uc002vwl.2	-	10	4962	c.4677C>T	c.(4675-4677)TTC>TTT	p.F1559F	COL6A3_uc002vwo.2_Silent_p.F1353F|COL6A3_uc010znj.1_Silent_p.F952F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1559	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCACCTGGGCGAACCTGGACA	0.572													27	40					0	0	0.004656	0	0
LRRFIP1	9208	broad.mit.edu	37	2	238628209	238628209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:238628209C>T	uc002vxe.2	+	3	489	c.197C>T	c.(196-198)TCG>TTG	p.S66L	LRRFIP1_uc002vxc.2_Missense_Mutation_p.S98L|LRRFIP1_uc010znm.1_Intron|LRRFIP1_uc002vxd.2_Missense_Mutation_p.S66L|LRRFIP1_uc002vxf.2_Intron	NM_001137552	NP_001131024	Q32MZ4	LRRF1_HUMAN	leucine rich repeat (in FLII) interacting	66					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|cytoskeleton|nucleus	DNA binding|double-stranded RNA binding|protein binding			breast(3)	3		Breast(86;0.00257)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;9.75e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.01e-10)|Kidney(56;4.85e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.31e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000151)|Lung(119;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0325)|COAD - Colon adenocarcinoma(134;0.228)		AGAAACACATCGGTTAGTACC	0.373													14	21					0	0	0.002450	0	0
UBE2F	140739	broad.mit.edu	37	2	238939237	238939237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:238939237C>T	uc002vxk.2	+	7	485	c.394C>T	c.(394-396)CCC>TCC	p.P132S	UBE2F_uc010znn.1_Missense_Mutation_p.P100S|UBE2F_uc002vxl.2_RNA|UBE2F_uc010zno.1_RNA|UBE2F_uc010znp.1_Intron|SCLY_uc002vxm.3_5'UTR	NM_080678	NP_542409	Q969M7	UBE2F_HUMAN	NEDD8-conjugating enzyme	132					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding				0		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;6.7e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|Kidney(56;3.53e-09)|KIRC - Kidney renal clear cell carcinoma(57;9.79e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000136)|Lung(119;0.0126)|LUSC - Lung squamous cell carcinoma(224;0.0301)		TGGCTGGGCTCCCACAAGAAC	0.507													10	8					0	0	0.001855	0	0
PER2	8864	broad.mit.edu	37	2	239162201	239162201	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:239162201G>A	uc002vyc.2	-	19	2700	c.2463C>T	c.(2461-2463)CCC>CCT	p.P821P	PER2_uc010znv.1_Silent_p.P821P	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	821					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		CCACCAGCGGGGGCCGGGCGG	0.612													10	12					0	0	0.000673	0	0
PER2	8864	broad.mit.edu	37	2	239167210	239167210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:239167210G>A	uc002vyc.2	-	15	1940	c.1703C>T	c.(1702-1704)CCC>CTC	p.P568L	PER2_uc010znv.1_Missense_Mutation_p.P568L	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	568	CSNK1E binding domain (By similarity).				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		CAACTCCTCGGGGAAGCTGAC	0.547													15	23					0	0	0.002450	0	0
PER2	8864	broad.mit.edu	37	2	239168678	239168679	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:239168678_239168679CC>TT	uc002vyc.2	-	14	1795_1796	c.1558_1559GG>AA	c.(1558-1560)GGT>AAT	p.G520N	PER2_uc010znv.1_Missense_Mutation_p.G520N	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	520					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GGTCTTGTTACCATTTTTACAA	0.332													5	10					0	0	0.004672	0	0
HDAC4	9759	broad.mit.edu	37	2	240056275	240056275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:240056275G>A	uc002vyk.3	-	10	1835	c.1043C>T	c.(1042-1044)TCG>TTG	p.S348L	HDAC4_uc010fyz.1_Missense_Mutation_p.S343L|HDAC4_uc010zoa.1_Missense_Mutation_p.S343L|HDAC4_uc010fza.2_Missense_Mutation_p.S348L|HDAC4_uc010fyy.2_Missense_Mutation_p.S300L|HDAC4_uc010znz.1_Missense_Mutation_p.S231L|HDAC4_uc010fzb.1_RNA	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	348					B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		CAAGGATGGCGATGTGTAGAG	0.632													12	20					0	0	0.001368	0	0
OTOS	150677	broad.mit.edu	37	2	241078729	241078729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:241078729G>A	uc002vyv.2	-	4	283	c.128C>T	c.(127-129)TCC>TTC	p.S43F	MYEOV2_uc002vyu.1_5'Flank|MYEOV2_uc010zof.1_5'Flank	NM_148961	NP_683764	Q8NHW6	OTOSP_HUMAN	otospiralin precursor	43						extracellular region					0		all_epithelial(40;2.79e-15)|Breast(86;3.04e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0396)|Lung NSC(271;0.128)|Hepatocellular(293;0.148)|all_hematologic(139;0.158)|Melanoma(123;0.16)		Epithelial(32;2.56e-30)|all cancers(36;7.18e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.37e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.07e-06)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		GTCAGAGGTGGAGAAAGGCCA	0.617													18	40					0	0	0.001216	0	0
KIF1A	547	broad.mit.edu	37	2	241683418	241683418	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:241683418G>A	uc002vzy.2	-	31	3368	c.3222C>T	c.(3220-3222)TTC>TTT	p.F1074F	KIF1A_uc010fzk.2_Silent_p.F1175F|KIF1A_uc002vzz.1_Silent_p.F1175F	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1074					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CAAAGACCTCGAAAACAATGG	0.627													49	78					0	0	0.003610	0	0
AGXT	189	broad.mit.edu	37	2	241808728	241808728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:241808728G>A	uc002waa.3	+	2	428	c.307G>A	c.(307-309)GGG>AGG	p.G103R	AGXT_uc010zoi.1_Missense_Mutation_p.G103R	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	103					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CTTCCTGGTTGGGGCCAATGG	0.642													22	36					0	0	0.004656	0	0
AGXT	189	broad.mit.edu	37	2	241815352	241815352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:241815352G>A	uc002waa.3	+	8	898	c.777G>A	c.(775-777)ATG>ATA	p.M259I	AGXT_uc002wab.3_5'Flank	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	259					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	TGTCTTCCAGGTACCATCACA	0.612													9	8					0	0	0.000443	0	0
C2orf54	79919	broad.mit.edu	37	2	241830990	241830991	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:241830990_241830991CC>TT	uc002wae.3	-	2	863_864	c.704_705GG>AA	c.(703-705)GGG>GAA	p.G235E	C2orf54_uc002wac.2_Missense_Mutation_p.G67E|C2orf54_uc002wad.2_Missense_Mutation_p.G86E	NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	235											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		CCAGGTCCACCCCTTGGCTGAG	0.678													25	25					0	0	0.004672	0	0
SNED1	25992	broad.mit.edu	37	2	242003009	242003009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:242003009G>A	uc002wah.1	+	18	2377	c.2377G>A	c.(2377-2379)GAT>AAT	p.D793N	SNED1_uc002wai.1_Missense_Mutation_p.D28N|SNED1_uc002waj.1_5'Flank|SNED1_uc002wak.2_5'Flank	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	793	EGF-like 12; calcium-binding (Potential).				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		TGCAGAGAGGGATGAGTGCCG	0.612													5	7					0	0	0.000602	0	0
ANO7	50636	broad.mit.edu	37	2	242152025	242152025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:242152025G>A	uc002wax.2	+	17	1977	c.1874G>A	c.(1873-1875)GGA>GAA	p.G625E		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	625	Extracellular (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						ACCTTGTTTGGAGTCCGCAAT	0.532													10	13					0	0	0.001368	0	0
PDCD1	5133	broad.mit.edu	37	2	242793338	242793338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:242793338C>T	uc002wcq.3	-	5	807	c.739G>A	c.(739-741)GAG>AAG	p.E247K	PDCD1_uc010fzs.2_Missense_Mutation_p.E126K|PDCD1_uc010fzt.2_RNA	NM_005018	NP_005009	Q15116	PDCD1_HUMAN	programmed cell death 1 precursor	247	Cytoplasmic (Potential).				apoptosis|humoral immune response|multicellular organismal development|T cell costimulation	integral to membrane	protein tyrosine phosphatase activity|signal transducer activity			ovary(1)	1		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0219)		GTGGCATACTCCGTCTGCTCA	0.647													16	26					0	0	0.000743	0	0
PDYN	5173	broad.mit.edu	37	20	1961277	1961277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:1961277C>T	uc010gaj.2	-	3	699	c.457G>A	c.(457-459)GAT>AAT	p.D153N	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.D153N|PDYN_uc010zpt.1_5'UTR	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	153					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						ATGGCACCATCGTTCAGCTGG	0.572													6	41					0	0	0.001984	0	0
PDYN	5173	broad.mit.edu	37	20	1961313	1961313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:1961313C>T	uc010gaj.2	-	3	663	c.421G>A	c.(421-423)GCA>ACA	p.A141T	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.A141T|PDYN_uc010zpt.1_Intron	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	141					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						TCAGACTCTGCTCCCTCCCTA	0.547													29	18					0	0	0.002445	0	0
TGM3	7053	broad.mit.edu	37	20	2293547	2293547	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:2293547G>T	uc002wfx.3	+	5	641	c.544G>T	c.(544-546)GAA>TAA	p.E182*		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	182					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TGAACAGTTTGAAGAAGACAT	0.453													42	36					7.05377e-20	1.22557e-19	0.003610	1	0
TGM3	7053	broad.mit.edu	37	20	2293571	2293571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:2293571C>T	uc002wfx.3	+	5	665	c.568C>T	c.(568-570)CTC>TTC	p.L190F		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	190					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CAGCATCTGCCTCTCAATCTT	0.473													41	35					0	0	0.003610	0	0
TGM6	343641	broad.mit.edu	37	20	2384129	2384129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:2384129C>T	uc002wfy.1	+	8	1137	c.1076C>T	c.(1075-1077)CCC>CTC	p.P359L	TGM6_uc010gal.1_Missense_Mutation_p.P359L	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	359					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GATGCCACCCCCCAGGAGGAG	0.582													19	6					0	0	0.000958	0	0
TGM6	343641	broad.mit.edu	37	20	2411657	2411657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:2411657G>A	uc002wfy.1	+	12	2012	c.1951G>A	c.(1951-1953)GAA>AAA	p.E651K	TGM6_uc010gal.1_Intron	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	651					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	CCTTCTCCAGGAACAGCTCAG	0.592													23	14					0	0	0.003954	0	0
SNRPB	6628	broad.mit.edu	37	20	2443766	2443766	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:2443766G>A	uc002wfz.1	-	5	691	c.528C>T	c.(526-528)CCC>CCT	p.P176P	SNRPB_uc002wga.1_Silent_p.P176P|SNRPB_uc010zpv.1_Silent_p.P97P|SNRPB_uc002wgb.2_Silent_p.P176P|SNORD119_uc010gam.1_5'Flank	NM_198216	NP_937859	P14678	RSMB_HUMAN	small nuclear ribonucleoprotein polypeptide B/B'	176	|Repeat-rich region.				histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|protein binding|RNA binding			ovary(1)	1						CCATAGGTGGGGGAGGACCCC	0.587													6	72					0	0	0.001984	0	0
SLC4A11	83959	broad.mit.edu	37	20	3218250	3218250	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:3218250A>T	uc002wig.2	-	1	124	c.76T>A	c.(76-78)TCT>ACT	p.S26T	SLC4A11_uc010zqe.1_Intron|SLC4A11_uc002wih.2_Intron|SLC4A11_uc010zqf.1_Intron	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	26	Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						AGGGAAGCAGAAAGGTCACCA	0.577													5	44					0	0	0.001984	0	0
ADAM33	80332	broad.mit.edu	37	20	3650192	3650192	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:3650192C>T	uc002wit.2	-	20	2419	c.2332_splice	c.e20+1	p.D778_splice	ADAM33_uc002wiq.1_Intron|ADAM33_uc002wir.1_Splice_Site_p.D778_splice|ADAM33_uc002wis.2_Splice_Site_p.D274_splice|ADAM33_uc002wiu.2_Splice_Site_p.D752_splice	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha						proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GCCTCACTCACCCAGGGGCCA	0.662													7	5					0	0	0.004482	0	0
ADAM33	80332	broad.mit.edu	37	20	3651711	3651711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:3651711G>A	uc002wit.2	-	19	2269	c.2182C>T	c.(2182-2184)CCA>TCA	p.P728S	ADAM33_uc002wiq.1_5'Flank|ADAM33_uc002wir.1_Missense_Mutation_p.P728S|ADAM33_uc002wis.2_Missense_Mutation_p.P224S|ADAM33_uc002wiu.2_Missense_Mutation_p.P702S|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_RNA	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	728	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						TGGGCTCCTGGGAGTCGGTAG	0.662													6	0					0	0	0.003080	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3683869	3683869	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:3683869C>T	uc002wja.2	-	5	1203	c.1203G>A	c.(1201-1203)TCG>TCA	p.S401S	SIGLEC1_uc002wiz.3_Silent_p.S401S|SIGLEC1_uc002wjc.2_Silent_p.S312S	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	401	Extracellular (Potential).|Ig-like C2-type 3.				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						TGACAGGGCCCGAGCGCTCGC	0.617													11	9					0	0	0.001855	0	0
SMOX	54498	broad.mit.edu	37	20	4155735	4155735	+	Silent	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:4155735G>C	uc002wkm.1	+	2	234	c.33G>C	c.(31-33)GCG>GCC	p.A11A	SMOX_uc002wkk.1_Silent_p.A11A|SMOX_uc002wkl.1_Silent_p.A11A|SMOX_uc002wkn.1_Silent_p.A11A|SMOX_uc002wkp.2_Silent_p.A11A|SMOX_uc010zqo.1_Silent_p.A11A|SMOX_uc002wko.1_Silent_p.A11A	NM_175839	NP_787033	Q9NWM0	SMOX_HUMAN	spermine oxidase isoform 1	11					polyamine biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	polyamine oxidase activity			breast(1)	1					Spermine(DB00127)	GTGACAGTGCGGATGACCCTC	0.612													3	64					0	0	0.000602	0	0
PROKR2	128674	broad.mit.edu	37	20	5283203	5283203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:5283203G>A	uc010zqw.1	-	2	638	c.638C>T	c.(637-639)CCT>CTT	p.P213L	PROKR2_uc010zqx.1_Missense_Mutation_p.P213L|PROKR2_uc010zqy.1_Missense_Mutation_p.P213L	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	213	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CTGATCCACAGGCCAGATCTG	0.512										HNSCC(71;0.22)			9	60					0	0	0.000673	0	0
PROKR2	128674	broad.mit.edu	37	20	5294603	5294603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:5294603G>A	uc010zqw.1	-	1	413	c.413C>T	c.(412-414)TCC>TTC	p.S138F	PROKR2_uc010zqx.1_Missense_Mutation_p.S138F|PROKR2_uc010zqy.1_Missense_Mutation_p.S138F|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	138	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GACGTAGAGGGAGACGGTGCG	0.612										HNSCC(71;0.22)			8	8					0	0	0.003080	0	0
PLCB1	23236	broad.mit.edu	37	20	8639267	8639267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:8639267G>A	uc002wnb.2	+	9	781	c.778G>A	c.(778-780)GAA>AAA	p.E260K	PLCB1_uc010zrb.1_Missense_Mutation_p.E159K|PLCB1_uc002wna.2_Missense_Mutation_p.E260K|PLCB1_uc002wnc.1_Missense_Mutation_p.E159K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	260					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TCGGCTTAATGAAATACTTTA	0.383													7	47					0	0	0.001984	0	0
PLCB4	5332	broad.mit.edu	37	20	9353042	9353042	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:9353042C>T	uc002wnf.2	+	10	814	c.678C>T	c.(676-678)TTC>TTT	p.F226F	PLCB4_uc010gbw.1_Silent_p.F226F|PLCB4_uc010gbx.2_Silent_p.F226F|PLCB4_uc002wne.2_Silent_p.F226F|PLCB4_uc002wnh.2_Silent_p.F73F	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	226					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AAGATCTTTTCAAAAAAATGT	0.313													18	22					0	0	0.004990	0	0
PAK7	57144	broad.mit.edu	37	20	9546684	9546684	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:9546684C>T	uc002wnl.2	-	6	1883	c.1338G>A	c.(1336-1338)AGG>AGA	p.R446R	PAK7_uc002wnk.2_Silent_p.R446R|PAK7_uc002wnj.2_Silent_p.R446R|PAK7_uc010gby.1_Silent_p.R446R	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	446	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CCAAGTATTCCCTGGGGTCTC	0.587													24	21					0	0	0.003954	0	0
PAK7	57144	broad.mit.edu	37	20	9561072	9561072	+	Missense_Mutation	SNP	G	A	A	rs147760246		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:9561072G>A	uc002wnl.2	-	5	1255	c.710C>T	c.(709-711)TCT>TTT	p.S237F	PAK7_uc002wnk.2_Missense_Mutation_p.S237F|PAK7_uc002wnj.2_Missense_Mutation_p.S237F|PAK7_uc010gby.1_Missense_Mutation_p.S237F	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	237	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TGCAGTTCTAGAAGGTGTGAA	0.522													21	20					0	0	0.001882	0	0
JAG1	182	broad.mit.edu	37	20	10621490	10621490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:10621490G>A	uc002wnw.2	-	25	3656	c.3140C>T	c.(3139-3141)TCG>TTG	p.S1047L		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	1047	Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						AGCAATCAGCGAGCTGTTTCC	0.443									Alagille_Syndrome				5	34					0	0	0.000602	0	0
SPTLC3	55304	broad.mit.edu	37	20	13145493	13145493	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:13145493G>A	uc002wod.1	+	12	1927	c.1638G>A	c.(1636-1638)ACG>ACA	p.T546T		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	546					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	ATGATGAGACGAGCTTTGAAC	0.433													5	7					0	0	0.001168	0	0
KIF16B	55614	broad.mit.edu	37	20	16359499	16359499	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:16359499G>A	uc002wpg.1	-	19	3306	c.3148C>T	c.(3148-3150)CAG>TAG	p.Q1050*	KIF16B_uc002wpe.1_Nonsense_Mutation_p.Q432*|KIF16B_uc002wpf.1_Nonsense_Mutation_p.Q432*|KIF16B_uc010gch.1_Nonsense_Mutation_p.Q1050*|KIF16B_uc010gci.1_Nonsense_Mutation_p.Q1050*|KIF16B_uc010gcj.1_Nonsense_Mutation_p.Q1061*	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	1050	Glu-rich.|Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						AGGCTAGCCTGGAGCCCTGAC	0.582													48	32					0	0	0.003610	0	0
OVOL2	58495	broad.mit.edu	37	20	18005396	18005396	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:18005396G>C	uc002wqi.1	-	4	955	c.712C>G	c.(712-714)CCG>GCG	p.P238A		NM_021220	NP_067043	Q9BRP0	OVOL2_HUMAN	zinc finger protein 339	238					negative regulation of keratinocyte differentiation|negative regulation of Notch signaling pathway|negative regulation of transcription by competitive promoter binding|regulation of cell cycle|regulation of keratinocyte proliferation|transcription, DNA-dependent	nucleus	DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1						GAGCTGCCCGGATGGGCACTG	0.562													16	1					0	0	0.004007	0	0
SLC24A3	57419	broad.mit.edu	37	20	19666004	19666004	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:19666004C>T	uc002wrl.2	+	12	1520	c.1323C>T	c.(1321-1323)CCC>CCT	p.P441P		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	441	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						TCGACACCCCCTGTAAGAGGT	0.299													26	19					0	0	0.002836	0	0
CST5	1473	broad.mit.edu	37	20	23858212	23858212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:23858212C>T	uc002wtr.1	-	2	342	c.275G>A	c.(274-276)CGA>CAA	p.R92Q		NM_001900	NP_001891	P28325	CYTD_HUMAN	cystatin D precursor	92						extracellular region	cysteine-type endopeptidase inhibitor activity|protein binding				0						GCATGTGGTTCGACCGAACTT	0.532													7	50					0	0	0.003080	0	0
DEFB115	245929	broad.mit.edu	37	20	29847299	29847299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:29847299G>A	uc002wvp.1	+	2	131	c.131G>A	c.(130-132)AGA>AAA	p.R44K		NM_001037730	NP_001032819	Q30KQ5	DB115_HUMAN	beta-defensin 115 precursor	44					defense response to bacterium	extracellular region				ovary(1)	1			Colorectal(19;0.00445)|COAD - Colon adenocarcinoma(19;0.0347)			GGAACTGGCAGATGCAGGAAA	0.308													45	25					0	0	0.003610	0	0
MYLK2	85366	broad.mit.edu	37	20	30409334	30409334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:30409334G>A	uc002wwq.2	+	4	668	c.566G>A	c.(565-567)AGG>AAG	p.R189K		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	189					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ACGGATCCCAGGCCAGCCAAG	0.592													15	41					0	0	0.004007	0	0
TTLL9	164395	broad.mit.edu	37	20	30475014	30475014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:30475014G>A	uc010gdx.1	+	3	338	c.85G>A	c.(85-87)GGC>AGC	p.G29S	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Missense_Mutation_p.G38E|TTLL9_uc010ztp.1_Intron	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	29					protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			AAATTACAAGGGCCATGGATT	0.358													25	32					0	0	0.002096	0	0
TTLL9	164395	broad.mit.edu	37	20	30497607	30497607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:30497607G>A	uc010gdx.1	+	6	639	c.386G>A	c.(385-387)GGA>GAA	p.G129E	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Intron|TTLL9_uc010ztp.1_RNA|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	129	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CGTGAGGCAGGAAAGCTGGAG	0.552													10	30					0	0	0.000443	0	0
XKR7	343702	broad.mit.edu	37	20	30556335	30556335	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:30556335C>A	uc002wxe.2	+	1	531	c.357C>A	c.(355-357)CCC>CCA	p.P119P		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	119						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ACTCGGAGCCCGCAGGGTCCC	0.647													7	10					0.00198382	0.0034086	0.001984	1	0
C20orf160	140706	broad.mit.edu	37	20	30605875	30605875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:30605875G>A	uc002wxf.2	+	4	389	c.376G>A	c.(376-378)GAA>AAA	p.E126K		NM_080625	NP_542192	Q9NUG4	CT160_HUMAN	hypothetical protein LOC140706	126										central_nervous_system(3)|ovary(1)	4						GCGCGACAATGAAGAGCTCAT	0.642													11	24					0	0	0.000978	0	0
PLAGL2	5326	broad.mit.edu	37	20	30784537	30784537	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:30784537G>A	uc002wxn.2	-	3	1426	c.1209C>T	c.(1207-1209)CTC>CTT	p.L403L		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	403						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGGCCTCAGAGAGGTTGGCGG	0.642													8	20					0	0	0.003080	0	0
ASXL1	171023	broad.mit.edu	37	20	31016187	31016187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:31016187C>T	uc002wxs.2	+	5	859	c.433C>T	c.(433-435)CTT>TTT	p.L145F	ASXL1_uc002wxr.1_RNA|ASXL1_uc010geb.2_Missense_Mutation_p.L87F	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	145					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						GAGTCGACCTCTTTCCAATCC	0.478			F|N|Mis		MDS|CMML								112	61					0	0	0.003610	0	0
C20orf186	149954	broad.mit.edu	37	20	31671359	31671359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:31671359G>A	uc010zue.1	+	3	371	c.356G>A	c.(355-357)CGA>CAA	p.R119Q		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	119						cytoplasm|extracellular region	lipid binding				0						AGGGACCTCCGAAACAGTGGC	0.587													45	33					0	0	0.002522	0	0
NCOA6	23054	broad.mit.edu	37	20	33345246	33345246	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:33345246G>A	uc002xav.2	-	8	3876	c.1305C>T	c.(1303-1305)TTC>TTT	p.F435F	NCOA6_uc002xaw.2_Silent_p.F435F|NCOA6_uc010gew.1_Silent_p.F392F	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	435	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						ATCCCTGCTGGAAGGAGGAGG	0.582													49	30					0	0	0.003610	0	0
NCOA6	23054	broad.mit.edu	37	20	33345550	33345550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:33345550G>A	uc002xav.2	-	8	3572	c.1001C>T	c.(1000-1002)TCT>TTT	p.S334F	NCOA6_uc002xaw.2_Missense_Mutation_p.S334F|NCOA6_uc010gew.1_Missense_Mutation_p.S291F	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	334	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						TGTGCCCAGAGAACCCTGGGC	0.587													54	31					0	0	0.003610	0	0
MYH7B	57644	broad.mit.edu	37	20	33567514	33567514	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:33567514C>T	uc010gfa.1	+	4	370	c.249C>T	c.(247-249)TTC>TTT	p.F83F	MYH7B_uc002xbi.1_Silent_p.F125F			A7E2Y1	MYH7B_HUMAN	RecName: Full=Myosin-7B; AltName: Full=Myosin heavy chain 7B, cardiac muscle beta isoform; AltName: Full=Myosin cardiac muscle beta chain; AltName: Full=Antigen MLAA-21; AltName: Full=Slow A MYH14;	83						membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CGCCTCGCTTCGACTTACTGG	0.632													18	61					0	0	0.001523	0	0
MYH7B	57644	broad.mit.edu	37	20	33568446	33568446	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:33568446C>A	uc010gfa.1	+	5	529	c.408C>A	c.(406-408)TCC>TCA	p.S136S	MYH7B_uc002xbi.1_Silent_p.S178S			A7E2Y1	MYH7B_HUMAN	RecName: Full=Myosin-7B; AltName: Full=Myosin heavy chain 7B, cardiac muscle beta isoform; AltName: Full=Myosin cardiac muscle beta chain; AltName: Full=Antigen MLAA-21; AltName: Full=Slow A MYH14;	136	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			ATACGGCCTCCGTAGTGGCTG	0.527													6	158					0.00198382	0.0034086	0.001984	1	0
MYH7B	57644	broad.mit.edu	37	20	33586397	33586397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:33586397G>A	uc002xbi.1	+	32	4176	c.4084G>A	c.(4084-4086)GAA>AAA	p.E1362K		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1320	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CCAAAGCCTGGAAGAGTTGCG	0.637													18	46					0	0	0.001523	0	0
MYH7B	57644	broad.mit.edu	37	20	33586701	33586701	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:33586701G>A	uc002xbi.1	+	33	4391	c.4299G>A	c.(4297-4299)GAG>GAA	p.E1433E		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1391	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			AGAGGACCGAGGAGCTGGAGG	0.637													24	8					0	0	0.002299	0	0
FAM83C	128876	broad.mit.edu	37	20	33879710	33879710	+	Missense_Mutation	SNP	G	A	A	rs150022416		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:33879710G>A	uc010zux.1	-	1	516	c.398C>T	c.(397-399)CCC>CTC	p.P133L	FAM83C_uc002xcb.1_5'UTR	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	133										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			TGGCACCTCGGGCCAGCCCAG	0.627													44	134					0	0	0.003610	0	0
CPNE1	8904	broad.mit.edu	37	20	34218677	34218677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:34218677G>A	uc002xdf.2	-	14	1399	c.1036C>T	c.(1036-1038)CCC>TCC	p.P346S	CPNE1_uc002xdc.2_5'UTR|CPNE1_uc010zvj.1_Missense_Mutation_p.P351S|CPNE1_uc002xde.2_Missense_Mutation_p.P322S|CPNE1_uc002xdg.2_Missense_Mutation_p.P346S|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.P346S|CPNE1_uc002xdi.2_Missense_Mutation_p.P346S|CPNE1_uc002xdj.2_Missense_Mutation_p.P346S|CPNE1_uc002xdk.2_Missense_Mutation_p.P346S|CPNE1_uc002xdl.2_Missense_Mutation_p.P346S|CPNE1_uc002xdm.2_Missense_Mutation_p.P346S|CPNE1_uc010gfk.1_3'UTR	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	346	VWFA.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CAGTCAGGGGGAACCTGGGCC	0.527													31	96					0	0	0.002836	0	0
C20orf4	25980	broad.mit.edu	37	20	34832831	34832831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:34832831C>T	uc002xfc.1	+	3	1063	c.970C>T	c.(970-972)CTC>TTC	p.L324F	C20orf4_uc002xfd.1_Missense_Mutation_p.L324F|C20orf4_uc002xfe.1_Missense_Mutation_p.L324F	NM_015511	NP_056326	Q9Y312	CT004_HUMAN	hypothetical protein LOC25980	324											0	Breast(12;0.0162)	Myeloproliferative disorder(115;0.0393)				AGACAACTTCCTCACCAGCAC	0.493													19	47					0	0	0.001882	0	0
C20orf118	140711	broad.mit.edu	37	20	35506362	35506362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:35506362G>A	uc002xgg.1	+	2	102	c.94G>A	c.(94-96)GAG>AAG	p.E32K		NM_080628	NP_542195	A0PJX2	CT118_HUMAN	hypothetical protein LOC140711	32	Poly-Glu.										0		Myeloproliferative disorder(115;0.00874)				agaggaggaggaggCAGCTCC	0.498													25	48					0	0	0.003330	0	0
C20orf132	140699	broad.mit.edu	37	20	35738689	35738689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:35738689G>A	uc010zvu.1	-	24	3005	c.2914C>T	c.(2914-2916)CCC>TCC	p.P972S	C20orf132_uc002xgk.2_Missense_Mutation_p.P594S	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				CTTCTGATGGGAAGTTTTGGG	0.373													155	82					0	0	0.003610	0	0
C20orf132	140699	broad.mit.edu	37	20	35738759	35738759	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:35738759C>T	uc010zvu.1	-	24	2936	c.2845_splice	c.e24-1	p.E949_splice	C20orf132_uc002xgk.2_Splice_Site_p.E571_splice	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1												0		Myeloproliferative disorder(115;0.00878)				ACTTTTTTTCCTAAGTGTGGA	0.408													102	56					0	0	0.003610	0	0
TGM2	7052	broad.mit.edu	37	20	36766714	36766714	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:36766714C>T	uc002xhr.2	-	10	1516	c.1416G>A	c.(1414-1416)GGG>GGA	p.G472G	TGM2_uc010zvx.1_Silent_p.G391G|TGM2_uc010zvy.1_Silent_p.G412G|TGM2_uc002xhs.1_Silent_p.G448G|TGM2_uc002xht.2_Silent_p.G472G	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	472					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	GCATGGCCATCCCTGTCTCCT	0.577													65	33					0	0	0.003610	0	0
RALGAPB	57148	broad.mit.edu	37	20	37187061	37187061	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:37187061T>A	uc002xiw.2	+	23	3753	c.3496T>A	c.(3496-3498)TTC>ATC	p.F1166I	RALGAPB_uc002xix.2_Missense_Mutation_p.F1162I|RALGAPB_uc002xiy.1_Intron|RALGAPB_uc002xiz.2_Missense_Mutation_p.F944I	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	1166	Rap-GAP.				activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						AGTTTTTATTTTCTATATGAA	0.353													58	192					0	0	0.003610	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37534638	37534639	+	Silent	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:37534638_37534639CC>TT	uc002xje.2	+	7	912_913	c.723_724CC>TT	c.(721-726)TACCTG>TATTTG	p.241_242YL>YL	PPP1R16B_uc010ggc.2_Intron	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	241_242	ANK 3.				regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CCAATGGATACCTGCGGGCAGC	0.594													40	21					0	0	0.004672	0	0
TOP1	7150	broad.mit.edu	37	20	39721132	39721132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:39721132C>T	uc002xjl.2	+	9	881	c.635C>T	c.(634-636)CCT>CTT	p.P212L	TOP1_uc010gge.1_RNA	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	212					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	GAGCGCTATCCTGAAGGCATC	0.413			T	NUP98	AML*								60	23					0	0	0.003610	0	0
PLCG1	5335	broad.mit.edu	37	20	39793702	39793702	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:39793702C>T	uc002xjp.1	+	13	1468	c.1347C>T	c.(1345-1347)CTC>CTT	p.L449L	PLCG1_uc002xjo.1_Silent_p.L449L|PLCG1_uc010zwe.1_Silent_p.L75L|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	449	PI-PLC X-box.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				CCGACGGGCTCCCCTCACCCA	0.592													19	17					0	0	0.001523	0	0
CHD6	84181	broad.mit.edu	37	20	40080653	40080653	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:40080653C>T	uc002xka.1	-	22	3514	c.3336G>A	c.(3334-3336)TGG>TGA	p.W1112*		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1112					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GGATGTCCTTCCACCGGCCCC	0.547													5	23					0	0	0.000602	0	0
PTPRT	11122	broad.mit.edu	37	20	40827881	40827881	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:40827881G>A	uc002xkg.2	-	16	2674	c.2490C>T	c.(2488-2490)TTC>TTT	p.F830F	PTPRT_uc010ggj.2_Silent_p.F849F|PTPRT_uc010ggi.2_Silent_p.F33F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	830	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TCTACTTACTGAATCCGTTGA	0.562													122	353					0	0	0.003610	0	0
SGK2	10110	broad.mit.edu	37	20	42198101	42198101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:42198101C>T	uc002xkv.2	+	5	704	c.485C>T	c.(484-486)TCC>TTC	p.S162F	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Missense_Mutation_p.S102F|SGK2_uc010ggm.2_Missense_Mutation_p.S102F|SGK2_uc002xks.2_Missense_Mutation_p.S101F|SGK2_uc002xku.2_Missense_Mutation_p.S102F|SGK2_uc002xkq.1_Missense_Mutation_p.S102F	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	162	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CTGCGCTACTCCTTCCAGACA	0.617													40	25					0	0	0.005524	0	0
TOX2	84969	broad.mit.edu	37	20	42635366	42635366	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:42635366C>T	uc002xlf.3	+	3	389	c.372C>T	c.(370-372)CTC>CTT	p.L124L	TOX2_uc010ggo.2_Silent_p.L115L|TOX2_uc002xle.3_Silent_p.L73L|TOX2_uc010ggp.2_Silent_p.L73L|TOX2_uc002xlg.2_Silent_p.L73L	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	124					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CCATGGACCTCCCAGCCATCA	0.637													20	12					0	0	0.001216	0	0
JPH2	57158	broad.mit.edu	37	20	42789047	42789047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:42789047C>T	uc002xli.1	-	2	1253	c.380G>A	c.(379-381)GGG>GAG	p.G127E		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	127	MORN 5.|Gly-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			TTGGTACGTCCCTGCGGGCGA	0.721													5	16					0	0	0.001984	0	0
HNF4A	3172	broad.mit.edu	37	20	43034831	43034831	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:43034831C>T	uc002xma.2	+	2	338	c.249C>T	c.(247-249)TTC>TTT	p.F83F	HNF4A_uc010zwo.1_Missense_Mutation_p.S74F|HNF4A_uc002xlt.2_Silent_p.F61F|HNF4A_uc002xlu.2_Silent_p.F61F|HNF4A_uc002xlv.2_Silent_p.F61F|HNF4A_uc002xly.2_Silent_p.F83F|HNF4A_uc002xlz.2_Silent_p.F83F|HNF4A_uc010ggq.2_Silent_p.F76F	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	83	Nuclear receptor.				blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GCAAGGGCTTCTTCCGGAGGA	0.552													185	92					0	0	0.003610	0	0
SERINC3	10955	broad.mit.edu	37	20	43142583	43142583	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:43142583G>A	uc002xme.2	-	2	272	c.138C>T	c.(136-138)CTC>CTT	p.L46L	SERINC3_uc002xmf.1_Silent_p.L46L|SERINC3_uc010ggs.1_Silent_p.L39L|SERINC3_uc010zwp.1_5'UTR	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	46	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			TGCTCAGGAGGAGAATGAAAG	0.438													25	100					0	0	0.001786	0	0
SEMG2	6407	broad.mit.edu	37	20	43851300	43851300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:43851300G>A	uc010ggz.2	+	2	1084	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	SEMG2_uc002xnk.2_Missense_Mutation_p.E343K|SEMG2_uc002xnl.2_Missense_Mutation_p.E343K	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	343	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				TGGCCATAAGGAAAATAAAAT	0.378													50	26					0	0	0.003610	0	0
WFDC2	10406	broad.mit.edu	37	20	44098461	44098461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:44098461C>T	uc002xoo.2	+	1	68	c.40C>T	c.(40-42)CTC>TTC	p.L14F	WFDC2_uc002xoq.2_RNA|WFDC2_uc002xop.2_Missense_Mutation_p.L14F	NM_006103	NP_006094	Q14508	WFDC2_HUMAN	WAP four-disulfide core domain 2 precursor	14					proteolysis|spermatogenesis	extracellular space	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CGCCGCCCTCCTCCTCAGCCT	0.692													14	6					0	0	0.003163	0	0
WFDC9	259240	broad.mit.edu	37	20	44237334	44237334	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:44237334C>T	uc002xoy.2	-	4	425	c.207G>A	c.(205-207)TGG>TGA	p.W69*		NM_147198	NP_671731	Q8NEX5	WFDC9_HUMAN	protease inhibitor WAP9 precursor	69						extracellular region					0		Myeloproliferative disorder(115;0.0122)				CACAGTAGGTCCAGCAGCATG	0.473													30	131					0	0	0.003271	0	0
WFDC11	259239	broad.mit.edu	37	20	44279216	44279216	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:44279216C>T	uc002xpa.2	-	3	219	c.24G>A	c.(22-24)TGG>TGA	p.W8*		NM_147197	NP_671730	Q8NEX6	WFD11_HUMAN	WAP four-disulfide core domain 11 precursor	8						extracellular region					0		Myeloproliferative disorder(115;0.0122)				GCATGGGTATCCAGAGCTTCA	0.443													70	31					0	0	0.003610	0	0
WFDC13	164237	broad.mit.edu	37	20	44334534	44334534	+	Missense_Mutation	SNP	C	T	T	rs143587653		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:44334534C>T	uc002xpd.2	+	3	380	c.272C>T	c.(271-273)CCT>CTT	p.P91L	WFDC10B_uc002xpb.2_5'Flank|WFDC10B_uc002xpc.2_5'Flank	NM_172005	NP_742002	Q8IUB5	WFD13_HUMAN	WAP four-disulfide core domain 13 precursor	91						extracellular region	peptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GTCATCATGCCTGCCAACTGA	0.363													42	31					0	0	0.003610	0	0
SLC12A5	57468	broad.mit.edu	37	20	44685936	44685936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:44685936G>A	uc010zxl.1	+	25	3398	c.3322G>A	c.(3322-3324)GAA>AAA	p.E1108K	SLC12A5_uc002xrb.2_Missense_Mutation_p.E1085K	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	1108	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CAATGGTGATGAAAACTGTAT	0.562													29	110					0	0	0.003271	0	0
ZNF334	55713	broad.mit.edu	37	20	45130693	45130693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:45130693C>T	uc002xsc.2	-	5	1469	c.1285G>A	c.(1285-1287)GGA>AGA	p.G429R	ZNF334_uc002xsa.2_Missense_Mutation_p.G452R|ZNF334_uc002xsb.2_Missense_Mutation_p.G391R|ZNF334_uc002xsd.2_Missense_Mutation_p.G391R|ZNF334_uc010ghl.2_Missense_Mutation_p.G428R	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	429					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				GGCTTCTCTCCTGTATGACTT	0.393													82	51					0	0	0.003610	0	0
NCOA3	8202	broad.mit.edu	37	20	46281231	46281232	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:46281231_46281232CC>TT	uc002xtk.2	+	21	4233_4234	c.4028_4029CC>TT	c.(4027-4029)TCC>TTT	p.S1343F	NCOA3_uc002xtl.2_Missense_Mutation_p.S1339F|NCOA3_uc002xtm.2_Missense_Mutation_p.S1338F|NCOA3_uc002xtn.2_Missense_Mutation_p.S1342F|NCOA3_uc010zyc.1_Missense_Mutation_p.S1138F	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1343					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						ATGGGTCCCTCCCAGAATCCCA	0.48													13	47					0	0	0.004672	0	0
SULF2	55959	broad.mit.edu	37	20	46318973	46318973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:46318973G>A	uc002xto.2	-	5	964	c.634C>T	c.(634-636)CCG>TCG	p.P212S	SULF2_uc002xtr.2_Missense_Mutation_p.P212S|SULF2_uc002xtq.2_Missense_Mutation_p.P212S|SULF2_uc010ghv.1_Missense_Mutation_p.P212S	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	212					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GGCCTGTGCGGGTACATCTTC	0.577													10	56					0	0	0.000443	0	0
PREX1	57580	broad.mit.edu	37	20	47273669	47273669	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:47273669G>A	uc002xtw.1	-	18	2055	c.2032C>T	c.(2032-2034)CTG>TTG	p.L678L	PREX1_uc002xtv.1_5'Flank	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	678	PDZ.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			AACGGCCGCAGGAACACCAGG	0.607											OREG0026010	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	8					0	0	0.001855	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47633841	47633841	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:47633841C>T	uc002xtx.3	+	32	4523	c.4371C>T	c.(4369-4371)TCC>TCT	p.S1457S	ARFGEF2_uc010zyf.1_Silent_p.S750S	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1457					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			TAGTAATATCCAATGGAGAGA	0.358													24	87					0	0	0.003954	0	0
KCNB1	3745	broad.mit.edu	37	20	48098645	48098645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:48098645C>T	uc002xur.1	-	1	537	c.373G>A	c.(373-375)GAC>AAC	p.D125N	KCNB1_uc002xus.1_Missense_Mutation_p.D125N	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	125	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TAGATCTCGTCGATGCCCCAG	0.597													16	52					0	0	0.000743	0	0
PTGIS	5740	broad.mit.edu	37	20	48130849	48130849	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:48130849G>A	uc002xut.2	-	7	993	c.939C>T	c.(937-939)CTC>CTT	p.L313L	PTGIS_uc010zyi.1_Silent_p.L174L	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	313					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	GGATACTCTCGAGCTCTCCGC	0.587													12	40					0	0	0.001368	0	0
PTGIS	5740	broad.mit.edu	37	20	48130856	48130856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:48130856C>T	uc002xut.2	-	7	986	c.932G>A	c.(931-933)GGA>GAA	p.G311E	PTGIS_uc010zyi.1_Missense_Mutation_p.G172E	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	311					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	CTCGAGCTCTCCGCGGACAGC	0.582													41	13					0	0	0.002522	0	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48746165	48746165	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:48746165G>A	uc002xvf.2	-	4	557	c.396C>T	c.(394-396)TTC>TTT	p.F132F	TMEM189_uc010zyq.1_RNA|TMEM189_uc002xvg.2_Silent_p.F132F|TMEM189_uc010gif.2_Silent_p.F129F|TMEM189_uc010zyp.1_Silent_p.F57F	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	Error:Variant_position_missing_in_Q13404_after_alignment					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			TGGTCTCGATGAAGTCGTGCC	0.597													16	48					0	0	0.001216	0	0
SALL4	57167	broad.mit.edu	37	20	50408154	50408154	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:50408154T>C	uc002xwh.3	-	2	969	c.868A>G	c.(868-870)AAA>GAA	p.K290E	SALL4_uc010gii.2_Missense_Mutation_p.K290E|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	290					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TTGGCTTGTTTCAAGGCATCC	0.587													13	50					0	0	0.002450	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871842	51871842	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:51871842G>A	uc002xwo.2	+	2	2801	c.1845G>A	c.(1843-1845)GGG>GGA	p.G615G		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	615					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AGGAGTGTGGGAAAGAAAGTC	0.507													73	39					0	0	0.003610	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871984	51871984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:51871984G>A	uc002xwo.2	+	2	2943	c.1987G>A	c.(1987-1989)GAG>AAG	p.E663K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	663					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AGAGGGCAGCGAGAAGGAGAA	0.597													9	45					0	0	0.000443	0	0
DOK5	55816	broad.mit.edu	37	20	53205089	53205089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:53205089G>A	uc002xwy.2	+	3	462	c.242G>A	c.(241-243)GGG>GAG	p.G81E	DOK5_uc010gin.2_5'UTR|DOK5_uc002xwz.2_5'UTR	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	81	PH.						insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			CATGCCATAGGGATTTATTTC	0.418													76	54					0	0	0.003610	0	0
CASS4	57091	broad.mit.edu	37	20	55027236	55027236	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:55027236T>A	uc002xxp.2	+	6	1229	c.1004T>A	c.(1003-1005)TTT>TAT	p.F335Y	CASS4_uc002xxq.3_Missense_Mutation_p.F335Y|CASS4_uc002xxr.2_Missense_Mutation_p.F335Y|CASS4_uc010zze.1_Missense_Mutation_p.F281Y|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	335					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CCTTCAAGCTTTCTGATTCCC	0.453													30	68					0	0	0.002096	0	0
ZNF831	128611	broad.mit.edu	37	20	57766909	57766909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:57766909C>T	uc002yan.2	+	1	835	c.835C>T	c.(835-837)CCT>TCT	p.P279S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	279						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CAGAGAGGCTCCTTGGGACTC	0.652													60	40					0	0	0.003610	0	0
C20orf177	63939	broad.mit.edu	37	20	58519433	58519433	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:58519433C>T	uc002yba.2	+	5	850	c.435C>T	c.(433-435)TTC>TTT	p.F145F	C20orf177_uc010zzx.1_Intron|C20orf177_uc002ybc.2_Silent_p.F145F	NM_022106	NP_071389	Q9NTX9	CT177_HUMAN	hypothetical protein LOC63939	145										ovary(2)|breast(1)	3	all_lung(29;0.00693)		BRCA - Breast invasive adenocarcinoma(7;1.22e-08)			ATCCTAATTTCCTTCCATCCC	0.483													20	50					0	0	0.001216	0	0
CDH26	60437	broad.mit.edu	37	20	58569433	58569433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:58569433C>T	uc002ybe.2	+	11	1855	c.1555C>T	c.(1555-1557)CAC>TAC	p.H519Y	CDH26_uc002ybf.1_Missense_Mutation_p.H99Y|CDH26_uc010zzy.1_RNA|CDH26_uc002ybg.2_Missense_Mutation_p.H33Y|CDH26_uc002ybh.2_5'Flank|CDH26_uc002ybi.2_5'Flank	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	519	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			TGAGCCCCTCCACATCGAGGC	0.547													9	62					0	0	0.004482	0	0
CDH4	1002	broad.mit.edu	37	20	60419799	60419799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:60419799G>A	uc002ybn.1	+	5	666	c.652G>A	c.(652-654)GAG>AAG	p.E218K	CDH4_uc002ybp.1_Missense_Mutation_p.E144K	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	218	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GCCCCCCATGGAGGTCTTCAG	0.607													16	56					0	0	0.000958	0	0
LAMA5	3911	broad.mit.edu	37	20	60888162	60888162	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:60888162G>A	uc002ycq.2	-	65	9004	c.8937C>T	c.(8935-8937)CTC>CTT	p.L2979L		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2979	Laminin G-like 2.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCAGGAAGAAGAGCACCCCGC	0.637													8	16					0	0	0.004482	0	0
LAMA5	3911	broad.mit.edu	37	20	60890244	60890244	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:60890244G>A	uc002ycq.2	-	59	7954	c.7887C>T	c.(7885-7887)ATC>ATT	p.I2629I		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2629	Potential.|Domain II and I.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGCATGTGCGATCTTCTTGC	0.642													10	28					0	0	0.002450	0	0
COL9A3	1299	broad.mit.edu	37	20	61463533	61463533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:61463533G>A	uc002ydm.2	+	25	1318	c.1315G>A	c.(1315-1317)GGA>AGA	p.G439R		NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	439	Triple-helical region 3 (COL3).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					AGGCCCTAAGGGAGACCAGGT	0.627													11	7					0	0	0.003163	0	0
DIDO1	11083	broad.mit.edu	37	20	61542308	61542308	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:61542308G>A	uc002ydr.1	-	3	921	c.657C>T	c.(655-657)CCC>CCT	p.P219P	DIDO1_uc002yds.1_Silent_p.P219P|DIDO1_uc002ydt.1_Silent_p.P219P|DIDO1_uc002ydu.1_Silent_p.P219P|DIDO1_uc002ydv.1_Silent_p.P219P|DIDO1_uc002ydw.1_Silent_p.P219P|DIDO1_uc002ydx.1_Silent_p.P219P|DIDO1_uc011aao.1_Silent_p.P219P	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	219					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GATCGTTCTCGGGCTCCTGCT	0.627													20	56					0	0	0.000958	0	0
YTHDF1	54915	broad.mit.edu	37	20	61833777	61833777	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:61833777G>A	uc002yeh.2	-	4	1809	c.1515C>T	c.(1513-1515)TCC>TCT	p.S505S	YTHDF1_uc011aaq.1_Silent_p.S455S	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	505	YTH.									ovary(2)	2						GGGTGTCCCGGGAGTTTGTGA	0.478													12	48					0	0	0.003163	0	0
COL20A1	57642	broad.mit.edu	37	20	61950913	61950913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:61950913G>A	uc011aau.1	+	23	2981	c.2881G>A	c.(2881-2883)GAA>AAA	p.E961K	COL20A1_uc011aav.1_Missense_Mutation_p.E782K	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	961	TSP N-terminal.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CGACCCGCAGGAAGTGAGGAA	0.662													7	3					0	0	0.000443	0	0
C20orf195	79025	broad.mit.edu	37	20	62187726	62187726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62187726C>T	uc002yfj.2	+	2	802	c.710C>T	c.(709-711)TCG>TTG	p.S237L	C20orf195_uc002yfk.2_Missense_Mutation_p.S237L	NM_024059	NP_076964	Q9BVV2	CT195_HUMAN	hypothetical protein LOC79025	237											0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			CCAGCCACATCGGAGCAGTAT	0.652													51	123					0	0	0.003610	0	0
C20orf195	79025	broad.mit.edu	37	20	62187896	62187896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62187896G>A	uc002yfj.2	+	2	972	c.880G>A	c.(880-882)GAG>AAG	p.E294K	C20orf195_uc002yfk.2_Missense_Mutation_p.E294K	NM_024059	NP_076964	Q9BVV2	CT195_HUMAN	hypothetical protein LOC79025	294											0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			GCTGGTGTACGAGCCCTGGAG	0.597													56	117					0	0	0.003610	0	0
PRIC285	85441	broad.mit.edu	37	20	62196571	62196571	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62196571G>A	uc002yfm.2	-	9	4496	c.3604C>T	c.(3604-3606)CTG>TTG	p.L1202L	PRIC285_uc002yfl.1_Silent_p.L633L	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1202					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			ACAAACGCCAGCTCGTGCCTC	0.657													12	7					0	0	0.001855	0	0
PRIC285	85441	broad.mit.edu	37	20	62199768	62199768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62199768G>A	uc002yfm.2	-	6	2565	c.1673C>T	c.(1672-1674)TCC>TTC	p.S558F	PRIC285_uc002yfl.1_5'Flank	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	558					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GACCTCCAGGGAGGCCATGGC	0.667													16	10					0	0	0.004990	0	0
GMEB2	26205	broad.mit.edu	37	20	62223911	62223911	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62223911G>A	uc002yfp.1	-	7	1283	c.804C>T	c.(802-804)GTC>GTT	p.V268V	GMEB2_uc002yfo.1_Silent_p.V190V|GMEB2_uc002yfq.1_Silent_p.V268V	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	268					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			GAGGGTCCTGGACCCGCTGCT	0.652													24	11					0	0	0.002780	0	0
STMN3	50861	broad.mit.edu	37	20	62275187	62275187	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62275187G>A	uc002yfr.1	-	3	295	c.213C>T	c.(211-213)CTC>CTT	p.L71L	STMN3_uc011abb.1_Silent_p.L71L	NM_015894	NP_056978	Q9NZ72	STMN3_HUMAN	SCG10-like-protein	71					cytoplasmic microtubule organization|intracellular signal transduction|negative regulation of Rac protein signal transduction|neuron projection development|regulation of cytoskeleton organization|regulation of Rac GTPase activity	cytoplasm	protein domain specific binding				0	all_cancers(38;2.31e-11)|all_epithelial(29;7.76e-13)		Epithelial(9;1.9e-09)|all cancers(9;1.22e-08)|BRCA - Breast invasive adenocarcinoma(10;8.86e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.00559)			GTGGGGAGGAGAGCATAGGGC	0.622													71	34					0	0	0.003610	0	0
PRPF6	24148	broad.mit.edu	37	20	62614414	62614414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62614414C>T	uc002yho.2	+	2	254	c.86C>T	c.(85-87)ACC>ATC	p.T29I	PRPF6_uc002yhp.2_Missense_Mutation_p.T29I	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	29					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					ACTGGCTTCACCACGCGGTCA	0.562													8	27					0	0	0.003080	0	0
MYT1	4661	broad.mit.edu	37	20	62839344	62839344	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62839344G>A	uc002yii.2	+	7	1159	c.795G>A	c.(793-795)GAG>GAA	p.E265E	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	265	Glu-rich.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					aggaggaggaggaggaggaag	0.234													15	9					0	0	0.003163	0	0
MYT1	4661	broad.mit.edu	37	20	62843415	62843415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:62843415G>A	uc002yii.2	+	9	1805	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K	MYT1_uc002yih.2_Missense_Mutation_p.E183K|MYT1_uc002yij.2_Missense_Mutation_p.E113K	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	481					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AGCCATGCATGAGAACGTGCT	0.577													98	59					0	0	0.003610	0	0
SAMSN1	64092	broad.mit.edu	37	21	15884877	15884877	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:15884877C>T	uc002yju.1	-	4	379	c.297G>A	c.(295-297)GAG>GAA	p.E99E	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Silent_p.E167E	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	99					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		GGTGGGCATTCTCTCCATCTT	0.443													43	69					0	0	0.003610	0	0
NRIP1	8204	broad.mit.edu	37	21	16340338	16340338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:16340338G>A	uc002yjx.2	-	4	774	c.176C>T	c.(175-177)CCC>CTC	p.P59L		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	59					androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		TTGACAGGTGGGAAATGCACT	0.473													17	19					0	0	0.004990	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19775806	19775806	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:19775806T>C	uc002ykw.2	-	1	165	c.134A>G	c.(133-135)GAA>GGA	p.E45G		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	45	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TCGTTGGGATTCCTTGATTGT	0.423													33	68					0	0	0.005524	0	0
ATP5J	522	broad.mit.edu	37	21	27097615	27097615	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:27097615G>A	uc002yls.2	-	3	884	c.211C>T	c.(211-213)CTG>TTG	p.L71L	ATP5J_uc002ylt.2_Silent_p.L71L|ATP5J_uc002ylu.2_Silent_p.L71L|ATP5J_uc002ylv.2_Silent_p.L79L|ATP5J_uc002ylw.2_Silent_p.L71L	NM_001685	NP_001676	P18859	ATP5J_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	71					ATP catabolic process|respiratory electron transport chain		hydrogen ion transmembrane transporter activity				0						TCCCTCTCCAGCTCTTGCTGA	0.368													18	18					0	0	0.000743	0	0
APP	351	broad.mit.edu	37	21	27354660	27354660	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:27354660G>A	uc002ylz.2	-	9	1421	c.1221C>T	c.(1219-1221)TCC>TCT	p.S407S	APP_uc010glk.2_Silent_p.S383S|APP_uc002yma.2_Silent_p.S388S|APP_uc011ach.1_Silent_p.S351S|APP_uc002ymb.2_Silent_p.S332S|APP_uc010glj.2_Silent_p.S276S|APP_uc011aci.1_Silent_p.S297S	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	407	Extracellular (Potential).|Heparin-binding.				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				GACTTACCTGGGACATTCTCT	0.522													33	48					0	0	0.003755	0	0
RNF160	26046	broad.mit.edu	37	21	30338887	30338887	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:30338887G>A	uc002ymr.2	-	10	2077	c.2064C>T	c.(2062-2064)GTC>GTT	p.V688V	RNF160_uc010gll.1_RNA	NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	642							ligase activity|zinc ion binding				0						GTTTGGCTTGGACAATACTCT	0.383													19	37					0	0	0.000743	0	0
C21orf7	56911	broad.mit.edu	37	21	30532351	30532351	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:30532351G>A	uc002yne.2	+	7	793	c.522G>A	c.(520-522)AAG>AAA	p.K174K	C21orf7_uc011acr.1_RNA|C21orf7_uc002ynd.2_RNA|C21orf7_uc010gln.2_RNA|C21orf7_uc002ynf.2_Silent_p.K174K|C21orf7_uc010glo.2_Silent_p.K19K|C21orf7_uc002yng.2_Silent_p.K74K|C21orf7_uc010glp.2_RNA	NM_020152	NP_064537	P57077	TAK1L_HUMAN	chromosome 21 open reading frame 7	174						cytosol|nucleus	protein binding	p.K174N(1)		ovary(2)	2				Colorectal(56;0.248)		AGGTCAAAAAGGAAATCACCC	0.522													26	53					0	0	0.001061	0	0
KRTAP15-1	254950	broad.mit.edu	37	21	31813028	31813028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:31813028C>T	uc002yod.2	+	1	383	c.383C>T	c.(382-384)TCA>TTA	p.S128L		NM_181623	NP_853654	Q3LI76	KR151_HUMAN	keratin associated protein 15-1	128						intermediate filament					0						ACTACCTTTTCATCCAGGAAT	0.458													37	81					0	0	0.001951	0	0
KRTAP19-1	337882	broad.mit.edu	37	21	31852429	31852429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:31852429C>T	uc011acx.1	-	1	208	c.208G>A	c.(208-210)GGC>AGC	p.G70S		NM_181607	NP_853638	Q8IUB9	KR191_HUMAN	keratin associated protein 19-1	70	26 X 2 AA repeats of G-[YCGS].					intermediate filament					0						TATCCATAGCCTCCAAAGCCA	0.498													71	125					0	0	0.003610	0	0
TIAM1	7074	broad.mit.edu	37	21	32595738	32595738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:32595738G>A	uc002yow.1	-	9	2451	c.1979C>T	c.(1978-1980)TCA>TTA	p.S660L	TIAM1_uc011adk.1_Missense_Mutation_p.S660L|TIAM1_uc011adl.1_Missense_Mutation_p.S660L|TIAM1_uc002yox.1_Missense_Mutation_p.S268L	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	660					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ATGAAACGATGATACCGAAAA	0.478													34	48					0	0	0.003271	0	0
IFNGR2	3460	broad.mit.edu	37	21	34793917	34793917	+	Missense_Mutation	SNP	C	G	G	rs121913200		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:34793917C>G	uc002yrp.3	+	3	985	c.337C>G	c.(337-339)CTA>GTA	p.L113V	IFNGR2_uc002yrq.3_Missense_Mutation_p.L132V|IFNGR2_uc010gma.2_Missense_Mutation_p.L34V|IFNGR2_uc002yrr.3_Missense_Mutation_p.L34V	NM_005534	NP_005525	P38484	INGR2_HUMAN	interferon gamma receptor 2 precursor	113	Extracellular (Potential).|Fibronectin type-III 1.				regulation of interferon-gamma-mediated signaling pathway|response to virus	endoplasmic reticulum|integral to plasma membrane	interferon-gamma receptor activity				0					Interferon gamma-1b(DB00033)	CAATGTCACTCTACGCCTTCG	0.493													29	51					0	0	0.001512	0	0
SON	6651	broad.mit.edu	37	21	34927194	34927194	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:34927194T>C	uc002yse.1	+	3	5706	c.5657T>C	c.(5656-5658)GTA>GCA	p.V1886A	SON_uc002ysb.1_Missense_Mutation_p.V1886A|SON_uc002ysc.2_Missense_Mutation_p.V1886A|SON_uc002ysd.2_Missense_Mutation_p.V877A|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.V877A	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	1886					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						AGAAGATCTGTATCAAAAGAG	0.443													9	18					0	0	0.000673	0	0
CLIC6	54102	broad.mit.edu	37	21	36081767	36081767	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:36081767G>A	uc010gmt.1	+	6	1884	c.1884G>A	c.(1882-1884)AGG>AGA	p.R628R	CLIC6_uc002yuf.1_Silent_p.R610R	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	628	GST C-terminal.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						TTTCTGGAAGGAAGTTTCTGG	0.507													24	20					0	0	0.002299	0	0
HLCS	3141	broad.mit.edu	37	21	38302591	38302591	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:38302591A>G	uc010gnb.2	-	5	2340	c.1139T>C	c.(1138-1140)GTT>GCT	p.V380A	HLCS_uc002yvs.2_Missense_Mutation_p.V380A|HLCS_uc010gnc.1_Missense_Mutation_p.V527A	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	380					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	TAAGGCAGGAACTTGTTTCAT	0.502													15	30					0	0	0.002450	0	0
DSCR6	53820	broad.mit.edu	37	21	38390414	38390414	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:38390414G>A	uc002yvv.2	+	4	690	c.480G>A	c.(478-480)GGG>GGA	p.G160G	DSCR6_uc011aec.1_Missense_Mutation_p.G47D|DSCR6_uc010gnd.2_Missense_Mutation_p.G47D	NM_018962	NP_061835	P57055	DSCR6_HUMAN	Down syndrome critical region protein 6	160						nucleus				breast(1)	1		Myeloproliferative disorder(46;0.0632)				TCAACCAAGGGCAGCGATCCT	0.627													9	23					0	0	0.000673	0	0
ERG	2078	broad.mit.edu	37	21	39772548	39772548	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:39772548G>A	uc010gnw.2	-	8	1009	c.714C>T	c.(712-714)TTC>TTT	p.F238F	ERG_uc002yxa.2_Silent_p.F231F|ERG_uc011aek.1_Silent_p.F139F|ERG_uc010gnv.2_Intron|ERG_uc010gnx.2_Intron|ERG_uc011ael.1_Silent_p.F238F|ERG_uc002yxb.2_Intron|ERG_uc011aem.1_Intron|ERG_uc002yxc.3_Silent_p.F238F|ERG_uc010gny.1_Intron	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	238					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				AAGTATTTGGGAAAATAAAAG	0.423													22	43					0	0	0.001882	0	0
ETS2	2114	broad.mit.edu	37	21	40184979	40184979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:40184979C>T	uc002yxg.2	+	3	321	c.125C>T	c.(124-126)TCT>TTT	p.S42F	ETS2_uc002yxf.2_Missense_Mutation_p.S182F	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	42					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				GTTTTTCCTTCTCTAAATGAA	0.398													54	88					0	0	0.003610	0	0
LCA5L	150082	broad.mit.edu	37	21	40778104	40778104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:40778104C>T	uc002yxu.2	-	10	2030	c.1717G>A	c.(1717-1719)GGG>AGG	p.G573R	LCA5L_uc002yxv.2_Missense_Mutation_p.G573R	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	573											0		Prostate(19;1.2e-06)				GGCTCATACCCACTGTCAGAA	0.458													34	54					0	0	0.005524	0	0
IGSF5	150084	broad.mit.edu	37	21	41143056	41143056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:41143056G>A	uc002yyo.2	+	4	735	c.632G>A	c.(631-633)GGG>GAG	p.G211E		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	211	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				CAGAGCAATGGGACTTTGACT	0.527													16	42					0	0	0.004990	0	0
DSCAM	1826	broad.mit.edu	37	21	41452109	41452109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:41452109C>T	uc002yyq.1	-	25	4842	c.4390G>A	c.(4390-4392)GAA>AAA	p.E1464K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1464	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCTATGATTTCACTTATGCGC	0.458													44	51					0	0	0.003610	0	0
DSCAM	1826	broad.mit.edu	37	21	41539166	41539166	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:41539166C>T	uc002yyq.1	-	16	3449	c.2997G>A	c.(2995-2997)CAG>CAA	p.Q999Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	999	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCCTGATGCTCTGAGATGATA	0.517													19	27					0	0	0.001882	0	0
DSCAM	1826	broad.mit.edu	37	21	41559082	41559082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:41559082C>T	uc002yyq.1	-	14	3207	c.2755G>A	c.(2755-2757)GAT>AAT	p.D919N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	919	Extracellular (Potential).|Fibronectin type-III 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CATTCAATATCGTAGCCTGTG	0.413													10	26					0	0	0.000978	0	0
DSCAM	1826	broad.mit.edu	37	21	41648155	41648155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:41648155C>T	uc002yyq.1	-	11	2677	c.2225G>A	c.(2224-2226)CGA>CAA	p.R742Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	742	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AACTTGGATTCGGCCATTTAG	0.512													12	27					0	0	0.000978	0	0
DSCAM	1826	broad.mit.edu	37	21	41719772	41719772	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:41719772G>A	uc002yyq.1	-	6	1487	c.1035C>T	c.(1033-1035)CTC>CTT	p.L345L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	345	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGTACCAGGAGAGTTCCTGGT	0.493													44	60					0	0	0.002522	0	0
DSCAM	1826	broad.mit.edu	37	21	41725446	41725446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:41725446C>T	uc002yyq.1	-	5	1332	c.880G>A	c.(880-882)GAA>AAA	p.E294K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	294	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTGGACACTTCACAAACATAG	0.527													36	65					0	0	0.004878	0	0
PRDM15	63977	broad.mit.edu	37	21	43291606	43291606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:43291606G>A	uc002yzq.1	-	4	649	c.538C>T	c.(538-540)CCT>TCT	p.P180S	PRDM15_uc002yzo.2_Intron|PRDM15_uc002yzp.2_Intron|PRDM15_uc002yzr.1_Intron	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	180					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCCCACCAGGAGGTAGGGCA	0.582													25	30					0	0	0.001061	0	0
UBASH3A	53347	broad.mit.edu	37	21	43838527	43838527	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:43838527C>T	uc002zbe.2	+	7	891	c.855C>T	c.(853-855)TTC>TTT	p.F285F	UBASH3A_uc002zbf.2_Silent_p.F247F|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Silent_p.F247F	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	285	SH3.					cytosol|nucleus				ovary(3)	3						GAGCCCTATTCCAGTACAAAC	0.532													43	57					0	0	0.003610	0	0
CRYAA	1409	broad.mit.edu	37	21	44592345	44592345	+	Silent	SNP	C	T	T	rs150629848	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:44592345C>T	uc002zdd.1	+	3	546	c.477C>T	c.(475-477)ATC>ATT	p.I159I		NM_000394	NP_000385	P02489	CRYAA_HUMAN	crystallin, alpha A	159					anti-apoptosis|negative regulation of intracellular transport|protein homooligomerization|response to heat|visual perception	cytoplasm|nucleus	structural constituent of eye lens|unfolded protein binding			breast(1)|central_nervous_system(1)	2						AGCGAGCCATCCCCGTGTCGC	0.672													6	23					0	0	0.000978	0	0
HSF2BP	11077	broad.mit.edu	37	21	44949831	44949831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:44949831C>T	uc002zdi.2	-	9	1140	c.808G>A	c.(808-810)GAG>AAG	p.E270K	HSF2BP_uc011aey.1_Missense_Mutation_p.E195K	NM_007031	NP_008962	O75031	HSF2B_HUMAN	heat shock transcription factor 2 binding	270					spermatogenesis|transcription from RNA polymerase II promoter	cytosol	binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.18)		AGGCACACCTCTGCATCTGGA	0.378													22	21					0	0	0.002780	0	0
DNMT3L	29947	broad.mit.edu	37	21	45671535	45671535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:45671535G>A	uc002zeg.1	-	9	1224	c.740C>T	c.(739-741)CCC>CTC	p.P247L	DNMT3L_uc002zeh.1_Missense_Mutation_p.P247L	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	247					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		GTGGCCCAGGGGAGGTGTGGC	0.642													18	43					0	0	0.002780	0	0
TRPM2	7226	broad.mit.edu	37	21	45819208	45819208	+	Missense_Mutation	SNP	G	A	A	rs150593294		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:45819208G>A	uc002zet.1	+	15	2305	c.2092G>A	c.(2092-2094)GAA>AAA	p.E698K	TRPM2_uc002zeu.1_Missense_Mutation_p.E698K|TRPM2_uc002zew.1_Missense_Mutation_p.E698K|TRPM2_uc010gpt.1_Missense_Mutation_p.E698K|TRPM2_uc002zex.1_Missense_Mutation_p.E484K|TRPM2_uc002zey.1_Missense_Mutation_p.E211K	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	698	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCGGAAGGACGAAGAGAGAGC	0.627													14	26					0	0	0.004007	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959365	45959365	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:45959365G>A	uc002zfh.1	-	1	714	c.669C>T	c.(667-669)ACC>ACT	p.T223T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	223	20.|24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						TGCAGCAGGAGGTGGTGCAGC	0.657													7	62					0	0	0.000443	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999863	45999863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:45999863G>A	uc002zfl.1	-	1	619	c.593C>T	c.(592-594)TCA>TTA	p.S198L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	198	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTGGCAGCATGAAGTGGAAGC	0.632													43	74					0	0	0.002852	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021436	46021436	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:46021436C>T	uc002zfn.3	+	2	925	c.900C>T	c.(898-900)ACC>ACT	p.T300T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	305	26.|30 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCTGCACCACCTCCTGCTGCA	0.672													14	31					0	0	0.004990	0	0
KRTAP12-4	386684	broad.mit.edu	37	21	46074200	46074200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:46074200C>T	uc002zfs.1	-	1	377	c.332G>A	c.(331-333)GGC>GAC	p.G111D	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198698	NP_941971	P60329	KR124_HUMAN	keratin associated protein 12-4	111						keratin filament				ovary(1)	1						TGCTCAGCAGCCAGTGGGGGT	0.622													13	23					0	0	0.004990	0	0
KRTAP12-3	386683	broad.mit.edu	37	21	46078160	46078160	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:46078160C>G	uc002zft.2	+	1	312	c.264C>G	c.(262-264)ATC>ATG	p.I88M	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198697	NP_941970	P60328	KR123_HUMAN	keratin associated protein 12-3	88	13.|14 X 5 AA approximate repeats.					intermediate filament				central_nervous_system(1)	1						GCAGACCCATCTCCTGCAGCA	0.612													16	23					0	0	0.004990	0	0
ITGB2	3689	broad.mit.edu	37	21	46310002	46310002	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:46310002C>T	uc002zgd.2	-	11	1592	c.1548G>A	c.(1546-1548)CAG>CAA	p.Q516Q	ITGB2_uc002zge.2_Silent_p.Q516Q|ITGB2_uc002zgf.3_Silent_p.Q516Q|ITGB2_uc011afl.1_Silent_p.Q438Q|ITGB2_uc010gpw.2_Silent_p.Q459Q|ITGB2_uc002zgg.2_Silent_p.Q516Q	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	516	II.|Extracellular (Potential).|Cysteine-rich tandem repeats.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GGCACAGGCACTGCCCGCAGA	0.627													5	16					0	0	0.000602	0	0
COL18A1	80781	broad.mit.edu	37	21	46901891	46901891	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:46901891T>A	uc011afs.1	+	13	2892	c.2871T>A	c.(2869-2871)CCT>CCA	p.P957P	COL18A1_uc002zhg.2_Silent_p.P542P|COL18A1_uc002zhi.2_Silent_p.P722P	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	957	Triple-helical region 3 (COL3).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCCCAGGCCCTCCGGGAAGAG	0.597													15	14					0	0	0.001523	0	0
COL18A1	80781	broad.mit.edu	37	21	46927500	46927500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:46927500G>A	uc011afs.1	+	38	4499	c.4478G>A	c.(4477-4479)CGA>CAA	p.R1493Q	COL18A1_uc002zhg.2_Missense_Mutation_p.R1078Q|COL18A1_uc002zhi.2_Missense_Mutation_p.R1258Q|SLC19A1_uc010gpy.1_Intron|COL18A1_uc002zhj.2_Missense_Mutation_p.R59Q|COL18A1_uc002zhk.2_5'UTR	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1496	Nonhelical region 11 (NC11).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCACTCCCACGAGGGACGGTA	0.622													4	7					0	0	0.000602	0	0
SLC19A1	6573	broad.mit.edu	37	21	46945830	46945830	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:46945830C>A	uc002zhl.1	-	5	1313	c.1194G>T	c.(1192-1194)CTG>CTT	p.L398L	SLC19A1_uc010gpy.1_Silent_p.L398L|SLC19A1_uc011aft.1_Silent_p.L358L|SLC19A1_uc002zhm.1_Silent_p.L398L|SLC19A1_uc010gpz.1_Silent_p.L277L	NM_194255	NP_919231	P41440	S19A1_HUMAN	solute carrier family 19 member 1	398	Helical; (Probable).				folic acid metabolic process	integral to plasma membrane|membrane fraction	folic acid binding|folic acid transporter activity|methotrexate transporter activity|reduced folate carrier activity				0				Colorectal(79;0.0569)|READ - Rectum adenocarcinoma(84;0.172)		CCCCGAAGACCAGGGCACAGA	0.577													29	54					3.90053e-15	6.76462e-15	0.002445	1	0
COL6A2	1292	broad.mit.edu	37	21	47542842	47542842	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:47542842A>G	uc002zia.1	+	21	1744	c.1662A>G	c.(1660-1662)AAA>AAG	p.K554K	COL6A2_uc002zhy.1_Silent_p.K554K|COL6A2_uc002zhz.1_Silent_p.K554K|COL6A2_uc002zib.1_5'UTR	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	554	Triple-helical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		AAGGAGAGAAAGGAGAGCCTG	0.587													9	25					0	0	0.000673	0	0
FTCD	10841	broad.mit.edu	37	21	47570152	47570152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr21:47570152G>A	uc002zif.2	-	7	831	c.787C>T	c.(787-789)CCA>TCA	p.P263S	FTCD_uc002zig.2_Missense_Mutation_p.P263S|FTCD_uc002zih.2_Missense_Mutation_p.P263S|FTCD_uc010gqf.2_Missense_Mutation_p.P263S|FTCD_uc010gqg.1_Missense_Mutation_p.P132S	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	263	Formiminotransferase C-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	CCCACCACTGGGAGGCTCAGC	0.682													6	13					0	0	0.003080	0	0
GAB4	128954	broad.mit.edu	37	22	17447179	17447179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:17447179G>A	uc002zlw.2	-	6	1207	c.1099C>T	c.(1099-1101)CCT>TCT	p.P367S	GAB4_uc010gqs.1_3'UTR	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	367										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				GGCAGGGTAGGGGAGCCTGGG	0.577													12	16					0	0	0.001368	0	0
CECR1	51816	broad.mit.edu	37	22	17684653	17684654	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:17684653_17684654TC>GT	uc002zmk.1	-	3	764_765	c.552_553GA>AC	c.(550-555)AGGAAT>AGACAT	p.N185H	CECR1_uc010gqu.1_Missense_Mutation_p.N185H|CECR1_uc011agi.1_Missense_Mutation_p.N143H|CECR1_uc011agj.1_Missense_Mutation_p.N143H	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	185	PRB domain.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				AGAGTGAAATTCCTCAGCAAGC	0.525													7	11					0	0	0.004672	0	0
CECR2	27443	broad.mit.edu	37	22	18022581	18022581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:18022581C>T	uc010gqw.1	+	15	2809	c.2683C>T	c.(2683-2685)CCG>TCG	p.P895S	CECR2_uc010gqv.1_Missense_Mutation_p.P754S|CECR2_uc002zml.2_Missense_Mutation_p.P754S	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	937					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		TGGCCCTTTTCCGCAGGTAGC	0.627													16	46					0	0	0.001216	0	0
MICAL3	57553	broad.mit.edu	37	22	18300464	18300464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:18300464G>A	uc002zng.3	-	26	5316	c.4963C>T	c.(4963-4965)CTC>TTC	p.L1655F	MICAL3_uc011agl.1_Missense_Mutation_p.L1571F|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1655						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GAGCCCCTGAGAGTGGGGCGT	0.701													10	21					0	0	0.001855	0	0
RTN4R	65078	broad.mit.edu	37	22	20229682	20229682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:20229682G>A	uc002zrv.2	-	2	1175	c.974C>T	c.(973-975)ACC>ATC	p.T325I	RTN4R_uc002zru.2_Missense_Mutation_p.T97I	NM_023004	NP_075380	Q9BZR6	RTN4R_HUMAN	reticulon 4 receptor precursor	325					axonogenesis|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	anchored to membrane|cell surface|endoplasmic reticulum|plasma membrane	protein binding|receptor activity				0	Colorectal(54;0.0993)					CTCCTCATCGGTGGCCCTGCC	0.662													11	11					0	0	0.001368	0	0
SCARF2	91179	broad.mit.edu	37	22	20783619	20783619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:20783619G>A	uc002zsj.1	-	9	1553	c.1448C>T	c.(1447-1449)TCG>TTG	p.S483L	SCARF2_uc002zsk.1_Missense_Mutation_p.S478L	NM_153334	NP_699165	Q96GP6	SREC2_HUMAN	scavenger receptor class F, member 2 isoform 1	478	Cytoplasmic (Potential).				cell adhesion	integral to membrane	protein binding|receptor activity			breast(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CCTCCCAAGCGAAAGCTCCCT	0.582													4	7					0	0	0.000248	0	0
AIFM3	150209	broad.mit.edu	37	22	21329051	21329051	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:21329051C>T	uc002ztj.2	+	8	884	c.666C>T	c.(664-666)ATC>ATT	p.I222I	AIFM3_uc002ztk.2_Silent_p.I222I|AIFM3_uc002ztl.2_Silent_p.I228I|AIFM3_uc011ahx.1_Silent_p.I210I|AIFM3_uc002ztm.1_Silent_p.I34I	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	222					activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			CCGACCGGATCGTCCTGTGCA	0.652													15	25					0	0	0.000958	0	0
CCDC116	164592	broad.mit.edu	37	22	21989446	21989446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:21989446C>T	uc002zve.2	+	4	1187	c.1094C>T	c.(1093-1095)TCC>TTC	p.S365F	CCDC116_uc011aih.1_Missense_Mutation_p.S365F	NM_152612	NP_689825	Q8IYX3	CC116_HUMAN	coiled-coil domain containing 116	365										ovary(1)|skin(1)	2	Colorectal(54;0.105)					CCCTATGCTTCCCCCCGCCCC	0.632													8	17					0	0	0.000443	0	0
VPREB1	7441	broad.mit.edu	37	22	22599544	22599544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:22599544G>A	uc002zvx.1	+	2	259	c.233G>A	c.(232-234)AGC>AAC	p.S78N	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	78	Complementarity-determining-2.|Ig-like V-type.				immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		TCAGACAAGAGCCAGGGCCCC	0.582													31	44					0	0	0.002836	0	0
LOC96610	96610	broad.mit.edu	37	22	22724416	22724416	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:22724416G>A	uc011aim.1	+	43		c.4689G>A								Parts of antibodies, mostly variable regions.												0						CTGAGGATGAGGCTGAGTATT	0.562													10	11					0	0	0.001368	0	0
LOC96610	96610	broad.mit.edu	37	22	23114987	23114987	+	RNA	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:23114987A>C	uc011aim.1	+	237		c.11604A>C								Parts of antibodies, mostly variable regions.												0						CAACCCAGGGAACACCGCCAC	0.572													5	10					0	0	0.000602	0	0
LOC96610	96610	broad.mit.edu	37	22	23261724	23261724	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:23261724C>T	uc011aim.1	+	376		c.16507C>T			uc011aix.1_RNA					Parts of antibodies, mostly variable regions.												0						CAAGGCTGCCCCCTCGGTCAC	0.627													10	15					0	0	0.000978	0	0
LOC96610	96610	broad.mit.edu	37	22	23265077	23265077	+	RNA	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:23265077T>C	uc011aim.1	+	379		c.16898T>C								Parts of antibodies, mostly variable regions.												0						CCCTGCAGAATGCTCTTAGGC	0.652													7	15					0	0	0.003080	0	0
GNAZ	2781	broad.mit.edu	37	22	23465505	23465505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:23465505G>A	uc002zwu.1	+	3	1492	c.955G>A	c.(955-957)GAG>AAG	p.E319K	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	319						endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		GGAGACCAAGGAGATCTACTC	0.527													14	12					0	0	0.003163	0	0
LOC91316	91316	broad.mit.edu	37	22	23980795	23980795	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:23980795G>A	uc002zxh.3	-	5		c.3695C>T			LOC91316_uc002zxi.3_RNA|LOC91316_uc002zxk.3_RNA|LOC91316_uc010gua.2_RNA|LOC91316_uc002zxl.3_RNA|LOC91316_uc011aiz.1_RNA					Homo sapiens cDNA FLJ32313 fis, clone PROST2003232, weakly similar to BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31).												0						CCTGTGGGTGGGGTGGGGGCT	0.597													9	6					0	0	0.000443	0	0
RGL4	266747	broad.mit.edu	37	22	24037175	24037175	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:24037175A>T	uc002zxn.2	+	6	2225	c.1055A>T	c.(1054-1056)GAC>GTC	p.D352V	LOC91316_uc002zxh.3_5'Flank|LOC91316_uc002zxi.3_5'Flank|LOC91316_uc002zxk.3_RNA|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_RNA|LOC91316_uc002zxm.3_RNA|RGL4_uc002zxo.2_Missense_Mutation_p.D352V|RGL4_uc002zxp.1_Missense_Mutation_p.D216V|RGL4_uc002zxq.2_Missense_Mutation_p.D216V	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	352	Ras-GEF.				small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						TGCAAAAAAGACACTGCAGTG	0.453													25	26					0	0	0.001061	0	0
SUSD2	56241	broad.mit.edu	37	22	24584090	24584090	+	Silent	SNP	G	A	A	rs114640245	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:24584090G>A	uc002zzn.1	+	13	2372	c.2328G>A	c.(2326-2328)CCG>CCA	p.P776P		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	776	Sushi.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CACCCACCCCGAAGTGCCAGC	0.647													15	27					0	0	0.003163	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659664	24659664	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:24659664C>T	uc002zzs.3	+	7		c.3396C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CCACCTCCTCCATGCCTCGGC	0.627													7	13					0	0	0.003080	0	0
PIWIL3	440822	broad.mit.edu	37	22	25152644	25152644	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:25152644G>A	uc003abd.1	-	5	801	c.384C>T	c.(382-384)CTC>CTT	p.L128L	PIWIL3_uc011ajx.1_Silent_p.L19L|PIWIL3_uc011ajy.1_Silent_p.L19L|PIWIL3_uc010gut.1_Silent_p.L128L	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	128					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						AGTGGTTGGCGAGTAGCTGTA	0.428													5	19					0	0	0.000602	0	0
SGSM1	129049	broad.mit.edu	37	22	25264418	25264418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:25264418G>A	uc003abg.2	+	11	1227	c.1070G>A	c.(1069-1071)GGG>GAG	p.G357E	SGSM1_uc003abh.2_Missense_Mutation_p.G357E|SGSM1_uc010guu.1_Missense_Mutation_p.G357E|SGSM1_uc003abj.2_Missense_Mutation_p.G357E|SGSM1_uc003abi.1_Missense_Mutation_p.G332E	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	357						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CCCAAGGGCGGGCACCTCCTG	0.642													23	19					0	0	0.002780	0	0
TMEM211	255349	broad.mit.edu	37	22	25331514	25331514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:25331514G>A	uc003abk.1	-	3	201	c.176C>T	c.(175-177)TCC>TTC	p.S59F		NM_001001663	NP_001001663	Q6ICI0	TM211_HUMAN	transmembrane protein 211	130	Helical; (Potential).					integral to membrane					0						GATGAATGGGGAGGCAAGGCC	0.522													15	27					0	0	0.003163	0	0
IGLL3	91353	broad.mit.edu	37	22	25715826	25715826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:25715826G>A	uc003abr.2	+	2	548	c.448G>A	c.(448-450)GAC>AAC	p.D150N		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						TCTCATGAATGACTTCTATCT	0.582													21	91					0	0	0.001216	0	0
LRP5L	91355	broad.mit.edu	37	22	25753304	25753304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:25753304G>A	uc003abs.2	-	2	2821	c.356C>T	c.(355-357)TCC>TTC	p.S119F	LRP5L_uc011ajz.1_Missense_Mutation_p.S119F|LRP5L_uc010guw.1_Missense_Mutation_p.S119F	NM_182492	NP_872298	A4QPB2	LRP5L_HUMAN	low density lipoprotein receptor-related protein	119	LDL-receptor class B 3.										0						CCACCCGAGGGAAGCATTGAC	0.602													16	58					0	0	0.004990	0	0
MYO18B	84700	broad.mit.edu	37	22	26164828	26164828	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:26164828G>A	uc003abz.1	+	4	1195	c.945G>A	c.(943-945)GGG>GGA	p.G315G	MYO18B_uc003aca.1_Silent_p.G196G|MYO18B_uc010guy.1_Silent_p.G196G|MYO18B_uc010guz.1_Silent_p.G196G|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	315						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AAATCCCTGGGAGAAAGTGGG	0.532													8	11					0	0	0.003080	0	0
MYO18B	84700	broad.mit.edu	37	22	26181423	26181423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:26181423G>A	uc003abz.1	+	11	2591	c.2341G>A	c.(2341-2343)GAT>AAT	p.D781N	MYO18B_uc003aca.1_Missense_Mutation_p.D662N|MYO18B_uc010guy.1_Missense_Mutation_p.D662N|MYO18B_uc010guz.1_Missense_Mutation_p.D662N|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Missense_Mutation_p.D294N	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	781	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCAGATGGCAGATAGCAGCTC	0.617													3	6					0	0	0.000248	0	0
MYO18B	84700	broad.mit.edu	37	22	26231410	26231410	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:26231410G>T	uc003abz.1	+	17	3458	c.3208G>T	c.(3208-3210)GGG>TGG	p.G1070W	MYO18B_uc003aca.1_Missense_Mutation_p.G951W|MYO18B_uc010guy.1_Missense_Mutation_p.G952W|MYO18B_uc010guz.1_Missense_Mutation_p.G951W|MYO18B_uc011aka.1_Missense_Mutation_p.G224W|MYO18B_uc011akb.1_Missense_Mutation_p.G583W	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1070	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TGGGACTGAAGGTAAGGAAGC	0.562													27	43					1.88708e-17	3.27674e-17	0.001512	1	0
MYO18B	84700	broad.mit.edu	37	22	26422841	26422841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:26422841C>T	uc003abz.1	+	43	7151	c.6901C>T	c.(6901-6903)CTC>TTC	p.L2301F	MYO18B_uc003aca.1_Missense_Mutation_p.L2182F|MYO18B_uc010guy.1_Missense_Mutation_p.L2183F|MYO18B_uc010guz.1_Missense_Mutation_p.L2181F|MYO18B_uc011aka.1_Missense_Mutation_p.L1455F|MYO18B_uc011akb.1_Missense_Mutation_p.L1814F|MYO18B_uc010gva.1_Missense_Mutation_p.L284F|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2301						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CGAGGGAAACCTCTCGCTGAG	0.612													5	9					0	0	0.000602	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688992	26688992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:26688992C>T	uc003acb.2	+	2	871	c.715C>T	c.(715-717)CCC>TCC	p.P239S	SEZ6L_uc003acc.2_Missense_Mutation_p.P239S|SEZ6L_uc011akc.1_Missense_Mutation_p.P239S|SEZ6L_uc003acd.2_Missense_Mutation_p.P239S|SEZ6L_uc011akd.1_Missense_Mutation_p.P239S|SEZ6L_uc003ace.2_Missense_Mutation_p.P239S|SEZ6L_uc003acf.1_Missense_Mutation_p.P12S|SEZ6L_uc010gvc.1_Missense_Mutation_p.P12S	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	239	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GGACACCAGCCCCATGGCCCT	0.542													14	10					0	0	0.003163	0	0
SEZ6L	23544	broad.mit.edu	37	22	26692900	26692900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:26692900G>A	uc003acb.2	+	4	1172	c.1016G>A	c.(1015-1017)GGG>GAG	p.G339E	SEZ6L_uc003acc.2_Missense_Mutation_p.G339E|SEZ6L_uc011akc.1_Missense_Mutation_p.G339E|SEZ6L_uc003acd.2_Missense_Mutation_p.G339E|SEZ6L_uc011akd.1_Missense_Mutation_p.G339E|SEZ6L_uc003ace.2_Missense_Mutation_p.G339E|SEZ6L_uc003acf.1_Missense_Mutation_p.G112E|SEZ6L_uc010gvc.1_Missense_Mutation_p.G112E	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	339	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TCCATCCGCGGGGTGGACGGC	0.592													15	5					0	0	0.003163	0	0
TFIP11	24144	broad.mit.edu	37	22	26895212	26895212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:26895212G>A	uc003acr.2	-	8	1561	c.1187C>T	c.(1186-1188)ACC>ATC	p.T396I	TFIP11_uc003acs.2_Missense_Mutation_p.T396I|TFIP11_uc003act.2_Missense_Mutation_p.T396I	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	396					biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCGTCCAGGGTGAGGGGGTT	0.607													15	17					0	0	0.003163	0	0
CRYBB1	1414	broad.mit.edu	37	22	27003943	27003943	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:27003943G>A	uc003acy.1	-	4	412	c.342C>T	c.(340-342)TTC>TTT	p.F114F		NM_001887	NP_001878	P53674	CRBB1_HUMAN	crystallin, beta B1	114	Beta/gamma crystallin 'Greek key' 2.				visual perception		structural constituent of eye lens			ovary(1)	1						TCTCCAGGATGAACATCTCCC	0.562													15	35					0	0	0.003163	0	0
PITPNB	23760	broad.mit.edu	37	22	28306962	28306962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:28306962G>A	uc003adk.2	-	3	263	c.187C>T	c.(187-189)CAC>TAC	p.H63Y	PITPNB_uc011akh.1_Missense_Mutation_p.H65Y|PITPNB_uc003adl.2_Missense_Mutation_p.H63Y	NM_012399	NP_036531	P48739	PIPNB_HUMAN	phosphatidylinositol transfer protein, beta	63					lipid metabolic process|transport	Golgi apparatus	lipid binding			skin(1)	1						CTCTTTAGGTGATAAATTTTG	0.388													32	44					0	0	0.004289	0	0
EWSR1	2130	broad.mit.edu	37	22	29694761	29694761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:29694761C>T	uc003aet.2	+	14	1784	c.1456C>T	c.(1456-1458)CGC>TGC	p.R486C	EWSR1_uc003aev.2_Missense_Mutation_p.R491C|EWSR1_uc003aew.2_Missense_Mutation_p.R430C|EWSR1_uc003aex.2_Missense_Mutation_p.R485C|EWSR1_uc003aey.2_Missense_Mutation_p.R281C|EWSR1_uc003aez.2_Missense_Mutation_p.R147C	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	486	Arg/Gly/Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						ACCCATGGGTCGCATGGGAGG	0.577			T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma								37	59					0	0	0.003214	0	0
AP1B1	162	broad.mit.edu	37	22	29734987	29734987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:29734987G>A	uc003afj.2	-	16	2339	c.2155C>T	c.(2155-2157)CCC>TCC	p.P719S	AP1B1_uc003afi.2_Missense_Mutation_p.P712S|AP1B1_uc003afk.2_Missense_Mutation_p.P712S|AP1B1_uc003afl.2_Missense_Mutation_p.P712S|AP1B1_uc011ako.1_Missense_Mutation_p.P272S	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	719	Pro-rich (stalk region).				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						ACTGCTTTGGGGGCCACATAT	0.552													65	81					0	0	0.003610	0	0
ASCC2	84164	broad.mit.edu	37	22	30209463	30209463	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:30209463G>A	uc003agr.2	-	8	894	c.789C>T	c.(787-789)TTC>TTT	p.F263F	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Silent_p.F263F|ASCC2_uc011akr.1_Silent_p.F187F	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	263					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			AAGCCAAAGGGAAGATATCCA	0.418													26	42					0	0	0.004656	0	0
SEC14L3	266629	broad.mit.edu	37	22	30857576	30857576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:30857576C>T	uc003ahy.2	-	10	966	c.877G>A	c.(877-879)GAA>AAA	p.E293K	SEC14L3_uc003ahz.2_Missense_Mutation_p.E216K|SEC14L3_uc003aia.2_Missense_Mutation_p.E234K|SEC14L3_uc003aib.2_Missense_Mutation_p.E234K	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	293	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	ATCTCGTATTCCACTTGGTGT	0.592													11	10					0	0	0.000978	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951702	30951702	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:30951702G>A	uc003aig.1	-	4	650	c.510C>T	c.(508-510)TTC>TTT	p.F170F	GAL3ST1_uc003aih.1_Silent_p.F170F|GAL3ST1_uc003aii.1_Silent_p.F170F|GAL3ST1_uc010gvz.1_Silent_p.F170F	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	170	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						AGGAGGACTCGAACAAGCGGG	0.642													22	32					0	0	0.003330	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30952040	30952040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:30952040C>T	uc003aig.1	-	4	312	c.172G>A	c.(172-174)GAG>AAG	p.E58K	GAL3ST1_uc003aih.1_Missense_Mutation_p.E58K|GAL3ST1_uc003aii.1_Missense_Mutation_p.E58K|GAL3ST1_uc010gvz.1_Missense_Mutation_p.E58K	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	58	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						GCCTCTGGCTCGAGTGCAGGT	0.692													18	28					0	0	0.002780	0	0
PES1	23481	broad.mit.edu	37	22	30974830	30974830	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:30974830G>A	uc003aij.1	-	14	1751	c.1677C>T	c.(1675-1677)ATC>ATT	p.I559I	PES1_uc003aik.1_Silent_p.I554I|PES1_uc003ail.1_Silent_p.I542I|PES1_uc003aim.1_Silent_p.I558I|PES1_uc003ain.1_Silent_p.I420I|PES1_uc003aio.1_Silent_p.I420I	NM_014303	NP_055118	O00541	PESC_HUMAN	pescadillo homolog 1, containing BRCT domain	559	Required for 28S ribosomal RNA processing.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	chromosome|nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						TCACCTCTCGGATTTTTCGCC	0.542													21	29					0	0	0.001523	0	0
PATZ1	23598	broad.mit.edu	37	22	31740815	31740815	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:31740815G>A	uc003akq.2	-	1	1435	c.774C>T	c.(772-774)GCC>GCT	p.A258A	PATZ1_uc003akp.2_Silent_p.A258A|PATZ1_uc003akr.2_Silent_p.A258A|PATZ1_uc003aks.2_Silent_p.A258A|uc003akt.2_5'Flank	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	258					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						TCAGGGGAGGGGCACTGGATG	0.657													3	9					0	0	0.004672	0	0
DEPDC5	9681	broad.mit.edu	37	22	32242923	32242923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:32242923C>T	uc003als.2	+	31	3240	c.3098C>T	c.(3097-3099)TCT>TTT	p.S1033F	DEPDC5_uc011als.1_Missense_Mutation_p.S964F|DEPDC5_uc011alu.1_Missense_Mutation_p.S1042F|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.S1033F|DEPDC5_uc003alu.2_Missense_Mutation_p.S482F|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alw.1_Missense_Mutation_p.S363F|DEPDC5_uc003alw.2_Missense_Mutation_p.S331F|DEPDC5_uc011alx.1_Intron|DEPDC5_uc010gwk.2_Missense_Mutation_p.S37F	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1033					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TCAGCTCTCTCTGCCCTGTTG	0.572													21	31					0	0	0.003954	0	0
SLC5A1	6523	broad.mit.edu	37	22	32506127	32506127	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:32506127G>A	uc003amc.2	+	15	2154	c.1922G>A	c.(1921-1923)TGG>TAG	p.W641*	SLC5A1_uc011alz.1_Nonsense_Mutation_p.W514*	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	641	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						AAGCCTTTGTGGAGGACAGTG	0.488													26	47					0	0	0.004656	0	0
RFPL3	10738	broad.mit.edu	37	22	32754371	32754371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:32754371G>A	uc003amj.2	+	1	518	c.313G>A	c.(313-315)GAA>AAA	p.E105K	RFPL3_uc010gwn.2_Missense_Mutation_p.E76K	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	105							zinc ion binding			ovary(1)	1						CCACATCAAGGAACTGGAGCC	0.517													35	37					0	0	0.003755	0	0
BPIL2	254240	broad.mit.edu	37	22	32827380	32827380	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:32827380G>A	uc003amn.2	-	11	1171	c.1171C>T	c.(1171-1173)CTG>TTG	p.L391L	BPIL2_uc010gwo.2_Silent_p.L148L|BPIL2_uc011amb.1_Silent_p.L115L	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	391						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						AAAATAACCAGGCCAACACTG	0.383													18	20					0	0	0.001882	0	0
BPIL2	254240	broad.mit.edu	37	22	32829741	32829741	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:32829741G>A	uc003amn.2	-	9	943	c.943C>T	c.(943-945)CAA>TAA	p.Q315*	BPIL2_uc010gwo.2_Nonsense_Mutation_p.Q129*|BPIL2_uc011amb.1_Nonsense_Mutation_p.Q39*	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	315						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						TGAGAGTTTTGAACAAAATGG	0.408													28	31					0	0	0.002445	0	0
HMOX1	3162	broad.mit.edu	37	22	35783086	35783086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:35783086C>T	uc003ant.1	+	3	633	c.553C>T	c.(553-555)CGC>TGC	p.R185C		NM_002133	NP_002124	P09601	HMOX1_HUMAN	heme oxygenase (decyclizing) 1	185					angiogenesis|anti-apoptosis|cell death|cellular iron ion homeostasis|endothelial cell proliferation|erythrocyte homeostasis|heme catabolic process|heme oxidation|intracellular protein kinase cascade|low-density lipoprotein particle clearance|negative regulation of leukocyte migration|negative regulation of smooth muscle cell proliferation|positive regulation of chemokine biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of smooth muscle cell proliferation|protein homooligomerization|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hydrogen peroxide|response to nicotine|smooth muscle hyperplasia|transmembrane transport|wound healing involved in inflammatory response	endoplasmic reticulum membrane|extracellular space|microsome	enzyme binding|heme binding|heme oxygenase (decyclizing) activity|protein homodimerization activity|signal transducer activity			ovary(1)	1					NADH(DB00157)	CTACCGCTCCCGCATGAACTC	0.612													24	41					0	0	0.003330	0	0
MCM5	4174	broad.mit.edu	37	22	35808531	35808531	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:35808531C>T	uc003anu.3	+	8	1042	c.948C>T	c.(946-948)CCC>CCT	p.P316P	MCM5_uc010gwr.2_Silent_p.P125P|MCM5_uc003anv.3_Silent_p.P273P|MCM5_uc010gws.1_RNA|MCM5_uc003anw.1_Silent_p.P100P	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	316					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						CCGTGAGCCCCCAGGAGGAGG	0.617													37	47					0	0	0.001706	0	0
APOL1	8542	broad.mit.edu	37	22	36661671	36661671	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:36661671C>T	uc003apf.2	+	6	957	c.789C>T	c.(787-789)TCC>TCT	p.S263S	APOL1_uc011amn.1_Silent_p.S140S|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Silent_p.S279S|APOL1_uc011amo.1_Silent_p.S140S|APOL1_uc011amp.1_Silent_p.S263S|APOL1_uc011amq.1_Silent_p.S245S|APOL1_uc010gwx.2_Silent_p.S140S	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	263					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						AGAACATATCCAACTTTCTTT	0.498													19	27					0	0	0.000958	0	0
MYH9	4627	broad.mit.edu	37	22	36690308	36690308	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:36690308C>A	uc003apg.2	-	28	3898	c.3667G>T	c.(3667-3669)GAG>TAG	p.E1223*		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1223	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						CGCTCGTTCTCCAGAGTCTGC	0.592			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				23	28					3.73808e-20	6.49611e-20	0.005443	1	0
IFT27	11020	broad.mit.edu	37	22	37154424	37154424	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:37154424G>A	uc003apv.1	-	7	855	c.492C>T	c.(490-492)TTC>TTT	p.F164F	IFT27_uc003apu.1_Silent_p.F163F|IFT27_uc003apw.1_3'UTR	NM_006860	NP_006851	Q9BW83	IFT27_HUMAN	RAB, member of RAS oncogene family-like 4	164					small GTPase mediated signal transduction	intraflagellar transport particle B|microtubule-based flagellum	GTP binding				0						CAAGGCAGTGGAAAGGGGCTT	0.532											OREG0026524	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	58					0	0	0.001786	0	0
PVALB	5816	broad.mit.edu	37	22	37211239	37211239	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:37211239G>A	uc010gwz.2	-	2	132	c.102C>T	c.(100-102)GTC>GTT	p.V34V	PVALB_uc003apx.2_Silent_p.V34V	NM_002854	NP_002845	P20472	PRVA_HUMAN	parvalbumin	34							calcium ion binding			skin(1)	1						TCTTCAGGCCGACCATTTGGA	0.527													18	28					0	0	0.000958	0	0
CSF2RB	1439	broad.mit.edu	37	22	37322094	37322094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:37322094C>T	uc003aqa.3	+	4	483	c.266C>T	c.(265-267)CCC>CTC	p.P89L	CSF2RB_uc003aqc.3_Missense_Mutation_p.P89L	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	89	Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	TGCCCCCATCCCCGCTGCGTG	0.602													4	20					0	0	0.000248	0	0
C22orf33	339669	broad.mit.edu	37	22	37397939	37397939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:37397939G>A	uc003aqf.2	-	3	574	c.428C>T	c.(427-429)CCT>CTT	p.P143L	C22orf33_uc003aqe.2_Missense_Mutation_p.P58L	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	143											0						AATGTTGTTAGGAATGATGCT	0.607													5	3					0	0	0.001168	0	0
IL2RB	3560	broad.mit.edu	37	22	37524378	37524378	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:37524378G>A	uc003aqv.1	-	10	1545	c.1414C>T	c.(1414-1416)CTG>TTG	p.L472L		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	472	Cytoplasmic (Potential).				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	GGAGGCCCCAGGGGCTGGGGG	0.682													11	15					0	0	0.000673	0	0
SSTR3	6753	broad.mit.edu	37	22	37602969	37602969	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:37602969A>C	uc003ara.2	-	2	936	c.874T>G	c.(874-876)TTT>GTT	p.F292V	SSTR3_uc003arb.2_Missense_Mutation_p.F292V	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	292	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						TAGAGCCCAAAGAAGGCAGGC	0.612													29	39					0	0	0.001786	0	0
CARD10	29775	broad.mit.edu	37	22	37912287	37912287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:37912287C>T	uc003asx.1	-	3	395	c.392G>A	c.(391-393)GGC>GAC	p.G131D	CARD10_uc003ast.1_RNA|CARD10_uc003asy.1_Missense_Mutation_p.G131D	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	131					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					TTGGGTCAGGCCCTCAGGCCC	0.572													5	7					0	0	0.003080	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120903	38120903	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:38120903C>T	uc003atr.2	+	7	2611	c.2340C>T	c.(2338-2340)ACC>ACT	p.T780T	TRIOBP_uc003atu.2_Silent_p.T608T|TRIOBP_uc003atq.1_Silent_p.T780T|TRIOBP_uc003ats.1_Silent_p.T608T	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	780					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					ATCCCAGGACCTCCTCTCCCA	0.572													10	20					0	0	0.000673	0	0
SOX10	6663	broad.mit.edu	37	22	38373922	38373922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:38373922G>A	uc003aun.1	-	3	927	c.649C>T	c.(649-651)CCA>TCA	p.P217S	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Missense_Mutation_p.P217S	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	217						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					CCCTCTCCTGGGTGCCGGTGG	0.687													8	11					0	0	0.003080	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823898	38823898	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:38823898G>A	uc003avs.1	-	2	337	c.240C>T	c.(238-240)ATC>ATT	p.I80I	KCNJ4_uc003avt.1_Silent_p.I80I	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	80	Helical; Name=M1; (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					GGAAGAAGGCGATACACCAGA	0.572													14	10					0	0	0.003163	0	0
APOBEC3F	200316	broad.mit.edu	37	22	39441500	39441500	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:39441500C>T	uc003aww.2	+	4	812	c.519C>T	c.(517-519)TTC>TTT	p.F173F	APOBEC3F_uc011aog.1_Silent_p.F173F	NM_145298	NP_660341	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding				0	Melanoma(58;0.04)					GGTACAAATTCGATGACAATT	0.507													54	79					0	0	0.003610	0	0
APOBEC3H	164668	broad.mit.edu	37	22	39497337	39497337	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:39497337G>A	uc011aoh.1	+	3	312	c.246G>A	c.(244-246)TGG>TGA	p.W82*	APOBEC3H_uc011aoi.1_5'Flank|APOBEC3H_uc003axa.3_5'Flank	NM_181773	NP_861438	Q6NTF7	ABC3H_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	82					DNA cytosine deamination|negative regulation of retroviral genome replication|negative regulation of transposition	cytoplasm|nucleus	cytidine deaminase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Melanoma(58;0.04)					ACCTCACGTGGAGCCCCTGCT	0.537													21	34					0	0	0.002299	0	0
RPL3	6122	broad.mit.edu	37	22	39710186	39710186	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:39710186T>A	uc003axi.2	-	7	945	c.877A>T	c.(877-879)ATC>TTC	p.I293F	RPL3_uc003axh.2_Missense_Mutation_p.I244F|RPL3_uc003axj.2_Missense_Mutation_p.I141F|RPL3_uc010gxx.2_Missense_Mutation_p.I241F|RPL3_uc003axg.2_Missense_Mutation_p.I241F|RPL3_uc003axk.1_Missense_Mutation_p.I141F	NM_000967	NP_000958	P39023	RL3_HUMAN	ribosomal protein L3 isoform a	293					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome			breast(1)|kidney(1)	2	Melanoma(58;0.04)					CCGTCCTTGATAAGGTAGCCC	0.478											OREG0026574	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	40					0	0	0.001786	0	0
SMCR7L	54471	broad.mit.edu	37	22	39908004	39908004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:39908004C>T	uc003axx.2	+	4	793	c.295C>T	c.(295-297)CCC>TCC	p.P99S	SMCR7L_uc003axw.2_Missense_Mutation_p.P99S|SMCR7L_uc010gxz.1_5'UTR|SMCR7L_uc003axy.2_5'UTR	NM_019008	NP_061881	Q9NQG6	SMC7L_HUMAN	hypothetical protein LOC54471	99						integral to membrane|mitochondrion				central_nervous_system(1)	1	Melanoma(58;0.04)					GCAGACCCTTCCCACAGACTC	0.532													24	46					0	0	0.001786	0	0
ATF4	468	broad.mit.edu	37	22	39918017	39918017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:39918017C>T	uc003axz.2	+	3	746	c.466C>T	c.(466-468)CCC>TCC	p.P156S	ATF4_uc011aol.1_Missense_Mutation_p.P68S|ATF4_uc003aya.2_Missense_Mutation_p.P156S	NM_182810	NP_877962	P18848	ATF4_HUMAN	activating transcription factor 4	156					cellular amino acid metabolic process|gluconeogenesis|positive regulation of transcription from RNA polymerase II promoter|response to endoplasmic reticulum stress|transcription from RNA polymerase II promoter	cytoplasm|plasma membrane	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Melanoma(58;0.04)					CCAGGTTGCCCCCTTCACCTT	0.532													37	51					0	0	0.004878	0	0
CACNA1I	8911	broad.mit.edu	37	22	40038817	40038817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:40038817G>A	uc003ayc.2	+	7	1072	c.1072G>A	c.(1072-1074)GGC>AGC	p.G358S	CACNA1I_uc003ayd.2_Missense_Mutation_p.G358S|CACNA1I_uc003aye.2_Missense_Mutation_p.G273S|CACNA1I_uc003ayf.2_Missense_Mutation_p.G273S	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	358	I.|Extracellular (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CACTCTGGAAGGCTGGGTGGA	0.527													3	5					0	0	0.004672	0	0
CACNA1I	8911	broad.mit.edu	37	22	40064362	40064362	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:40064362G>A	uc003ayc.2	+	24	4170	c.4170G>A	c.(4168-4170)CTG>CTA	p.L1390L	CACNA1I_uc003ayd.2_Silent_p.L1355L|CACNA1I_uc003aye.2_Silent_p.L1305L|CACNA1I_uc003ayf.2_Silent_p.L1270L	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1390	Extracellular (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACAATGGACTGGATGCTGTTG	0.567													6	15					0	0	0.001984	0	0
CACNA1I	8911	broad.mit.edu	37	22	40075813	40075813	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:40075813C>T	uc003ayc.2	+	33	5481	c.5481C>T	c.(5479-5481)TCC>TCT	p.S1827S	CACNA1I_uc003ayd.2_Silent_p.S1792S|CACNA1I_uc003aye.2_Silent_p.S1742S|CACNA1I_uc003ayf.2_Silent_p.S1707S	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1827	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TGTCGGGCTCCATCTTCCACC	0.612													9	7					0	0	0.000673	0	0
CACNA1I	8911	broad.mit.edu	37	22	40078599	40078599	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:40078599C>T	uc003ayc.2	+	35	5763	c.5763C>T	c.(5761-5763)TTC>TTT	p.F1921F	CACNA1I_uc003ayd.2_Silent_p.F1886F|CACNA1I_uc003aye.2_Silent_p.F1836F|CACNA1I_uc003ayf.2_Silent_p.F1801F	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1921	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CAGAGAACTTCCTGTGTGAGA	0.612													15	16					0	0	0.002450	0	0
ENTHD1	150350	broad.mit.edu	37	22	40217101	40217101	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:40217101C>T	uc003ayg.2	-	5	980	c.729G>A	c.(727-729)TTG>TTA	p.L243L		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	243										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					GATCATCATCCAAAAATGTCA	0.388													14	19					0	0	0.003163	0	0
ENTHD1	150350	broad.mit.edu	37	22	40283624	40283624	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:40283624C>T	uc003ayg.2	-	2	380	c.129G>A	c.(127-129)TTG>TTA	p.L43L		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	43	ENTH.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					TGTTGAAAGTCAAGTCACTGA	0.423													37	42					0	0	0.003755	0	0
FAM83F	113828	broad.mit.edu	37	22	40417334	40417334	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:40417334C>T	uc003ayk.1	+	4	914	c.820C>T	c.(820-822)CTG>TTG	p.L274L		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	274										breast(1)	1						AAACCTCCTCCTGCTCCTGAC	0.597													41	70					0	0	0.002522	0	0
NFAM1	150372	broad.mit.edu	37	22	42807586	42807586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:42807586G>A	uc003bcn.3	-	2	316	c.278C>T	c.(277-279)CCT>CTT	p.P93L		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	93	Extracellular (Potential).|Ig-like V-type.				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						TGGCTTCTTAGGGCTCCTCTG	0.552													31	34					0	0	0.003755	0	0
EFCAB6	64800	broad.mit.edu	37	22	43996075	43996075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:43996075G>A	uc003bdy.1	-	23	2965	c.2750C>T	c.(2749-2751)TCG>TTG	p.S917L	EFCAB6_uc003bdz.1_Missense_Mutation_p.S765L|EFCAB6_uc010gzi.1_Missense_Mutation_p.S765L|EFCAB6_uc010gzj.1_Missense_Mutation_p.S143L	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	917	EF-hand 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GACAGCAGGCGAATAGTTAAT	0.428													90	130					0	0	0.003610	0	0
EFCAB6	64800	broad.mit.edu	37	22	44028011	44028011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:44028011G>A	uc003bdy.1	-	19	2421	c.2206C>T	c.(2206-2208)CCT>TCT	p.P736S	EFCAB6_uc003bdz.1_Missense_Mutation_p.P584S|EFCAB6_uc010gzi.1_Missense_Mutation_p.P584S|EFCAB6_uc010gzj.1_Missense_Mutation_p.P34S|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	736					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AGCCTCCTAGGGAAAAGCTTC	0.567													39	60					0	0	0.002222	0	0
UPK3A	7380	broad.mit.edu	37	22	45689117	45689117	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:45689117C>T	uc003bfy.2	+	5	633	c.627C>T	c.(625-627)ATC>ATT	p.I209I	UPK3A_uc010gzy.2_Silent_p.I88I	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	209	Helical; (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		GAGGCATGATCGTCATCACTT	0.617													20	25					0	0	0.001523	0	0
SMC1B	27127	broad.mit.edu	37	22	45749993	45749993	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:45749993C>T	uc003bgc.2	-	21	3190	c.3138G>A	c.(3136-3138)AAG>AAA	p.K1046K	SMC1B_uc003bgd.2_Silent_p.K1046K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	1046	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		GTCTGGCTTCCTTTCTGCTGG	0.368													55	69					0	0	0.003610	0	0
PKDREJ	10343	broad.mit.edu	37	22	46656048	46656048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:46656048G>A	uc003bhh.2	-	1	3172	c.3172C>T	c.(3172-3174)CTC>TTC	p.L1058F		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1058	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GACACAGGGAGGCAGACTACA	0.562													10	13					0	0	0.000443	0	0
PKDREJ	10343	broad.mit.edu	37	22	46656898	46656898	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:46656898C>T	uc003bhh.2	-	1	2322	c.2322G>A	c.(2320-2322)CAG>CAA	p.Q774Q		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	774	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TGGCACGTTTCTGAGCATCCC	0.418													25	48					0	0	0.001271	0	0
MOV10L1	54456	broad.mit.edu	37	22	50596499	50596499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:50596499G>A	uc003bjj.2	+	23	3163	c.3080G>A	c.(3079-3081)CGG>CAG	p.R1027Q	MOV10L1_uc003bjk.3_Missense_Mutation_p.R1027Q|MOV10L1_uc011arp.1_Missense_Mutation_p.R1007Q|MOV10L1_uc003bjl.2_Missense_Mutation_p.R154Q|MOV10L1_uc003bjm.1_Missense_Mutation_p.R70Q	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	1027					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		AGCGAGGCACGGGAGGGAAAA	0.443													25	45					0	0	0.001512	0	0
MAPK12	6300	broad.mit.edu	37	22	50696677	50696677	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:50696677C>T	uc003bkm.1	-	3	460	c.309G>A	c.(307-309)ACG>ACA	p.T103T	MAPK12_uc003bkn.2_5'UTR|MAPK12_uc003bko.2_Silent_p.T23T|MAPK12_uc003bkl.1_Silent_p.T103T|MAPK12_uc003bkp.2_5'Flank|MAPK12_uc003bkq.2_5'UTR|MAPK12_uc010haw.2_Silent_p.T103T	NM_002969	NP_002960	P53778	MK12_HUMAN	mitogen-activated protein kinase 12	103	Protein kinase.				cell cycle arrest|DNA damage induced protein phosphorylation|muscle organ development|myoblast differentiation|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|Ras protein signal transduction	mitochondrion|nucleoplasm	ATP binding|magnesium ion binding|MAP kinase activity|protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CTCACAAGTCCGTGAAGTCAT	0.612													19	26					0	0	0.001882	0	0
PLXNB2	23654	broad.mit.edu	37	22	50728408	50728408	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:50728408G>A	uc003bkv.3	-	3	712	c.606C>T	c.(604-606)GAC>GAT	p.D202D		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	202	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGGTGGCGTGGTCCGTGTAGG	0.602													15	20					0	0	0.004007	0	0
RPL23AP82	284942	broad.mit.edu	37	22	51237319	51237319	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr22:51237319C>T	uc003bni.2	+	4		c.774C>T			RPL23AP82_uc003bns.2_RNA|RPL23AP82_uc010hbj.2_RNA	NR_026981				Homo sapiens cDNA FLJ75396 complete cds.												0						CATCAAGTTTCCGCTGGCCAC	0.537													19	24					0	0	0.005443	0	0
CNTN6	27255	broad.mit.edu	37	3	1418760	1418760	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:1418760G>A	uc003boz.2	+	17	2433	c.2166_splice	c.e17+1	p.E722_splice	CNTN6_uc011asj.1_Splice_Site_p.E650_splice|CNTN6_uc003bpa.2_Splice_Site_p.E722_splice	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor						axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TACGTGGGAGGTAATTTTCTG	0.393													33	45					0	0	0.002836	0	0
CNTN4	152330	broad.mit.edu	37	3	2861227	2861227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:2861227G>A	uc003bpc.2	+	6	637	c.416G>A	c.(415-417)GGA>GAA	p.G139E	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.G139E	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	139	Ig-like C2-type 2.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		CGAGGTCAAGGAATGGTGCTA	0.408													25	46					0	0	0.001512	0	0
CNTN4	152330	broad.mit.edu	37	3	2908486	2908486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:2908486C>T	uc003bpc.2	+	7	726	c.505C>T	c.(505-507)CGC>TGC	p.R169C	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.R169C	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	169	Ig-like C2-type 2.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TCAGGATAATCGCCGCTTTGT	0.383													36	68					0	0	0.003610	0	0
CNTN4	152330	broad.mit.edu	37	3	2944560	2944560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:2944560G>A	uc003bpc.2	+	11	1299	c.1078G>A	c.(1078-1080)GAT>AAT	p.D360N	CNTN4_uc003bpb.1_Missense_Mutation_p.D32N|CNTN4_uc003bpd.1_Missense_Mutation_p.D360N|CNTN4_uc003bpe.2_Missense_Mutation_p.D32N|CNTN4_uc003bpf.2_Missense_Mutation_p.D32N	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	360	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TCTTTCACAGGATAGAATTCA	0.358													5	14					0	0	0.000602	0	0
CNTN4	152330	broad.mit.edu	37	3	2967375	2967375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:2967375G>A	uc003bpc.2	+	12	1491	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	CNTN4_uc003bpb.1_Missense_Mutation_p.E96K|CNTN4_uc003bpd.1_Missense_Mutation_p.E424K|CNTN4_uc003bpe.2_Missense_Mutation_p.E96K|CNTN4_uc003bpf.2_Missense_Mutation_p.E96K	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	424	Ig-like C2-type 5.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AGTGGGAGGTGAAGTTGTCAT	0.363													74	97					0	0	0.003610	0	0
CNTN4	152330	broad.mit.edu	37	3	3078992	3078992	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:3078992A>T	uc003bpc.2	+	17	2293	c.2072A>T	c.(2071-2073)AAA>ATA	p.K691I	CNTN4_uc003bpb.1_Missense_Mutation_p.K362I|CNTN4_uc003bpd.1_Missense_Mutation_p.K691I|CNTN4_uc003bpe.2_Missense_Mutation_p.K363I|CNTN4_uc003bpf.2_Missense_Mutation_p.K362I|CNTN4_uc003bpg.2_5'Flank	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	691	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		CCCTCAGAGAAACGGAGAACA	0.522													42	83					0	0	0.002852	0	0
ITPR1	3708	broad.mit.edu	37	3	4735411	4735411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:4735411G>A	uc003bqa.2	+	33	4588	c.4240G>A	c.(4240-4242)GAC>AAC	p.D1414N	ITPR1_uc010hca.1_Missense_Mutation_p.D1399N|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.D345N	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1423	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GACCCACGAGGACTGCATCCC	0.602													4	10					0	0	0.000602	0	0
SRGAP3	9901	broad.mit.edu	37	3	9034620	9034620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:9034620G>A	uc003brf.1	-	20	3204	c.2528C>T	c.(2527-2529)TCG>TTG	p.S843L	SRGAP3_uc003brg.1_Missense_Mutation_p.S819L	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	843					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GCCGTAATCCGAGATGTGCTC	0.557			T	RAF1	pilocytic astrocytoma								12	36					0	0	0.001368	0	0
SRGAP3	9901	broad.mit.edu	37	3	9094804	9094804	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:9094804G>A	uc003brf.1	-	9	1906	c.1230C>T	c.(1228-1230)TCC>TCT	p.S410S	SRGAP3_uc003brg.1_Silent_p.S410S|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brj.1_Silent_p.S270S	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	410					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CCGACTTGACGGACTCTGTCG	0.488			T	RAF1	pilocytic astrocytoma								12	25					0	0	0.000978	0	0
LHFPL4	375323	broad.mit.edu	37	3	9543970	9543971	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:9543970_9543971GG>AA	uc003bry.2	-	4	954_955	c.668_669CC>TT	c.(667-669)TCC>TTT	p.S223F		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	223						integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					GCCGCAACACGGAGCTTACTGT	0.48													9	10					0	0	0.004672	0	0
TTLL3	26140	broad.mit.edu	37	3	9877137	9877137	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:9877137G>A	uc003btg.2	+	13	2499	c.2283G>A	c.(2281-2283)GCG>GCA	p.A761A	ARPC4_uc003btc.1_Intron	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	761					axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					TGGATGGGGCGAGGCCGTGTA	0.562													49	73					0	0	0.003610	0	0
IL17RE	132014	broad.mit.edu	37	3	9952858	9952858	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:9952858G>A	uc003btu.2	+	11	1143	c.1026G>A	c.(1024-1026)AAG>AAA	p.K342K	CIDEC_uc003bto.2_Intron|IL17RE_uc011atn.1_RNA|IL17RE_uc003btw.2_Silent_p.K342K|IL17RE_uc003btx.2_Silent_p.K226K|IL17RE_uc010hcq.2_Silent_p.K342K|IL17RE_uc003bty.2_RNA	NM_153483	NP_705616	Q8NFR9	I17RE_HUMAN	interleukin 17 receptor E isoform 1	342	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane	receptor activity			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(96;5.34e-64)		TCTGCTTCAAGGTACAACCAT	0.502													54	57					0	0	0.003610	0	0
IL17RC	84818	broad.mit.edu	37	3	9972588	9972588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:9972588G>A	uc003bua.2	+	16	1797	c.1561G>A	c.(1561-1563)GAT>AAT	p.D521N	CIDEC_uc003bto.2_Intron|IL17RC_uc003btz.2_Missense_Mutation_p.D450N|IL17RC_uc011atp.1_Missense_Mutation_p.D289N|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Missense_Mutation_p.D435N|IL17RC_uc010hct.2_Missense_Mutation_p.D450N|IL17RC_uc010hcu.2_Missense_Mutation_p.D433N|IL17RC_uc010hcv.2_Missense_Mutation_p.D418N|IL17RC_uc011atq.1_Missense_Mutation_p.D435N|IL17RC_uc003buc.2_5'UTR|IL17RC_uc003bue.2_Missense_Mutation_p.D86N|CRELD1_uc003buf.2_5'Flank|CRELD1_uc003bug.2_5'Flank|CRELD1_uc003buh.2_5'Flank|CRELD1_uc003bui.2_5'Flank	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	521	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						GCTATGGGACGATGACTTGGG	0.512													39	81					0	0	0.003610	0	0
SLC6A1	6529	broad.mit.edu	37	3	11067521	11067521	+	Silent	SNP	C	T	T	rs35450949	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:11067521C>T	uc010hdq.2	+	9	1323	c.912C>T	c.(910-912)ATC>ATT	p.I304I		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	304	Helical; Name=6; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GGTCCCTGATCGCTCTCGGGA	0.532													36	36					0	0	0.001706	0	0
SYN2	6854	broad.mit.edu	37	3	12228889	12228889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:12228889G>A	uc003bwm.2	+	16	1554	c.1390G>A	c.(1390-1392)GGA>AGA	p.G464R	SYN2_uc003bwn.2_Missense_Mutation_p.G138R	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	464					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						GCAACCCCAAGGAATGCAGCC	0.428													26	32					0	0	0.001061	0	0
Unknown	0	broad.mit.edu	37	3	12299782	12299782	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:12299782G>A	uc003bwp.1	-	1		c.171C>T				NR_003112				NR_003112																		GGCAGATTGGGAAAGTCCAGG	0.498													21	26					0	0	0.001882	0	0
WNT7A	7476	broad.mit.edu	37	3	13860868	13860868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:13860868G>A	uc003bye.1	-	4	928	c.623C>T	c.(622-624)TCG>TTG	p.S208L		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	208					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						GGTGGTGCACGAGCCTGACAC	0.602													38	51					0	0	0.001287	0	0
WNT7A	7476	broad.mit.edu	37	3	13916496	13916496	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:13916496C>T	uc003bye.1	-	2	551	c.246G>A	c.(244-246)TGG>TGA	p.W82*		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	82					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						CAGAGCAGTTCCAGCGGCCAT	0.602													5	29					0	0	0.001984	0	0
GRIP2	80852	broad.mit.edu	37	3	14535314	14535314	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:14535314C>T	uc011avi.1	-	25	3285	c.3285G>A	c.(3283-3285)CGG>CGA	p.R1095R	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Silent_p.R626R	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	997	PDZ 7.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						AGTCGAAGTCCCGTGTACGGA	0.632													7	12					0	0	0.003080	0	0
C3orf20	84077	broad.mit.edu	37	3	14724464	14724464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:14724464G>A	uc003byy.2	+	3	648	c.244G>A	c.(244-246)GAA>AAA	p.E82K	C3orf20_uc003byz.2_Intron|C3orf20_uc003bza.2_Intron|C3orf20_uc003byx.1_Missense_Mutation_p.E82K	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	82						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GGTGCTCATGGAACCCACCTT	0.507													18	21					0	0	0.001882	0	0
C3orf20	84077	broad.mit.edu	37	3	14731545	14731545	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:14731545T>G	uc003byy.2	+	5	1071	c.667T>G	c.(667-669)TAC>GAC	p.Y223D	C3orf20_uc003byz.2_Missense_Mutation_p.Y101D|C3orf20_uc003bza.2_Missense_Mutation_p.Y101D|C3orf20_uc003byx.1_Missense_Mutation_p.Y223D	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	223						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GAACTCGCCTTACCAGCTGAT	0.458													26	62					0	0	0.001271	0	0
FGD5	152273	broad.mit.edu	37	3	14861370	14861370	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:14861370G>A	uc003bzc.2	+	1	902	c.792G>A	c.(790-792)GAG>GAA	p.E264E	FGD5_uc011avk.1_Silent_p.E264E	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	264	Glu-rich.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GGGTCCAGGAGGCAGAGACAG	0.622													10	7					0	0	0.000443	0	0
FGD5	152273	broad.mit.edu	37	3	14861823	14861823	+	Silent	SNP	C	T	T	rs112305534	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:14861823C>T	uc003bzc.2	+	1	1355	c.1245C>T	c.(1243-1245)GTC>GTT	p.V415V	FGD5_uc011avk.1_Silent_p.V415V	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	415					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						ATGTGGTGGTCGTGCTGGAGG	0.677													10	18					0	0	0.000443	0	0
FGD5	152273	broad.mit.edu	37	3	14863037	14863037	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:14863037A>G	uc003bzc.2	+	1	2569	c.2459A>G	c.(2458-2460)TAC>TGC	p.Y820C	FGD5_uc011avk.1_Missense_Mutation_p.Y820C	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	820					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						AATGATGGCTACGTGGACATG	0.512													23	33					0	0	0.001882	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15115695	15115695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:15115695G>A	uc003bzm.1	-	14	2563	c.1949C>T	c.(1948-1950)TCC>TTC	p.S650F	ZFYVE20_uc010hek.1_Missense_Mutation_p.S650F	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	650	Necessary for the interaction with RAB5A.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						AGGGTCTAAGGAAACCCCTGC	0.557													27	39					0	0	0.001512	0	0
CAPN7	23473	broad.mit.edu	37	3	15269432	15269432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:15269432C>T	uc003bzn.2	+	7	1082	c.812C>T	c.(811-813)CCT>CTT	p.P271L		NM_014296	NP_055111	Q9Y6W3	CAN7_HUMAN	calpain 7	271	Calpain catalytic.				proteolysis	nucleus	calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1						ACCAACAATCCTACAATGATA	0.338													16	25					0	0	0.004990	0	0
GALNTL2	117248	broad.mit.edu	37	3	16216934	16216934	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:16216934G>A	uc003car.3	+	1	751	c.276G>A	c.(274-276)GAG>GAA	p.E92E	GALNTL2_uc003caq.3_Intron	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	92	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CACTGCGGGAGGATCAGCTGC	0.612													9	15					0	0	0.000673	0	0
PLCL2	23228	broad.mit.edu	37	3	17052122	17052122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:17052122G>A	uc011awc.1	+	5	1365	c.1260G>A	c.(1258-1260)ATG>ATA	p.M420I	PLCL2_uc010het.1_Intron|PLCL2_uc011awd.1_Missense_Mutation_p.M302I	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	428	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GTCAGGATATGAAGCAACCTC	0.408													61	80					0	0	0.003610	0	0
PLCL2	23228	broad.mit.edu	37	3	17052786	17052786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:17052786G>A	uc011awc.1	+	5	2029	c.1924G>A	c.(1924-1926)GAA>AAA	p.E642K	PLCL2_uc011awd.1_Missense_Mutation_p.E524K	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	650	PI-PLC Y-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TTCCTTTAATGAAGTGCTTGC	0.413													42	65					0	0	0.003214	0	0
PLCL2	23228	broad.mit.edu	37	3	17053303	17053303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:17053303C>T	uc011awc.1	+	5	2546	c.2441C>T	c.(2440-2442)CCT>CTT	p.P814L	PLCL2_uc011awd.1_Missense_Mutation_p.P696L	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	822	C2.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						ATCAACCTGCCTGAACTGGCC	0.458													20	26					0	0	0.001216	0	0
TBC1D5	9779	broad.mit.edu	37	3	17279727	17279728	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:17279727_17279728GG>AA	uc003cbf.2	-	17	3180_3181	c.1515_1516CC>TT	c.(1513-1518)AGCCAT>AGTTAT	p.H506Y	TBC1D5_uc010heu.2_Missense_Mutation_p.H93Y|TBC1D5_uc010hev.2_Missense_Mutation_p.H506Y|TBC1D5_uc003cbe.2_Missense_Mutation_p.H506Y|TBC1D5_uc010hew.1_Missense_Mutation_p.H458Y	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	506						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						TGCAAGTGATGGCTTGGGGCCT	0.5													21	29					0	0	0.004672	0	0
TBC1D5	9779	broad.mit.edu	37	3	17333420	17333420	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:17333420C>T	uc003cbf.2	-	15	2877	c.1212G>A	c.(1210-1212)CTG>CTA	p.L404L	TBC1D5_uc010heu.2_Intron|TBC1D5_uc010hev.2_Silent_p.L404L|TBC1D5_uc003cbe.2_Silent_p.L404L|TBC1D5_uc010hew.1_Silent_p.L356L	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	404						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						CCTTAAGAATCAGTGAGTGTA	0.403													18	30					0	0	0.001216	0	0
RPL15	6138	broad.mit.edu	37	3	23959495	23959495	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:23959495C>G	uc003ccn.2	+	2	181	c.145C>G	c.(145-147)CGC>GGC	p.R49G	NKIRAS1_uc003cck.2_Intron|NKIRAS1_uc003ccj.2_5'Flank|NKIRAS1_uc003ccl.2_5'Flank|NKIRAS1_uc003ccm.2_5'Flank|RPL15_uc011awi.1_Missense_Mutation_p.R49G|RPL15_uc011awj.1_Missense_Mutation_p.R49G|RPL15_uc003cco.2_Missense_Mutation_p.R49G|RPL15_uc003ccp.2_Missense_Mutation_p.R49G|RPL15_uc003ccq.2_Missense_Mutation_p.R49G|RPL15_uc003ccr.2_Missense_Mutation_p.R49G	NM_002948	NP_002939	P61313	RL15_HUMAN	ribosomal protein L15	49					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome			ovary(1)	1						TGATAAAGCGCGCCGACTGGG	0.557													14	24					0	0	0.004007	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751401	26751401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:26751401C>T	uc003cdp.2	+	2	827	c.238C>T	c.(238-240)CCC>TCC	p.P80S	LRRC3B_uc003cdq.2_Missense_Mutation_p.P80S	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	80	LRR 1.					integral to membrane		p.P80P(1)		pancreas(2)|ovary(1)|skin(1)	4						CACATCTATTCCCAATGAAAT	0.403													21	22					0	0	0.002299	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751814	26751814	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:26751814G>A	uc003cdp.2	+	2	1240	c.651G>A	c.(649-651)GTG>GTA	p.V217V	LRRC3B_uc003cdq.2_Silent_p.V217V	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	217	Helical; (Potential).					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						TCACTATGGTGATCTCATATG	0.468													10	17					0	0	0.000673	0	0
SLC4A7	9497	broad.mit.edu	37	3	27460060	27460060	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:27460060A>T	uc003cdv.2	-	11	1620	c.1549T>A	c.(1549-1551)TTT>ATT	p.F517I	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.F398I|SLC4A7_uc011aww.1_Missense_Mutation_p.F526I|SLC4A7_uc011awx.1_Missense_Mutation_p.F513I|SLC4A7_uc011awy.1_Missense_Mutation_p.F509I|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.F398I|SLC4A7_uc011axb.1_Missense_Mutation_p.F513I|SLC4A7_uc010hfl.2_Missense_Mutation_p.F67I|SLC4A7_uc003cdw.2_Missense_Mutation_p.F393I	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	517	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						TGATCTAAAAATTCATCAATT	0.353													7	18					0	0	0.001984	0	0
ZCWPW2	152098	broad.mit.edu	37	3	28476733	28476733	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:28476733C>T	uc003ceh.2	+	4	633	c.465C>T	c.(463-465)TTC>TTT	p.F155F	ZCWPW2_uc003cei.2_Silent_p.F155F|ZCWPW2_uc010hfo.2_5'UTR	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	155	PWWP.						zinc ion binding			ovary(2)	2						AGGCAACATTCGTTGGACATT	0.333													41	44					0	0	0.003610	0	0
TRIM71	131405	broad.mit.edu	37	3	32932809	32932809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:32932809G>A	uc003cff.2	+	4	2176	c.2113G>A	c.(2113-2115)GAT>AAT	p.D705N		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	705	NHL 3.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						CTACCCTTGGGATGTGGCGGT	0.517													10	22					0	0	0.000673	0	0
ARPP21	10777	broad.mit.edu	37	3	35732430	35732430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:35732430G>A	uc003cgb.2	+	9	883	c.619G>A	c.(619-621)GGA>AGA	p.G207R	ARPP21_uc003cga.2_Missense_Mutation_p.G207R|ARPP21_uc011axy.1_Missense_Mutation_p.G207R|ARPP21_uc003cgf.2_Missense_Mutation_p.G43R	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	207	R3H.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AGCTTATTTTGGATTGGATCA	0.378													27	39					0	0	0.001061	0	0
STAC	6769	broad.mit.edu	37	3	36545950	36545950	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:36545950G>A	uc003cgh.1	+	7	870	c.831_splice	c.e7+1	p.Q277_splice	STAC_uc010hgd.1_Splice_Site|STAC_uc011aya.1_Splice_Site_p.Q216_splice	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain						intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						AAACCACCAGGTATTTATGGA	0.313													15	22					0	0	0.003163	0	0
TRANK1	9881	broad.mit.edu	37	3	36872703	36872703	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:36872703C>A	uc003cgj.2	-	12	6891	c.6589G>T	c.(6589-6591)GAG>TAG	p.E2197*		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2747					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GCTGCCCCCTCAAACGCTTTG	0.547													25	29					2.21704e-12	3.84028e-12	0.002780	1	0
TRANK1	9881	broad.mit.edu	37	3	36873995	36873995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:36873995C>T	uc003cgj.2	-	12	5599	c.5297G>A	c.(5296-5298)AGG>AAG	p.R1766K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2316	Potential.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTTGAGTTCCCTGTTGTAGTT	0.512													39	46					0	0	0.002522	0	0
TRANK1	9881	broad.mit.edu	37	3	36875010	36875010	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:36875010G>A	uc003cgj.2	-	12	4584	c.4282C>T	c.(4282-4284)CAA>TAA	p.Q1428*		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1978					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGGCCAGTTTGATAGCAGATA	0.537													9	15					0	0	0.000978	0	0
TRANK1	9881	broad.mit.edu	37	3	36880178	36880178	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:36880178A>T	uc003cgj.2	-	9	3830	c.3528T>A	c.(3526-3528)GGT>GGA	p.G1176G		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1726	TPR 3.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TCTCAAATGCACCTCCTTTCT	0.473													7	9					0	0	0.003080	0	0
TRANK1	9881	broad.mit.edu	37	3	36884166	36884166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:36884166G>A	uc003cgj.2	-	8	3747	c.3445C>T	c.(3445-3447)CCT>TCT	p.P1149S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1699	TPR 3.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CACTCCGCAGGAGTTGAGGTC	0.458													14	23					0	0	0.001855	0	0
TRANK1	9881	broad.mit.edu	37	3	36897005	36897005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:36897005G>A	uc003cgj.2	-	3	2728	c.2426C>T	c.(2425-2427)TCC>TTC	p.S809F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1359					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACCTTTCTGGGACCTGATTTG	0.473													49	74					0	0	0.003610	0	0
TRANK1	9881	broad.mit.edu	37	3	36897069	36897069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:36897069G>A	uc003cgj.2	-	3	2664	c.2362C>T	c.(2362-2364)CCC>TCC	p.P788S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1338					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTGAAATTGGGGCACCGTTTC	0.428													42	60					0	0	0.003610	0	0
VILL	50853	broad.mit.edu	37	3	38042995	38042995	+	Missense_Mutation	SNP	C	T	T	rs145696544		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38042995C>T	uc003chj.2	+	12	1517	c.1231C>T	c.(1231-1233)CAT>TAT	p.H411Y	VILL_uc003chl.2_Missense_Mutation_p.H411Y|VILL_uc010hgu.2_Missense_Mutation_p.H241Y	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	411	Gelsolin-like 4.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		CCCCAAGCGTCATGGACAGCT	0.592													23	34					0	0	0.001882	0	0
VILL	50853	broad.mit.edu	37	3	38044760	38044760	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38044760C>T	uc003chj.2	+	15	2047	c.1761C>T	c.(1759-1761)TTC>TTT	p.F587F	VILL_uc003chl.2_Silent_p.F587F	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	587					actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		CTCCCCACTTCTGGGAGGCCC	0.522											OREG0015475	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	9					0	0	0.004990	0	0
DLEC1	9940	broad.mit.edu	37	3	38135209	38135209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38135209G>A	uc003cho.1	+	12	1891	c.1870G>A	c.(1870-1872)GAA>AAA	p.E624K	DLEC1_uc003chp.1_Missense_Mutation_p.E624K|DLEC1_uc010hgv.1_Missense_Mutation_p.E624K|DLEC1_uc003chr.1_5'UTR|DLEC1_uc010hgx.1_5'Flank|DLEC1_uc003chq.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	624					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		ATTTGAGCCTGAAAACCTTCG	0.483													37	49					0	0	0.003755	0	0
XYLB	9942	broad.mit.edu	37	3	38438647	38438647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38438647C>T	uc003cic.2	+	17	1544	c.1435C>T	c.(1435-1437)CAT>TAT	p.H479Y	XYLB_uc011ayp.1_Missense_Mutation_p.H342Y|XYLB_uc003cid.1_Missense_Mutation_p.H401Y	NM_005108	NP_005099	O75191	XYLB_HUMAN	xylulokinase	479					D-xylose metabolic process|generation of precursor metabolites and energy|xylulose catabolic process		ATP binding|xylulokinase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.00372)|Kidney(284;0.00405)		CCGAGCTTTTCATGGTAGGTT	0.537													14	26					0	0	0.003163	0	0
SCN5A	6331	broad.mit.edu	37	3	38597962	38597962	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38597962G>A	uc003cio.2	-	25	4601	c.4407C>T	c.(4405-4407)ATC>ATT	p.I1469I	SCN5A_uc003cin.2_Silent_p.I1468I|SCN5A_uc003cil.3_Silent_p.I1469I|SCN5A_uc010hhi.2_Silent_p.I1451I|SCN5A_uc010hhk.2_Silent_p.I1468I|SCN5A_uc011ayr.1_Silent_p.I1415I|SCN5A_uc010hhj.1_Silent_p.I1061I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1469	Helical; Name=S6 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AGTTGTCAATGATGACACCAA	0.493													4	8					0	0	0.000602	0	0
SCN5A	6331	broad.mit.edu	37	3	38616821	38616821	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38616821G>A	uc003cio.2	-	20	3827	c.3633C>T	c.(3631-3633)ATC>ATT	p.I1211I	SCN5A_uc003cin.2_Silent_p.I1210I|SCN5A_uc003cil.3_Silent_p.I1211I|SCN5A_uc010hhi.2_Silent_p.I1211I|SCN5A_uc010hhk.2_Silent_p.I1210I|SCN5A_uc011ayr.1_Silent_p.I1157I|SCN5A_uc010hhj.1_Silent_p.I821I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1211	Helical; Name=S1 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCATGAAGATGATGAATGTCT	0.617													8	5					0	0	0.000978	0	0
SCN5A	6331	broad.mit.edu	37	3	38674533	38674533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38674533G>A	uc003cio.2	-	2	460	c.266C>T	c.(265-267)ACC>ATC	p.T89I	SCN5A_uc003cin.2_Missense_Mutation_p.T89I|SCN5A_uc003cil.3_Missense_Mutation_p.T89I|SCN5A_uc010hhi.2_Missense_Mutation_p.T89I|SCN5A_uc010hhk.2_Missense_Mutation_p.T89I|SCN5A_uc011ayr.1_Missense_Mutation_p.T89I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	89					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CACCTTTTGGGTGCTATAGAA	0.592													13	29					0	0	0.000958	0	0
SCN10A	6336	broad.mit.edu	37	3	38738959	38738959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38738959G>A	uc003ciq.2	-	27	5752	c.5752C>T	c.(5752-5754)CCA>TCA	p.P1918S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1918					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TAGGACGGTGGGAATGATGTG	0.448													35	75					0	0	0.002222	0	0
SCN10A	6336	broad.mit.edu	37	3	38739607	38739607	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38739607A>C	uc003ciq.2	-	27	5104	c.5104T>G	c.(5104-5106)TTC>GTC	p.F1702V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1702	IV.|Helical; Name=S6 of repeat IV; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TAGGTGGTGAAGAAGATGATG	0.552													24	32					0	0	0.002780	0	0
SCN10A	6336	broad.mit.edu	37	3	38755538	38755538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38755538C>T	uc003ciq.2	-	21	3715	c.3715G>A	c.(3715-3717)GAA>AAA	p.E1239K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1239	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCAGAATATTCCAGAATCTTC	0.522													35	52					0	0	0.001951	0	0
SCN10A	6336	broad.mit.edu	37	3	38768376	38768376	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38768376G>A	uc003ciq.2	-	16	2808	c.2808C>T	c.(2806-2808)TGC>TGT	p.C936C		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	936					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGGGGAATGGGCAGGACCTGC	0.597													26	42					0	0	0.005443	0	0
SCN10A	6336	broad.mit.edu	37	3	38768433	38768433	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38768433G>A	uc003ciq.2	-	16	2751	c.2751C>T	c.(2749-2751)ATC>ATT	p.I917I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	917					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CAAAGACCTGGATCCGTGCCA	0.582													39	59					0	0	0.002222	0	0
SCN10A	6336	broad.mit.edu	37	3	38797420	38797420	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38797420G>A	uc003ciq.2	-	10	1320	c.1320C>T	c.(1318-1320)ACC>ACT	p.T440T		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	440					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGTGGAGAGAGGTTGTGTCAA	0.483													52	46					0	0	0.003610	0	0
SCN11A	11280	broad.mit.edu	37	3	38892168	38892168	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38892168G>A	uc011ays.1	-	25	4330	c.4131C>T	c.(4129-4131)ATC>ATT	p.I1377I	SCN11A_uc003cis.1_Silent_p.I42I	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1377	Helical; Name=S1 of repeat IV; (By similarity).|IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCATGTTTAGGATAATGAGAC	0.378													37	45					0	0	0.005524	0	0
SCN11A	11280	broad.mit.edu	37	3	38913691	38913691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38913691C>T	uc011ays.1	-	20	3687	c.3488G>A	c.(3487-3489)GGA>GAA	p.G1163E		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1163	III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TACCTTCATTCCTTCAAACTG	0.453													51	85					0	0	0.003610	0	0
SCN11A	11280	broad.mit.edu	37	3	38936397	38936397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38936397C>T	uc011ays.1	-	15	2661	c.2462G>A	c.(2461-2463)GGA>GAA	p.G821E	SCN11A_uc010hhn.1_5'UTR	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	821					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TTCTAAGTTTCCATTTCTTTC	0.448													12	29					0	0	0.003163	0	0
SCN11A	11280	broad.mit.edu	37	3	38945566	38945566	+	Silent	SNP	G	A	A	rs149552611	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:38945566G>A	uc011ays.1	-	12	1831	c.1632C>T	c.(1630-1632)CTC>CTT	p.L544L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	544					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTCCACAAGGGAGACAAGGCT	0.507													15	17					0	0	0.004007	0	0
XIRP1	165904	broad.mit.edu	37	3	39230046	39230046	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:39230046C>T	uc003cjk.1	-	2	1112	c.891G>A	c.(889-891)GAG>GAA	p.E297E	XIRP1_uc003cji.2_Silent_p.E297E|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	297							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GGGCCCCCTCCTCCAGGGAAA	0.642													13	16					0	0	0.001855	0	0
XIRP1	165904	broad.mit.edu	37	3	39230253	39230253	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:39230253C>T	uc003cjk.1	-	2	905	c.684G>A	c.(682-684)GTG>GTA	p.V228V	XIRP1_uc003cji.2_Silent_p.V228V|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	228	Xin 5.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CTGTCTTTTTCACATCACCCT	0.632													20	57					0	0	0.001523	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307132	39307132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:39307132G>A	uc003cjl.2	-	2	961	c.869C>T	c.(868-870)CCT>CTT	p.P290L		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	290	Helical; Name=7; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		ATAGATGAGAGGATTCAGGCA	0.498													39	62					0	0	0.001287	0	0
ULK4	54986	broad.mit.edu	37	3	41795885	41795885	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:41795885G>A	uc003ckv.3	-	22	2490	c.2289C>T	c.(2287-2289)AAC>AAT	p.N763N		NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	763							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		ACATCTCACGGTTATAAATCA	0.393													53	81					0	0	0.003610	0	0
ULK4	54986	broad.mit.edu	37	3	41841661	41841661	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:41841661T>C	uc003ckv.3	-	20	2174	c.1973A>G	c.(1972-1974)CAC>CGC	p.H658R	ULK4_uc003ckw.2_Missense_Mutation_p.H658R	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	658							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		AGCAGTGGAGTGTCTGAATAG	0.403													34	64					0	0	0.003755	0	0
ULK4	54986	broad.mit.edu	37	3	41954347	41954347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:41954347G>A	uc003ckv.3	-	9	1049	c.848C>T	c.(847-849)GCT>GTT	p.A283V	ULK4_uc003ckw.2_Missense_Mutation_p.A283V|ULK4_uc003ckx.1_Missense_Mutation_p.A283V	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	283							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		TCCAGCAAAAGCTTTCTTCCA	0.368													29	33					0	0	0.003755	0	0
CCK	885	broad.mit.edu	37	3	42299635	42299635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:42299635C>T	uc003clc.1	-	3	512	c.303G>A	c.(301-303)ATG>ATA	p.M101I	CCK_uc003cld.1_Missense_Mutation_p.M101I	NM_000729	NP_000720	P06307	CCKN_HUMAN	cholecystokinin preproprotein	101					axonogenesis|eating behavior|neuron migration		neuropeptide hormone activity			central_nervous_system(1)	1		Ovarian(412;0.0728)		KIRC - Kidney renal clear cell carcinoma(284;0.219)		GGCCAAAATCCATCCAGCCCA	0.582													19	27					0	0	0.000958	0	0
HHATL	57467	broad.mit.edu	37	3	42738351	42738351	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:42738351G>A	uc003clw.2	-	10	1176	c.1029C>T	c.(1027-1029)ATC>ATT	p.I343I	HHATL_uc003clx.2_Silent_p.I343I	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	343					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		GCCAGTCGTTGATGCCACGGT	0.433													4	8					0	0	0.000248	0	0
ZNF445	353274	broad.mit.edu	37	3	44492900	44492900	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:44492900G>A	uc003cnf.2	-	4	852	c.504C>T	c.(502-504)TCC>TCT	p.S168S	ZNF445_uc011azv.1_Silent_p.S168S|ZNF445_uc011azw.1_Silent_p.S168S	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	168					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		GTGAAGCAAGGGACCATATCT	0.572													30	50					0	0	0.002445	0	0
ZNF501	115560	broad.mit.edu	37	3	44776715	44776715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:44776715C>T	uc003cnu.1	+	3	1203	c.802C>T	c.(802-804)CAT>TAT	p.H268Y	ZNF501_uc003cnv.1_Silent_p.F211F	NM_145044	NP_659481	Q96CX3	ZN501_HUMAN	zinc finger protein 501	268	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00843)|KIRC - Kidney renal clear cell carcinoma(197;0.0463)|Kidney(197;0.0579)		TCAGAGGCTTCATGCTGGAGA	0.383													25	27					0	0	0.005443	0	0
KIF15	56992	broad.mit.edu	37	3	44844348	44844348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:44844348C>T	uc003cnx.3	+	14	1701	c.1552C>T	c.(1552-1554)CAT>TAT	p.H518Y	KIF15_uc010hiq.2_Missense_Mutation_p.H421Y|KIF15_uc003cny.1_Missense_Mutation_p.H153Y	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	518	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		TATGGAAAATCATTCCCTCAG	0.378													36	43					0	0	0.001287	0	0
KIF15	56992	broad.mit.edu	37	3	44893303	44893303	+	Silent	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:44893303T>G	uc003cnx.3	+	33	3980	c.3831T>G	c.(3829-3831)CTT>CTG	p.L1277L	KIF15_uc010hiq.2_Silent_p.L1180L|KIF15_uc010hir.2_Silent_p.L325L	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	1277	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		AAAGTGCCCTTTACAACAAAG	0.368													63	86					0	0	0.003610	0	0
LARS2	23395	broad.mit.edu	37	3	45500238	45500238	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:45500238C>T	uc003cop.1	+	8	795	c.610C>T	c.(610-612)CTG>TTG	p.L204L	LARS2_uc010hit.1_Silent_p.L161L	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	204					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	TATACAGGCCCTGGTTAACTG	0.348													13	22					0	0	0.002450	0	0
SLC6A20	54716	broad.mit.edu	37	3	45812838	45812838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:45812838G>A	uc011bai.1	-	6	930	c.806C>T	c.(805-807)TCC>TTC	p.S269F	SLC6A20_uc003cow.2_5'UTR|SLC6A20_uc011baj.1_Missense_Mutation_p.S232F	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	269	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		GCAGTTGTTGGATGGCTCATT	0.552													42	51					0	0	0.003610	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817373	45817373	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:45817373G>A	uc011bai.1	-	4	586	c.462C>T	c.(460-462)CTC>CTT	p.L154L	SLC6A20_uc011baj.1_Silent_p.L154L	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	154	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		GCGAGATATTGAGGGTTTTCC	0.607													27	45					0	0	0.001271	0	0
CCR9	10803	broad.mit.edu	37	3	45942730	45942730	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:45942730G>A	uc003coz.1	+	3	607	c.450G>A	c.(448-450)CAG>CAA	p.Q150Q	LZTFL1_uc003coy.1_Intron|LZTFL1_uc011bak.1_Intron|CCR9_uc010hiv.1_Silent_p.Q138Q|CCR9_uc003cpa.1_Silent_p.Q138Q	NM_031200	NP_112477	P51686	CCR9_HUMAN	chemokine (C-C motif) receptor 9 isoform A	150	Cytoplasmic (Potential).				cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane				ovary(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00118)|KIRC - Kidney renal clear cell carcinoma(197;0.0182)|Kidney(197;0.0214)		CCATTGCCCAGGCCATGAGAG	0.478													31	33					0	0	0.002445	0	0
CCR9	10803	broad.mit.edu	37	3	45942944	45942944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:45942944G>A	uc003coz.1	+	3	821	c.664G>A	c.(664-666)GGG>AGG	p.G222R	LZTFL1_uc003coy.1_Intron|LZTFL1_uc011bak.1_Intron|CCR9_uc010hiv.1_Missense_Mutation_p.G210R|CCR9_uc003cpa.1_Missense_Mutation_p.G210R	NM_031200	NP_112477	P51686	CCR9_HUMAN	chemokine (C-C motif) receptor 9 isoform A	222	Helical; Name=5; (Potential).				cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane				ovary(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00118)|KIRC - Kidney renal clear cell carcinoma(197;0.0182)|Kidney(197;0.0214)		GGTCATTCTGGGGTTCTTCCT	0.483													38	35					0	0	0.001485	0	0
CCR1	1230	broad.mit.edu	37	3	46244938	46244938	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:46244938G>A	uc003cph.1	-	2	938	c.867C>T	c.(865-867)ATC>ATT	p.I289I	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	289	Helical; Name=7; (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GCGTGTAGGCGATCACCTCCG	0.522													7	13					0	0	0.001984	0	0
CCRL2	9034	broad.mit.edu	37	3	46450373	46450373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:46450373C>T	uc003cpp.3	+	2	1088	c.803C>T	c.(802-804)TCC>TTC	p.S268F	CCRL2_uc010hjg.2_Missense_Mutation_p.S280F|CCRL2_uc010hjf.2_Missense_Mutation_p.S268F	NM_003965	NP_003956	O00421	CCRL2_HUMAN	chemokine (C-C motif) receptor-like 2 isoform 1	268	Extracellular (Potential).				chemotaxis|inflammatory response	integral to plasma membrane	CCR chemokine receptor binding|chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)		GAACACTTCTCCCTGAGTGAC	0.463													96	150					0	0	0.003610	0	0
LTF	4057	broad.mit.edu	37	3	46491348	46491348	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:46491348C>T	uc003cpq.2	-	8	1091	c.1053G>A	c.(1051-1053)AGG>AGA	p.R351R	LTF_uc003fzr.2_Silent_p.R307R|LTF_uc010hjh.2_Silent_p.R351R|LTF_uc003cpr.2_Silent_p.R338R	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	351	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	ACTCACTTTTCCTCAAGTTCT	0.567													10	13					0	0	0.000978	0	0
ALS2CL	259173	broad.mit.edu	37	3	46716097	46716097	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:46716097G>A	uc003cqa.1	-	21	2578	c.2388C>T	c.(2386-2388)CTC>CTT	p.L796L	ALS2CL_uc003cpx.1_Silent_p.L143L|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Silent_p.L311L|ALS2CL_uc003cqb.1_Silent_p.L796L|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	796	VPS9.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		TATCAGGAAAGAGGCTCAAGT	0.507													39	73					0	0	0.001485	0	0
ALS2CL	259173	broad.mit.edu	37	3	46724752	46724752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:46724752G>A	uc003cqa.1	-	10	1167	c.977C>T	c.(976-978)CCC>CTC	p.P326L	ALS2CL_uc003cpz.1_5'Flank|ALS2CL_uc003cqb.1_Missense_Mutation_p.P326L|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	326					endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		CCCCAGCACGGGGAAGTCCTT	0.662													4	6					0	0	0.000248	0	0
PTH1R	5745	broad.mit.edu	37	3	46943285	46943285	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:46943285C>T	uc003cqm.2	+	13	1349	c.1146C>T	c.(1144-1146)GTC>GTT	p.V382V	PTH1R_uc003cqn.2_Silent_p.V382V	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	382	Helical; Name=5; (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						TCAATATCGTCCGGGTGCTCG	0.667									Ollier_disease_/_Maffuci_syndrome				13	24					0	0	0.003163	0	0
PTH1R	5745	broad.mit.edu	37	3	46944924	46944924	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:46944924C>T	uc003cqm.2	+	16	1763	c.1560C>T	c.(1558-1560)CCC>CCT	p.P520P	PTH1R_uc003cqn.2_Silent_p.P520P	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	520	Cytoplasmic (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						CCCTCAGCCCCCGCCTACTGC	0.682									Ollier_disease_/_Maffuci_syndrome				13	18					0	0	0.001855	0	0
KLHL18	23276	broad.mit.edu	37	3	47385128	47385128	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:47385128C>T	uc003crd.2	+	10	1548	c.1422C>T	c.(1420-1422)TCC>TCT	p.S474S	KLHL18_uc011bav.1_Silent_p.S362S	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	474	Kelch 4.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		GAGCCGCCTCCCTGGGGAGCA	0.617													13	30					0	0	0.001368	0	0
MAP4	4134	broad.mit.edu	37	3	47908795	47908795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:47908795G>A	uc003csb.2	-	15	3533	c.3007C>T	c.(3007-3009)CAT>TAT	p.H1003Y	MAP4_uc003csc.3_Missense_Mutation_p.H1003Y|MAP4_uc003crw.2_Missense_Mutation_p.H82Y|MAP4_uc003crx.2_Intron|MAP4_uc011bbe.1_Missense_Mutation_p.H716Y|MAP4_uc003cry.2_Missense_Mutation_p.H738Y|MAP4_uc003csa.3_Intron|MAP4_uc003crz.3_RNA|MAP4_uc003csd.2_Missense_Mutation_p.H723Y	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	1003	Tau/MAP 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		GACTGAATATGGCTGTAGCTC	0.438													29	65					0	0	0.004878	0	0
PLXNB1	5364	broad.mit.edu	37	3	48457565	48457565	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:48457565G>A	uc003csw.2	-	18	3762	c.3492C>T	c.(3490-3492)GTC>GTT	p.V1164V	PLXNB1_uc003cst.2_5'Flank|PLXNB1_uc003csu.2_Silent_p.V981V|PLXNB1_uc003csx.2_Silent_p.V1164V|PLXNB1_uc010hjx.1_RNA|PLXNB1_uc003csy.1_5'UTR	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1164	IPT/TIG 2.|Extracellular (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGATGGAATGGACCTTCGGAT	0.642													7	3					0	0	0.004482	0	0
COL7A1	1294	broad.mit.edu	37	3	48610636	48610636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:48610636G>A	uc003ctz.2	-	84	6686	c.6685C>T	c.(6685-6687)CCT>TCT	p.P2229S		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2229	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGGGTCCAGGAAGTCCCACA	0.602													7	9					0	0	0.001984	0	0
COL7A1	1294	broad.mit.edu	37	3	48613867	48613867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:48613867C>T	uc003ctz.2	-	69	5739	c.5738G>A	c.(5737-5739)GGT>GAT	p.G1913D		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1913	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCCACGGTCACCCTGAAAACA	0.627													5	8					0	0	0.001984	0	0
COL7A1	1294	broad.mit.edu	37	3	48619044	48619044	+	Missense_Mutation	SNP	G	A	A	rs146418495		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:48619044G>A	uc003ctz.2	-	49	4745	c.4744C>T	c.(4744-4746)CCT>TCT	p.P1582S	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1582	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGTCTCCAGGAAGAACCAAG	0.567													18	29					0	0	0.000958	0	0
COL7A1	1294	broad.mit.edu	37	3	48623767	48623767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:48623767G>A	uc003ctz.2	-	26	3549	c.3548C>T	c.(3547-3549)TCT>TTT	p.S1183F		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1183	Nonhelical region (NC1).|VWFA 2.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTCCTTACCAGAAGCCTGGGC	0.587													56	64					0	0	0.003610	0	0
CELSR3	1951	broad.mit.edu	37	3	48667391	48667391	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:48667391G>A	uc003cuf.1	-	49	11658	c.11658C>T	c.(11656-11658)TTC>TTT	p.F3886F	SLC26A6_uc003cug.2_Silent_p.F460F|SLC26A6_uc003cuh.2_Silent_p.F481F|SLC26A6_uc010hke.2_Silent_p.F332F|SLC26A6_uc003cuk.2_Silent_p.F374F|SLC26A6_uc003cui.2_Silent_p.F481F|SLC26A6_uc003cuj.2_Silent_p.F481F|SLC26A6_uc011bbp.1_Silent_p.F445F	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGGTGGCCGTGAAGGTCACCA	0.632													11	29					0	0	0.000978	0	0
USP19	10869	broad.mit.edu	37	3	49149062	49149063	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49149062_49149063GA>AC	uc003cwd.1	-	20	2939_2940	c.2778_2779TC>GT	c.(2776-2781)CTTCCC>CTGTCC	p.P927S	USP19_uc003cwa.2_Missense_Mutation_p.P735S|USP19_uc003cvz.3_Missense_Mutation_p.P1030S|USP19_uc011bcg.1_Missense_Mutation_p.P1018S|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.P685S|USP19_uc011bch.1_Missense_Mutation_p.P1028S	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	927	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CACACCCGGGGAAGCCCTGTGT	0.644													10	22					0	0	0.004672	0	0
USP19	10869	broad.mit.edu	37	3	49150050	49150050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49150050G>A	uc003cwd.1	-	17	2370	c.2209C>T	c.(2209-2211)CGT>TGT	p.R737C	USP19_uc003cwa.2_Missense_Mutation_p.R545C|USP19_uc003cvz.3_Missense_Mutation_p.R840C|USP19_uc011bcg.1_Missense_Mutation_p.R828C|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.R495C|USP19_uc011bch.1_Missense_Mutation_p.R838C	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	737	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGATGAAAACGATTCTTAATT	0.522													9	25					0	0	0.000978	0	0
KLHDC8B	200942	broad.mit.edu	37	3	49211794	49211794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49211794G>A	uc003cwh.2	+	3	684	c.499G>A	c.(499-501)GGG>AGG	p.G167R	KLHDC8B_uc003cwi.1_Missense_Mutation_p.G40R	NM_173546	NP_775817	Q8IXV7	KLD8B_HUMAN	kelch domain containing 8B	167	Kelch 4.					cytoplasm					0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00217)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		ACCCTGCTATGGGGCCTCCAC	0.612													14	28					0	0	0.000958	0	0
BSN	8927	broad.mit.edu	37	3	49689666	49689667	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49689666_49689667CC>TT	uc003cxe.3	+	5	2791_2792	c.2677_2678CC>TT	c.(2677-2679)CCC>TTC	p.P893F		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	893					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGCAGCACTGCCCAAGAGGCGC	0.658													4	10					0	0	0.004672	0	0
BSN	8927	broad.mit.edu	37	3	49690463	49690463	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49690463C>T	uc003cxe.3	+	5	3588	c.3474C>T	c.(3472-3474)TTC>TTT	p.F1158F		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1158					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TGCCCACCTTCATGTCCCTCT	0.597													14	16					0	0	0.002450	0	0
BSN	8927	broad.mit.edu	37	3	49694020	49694020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49694020G>A	uc003cxe.3	+	5	7145	c.7031G>A	c.(7030-7032)GGT>GAT	p.G2344D		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2344					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GCTCCTGGGGGTGGCAGTGGG	0.652													11	12					0	0	0.001855	0	0
BSN	8927	broad.mit.edu	37	3	49699923	49699923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49699923C>T	uc003cxe.3	+	6	10759	c.10645C>T	c.(10645-10647)CGG>TGG	p.R3549W		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3549					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGACGGACCTCGGGCCCACGC	0.617													19	30					0	0	0.001216	0	0
IP6K1	9807	broad.mit.edu	37	3	49785288	49785288	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49785288G>A	uc003cxm.1	-	2	501	c.186C>T	c.(184-186)CTC>CTT	p.L62L	IP6K1_uc003cxn.1_Intron|IP6K1_uc011bcv.1_Intron|IP6K1_uc003cxo.2_Silent_p.L62L	NM_153273	NP_695005	Q92551	IP6K1_HUMAN	inositol hexakisphosphate kinase 1 isoform 1	62					phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						TTTCGGGAGGGAGGGACTCGT	0.532													8	17					0	0	0.000443	0	0
CAMKV	79012	broad.mit.edu	37	3	49898695	49898695	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:49898695C>T	uc003cxt.1	-	6	673	c.480G>A	c.(478-480)TCG>TCA	p.S160S	CAMKV_uc011bcy.1_Silent_p.S85S|CAMKV_uc003cxv.1_Silent_p.S160S|CAMKV_uc003cxw.1_5'UTR|CAMKV_uc003cxx.1_5'UTR|CAMKV_uc003cxu.2_Silent_p.S160S|CAMKV_uc011bcz.1_Silent_p.S123S|CAMKV_uc011bda.1_Silent_p.S117S|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	160	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		TGACAATCTTCGAGTTCTTCA	0.542													11	24					0	0	0.001368	0	0
DOCK3	1795	broad.mit.edu	37	3	51266196	51266196	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:51266196C>T	uc011bds.1	+	18	1775	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	584	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCCTCATCTTCCAGCGCAGCA	0.507													20	32					0	0	0.000958	0	0
DOCK3	1795	broad.mit.edu	37	3	51349990	51349990	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:51349990G>A	uc011bds.1	+	30	3200	c.3177G>A	c.(3175-3177)AGG>AGA	p.R1059R		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1059						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAGCCAAAAGGAAGAAGATTC	0.398													21	39					0	0	0.002299	0	0
DOCK3	1795	broad.mit.edu	37	3	51393678	51393678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:51393678G>A	uc011bds.1	+	42	4431	c.4408G>A	c.(4408-4410)GAA>AAA	p.E1470K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1470	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAAGGAGAATGAATTCAAGGT	0.488													18	15					0	0	0.000743	0	0
IQCF2	389123	broad.mit.edu	37	3	51895942	51895942	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:51895942G>A	uc003dbt.1	+	2	125	c.87G>A	c.(85-87)CAG>CAA	p.Q29Q	IQCF1_uc003dbq.3_Intron|IQCF2_uc003dbu.1_RNA	NM_203424	NP_982248	Q8IXL9	IQCF2_HUMAN	IQ motif containing F2	29											0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AGACATTGCAGAAGAAGAAAC	0.338													23	25					0	0	0.003954	0	0
IQCF1	132141	broad.mit.edu	37	3	51929152	51929152	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:51929152C>A	uc003dbv.2	-	4	470	c.372G>T	c.(370-372)AAG>AAT	p.K124N	IQCF1_uc003dbq.3_Intron	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1	124	IQ 2.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CTGCCCACTCCTTCCGGGAGA	0.597													13	24					7.93312e-07	1.36886e-06	0.002450	1	0
SEMA3G	56920	broad.mit.edu	37	3	52476763	52476763	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:52476763C>T	uc003dea.1	-	2	276	c.276G>A	c.(274-276)GAG>GAA	p.E92E		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	92	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		TCCAGCTCACCTCCCGGGGAT	0.617													15	19					0	0	0.004007	0	0
STAB1	23166	broad.mit.edu	37	3	52539154	52539154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:52539154C>T	uc003dej.2	+	13	1587	c.1513C>T	c.(1513-1515)CCC>TCC	p.P505S	STAB1_uc003dei.1_Missense_Mutation_p.P505S	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	505	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CCCTGGGGATCCCAAGGTGAG	0.612													22	34					0	0	0.001061	0	0
STAB1	23166	broad.mit.edu	37	3	52546974	52546974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:52546974G>A	uc003dej.2	+	29	3232	c.3158G>A	c.(3157-3159)AGG>AAG	p.R1053K		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1053	FAS1 3.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		AACCTGGTCAGGTGGGGCCGC	0.687													6	10					0	0	0.001168	0	0
TKT	7086	broad.mit.edu	37	3	53264514	53264514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:53264514G>A	uc003dgo.2	-	8	1176	c.1066C>T	c.(1066-1068)CCG>TCG	p.P356S	TKT_uc003dgp.2_5'UTR|TKT_uc011beo.1_Missense_Mutation_p.P309S|TKT_uc003dgq.2_Missense_Mutation_p.P356S|TKT_uc011beq.1_Missense_Mutation_p.P364S|TKT_uc011ber.1_Missense_Mutation_p.P158S|TKT_uc011bep.1_Missense_Mutation_p.P273S	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	356					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	AAGCGGTCCGGGTGCTCCTTT	0.602													9	21					0	0	0.000443	0	0
CACNA1D	776	broad.mit.edu	37	3	53769521	53769521	+	Silent	SNP	C	T	T	rs147601660	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:53769521C>T	uc003dgv.3	+	20	2905	c.2742C>T	c.(2740-2742)TTC>TTT	p.F914F	CACNA1D_uc003dgu.3_Silent_p.F934F|CACNA1D_uc003dgy.3_Silent_p.F914F|CACNA1D_uc003dgw.3_Silent_p.F581F|CACNA1D_uc003dgx.1_Silent_p.F62F	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	914	Extracellular (Potential).|III.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GCCACTCCTTCCGGAACACGG	0.617													14	16					0	0	0.002450	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54537588	54537588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:54537588G>A	uc003dhf.2	+	5	499	c.451G>A	c.(451-453)GAA>AAA	p.E151K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E57K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	151	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GCTGGGAAAGGAATTCATCTT	0.373													34	65					0	0	0.002836	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54905632	54905632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:54905632G>A	uc003dhf.2	+	18	1741	c.1693G>A	c.(1693-1695)GAA>AAA	p.E565K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E471K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.E299K	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	565	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GGTGGAGTGGGAAGACCGAGA	0.483													34	29					0	0	0.001287	0	0
LRTM1	57408	broad.mit.edu	37	3	54958979	54958979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:54958979G>A	uc003dhl.2	-	2	405	c.271C>T	c.(271-273)CCT>TCT	p.P91S	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	91	Extracellular (Potential).|LRR 2.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AAAGCTCCAGGGGCCAGATTT	0.453													19	24					0	0	0.001216	0	0
LRTM1	57408	broad.mit.edu	37	3	54959224	54959224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:54959224G>A	uc003dhl.2	-	2	160	c.26C>T	c.(25-27)TCC>TTC	p.S9F	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	9						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AATCACACTGGAAAACAGGAG	0.478													12	19					0	0	0.001855	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55052318	55052318	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:55052318G>A	uc003dhf.2	+	35	3009	c.2961G>A	c.(2959-2961)GGG>GGA	p.G987G	CACNA2D3_uc003dhg.1_Silent_p.G893G|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	987	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGACTACAGGGAATATTGCTT	0.507													6	11					0	0	0.001168	0	0
FLNB	2317	broad.mit.edu	37	3	58139106	58139106	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:58139106C>T	uc003djj.2	+	39	6537	c.6372C>T	c.(6370-6372)ATC>ATT	p.I2124I	FLNB_uc010hne.2_Silent_p.I2155I|FLNB_uc003djk.2_Silent_p.I2113I|FLNB_uc010hnf.2_Silent_p.I2100I|FLNB_uc003djl.2_Silent_p.I1944I|FLNB_uc003djm.2_Silent_p.I1931I|FLNB_uc010hng.1_RNA	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2124	Filamin 20.|Interaction with FLNA 1.|Interaction with the cytoplasmic tail of GP1BA.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TTTCAGAAATCAACAGCAGTG	0.592													18	22					0	0	0.001523	0	0
CADPS	8618	broad.mit.edu	37	3	62502278	62502278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:62502278C>T	uc003dll.2	-	15	2794	c.2434G>A	c.(2434-2436)GCT>ACT	p.A812T	CADPS_uc003dlk.1_Missense_Mutation_p.A316T|CADPS_uc003dlm.2_Missense_Mutation_p.A812T|CADPS_uc003dln.2_Missense_Mutation_p.A795T	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	812	Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		GAGAGAGTAGCTTTCAAAGCA	0.313													43	57					0	0	0.003610	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64532454	64532454	+	Silent	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:64532454T>G	uc003dmg.2	-	32	5076	c.5044A>C	c.(5044-5046)AGA>CGA	p.R1682R	ADAMTS9_uc011bfo.1_Silent_p.R1654R|ADAMTS9_uc011bfp.1_Silent_p.R593R	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1682	TSP type-1 15.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TTGCCAACTCTCCAGGTGGCC	0.552													74	137					0	0	0.003610	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64601033	64601033	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:64601033G>A	uc003dmg.2	-	21	3185	c.3153C>T	c.(3151-3153)TTC>TTT	p.F1051F	ADAMTS9_uc011bfo.1_Silent_p.F1023F|ADAMTS9_uc003dmh.1_Silent_p.F880F|ADAMTS9_uc003dmk.1_Silent_p.F1051F|ADAMTS9_uc011bfp.1_5'UTR	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1051					glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GTGGACAAGGGAACTCACTGC	0.458													164	224					0	0	0.003610	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64635398	64635398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:64635398G>A	uc003dmg.2	-	10	1552	c.1520C>T	c.(1519-1521)CCT>CTT	p.P507L	ADAMTS9_uc011bfo.1_Missense_Mutation_p.P479L|ADAMTS9_uc003dmh.1_Missense_Mutation_p.P336L|ADAMTS9_uc003dmk.1_Missense_Mutation_p.P507L	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	507					glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CAGTTGGACAGGCAAAGGGTA	0.473													158	247					0	0	0.003610	0	0
MAGI1	9223	broad.mit.edu	37	3	65365218	65365218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:65365218C>T	uc003dmn.2	-	17	3239	c.2713G>A	c.(2713-2715)GAG>AAG	p.E905K	MAGI1_uc003dmm.2_Missense_Mutation_p.E933K|MAGI1_uc003dmo.2_Missense_Mutation_p.E933K|MAGI1_uc003dmp.2_Missense_Mutation_p.E905K|MAGI1_uc003dmq.1_RNA|MAGI1_uc010hnx.1_Missense_Mutation_p.E216K	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	933					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		ACCTCGTTCTCGGTTTTGGGC	0.617													33	55					0	0	0.004289	0	0
MAGI1	9223	broad.mit.edu	37	3	65376826	65376826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:65376826C>T	uc003dmn.2	-	14	2933	c.2407G>A	c.(2407-2409)GAA>AAA	p.E803K	MAGI1_uc003dmm.2_Missense_Mutation_p.E803K|MAGI1_uc003dmo.2_Missense_Mutation_p.E803K|MAGI1_uc003dmp.2_Missense_Mutation_p.E803K|MAGI1_uc010hnx.1_Missense_Mutation_p.E86K	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	803					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CGTCGGTTTTCATACATGCTC	0.502													21	47					0	0	0.002299	0	0
LRIG1	26018	broad.mit.edu	37	3	66449435	66449435	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:66449435C>T	uc003dmx.2	-	10	1205	c.1191G>A	c.(1189-1191)GTG>GTA	p.V397V	LRIG1_uc011bfu.1_Silent_p.V17V|LRIG1_uc003dmw.2_Silent_p.V63V|LRIG1_uc010hnz.2_Intron|LRIG1_uc010hoa.2_Silent_p.V421V	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	397	Extracellular (Potential).|LRR 14.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		CTCTCTTAGCCACAGACTTGA	0.537													9	26					0	0	0.000443	0	0
LRIG1	26018	broad.mit.edu	37	3	66465358	66465358	+	Silent	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:66465358G>C	uc003dmx.2	-	5	647	c.633C>G	c.(631-633)CCC>CCG	p.P211P	LRIG1_uc010hnz.2_5'UTR|LRIG1_uc010hoa.2_Silent_p.P211P	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	211	Extracellular (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		GTGTCAGCCTGGGTAGCTTGA	0.493													3	87					0	0	0.000248	0	0
FRMD4B	23150	broad.mit.edu	37	3	69360444	69360444	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:69360444T>A	uc003dnv.2	-	3	583	c.293A>T	c.(292-294)GAG>GTG	p.E98V	FRMD4B_uc003dnw.2_Intron|FRMD4B_uc003dnx.1_Missense_Mutation_p.E44V|FRMD4B_uc003dny.2_Missense_Mutation_p.E98V	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B	98	FERM.					cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		TCCAAAATACTCCTTTTCTTT	0.368													16	19					0	0	0.004990	0	0
FOXP1	27086	broad.mit.edu	37	3	71247353	71247353	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:71247353C>T	uc003dol.2	-	2	503	c.180G>A	c.(178-180)CAG>CAA	p.Q60Q	FOXP1_uc003dom.2_Silent_p.Q60Q|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.Q60Q|FOXP1_uc003dop.2_Silent_p.Q60Q|FOXP1_uc003doq.1_Silent_p.Q60Q|FOXP1_uc003dos.2_Silent_p.Q60Q	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	60	Gln-rich.	Breakpoint for translocation to form PAX5-FOXP1.			cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		AGCCCAGTACCTGTTGCTGCT	0.592			T	PAX5	ALL								13	39					0	0	0.001855	0	0
ROBO2	6092	broad.mit.edu	37	3	77666791	77666791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:77666791C>T	uc003dpy.3	+	22	4064	c.3421C>T	c.(3421-3423)CCT>TCT	p.P1141S	ROBO2_uc003dpz.2_Missense_Mutation_p.P1145S|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.P1145S|ROBO2_uc003dqa.2_Missense_Mutation_p.P268S	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1141	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GGCTTCTTCTCCTGCTATCTC	0.507													20	36					0	0	0.002299	0	0
ROBO1	6091	broad.mit.edu	37	3	78667144	78667144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:78667144G>A	uc003dqe.2	-	27	4131	c.3923C>T	c.(3922-3924)CCA>CTA	p.P1308L	ROBO1_uc003dqb.2_Missense_Mutation_p.P1269L|ROBO1_uc003dqc.2_Missense_Mutation_p.P1208L|ROBO1_uc003dqd.2_Missense_Mutation_p.P1263L|ROBO1_uc010hoh.2_Missense_Mutation_p.P500L|ROBO1_uc011bgl.1_Missense_Mutation_p.P880L	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1308	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		ATAGGTATGTGGAGGGGAGAT	0.502													18	40					0	0	0.001882	0	0
ROBO1	6091	broad.mit.edu	37	3	78734984	78734984	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:78734984G>A	uc003dqe.2	-	10	1462	c.1254C>T	c.(1252-1254)GTC>GTT	p.V418V	ROBO1_uc003dqb.2_Silent_p.V379V|ROBO1_uc003dqc.2_Silent_p.V382V|ROBO1_uc003dqd.2_Silent_p.V382V|ROBO1_uc010hoh.2_5'UTR|ROBO1_uc003dqf.1_Silent_p.V97V	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	418	Extracellular (Potential).|Ig-like C2-type 4.				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CAGATCGCTGGACATTAGTAA	0.408													17	11					0	0	0.004007	0	0
ROBO1	6091	broad.mit.edu	37	3	79639009	79639009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:79639009G>A	uc003dqe.2	-	2	261	c.53C>T	c.(52-54)TCC>TTC	p.S18F		NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	18					activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GTGATTTGGGGATAAGCTGAG	0.403													46	83					0	0	0.003610	0	0
CADM2	253559	broad.mit.edu	37	3	85932485	85932485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:85932485G>A	uc003dqj.2	+	3	882	c.256G>A	c.(256-258)GAA>AAA	p.E86K	CADM2_uc003dqk.2_Missense_Mutation_p.E95K|CADM2_uc003dql.2_Missense_Mutation_p.E88K	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	86	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		TTCCTGGCATGAATTGAGTAT	0.393													9	19					0	0	0.000443	0	0
CADM2	253559	broad.mit.edu	37	3	86028388	86028388	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:86028388A>C	uc003dqj.2	+	8	1644	c.1018A>C	c.(1018-1020)ATA>CTA	p.I340L	CADM2_uc003dqk.2_Intron|CADM2_uc003dql.2_Missense_Mutation_p.I342L	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	340	Thr-rich.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		CACTGTAGCCATAACAACCAG	0.448													63	107					0	0	0.003610	0	0
CADM2	253559	broad.mit.edu	37	3	86115863	86115863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:86115863C>T	uc003dqj.2	+	10	1864	c.1238C>T	c.(1237-1239)GCT>GTT	p.A413V	CADM2_uc003dqk.2_Missense_Mutation_p.A382V|CADM2_uc003dql.2_Missense_Mutation_p.A415V|uc003dqm.1_5'Flank	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	413	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GCACCAGATGCTGATACAGCC	0.378													28	40					0	0	0.005443	0	0
POU1F1	5449	broad.mit.edu	37	3	87309064	87309064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:87309064C>T	uc003dqq.1	-	6	981	c.856G>A	c.(856-858)GAA>AAA	p.E286K	POU1F1_uc010hoj.1_Missense_Mutation_p.E312K	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	286					negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		TCAAGATGTTCCTTAGAAATA	0.358													14	27					0	0	0.003163	0	0
HTR1F	3355	broad.mit.edu	37	3	88040444	88040444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:88040444C>T	uc003dqr.2	+	2	703	c.545C>T	c.(544-546)ACC>ATC	p.T182I		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	182	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	ATTGTTTCCACCATTTACTCA	0.383													26	35					0	0	0.001271	0	0
EPHA3	2042	broad.mit.edu	37	3	89391080	89391080	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:89391080C>T	uc003dqy.2	+	5	1371	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F	EPHA3_uc003dqx.1_Silent_p.F382F|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	382	Extracellular (Potential).|Fibronectin type-III 1.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		ATGTCCGCTTCCTCCCTCGAC	0.473										TSP Lung(6;0.00050)			23	23					0	0	0.003330	0	0
EPHA6	285220	broad.mit.edu	37	3	96945212	96945212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:96945212G>A	uc010how.1	+	4	1262	c.1219G>A	c.(1219-1221)GAA>AAA	p.E407K	EPHA6_uc003drp.1_Missense_Mutation_p.E407K	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	312	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CTGTCAGTGTGAAAAGGGTTA	0.398													63	104					0	0	0.003610	0	0
EPHA6	285220	broad.mit.edu	37	3	96962854	96962854	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:96962854G>A	uc010how.1	+	5	1372	c.1329G>A	c.(1327-1329)TTG>TTA	p.L443L	EPHA6_uc003drp.1_Silent_p.L443L	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	348	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CCCTTATTTTGGAATGGAGCC	0.418													15	14					0	0	0.000958	0	0
EPHA6	285220	broad.mit.edu	37	3	97311499	97311499	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:97311499C>T	uc010how.1	+	12	2473	c.2430C>T	c.(2428-2430)TTC>TTT	p.F810F	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Silent_p.F176F|EPHA6_uc003drs.3_Silent_p.F202F|EPHA6_uc003drr.3_Silent_p.F202F|EPHA6_uc003drt.2_Silent_p.F202F|EPHA6_uc010hox.1_Intron	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	715	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GCCCCAGCTTCCTGAGGGCAG	0.488													22	31					0	0	0.002299	0	0
OR5H2	79310	broad.mit.edu	37	3	98001920	98001920	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:98001920C>T	uc003dsj.1	+	1	189	c.189C>T	c.(187-189)CCC>CCT	p.P63P		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTCACATCCCCATGTACTTTT	0.418													91	147					0	0	0.003610	0	0
OR5H2	79310	broad.mit.edu	37	3	98002107	98002107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:98002107G>A	uc003dsj.1	+	1	376	c.376G>A	c.(376-378)GAT>AAT	p.D126N		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AATGGCATATGATCGCTATGT	0.373													34	44					0	0	0.003271	0	0
OR5K2	402135	broad.mit.edu	37	3	98216596	98216596	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:98216596G>A	uc011bgx.1	+	1	72	c.72G>A	c.(70-72)AAG>AAA	p.K24K		NM_001004737	NP_001004737	Q8NHB8	OR5K2_HUMAN	olfactory receptor, family 5, subfamily K,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						CTGAGCTGAAGACTCTGCTGT	0.418													42	56					0	0	0.003610	0	0
COL8A1	1295	broad.mit.edu	37	3	99513301	99513301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:99513301G>A	uc003dtg.1	+	5	801	c.556G>A	c.(556-558)GAA>AAA	p.E186K	COL8A1_uc003dth.1_Missense_Mutation_p.E186K|COL8A1_uc003dti.1_Missense_Mutation_p.E187K	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	186	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						ACAGAAAGGGGAAATTGGGCC	0.587													8	22					0	0	0.004482	0	0
ALCAM	214	broad.mit.edu	37	3	105260559	105260559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:105260559C>T	uc003dvx.2	+	8	1481	c.941C>T	c.(940-942)TCC>TTC	p.S314F	ALCAM_uc003dvw.1_Missense_Mutation_p.S314F|ALCAM_uc003dvy.2_Missense_Mutation_p.S314F|ALCAM_uc011bhh.1_Missense_Mutation_p.S263F|ALCAM_uc010hpp.2_Intron|ALCAM_uc003dvz.2_5'Flank	NM_001627	NP_001618	Q13740	CD166_HUMAN	activated leukocyte cell adhesion molecule	314	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(2)|breast(1)	3						TACAAGTGTTCCCTGATAGAC	0.428													28	30					0	0	0.005443	0	0
HHLA2	11148	broad.mit.edu	37	3	108072296	108072296	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108072296C>T	uc003dwy.3	+	4	254	c.87C>T	c.(85-87)TTC>TTT	p.F29F	HHLA2_uc011bhl.1_Intron|HHLA2_uc010hpu.2_Silent_p.F29F|HHLA2_uc003dwz.2_Silent_p.F29F	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	29						integral to membrane				ovary(1)	1						TGGCTTTCTTCATTTATGTTC	0.378													6	6					0	0	0.001984	0	0
HHLA2	11148	broad.mit.edu	37	3	108072364	108072364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108072364C>T	uc003dwy.3	+	4	322	c.155C>T	c.(154-156)TCA>TTA	p.S52L	HHLA2_uc011bhl.1_Intron|HHLA2_uc010hpu.2_Missense_Mutation_p.S52L|HHLA2_uc003dwz.2_Missense_Mutation_p.S52L	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	52						integral to membrane				ovary(1)	1						CTCCCTTCTTCATTTGAGAGG	0.383													8	8					0	0	0.004482	0	0
MYH15	22989	broad.mit.edu	37	3	108117571	108117571	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108117571G>A	uc003dxa.1	-	36	5163	c.5106C>T	c.(5104-5106)TCC>TCT	p.S1702S		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1702	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCTCTTGCAGGGACCTTAGAT	0.522													71	102					0	0	0.003610	0	0
MYH15	22989	broad.mit.edu	37	3	108117583	108117583	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108117583C>T	uc003dxa.1	-	36	5151	c.5094G>A	c.(5092-5094)GAG>GAA	p.E1698E		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1698	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						ACCTTAGATCCTCTAGTTCAG	0.512													73	105					0	0	0.003610	0	0
MYH15	22989	broad.mit.edu	37	3	108135770	108135770	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108135770G>A	uc003dxa.1	-	30	3954	c.3897C>T	c.(3895-3897)TTC>TTT	p.F1299F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1299	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCCTCCGTAGGAACTCGCCTA	0.443													21	28					0	0	0.001061	0	0
MYH15	22989	broad.mit.edu	37	3	108182070	108182070	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108182070A>G	uc003dxa.1	-	17	1869	c.1812T>C	c.(1810-1812)GGT>GGC	p.G604G		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	604	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTTCCAGCCAACCACTGATAT	0.383													49	83					0	0	0.003610	0	0
MYH15	22989	broad.mit.edu	37	3	108219037	108219037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108219037C>T	uc003dxa.1	-	5	541	c.484G>A	c.(484-486)GGG>AGG	p.G162R		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	162	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CGCCTCTTCCCTTTGTAGGCG	0.473													18	20					0	0	0.000958	0	0
RETNLB	84666	broad.mit.edu	37	3	108476021	108476021	+	Silent	SNP	G	A	A	rs145650386	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108476021G>A	uc003dxh.2	-	1	110	c.12C>T	c.(10-12)TCC>TCT	p.S4S		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	4					cell proliferation	extracellular region	hormone activity			skin(1)	1						GGAGGCAAGAGGACGGCCCCA	0.522													9	21					0	0	0.000443	0	0
MORC1	27136	broad.mit.edu	37	3	108751625	108751625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108751625C>T	uc003dxl.2	-	16	1594	c.1507G>A	c.(1507-1509)GAA>AAA	p.E503K	MORC1_uc011bhn.1_Missense_Mutation_p.E503K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	503	CW-type.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						AATTCTTTTTCCTGATAATTA	0.289													31	45					0	0	0.004878	0	0
MORC1	27136	broad.mit.edu	37	3	108778652	108778653	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108778652_108778653CC>TT	uc003dxl.2	-	12	1118	c.1031_splice	c.e12+1	p.R344_splice	MORC1_uc011bhn.1_Splice_Site_p.R344_splice	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1						cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTGTGTCTTACCTTTGTTTCTC	0.361													9	21					0	0	0.004672	0	0
MORC1	27136	broad.mit.edu	37	3	108818267	108818267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108818267C>T	uc003dxl.2	-	6	448	c.361G>A	c.(361-363)GAA>AAA	p.E121K	MORC1_uc011bhn.1_Missense_Mutation_p.E121K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	121					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATCGTTTCTTCCTTCTTCGTA	0.343													22	39					0	0	0.004656	0	0
MORC1	27136	broad.mit.edu	37	3	108822724	108822724	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:108822724G>A	uc003dxl.2	-	4	282	c.195C>T	c.(193-195)TTC>TTT	p.F65F	MORC1_uc011bhn.1_Silent_p.F65F	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	65					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CATCATCCAGGAAACACAACA	0.358													36	40					0	0	0.002222	0	0
CD96	10225	broad.mit.edu	37	3	111304183	111304183	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:111304183C>T	uc003dxw.2	+	6	983	c.813C>T	c.(811-813)ATC>ATT	p.I271I	CD96_uc003dxv.2_Silent_p.I255I|CD96_uc003dxx.2_Silent_p.I255I|CD96_uc010hpy.1_Silent_p.I255I	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	271	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						AACCAGAAATCCCTGTGATTG	0.403									Opitz_Trigonocephaly_syndrome				9	18					0	0	0.000978	0	0
ZBED2	79413	broad.mit.edu	37	3	111312910	111312910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:111312910G>A	uc003dxy.2	-	2	1024	c.139C>T	c.(139-141)CCC>TCC	p.P47S	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	47							DNA binding|metal ion binding			skin(1)	1						TTGTTGTGGGGCATTGGAGTG	0.547													18	26					0	0	0.002299	0	0
PHLDB2	90102	broad.mit.edu	37	3	111688663	111688663	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:111688663G>C	uc010hqa.2	+	16	3853	c.3442G>C	c.(3442-3444)GGA>CGA	p.G1148R	PHLDB2_uc003dyc.2_Missense_Mutation_p.G1132R|PHLDB2_uc003dyd.2_Missense_Mutation_p.G1105R|PHLDB2_uc003dyg.2_Missense_Mutation_p.G1148R|PHLDB2_uc003dyh.2_Missense_Mutation_p.G1105R|PHLDB2_uc003dyi.2_Missense_Mutation_p.G639R|PHLDB2_uc003dyj.2_Missense_Mutation_p.G203R	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	1148	PH.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GACCTGCCGAGGATTCCTCAT	0.438													40	61					0	0	0.001485	0	0
CD200R1L	344807	broad.mit.edu	37	3	112538669	112538669	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:112538669G>A	uc003dzi.1	-	5	979	c.753C>T	c.(751-753)GTC>GTT	p.V251V	CD200R1L_uc011bhw.1_Silent_p.V230V|CD200R1L_uc010hqf.1_Silent_p.V230V	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	251	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)	1						TGACCAGAATGACCACAAAAA	0.383													26	38					0	0	0.003954	0	0
CD200R1L	344807	broad.mit.edu	37	3	112546326	112546326	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:112546326C>T	uc003dzi.1	-	3	544	c.318G>A	c.(316-318)CAG>CAA	p.Q106Q	CD200R1L_uc011bhw.1_Silent_p.Q85Q|CD200R1L_uc010hqf.1_Silent_p.Q85Q	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	106	Ig-like V-type.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						GGTCCGAATTCTGATCAGGTC	0.473													30	36					0	0	0.001271	0	0
C3orf17	25871	broad.mit.edu	37	3	112738443	112738443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:112738443G>A	uc003dzr.2	-	1	113	c.52C>T	c.(52-54)CCT>TCT	p.P18S	C3orf17_uc011bhz.1_5'UTR|C3orf17_uc010hqh.2_5'UTR|C3orf17_uc003dzt.2_5'UTR|C3orf17_uc003dzs.2_5'UTR|C3orf17_uc010hqg.2_5'UTR|C3orf17_uc011bia.1_5'UTR|C3orf17_uc003dzu.2_Missense_Mutation_p.P17S|C3orf17_uc011bib.1_5'UTR|C3orf17_uc011bic.1_5'UTR|C3orf17_uc011bid.1_RNA	NM_015412	NP_056227	Q6NW34	CC017_HUMAN	hypothetical protein LOC25871	18						integral to membrane					0						CCCGCCTTAGGGATTCTCACA	0.692													6	12					0	0	0.000443	0	0
WDR52	55779	broad.mit.edu	37	3	113085083	113085083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:113085083G>A	uc003eae.1	-	19	2564	c.2518C>T	c.(2518-2520)CCT>TCT	p.P840S	WDR52_uc003ead.1_Missense_Mutation_p.P21S	NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	840	WD 8.									central_nervous_system(1)	1						GTCAATGAAGGATCATTTTGA	0.318													30	46					0	0	0.001786	0	0
SIDT1	54847	broad.mit.edu	37	3	113285303	113285303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:113285303G>A	uc003eak.2	+	2	910	c.259G>A	c.(259-261)GAG>AAG	p.E87K	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.E87K|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	87	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						CAGTTCCTCTGAGAATCTCAA	0.448													36	67					0	0	0.005524	0	0
KIAA1407	57577	broad.mit.edu	37	3	113724794	113724794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:113724794G>A	uc003eax.2	-	10	1576	c.1429C>T	c.(1429-1431)CCT>TCT	p.P477S	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Missense_Mutation_p.P455S|KIAA1407_uc011bip.1_Missense_Mutation_p.P464S	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	477										ovary(2)	2						TCCCACAAAGGGGGCACAGCA	0.463													30	46					0	0	0.002096	0	0
UPK1B	7348	broad.mit.edu	37	3	118906807	118906807	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:118906807G>A	uc003ecc.2	+	3	344	c.255G>A	c.(253-255)AGG>AGA	p.R85R	UPK1B_uc011bix.1_Silent_p.R5R|UPK1B_uc003ecd.2_Silent_p.R85R	NM_006952	NP_008883	O75841	UPK1B_HUMAN	uroplakin 1B	85	Cytoplasmic (Potential).				epithelial cell differentiation	integral to membrane	structural molecule activity				0				GBM - Glioblastoma multiforme(114;0.222)		AGTCCAGCAGGAAAATTCTTC	0.468													20	40					0	0	0.002780	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119101181	119101181	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:119101181C>T	uc003ecj.3	+	5	1006	c.474C>T	c.(472-474)TCC>TCT	p.S158S		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	158	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						ATATCGCCTCCTTCAGCAGCA	0.547													34	55					0	0	0.001951	0	0
KTELC1	56983	broad.mit.edu	37	3	119190292	119190292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:119190292C>T	uc003ecm.2	+	3	397	c.313C>T	c.(313-315)CCC>TCC	p.P105S	KTELC1_uc011biz.1_RNA|KTELC1_uc011bja.1_5'UTR	NM_152305	NP_689518	Q8NBL1	PGLT1_HUMAN	KTEL (Lys-Tyr-Glu-Leu) containing 1 precursor	105						endoplasmic reticulum lumen	UDP-glucosyltransferase activity				0				GBM - Glioblastoma multiforme(114;0.233)		CTGCATGTTCCCCTCAAGGTA	0.443													20	34					0	0	0.001882	0	0
C3orf15	89876	broad.mit.edu	37	3	119426309	119426309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:119426309C>T	uc010hqx.1	+	3	337	c.260C>T	c.(259-261)TCT>TTT	p.S87F	C3orf15_uc003edc.2_Missense_Mutation_p.S87F|C3orf15_uc010hqy.1_Missense_Mutation_p.S87F|C3orf15_uc003ede.3_Missense_Mutation_p.S87F|C3orf15_uc010hqz.2_Missense_Mutation_p.S25F|C3orf15_uc011bjd.1_Intron|C3orf15_uc011bje.1_Missense_Mutation_p.S67F|C3orf15_uc010hra.1_5'UTR			Q7Z4T9	AAT1_HUMAN	RecName: Full=AMY-1-associating protein expressed in testis 1;          Short=AAT-1;	87						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CCAAGATATTCTCTATATTGG	0.438													35	45					0	0	0.003271	0	0
C3orf15	89876	broad.mit.edu	37	3	119449180	119449180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:119449180G>A	uc003ede.3	+	8	1051	c.974G>A	c.(973-975)GGA>GAA	p.G325E	C3orf15_uc010hqy.1_Missense_Mutation_p.G325E|C3orf15_uc010hqz.2_Missense_Mutation_p.G263E|C3orf15_uc011bjd.1_Missense_Mutation_p.G199E|C3orf15_uc011bje.1_Missense_Mutation_p.G305E|C3orf15_uc010hra.1_Missense_Mutation_p.G86E	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	325						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CTGCAGGAGGGAAAAGAGGCA	0.443													63	63					0	0	0.003610	0	0
HGD	3081	broad.mit.edu	37	3	120360505	120360505	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:120360505C>T	uc003edw.2	-	11	1180	c.810G>A	c.(808-810)GGG>GGA	p.G270G	HGD_uc003edv.2_Silent_p.G129G	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	270			G -> R (in AKU).		L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		GTGTATAATTCCCGTGCCAGG	0.443													30	63					0	0	0.004878	0	0
STXBP5L	9515	broad.mit.edu	37	3	120952509	120952509	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:120952509C>T	uc003eec.3	+	12	1298	c.1158C>T	c.(1156-1158)CTC>CTT	p.L386L	STXBP5L_uc011bji.1_Silent_p.L386L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	386	WD 7.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGAAAGATCTCATTGTAGTTG	0.279													21	23					0	0	0.001061	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126223	121126223	+	Silent	SNP	G	A	A	rs145354820		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:121126223G>A	uc003eec.3	+	24	2933	c.2793G>A	c.(2791-2793)AGG>AGA	p.R931R	STXBP5L_uc011bji.1_Silent_p.R907R	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	931	WD 12.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane		p.R931R(1)		ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CTTGGAGAAGGAAAGTGGTAA	0.398													19	36					0	0	0.000958	0	0
SLC15A2	6565	broad.mit.edu	37	3	121659234	121659234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:121659234C>T	uc003eep.2	+	21	2065	c.1912C>T	c.(1912-1914)CCC>TCC	p.P638S	SLC15A2_uc011bjn.1_Missense_Mutation_p.P607S	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	638					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TCCCCAGGCTCCCTCTAGCAT	0.493													25	25					0	0	0.005443	0	0
CD86	942	broad.mit.edu	37	3	121822513	121822513	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:121822513G>A	uc003eet.2	+	3	335	c.219G>A	c.(217-219)GAG>GAA	p.E73E	CD86_uc011bjo.1_5'UTR|CD86_uc011bjp.1_Intron|CD86_uc003eeu.2_Silent_p.E67E	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	73	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	TAGGCAAAGAGAAATTTGACA	0.433													29	53					0	0	0.001512	0	0
CD86	942	broad.mit.edu	37	3	121825157	121825157	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:121825157T>A	uc003eet.2	+	4	629	c.513T>A	c.(511-513)GTT>GTA	p.V171V	CD86_uc011bjo.1_Silent_p.V89V|CD86_uc011bjp.1_Silent_p.V59V|CD86_uc003eeu.2_Silent_p.V165V	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	171	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	AGATGAGTGTTTTGCTAAGAA	0.363													23	31					0	0	0.002780	0	0
CASR	846	broad.mit.edu	37	3	122003041	122003041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:122003041C>T	uc003eev.3	+	7	2612	c.2240C>T	c.(2239-2241)CCC>CTC	p.P747L	CASR_uc003eew.3_Missense_Mutation_p.P757L	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	747	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TACACCGCGCCCCCGTCAAGC	0.587													17	26					0	0	0.001216	0	0
DTX3L	151636	broad.mit.edu	37	3	122283299	122283300	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:122283299_122283300CC>TT	uc003efk.2	+	1	115_116	c.26_27CC>TT	c.(25-27)TCC>TTT	p.S9F	DTX3L_uc010hrj.2_Missense_Mutation_p.S9F|PARP9_uc003eff.3_5'Flank|PARP9_uc010hri.2_5'Flank|PARP9_uc011bjs.1_5'Flank|PARP9_uc003efg.2_5'Flank|PARP9_uc003efi.2_5'UTR|PARP9_uc003efh.2_5'UTR|PARP9_uc003efj.2_5'Flank	NM_138287	NP_612144	Q8TDB6	DTX3L_HUMAN	deltex 3-like	9					histone monoubiquitination|response to DNA damage stimulus	cytoplasm|nucleus	histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)	4				GBM - Glioblastoma multiforme(114;0.0459)		CGCCCGCCGTCCCCGCTCCTCG	0.728													9	12					0	0	0.004672	0	0
DTX3L	151636	broad.mit.edu	37	3	122289444	122289444	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:122289444G>T	uc003efk.2	+	4	2167	c.2078G>T	c.(2077-2079)CGC>CTC	p.R693L	DTX3L_uc010hrj.2_Missense_Mutation_p.R181L	NM_138287	NP_612144	Q8TDB6	DTX3L_HUMAN	deltex 3-like	693					histone monoubiquitination|response to DNA damage stimulus	cytoplasm|nucleus	histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)	4				GBM - Glioblastoma multiforme(114;0.0459)		GGGTACTCTCGCGTATTAGGA	0.428													23	36					2.21704e-12	3.84028e-12	0.002780	1	0
ADCY5	111	broad.mit.edu	37	3	123014943	123014943	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:123014943G>A	uc003egh.1	-	17	3051	c.3051C>T	c.(3049-3051)CTC>CTT	p.L1017L	ADCY5_uc003egg.1_Silent_p.L675L	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1017	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GCAGTTTCCAGAGGAAGTCGA	0.637													15	18					0	0	0.003163	0	0
CCDC14	64770	broad.mit.edu	37	3	123634093	123634093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:123634093G>A	uc011bjx.1	-	13	2486	c.2395C>T	c.(2395-2397)CCT>TCT	p.P799S	CCDC14_uc003egv.3_Missense_Mutation_p.P440S|CCDC14_uc003egx.3_Missense_Mutation_p.P599S|CCDC14_uc010hrt.2_Missense_Mutation_p.P758S|CCDC14_uc003egy.3_Missense_Mutation_p.P599S|CCDC14_uc003egz.2_Intron	NM_022757	NP_073594	Q49A88	CCD14_HUMAN	coiled-coil domain containing 14	799						centrosome					0		Lung NSC(201;0.0371)|Prostate(884;0.0405)|Myeloproliferative disorder(1037;0.205)		Lung(219;0.00942)|GBM - Glioblastoma multiforme(114;0.159)		TGTGGCTGAGGGGATAGTCTC	0.393													46	50					0	0	0.003610	0	0
MUC13	56667	broad.mit.edu	37	3	124646518	124646518	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:124646518A>T	uc003ehq.1	-	2	396	c.372T>A	c.(370-372)TCT>TCA	p.S124S		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	124	Thr-rich.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						CATCATTTGGAGATGAAGCGG	0.423													59	96					0	0	0.003610	0	0
HEG1	57493	broad.mit.edu	37	3	124732113	124732113	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:124732113G>A	uc003ehs.3	-	6	2378	c.2310C>T	c.(2308-2310)CTC>CTT	p.L770L	HEG1_uc011bke.1_Silent_p.L870L	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	770	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GACTACTATGGAGCATTGTCA	0.493													58	102					0	0	0.003610	0	0
HEG1	57493	broad.mit.edu	37	3	124739768	124739768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:124739768G>A	uc003ehs.3	-	4	1188	c.1120C>T	c.(1120-1122)CTT>TTT	p.L374F	HEG1_uc011bke.1_Missense_Mutation_p.L374F	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	374	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GAGGGTGAAAGAAGGACTGAG	0.488													12	29					0	0	0.001368	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125874302	125874302	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:125874302G>A	uc003eim.1	-	5	763	c.573C>T	c.(571-573)CTC>CTT	p.L191L	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Intron|ALDH1L1_uc003eio.2_5'UTR|ALDH1L1_uc010hsf.1_Silent_p.L217L|ALDH1L1_uc003eip.1_Silent_p.L98L|ALDH1L1_uc011bkj.1_Silent_p.L16L	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	191	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CAGGCTGAGGGAGTCTGGGGG	0.612													14	21					0	0	0.003163	0	0
CCDC37	348807	broad.mit.edu	37	3	126142440	126142440	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:126142440G>C	uc003eiu.1	+	13	1338	c.1239G>C	c.(1237-1239)AAG>AAC	p.K413N	CCDC37_uc010hsg.1_Missense_Mutation_p.K414N	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	413	Potential.									ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		AGACGGAGAAGACCCTGGAGG	0.612													15	28					0	0	0.004990	0	0
ZXDC	79364	broad.mit.edu	37	3	126189788	126189788	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:126189788C>A	uc003eiv.2	-	4	1274	c.1220G>T	c.(1219-1221)GGC>GTC	p.G407V	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Missense_Mutation_p.G407V	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	407	C2H2-type 8.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		TATGCTGTGGCCTTTCAGATG	0.473													14	36					0.000151284	0.000260568	0.001855	1	0
ZXDC	79364	broad.mit.edu	37	3	126191064	126191064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:126191064G>A	uc003eiv.2	-	2	1046	c.992C>T	c.(991-993)TCC>TTC	p.S331F	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Missense_Mutation_p.S331F	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	331	C2H2-type 6.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.S331P(1)		ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		CCCAGGAAAGGAGCAGGAAAA	0.493													28	26					0	0	0.001786	0	0
MGLL	11343	broad.mit.edu	37	3	127414013	127414013	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:127414013G>A	uc003ejx.2	-	7	736	c.591C>T	c.(589-591)GAC>GAT	p.D197D	MGLL_uc003ejw.2_Silent_p.D207D|MGLL_uc011bko.1_Silent_p.D177D|MGLL_uc003ejv.2_Silent_p.D171D	NM_001003794	NP_001003794	Q99685	MGLL_HUMAN	monoglyceride lipase isoform 2	197					arachidonic acid metabolic process|fatty acid biosynthetic process|inflammatory response|platelet activation|regulation of endocannabinoid signaling pathway|regulation of inflammatory response|regulation of sensory perception of pain|triglyceride catabolic process	plasma membrane	acylglycerol lipase activity|carboxylesterase activity|lysophospholipase activity|protein homodimerization activity				0						AGATCAGGGGGTCTGAGTTAT	0.582													9	18					0	0	0.000978	0	0
MGLL	11343	broad.mit.edu	37	3	127441400	127441400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:127441400C>T	uc003ejx.2	-	4	387	c.242G>A	c.(241-243)GGA>GAA	p.G81E	MGLL_uc003ejw.2_Missense_Mutation_p.G91E|MGLL_uc011bko.1_Missense_Mutation_p.G91E|MGLL_uc010hsp.1_Missense_Mutation_p.G81E|MGLL_uc003ejv.2_Missense_Mutation_p.G55E	NM_001003794	NP_001003794	Q99685	MGLL_HUMAN	monoglyceride lipase isoform 2	81					arachidonic acid metabolic process|fatty acid biosynthetic process|inflammatory response|platelet activation|regulation of endocannabinoid signaling pathway|regulation of inflammatory response|regulation of sensory perception of pain|triglyceride catabolic process	plasma membrane	acylglycerol lipase activity|carboxylesterase activity|lysophospholipase activity|protein homodimerization activity				0						TTCGCTCTGTCCGTGGCCAAC	0.527													13	15					0	0	0.004990	0	0
KBTBD12	166348	broad.mit.edu	37	3	127702959	127702959	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:127702959C>T	uc010hsr.2	+	5	1713	c.1710C>T	c.(1708-1710)TCC>TCT	p.S570S	KBTBD12_uc003ejy.3_Silent_p.S177S|KBTBD12_uc010hsq.2_RNA|KBTBD12_uc003eka.3_Silent_p.S145S	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	570	Kelch 4.									ovary(1)	1						AGGTTATCTCCAAAGAAATAT	0.438													34	58					0	0	0.004289	0	0
EEFSEC	60678	broad.mit.edu	37	3	128060226	128060226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:128060226C>T	uc003eki.2	+	5	975	c.937C>T	c.(937-939)CAT>TAT	p.H313Y	EEFSEC_uc003ekj.2_Missense_Mutation_p.H258Y	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	313						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						GCACACTGTCCATGCGGCCCT	0.592													14	22					0	0	0.004007	0	0
GATA2	2624	broad.mit.edu	37	3	128200680	128200680	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:128200680G>A	uc003ekm.3	-	6	1560	c.1125C>T	c.(1123-1125)CTC>CTT	p.L375L	GATA2_uc003ekn.3_Silent_p.L361L|GATA2_uc003eko.2_Silent_p.L375L	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	375					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		GCTTGTAGTAGAGGCCACAGG	0.647			Mis		AML(CML blast transformation)								11	21					0	0	0.000978	0	0
IFT122	55764	broad.mit.edu	37	3	129200535	129200535	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:129200535C>T	uc003emm.2	+	14	1857	c.1651C>T	c.(1651-1653)CAG>TAG	p.Q551*	IFT122_uc003eml.2_Nonsense_Mutation_p.Q602*|IFT122_uc003emn.2_Nonsense_Mutation_p.Q492*|IFT122_uc003emo.2_Nonsense_Mutation_p.Q440*|IFT122_uc003emp.2_Nonsense_Mutation_p.Q401*|IFT122_uc010htc.2_Nonsense_Mutation_p.Q543*|IFT122_uc011bky.1_Nonsense_Mutation_p.Q342*|IFT122_uc003emq.2_Nonsense_Mutation_p.Q391*|IFT122_uc003emr.2_Nonsense_Mutation_p.Q342*|IFT122_uc011bla.1_Nonsense_Mutation_p.Q342*|IFT122_uc011bkx.1_Nonsense_Mutation_p.Q391*|IFT122_uc011bkz.1_RNA|IFT122_uc010htd.1_Nonsense_Mutation_p.Q30*	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	551	WD 7.				camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						GCTGCTTTTTCAGGTGAAGTC	0.562													12	28					0	0	0.004007	0	0
COL29A1	256076	broad.mit.edu	37	3	130188205	130188205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:130188205G>A	uc010htj.1	+	38	7851	c.7357G>A	c.(7357-7359)GAA>AAA	p.E2453K	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.E492K	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2453	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						CAATGACAAAGAATTAGAAGA	0.438													27	21					0	0	0.003954	0	0
COL6A6	131873	broad.mit.edu	37	3	130285982	130285982	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:130285982G>A	uc010htl.2	+	4	1750	c.1719G>A	c.(1717-1719)AAG>AAA	p.K573K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	573	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TCGGGATCAAGGAGGCCAACC	0.448													49	72					0	0	0.003610	0	0
COL6A6	131873	broad.mit.edu	37	3	130286982	130286982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:130286982G>A	uc010htl.2	+	5	1966	c.1935G>A	c.(1933-1935)ATG>ATA	p.M645I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	645	Nonhelical region.|VWFA 4.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AAACATTTATGAAAAACCTGG	0.423													38	82					0	0	0.004878	0	0
TOPBP1	11073	broad.mit.edu	37	3	133331239	133331239	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:133331239G>A	uc003eps.2	-	24	4161	c.4029C>T	c.(4027-4029)TTC>TTT	p.F1343F		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	1343	BRCT 7.				DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						ACACCTGCACGAAGTGTCCAG	0.368								Other_conserved_DNA_damage_response_genes					12	23					0	0	0.001855	0	0
KY	339855	broad.mit.edu	37	3	134329145	134329145	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:134329145T>A	uc010hty.2	-	9	853	c.791A>T	c.(790-792)GAG>GTG	p.E264V	KY_uc011blw.1_Missense_Mutation_p.E264V|KY_uc011blx.1_Missense_Mutation_p.E243V|KY_uc003eqr.1_Missense_Mutation_p.E30V	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	264						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						ATGGTCAAACTCCCCCGAGAA	0.622													17	35					0	0	0.004990	0	0
STAG1	10274	broad.mit.edu	37	3	136141862	136141862	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:136141862T>C	uc003era.1	-	17	1967	c.1675A>G	c.(1675-1677)ACT>GCT	p.T559A	STAG1_uc003erb.1_Missense_Mutation_p.T559A|STAG1_uc003erc.1_Missense_Mutation_p.T333A|STAG1_uc010hua.1_Missense_Mutation_p.T422A	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	559					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						TCAATTTGAGTTTTCCTTTCT	0.299													7	12					0	0	0.004482	0	0
PRR23C	389152	broad.mit.edu	37	3	138762997	138762997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:138762997C>T	uc011bmt.1	-	1	738	c.466G>A	c.(466-468)GAG>AAG	p.E156K		NM_001134657	NP_001128129	Q6ZRP0	PR23C_HUMAN	proline rich 23C	156										skin(1)	1						GCGTCCTCCTCGTAGGCCTCT	0.632													4	3					0	0	0.000248	0	0
NMNAT3	349565	broad.mit.edu	37	3	139297869	139297869	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:139297869G>A	uc003etj.2	-	2	178	c.138C>T	c.(136-138)ATC>ATT	p.I46I	NMNAT3_uc003etk.2_Silent_p.I9I|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Intron	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	46					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						TGACAGGAGAGATGATACCCT	0.562													5	17					0	0	0.001168	0	0
CLSTN2	64084	broad.mit.edu	37	3	140167428	140167428	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:140167428G>A	uc003etn.2	+	6	1045	c.855G>A	c.(853-855)CTG>CTA	p.L285L	CLSTN2_uc003etm.2_Silent_p.L285L	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	285	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GCATCCACCTGGAGACGTGCG	0.527										HNSCC(16;0.037)			50	67					0	0	0.003610	0	0
CLSTN2	64084	broad.mit.edu	37	3	140281662	140281662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:140281662C>T	uc003etn.2	+	14	2412	c.2222C>T	c.(2221-2223)TCC>TTC	p.S741F		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	741	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGTGTGGGCTCCATGAGCCGC	0.567										HNSCC(16;0.037)			14	21					0	0	0.000958	0	0
SPSB4	92369	broad.mit.edu	37	3	140785535	140785535	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:140785535C>T	uc003ett.2	+	2	843	c.589C>T	c.(589-591)CTG>TTG	p.L197L	SPSB4_uc010hum.2_Silent_p.L197L	NM_080862	NP_543138	Q96A44	SPSB4_HUMAN	splA/ryanodine receptor domain and SOCS box	197	B30.2/SPRY.				intracellular signal transduction	cytoplasm	protein binding				0						TGGCCAGTACCTGGGCGTGGC	0.627													9	9					0	0	0.004482	0	0
ZBTB38	253461	broad.mit.edu	37	3	141163062	141163062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:141163062C>T	uc003etw.2	+	8	2814	c.1832C>T	c.(1831-1833)TCT>TTT	p.S611F	ZBTB38_uc010hun.2_Missense_Mutation_p.S608F|ZBTB38_uc010huo.2_Missense_Mutation_p.S611F|ZBTB38_uc003ety.2_Missense_Mutation_p.S611F|ZBTB38_uc010hup.2_Missense_Mutation_p.S612F	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	611					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CCACACAGCTCTGAATTACCA	0.428													52	45					0	0	0.003610	0	0
GRK7	131890	broad.mit.edu	37	3	141499437	141499437	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:141499437C>T	uc011bnd.1	+	2	918	c.834C>T	c.(832-834)TTC>TTT	p.F278F		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	278	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						ACCTCAAGTTCCACATCTACA	0.557													18	52					0	0	0.000958	0	0
GRK7	131890	broad.mit.edu	37	3	141499482	141499482	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:141499482G>A	uc011bnd.1	+	2	963	c.879G>A	c.(877-879)GTG>GTA	p.V293V		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	293	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TGAGCCGGGTGATCTTTTACT	0.557													21	23					0	0	0.002299	0	0
GK5	256356	broad.mit.edu	37	3	141923617	141923617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:141923617G>A	uc003euq.1	-	4	462	c.331C>T	c.(331-333)CAT>TAT	p.H111Y	GK5_uc010hus.1_RNA|GK5_uc010hut.1_RNA	NM_001039547	NP_001034636	Q6ZS86	GLPK5_HUMAN	glycerol kinase 5 (putative)	111					glycerol metabolic process		ATP binding|glycerol kinase activity				0						TTGTGAAAATGATTTCCTGTT	0.313													38	59					0	0	0.004878	0	0
ATR	545	broad.mit.edu	37	3	142280213	142280213	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:142280213G>A	uc003eux.3	-	5	1343	c.1221C>T	c.(1219-1221)ATC>ATT	p.I407I		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	407					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCTCCTCAATGATTTCCATAC	0.363								Other_conserved_DNA_damage_response_genes					21	28					0	0	0.001523	0	0
PLS1	5357	broad.mit.edu	37	3	142402848	142402848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:142402848G>A	uc010huv.2	+	7	739	c.580G>A	c.(580-582)GAA>AAA	p.E194K	PLS1_uc003euz.2_Missense_Mutation_p.E194K|PLS1_uc003eva.2_Missense_Mutation_p.E194K	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	194	Actin-binding 1.|CH 1.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						GGCAATTCAGGAAAATTTAAA	0.358													13	35					0	0	0.001855	0	0
TRPC1	7220	broad.mit.edu	37	3	142455375	142455375	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:142455375G>A	uc003evc.2	+	2	463	c.327G>A	c.(325-327)CAG>CAA	p.Q109Q	TRPC1_uc003evb.2_Silent_p.Q109Q	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	109	ANK 2.|Cytoplasmic (Potential).				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						ACGGTTGTCAGGTACAAGGCT	0.294													35	57					0	0	0.004289	0	0
TRPC1	7220	broad.mit.edu	37	3	142496493	142496493	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:142496493C>T	uc003evc.2	+	5	788	c.652C>T	c.(652-654)CGA>TGA	p.R218*	TRPC1_uc003evb.2_Nonsense_Mutation_p.R184*	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	218	Cytoplasmic (Potential).				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TGATATATATCGATGTTTGGC	0.289													16	28					0	0	0.004007	0	0
SR140	23350	broad.mit.edu	37	3	142773807	142773807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:142773807C>T	uc003evh.1	+	27	2896	c.2797C>T	c.(2797-2799)CCC>TCC	p.P933S	SR140_uc003evi.1_Missense_Mutation_p.P524S|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Missense_Mutation_p.P932S	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	933	Arg/Ser-rich.				RNA processing	nucleus	nucleotide binding|RNA binding				0						CAGTACATCCCCCAGCCCATC	0.458													7	4					0	0	0.003080	0	0
PLOD2	5352	broad.mit.edu	37	3	145790401	145790401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:145790401C>T	uc003evs.1	-	16	2238	c.1732G>A	c.(1732-1734)GAA>AAA	p.E578K	PLOD2_uc003evq.1_Missense_Mutation_p.E259K|PLOD2_uc011bnm.1_Missense_Mutation_p.E544K|PLOD2_uc003evr.1_Missense_Mutation_p.E599K	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	578					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	TCTACCAATTCATCACAGGCT	0.343													12	30					0	0	0.001368	0	0
AGTR1	185	broad.mit.edu	37	3	148459740	148459740	+	Silent	SNP	G	A	A	rs1064535		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:148459740G>A	uc003ewg.2	+	4	1364	c.918G>A	c.(916-918)GGG>GGA	p.G306G	AGTR1_uc003ewh.2_Silent_p.G306G|AGTR1_uc003ewi.2_Silent_p.G306G|AGTR1_uc003ewj.2_Silent_p.G306G|AGTR1_uc003ewk.2_Silent_p.G306G	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	306	Cytoplasmic (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	GCTTTCTGGGGAAAAAATTTA	0.368													42	36					0	0	0.001287	0	0
FAM194A	131831	broad.mit.edu	37	3	150404137	150404137	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:150404137C>T	uc003eyg.2	-	4	615	c.558G>A	c.(556-558)AAG>AAA	p.K186K	FAM194A_uc003eyh.2_Silent_p.K40K	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	186										skin(2)|ovary(1)	3						TAGAGGCTTTCTTCCCTGTGA	0.363													25	33					0	0	0.004656	0	0
SIAH2	6478	broad.mit.edu	37	3	150460391	150460391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:150460391G>A	uc003eyi.2	-	2	1139	c.512C>T	c.(511-513)CCT>CTT	p.P171L		NM_005067	NP_005058	O43255	SIAH2_HUMAN	seven in absentia homolog 2	171	SIAH-type.|SBD.				apoptosis|axon guidance|cell cycle|negative regulation of canonical Wnt receptor signaling pathway|small GTPase mediated signal transduction|ubiquitin-dependent protein catabolic process	cytosol|nucleus	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GGAAGCACCAGGACATGGGCA	0.552													25	40					0	0	0.004656	0	0
P2RY12	64805	broad.mit.edu	37	3	151056490	151056490	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151056490C>T	uc003eyw.1	-	2	360	c.144G>A	c.(142-144)AGG>AGA	p.R48R	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY12_uc011boa.1_Silent_p.R48R|P2RY12_uc003eyx.1_Silent_p.R48R	NM_176876	NP_795345	Q9H244	P2Y12_HUMAN	purinergic receptor P2Y12	48	Cytoplasmic (Potential).				platelet activation	integral to membrane|plasma membrane	guanyl-nucleotide exchange factor activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)		Clopidogrel(DB00758)|Epoprostenol(DB01240)|Ticlopidine(DB00208)|Treprostinil(DB00374)	GAAAGAAAATCCTCATCGCCA	0.388													14	14					0	0	0.004990	0	0
MED12L	116931	broad.mit.edu	37	3	151131009	151131009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151131009C>T	uc003eyp.2	+	40	6156	c.6118C>T	c.(6118-6120)CCC>TCC	p.P2040S	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	2040	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCCAAACCTTCCCTCCGTGCC	0.577													30	26					0	0	0.001512	0	0
IGSF10	285313	broad.mit.edu	37	3	151154827	151154827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151154827C>T	uc011bod.1	-	6	7522	c.7522G>A	c.(7522-7524)GCT>ACT	p.A2508T	IGSF10_uc011bob.1_Missense_Mutation_p.A535T|IGSF10_uc011boc.1_Missense_Mutation_p.A487T	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2508	Ig-like C2-type 11.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTATTTTGAGCCTTACAGATA	0.408													48	69					0	0	0.003610	0	0
IGSF10	285313	broad.mit.edu	37	3	151163025	151163025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151163025C>T	uc011bod.1	-	4	4744	c.4744G>A	c.(4744-4746)GAA>AAA	p.E1582K		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1582					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCAGCAATTTCTGAGTATGGT	0.433													58	64					0	0	0.003610	0	0
IGSF10	285313	broad.mit.edu	37	3	151164382	151164382	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151164382G>A	uc011bod.1	-	4	3387	c.3387C>T	c.(3385-3387)TTC>TTT	p.F1129F		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1129					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTTCAGTCCTGAAATATTTTA	0.413													55	86					0	0	0.003610	0	0
IGSF10	285313	broad.mit.edu	37	3	151164707	151164707	+	Missense_Mutation	SNP	C	T	T	rs35114212	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151164707C>T	uc011bod.1	-	4	3062	c.3062G>A	c.(3061-3063)CGG>CAG	p.R1021Q		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1021					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCTGATAATCCGCCCCCTTCC	0.473													34	48					0	0	0.002836	0	0
IGSF10	285313	broad.mit.edu	37	3	151171421	151171421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151171421G>A	uc011bod.1	-	3	466	c.466C>T	c.(466-468)CGC>TGC	p.R156C		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	156	LRR 5.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGCACCAGGCGGAGAAAGTTG	0.408													29	32					0	0	0.005443	0	0
AADACL2	344752	broad.mit.edu	37	3	151475197	151475197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151475197G>A	uc003ezc.2	+	5	1141	c.1021G>A	c.(1021-1023)GAT>AAT	p.D341N	AADACL2_uc010hvn.2_Missense_Mutation_p.D128N	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	341						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TTGTCAACATGATCTCTTAAG	0.383													38	64					0	0	0.001287	0	0
AADAC	13	broad.mit.edu	37	3	151545418	151545418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:151545418C>T	uc003eze.2	+	5	748	c.658C>T	c.(658-660)CCT>TCT	p.P220S		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	220	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TTTAATTTATCCTGCCCTTCA	0.348													23	33					0	0	0.003330	0	0
C3orf79	152118	broad.mit.edu	37	3	153202397	153202397	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:153202397A>T	uc003ezt.2	+	1	114	c.52A>T	c.(52-54)ACA>TCA	p.T18S		NM_001101337	NP_001094807	P0CE67	CC079_HUMAN	chromosome 3 open reading frame 79	18											0						TGCATTTACTACATTTCCATG	0.428													64	106					0	0	0.003610	0	0
SGEF	26084	broad.mit.edu	37	3	153847442	153847442	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:153847442G>A	uc011bog.1	+	4	1414	c.1203G>A	c.(1201-1203)CAG>CAA	p.Q401Q	SGEF_uc011boh.1_Silent_p.Q401Q	NM_015595	NP_056410	Q96DR7	ARHGQ_HUMAN	Src homology 3 domain-containing guanine	401					regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CCAAAGAACAGAAGTCAGATG	0.413													10	19					0	0	0.000443	0	0
MME	4311	broad.mit.edu	37	3	154886527	154886528	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:154886527_154886528GG>AA	uc010hvr.1	+	20	2132_2133	c.1921_1922GG>AA	c.(1921-1923)GGA>AAA	p.G641K	MME_uc003fab.1_Missense_Mutation_p.G641K|MME_uc003fac.1_Missense_Mutation_p.G641K|MME_uc003fad.1_Missense_Mutation_p.G641K|MME_uc003fae.1_Missense_Mutation_p.G641K	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	641	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	ACAGCTTAATGGAATTAATACA	0.297													27	34					0	0	0.004672	0	0
PLCH1	23007	broad.mit.edu	37	3	155200812	155200812	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:155200812C>T	uc011bok.1	-	23	3304	c.3027G>A	c.(3025-3027)GGG>GGA	p.G1009G	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.G971G	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1009					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TACTTGCTTTCCCTTTTCTTC	0.393													29	74					0	0	0.001061	0	0
PLCH1	23007	broad.mit.edu	37	3	155203269	155203269	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:155203269C>T	uc011bok.1	-	22	3151	c.2874G>A	c.(2872-2874)AGG>AGA	p.R958R	PLCH1_uc011boj.1_Silent_p.R958R|PLCH1_uc011bol.1_Silent_p.R920R	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	958					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTGTGGTCCTCCTCAGCACGC	0.502													42	48					0	0	0.001706	0	0
PLCH1	23007	broad.mit.edu	37	3	155271912	155271912	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:155271912G>A	uc011bok.1	-	8	1384	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	PLCH1_uc011boj.1_Silent_p.F369F|PLCH1_uc011bol.1_Silent_p.F351F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	369	PI-PLC X-box.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CAACATCTCTGAAGAGAATTT	0.453													24	36					0	0	0.004656	0	0
B3GALNT1	8706	broad.mit.edu	37	3	160803554	160803554	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:160803554T>C	uc003fdv.2	-	5	1408	c.989A>G	c.(988-990)CAT>CGT	p.H330R	B3GALNT1_uc003fdw.2_Missense_Mutation_p.H330R|B3GALNT1_uc003fdx.2_Missense_Mutation_p.H330R|B3GALNT1_uc003fdy.2_Missense_Mutation_p.H330R|B3GALNT1_uc003fdz.2_Missense_Mutation_p.H330R|B3GALNT1_uc003fea.2_Missense_Mutation_p.H330R|B3GALNT1_uc011bpa.1_Missense_Mutation_p.H90R	NM_033169	NP_149359	O75752	B3GL1_HUMAN	UDP-Gal:betaGlcNAc beta	330	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;4.41e-05)|Lung(72;4.61e-05)			AAGTTAATAATGGCATGTGGT	0.418													17	41					0	0	0.001523	0	0
NMD3	51068	broad.mit.edu	37	3	160965057	160965057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:160965057C>T	uc003feb.1	+	13	1261	c.1142C>T	c.(1141-1143)GCC>GTC	p.A381V	NMD3_uc003fec.2_Missense_Mutation_p.A381V|NMD3_uc003fed.1_Missense_Mutation_p.A381V|NMD3_uc010hwh.2_Missense_Mutation_p.A201V	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	381					protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			TTTGATTTGGCCAACTGTAAC	0.328													13	35					0	0	0.002450	0	0
OTOL1	131149	broad.mit.edu	37	3	161214652	161214652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:161214652G>A	uc011bpb.1	+	1	57	c.57G>A	c.(55-57)ATG>ATA	p.M19I		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	19						collagen					0						TTGCTGGTATGAACACAATAG	0.373													11	20					0	0	0.000978	0	0
SI	6476	broad.mit.edu	37	3	164757744	164757744	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:164757744C>T	uc003fei.2	-	19	2237	c.2175G>A	c.(2173-2175)ACG>ACA	p.T725T		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	725	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TCCAGCTGTTCGTATCCTCAT	0.333										HNSCC(35;0.089)			59	84					0	0	0.003610	0	0
SI	6476	broad.mit.edu	37	3	164764664	164764664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:164764664C>T	uc003fei.2	-	16	1914	c.1852G>A	c.(1852-1854)GGA>AGA	p.G618R		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	618	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TCCAGCATTCCAGTTATAGAC	0.373										HNSCC(35;0.089)			47	66					0	0	0.003610	0	0
SI	6476	broad.mit.edu	37	3	164786616	164786616	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:164786616A>G	uc003fei.2	-	5	439	c.377T>C	c.(376-378)GTT>GCT	p.V126A		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	126	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TTTGGCTTCAACTCCTTAAAG	0.318										HNSCC(35;0.089)			38	54					0	0	0.004878	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907220	164907220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:164907220C>T	uc003fej.3	-	2	1843	c.1399G>A	c.(1399-1401)GAT>AAT	p.D467N	SLITRK3_uc003fek.2_Missense_Mutation_p.D467N	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	467	LRR 9.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TTCTCTATATCGTTGCCATTA	0.468										HNSCC(40;0.11)			18	21					0	0	0.000958	0	0
ZBBX	79740	broad.mit.edu	37	3	167000208	167000208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:167000208G>A	uc003fep.2	-	19	2278	c.1955C>T	c.(1954-1956)TCA>TTA	p.S652L	ZBBX_uc011bpc.1_Missense_Mutation_p.S691L|ZBBX_uc003feq.2_Missense_Mutation_p.S623L	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	652	Ser-rich.					intracellular	zinc ion binding			ovary(2)	2						ATGAGAGGATGAAAGGCAACT	0.353													65	102					0	0	0.003610	0	0
WDR49	151790	broad.mit.edu	37	3	167246850	167246850	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:167246850C>T	uc003fev.1	-	10	1646	c.1340G>A	c.(1339-1341)TGG>TAG	p.W447*	WDR49_uc003feu.1_Nonsense_Mutation_p.W272*|WDR49_uc011bpd.1_Nonsense_Mutation_p.W511*|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	447	WD 7.									large_intestine(1)|ovary(1)|skin(1)	3						CTCTATATTCCAGATTTTCAA	0.358													19	32					0	0	0.002299	0	0
SERPINI1	5274	broad.mit.edu	37	3	167506980	167506980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:167506980C>T	uc003ffa.3	+	2	262	c.64C>T	c.(64-66)CCT>TCT	p.P22S	SERPINI1_uc003ffb.3_Missense_Mutation_p.P22S	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	22					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity	p.P22S(1)		skin(1)	1						GGCCACTTTCCCTGAGGAAGC	0.408													37	35					0	0	0.005524	0	0
MECOM	2122	broad.mit.edu	37	3	168802767	168802767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:168802767G>A	uc003ffi.3	-	16	3355	c.3086C>T	c.(3085-3087)TCC>TTC	p.S1029F	MECOM_uc010hwk.1_3'UTR|MECOM_uc003ffj.3_Missense_Mutation_p.S1094F|MECOM_uc011bpi.1_Missense_Mutation_p.S1021F|MECOM_uc003ffn.3_Missense_Mutation_p.S1029F|MECOM_uc003ffk.2_Missense_Mutation_p.S1020F|MECOM_uc003ffl.2_Missense_Mutation_p.S1180F|MECOM_uc011bpj.1_Missense_Mutation_p.S1217F|MECOM_uc011bpk.1_Missense_Mutation_p.S1019F	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	1029					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CCACACGTTGGAAGAACTGTG	0.507													28	35					0	0	0.001512	0	0
MECOM	2122	broad.mit.edu	37	3	168802789	168802789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:168802789G>A	uc003ffi.3	-	16	3333	c.3064C>T	c.(3064-3066)CAT>TAT	p.H1022Y	MECOM_uc010hwk.1_3'UTR|MECOM_uc003ffj.3_Missense_Mutation_p.H1087Y|MECOM_uc011bpi.1_Missense_Mutation_p.H1014Y|MECOM_uc003ffn.3_Missense_Mutation_p.H1022Y|MECOM_uc003ffk.2_Missense_Mutation_p.H1013Y|MECOM_uc003ffl.2_Missense_Mutation_p.H1173Y|MECOM_uc011bpj.1_Missense_Mutation_p.H1210Y|MECOM_uc011bpk.1_Missense_Mutation_p.H1012Y	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	1022					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GATGTAGAATGGAGGGACTCC	0.473													19	26					0	0	0.002299	0	0
MECOM	2122	broad.mit.edu	37	3	168812960	168812960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:168812960C>T	uc003ffi.3	-	12	2628	c.2359G>A	c.(2359-2361)GAG>AAG	p.E787K	MECOM_uc010hwk.1_Missense_Mutation_p.E801K|MECOM_uc003ffj.3_Missense_Mutation_p.E852K|MECOM_uc011bpi.1_Missense_Mutation_p.E779K|MECOM_uc003ffn.3_Missense_Mutation_p.E787K|MECOM_uc003ffk.2_Missense_Mutation_p.E778K|MECOM_uc003ffl.2_Missense_Mutation_p.E938K|MECOM_uc011bpj.1_Missense_Mutation_p.E975K|MECOM_uc011bpk.1_Missense_Mutation_p.E777K	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	787					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						AATGGCTTCTCTTTATTGTGG	0.353													31	24					0	0	0.002445	0	0
SKIL	6498	broad.mit.edu	37	3	170108171	170108171	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:170108171C>T	uc003fgu.2	+	5	2302	c.1590C>T	c.(1588-1590)ATC>ATT	p.I530I	SKIL_uc011bps.1_Silent_p.I510I|SKIL_uc003fgv.2_Silent_p.I484I|SKIL_uc003fgw.2_Silent_p.I530I	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	530					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			AGGGAAAAATCATGGAAGAAG	0.348													22	50					0	0	0.001882	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198580	170198580	+	Silent	SNP	C	T	T	rs145787666	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:170198580C>T	uc003fgz.2	-	7	1807	c.1491G>A	c.(1489-1491)GGG>GGA	p.G497G	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	497						integral to membrane	amino acid transmembrane transporter activity	p.G497G(1)		ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			TGTCTGATTTCCCTATGAGCA	0.488													79	100					0	0	0.003610	0	0
SLC2A2	6514	broad.mit.edu	37	3	170732471	170732471	+	Missense_Mutation	SNP	C	T	T	rs145210664		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:170732471C>T	uc003fhe.1	-	3	467	c.158G>A	c.(157-159)CGA>CAA	p.R53Q	SLC2A2_uc003fhf.1_5'UTR|SLC2A2_uc011bpu.1_Intron	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	53	Extracellular (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			GATAGCTTTTCGGTCATCCAG	0.368													38	42					0	0	0.001485	0	0
TNIK	23043	broad.mit.edu	37	3	170800066	170800066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:170800066C>T	uc003fhh.2	-	27	3632	c.3287G>A	c.(3286-3288)GGA>GAA	p.G1096E	TNIK_uc003fhi.2_Missense_Mutation_p.G1041E|TNIK_uc003fhj.2_Missense_Mutation_p.G1067E|TNIK_uc003fhk.2_Missense_Mutation_p.G1088E|TNIK_uc003fhl.2_Missense_Mutation_p.G1012E|TNIK_uc003fhm.2_Missense_Mutation_p.G1033E|TNIK_uc003fhn.2_Missense_Mutation_p.G1059E|TNIK_uc003fho.2_Missense_Mutation_p.G1004E|TNIK_uc003fhg.2_Missense_Mutation_p.G274E|TNIK_uc003fhp.2_Missense_Mutation_p.G28E	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	1096	CNH.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GACATTCAGTCCCTCTAGCAC	0.483													7	13					0	0	0.003080	0	0
TNIK	23043	broad.mit.edu	37	3	170906561	170906561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:170906561C>T	uc003fhh.2	-	7	914	c.569G>A	c.(568-570)GGA>GAA	p.G190E	TNIK_uc003fhi.2_Missense_Mutation_p.G190E|TNIK_uc003fhj.2_Missense_Mutation_p.G190E|TNIK_uc003fhk.2_Missense_Mutation_p.G190E|TNIK_uc003fhl.2_Missense_Mutation_p.G190E|TNIK_uc003fhm.2_Missense_Mutation_p.G190E|TNIK_uc003fhn.2_Missense_Mutation_p.G190E|TNIK_uc003fho.2_Missense_Mutation_p.G190E	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	190	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GTAGGGAGTTCCAATGAAAGT	0.408													22	19					0	0	0.002780	0	0
PLD1	5337	broad.mit.edu	37	3	171392375	171392375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:171392375G>A	uc003fhs.2	-	19	2260	c.2144C>T	c.(2143-2145)TCT>TTT	p.S715F	PLD1_uc003fht.2_Missense_Mutation_p.S677F|PLD1_uc003fhu.3_Missense_Mutation_p.S9F|PLD1_uc003fhv.1_Missense_Mutation_p.S40F	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	715	Catalytic.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	AAAAGGATAAGAAAGGGACCG	0.343													24	44					0	0	0.003954	0	0
NCEH1	57552	broad.mit.edu	37	3	172351766	172351766	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:172351766G>A	uc011bpx.1	-	5	984	c.846C>T	c.(844-846)ATC>ATT	p.I282I	NCEH1_uc003fig.2_Silent_p.I274I|NCEH1_uc011bpw.1_Silent_p.I109I|NCEH1_uc011bpy.1_Silent_p.I109I	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	242	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						AGCGGGGCAGGATTGGGGTGT	0.393													13	34					0	0	0.002450	0	0
NLGN1	22871	broad.mit.edu	37	3	173996672	173996672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:173996672C>T	uc003fio.1	+	6	1304	c.881C>T	c.(880-882)GCT>GTT	p.A294V	NLGN1_uc010hww.1_Missense_Mutation_p.A334V|NLGN1_uc003fip.1_Missense_Mutation_p.A294V	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	311	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			CGAGCAATAGCTCAAAGTGGA	0.368													13	33					0	0	0.002450	0	0
NAALADL2	254827	broad.mit.edu	37	3	175473132	175473133	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:175473132_175473133CC>TT	uc003fit.2	+	13	2202_2203	c.2115_2116CC>TT	c.(2113-2118)ATCCGG>ATTTGG	p.R706W		NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	706	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		CCATCCGCATCCGGATGCTGAA	0.475													6	8					0	0	0.004672	0	0
HTR3D	200909	broad.mit.edu	37	3	183754282	183754282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:183754282C>T	uc011bqv.1	+	4	500	c.500C>T	c.(499-501)TCC>TTC	p.S167F	HTR3D_uc003fmj.2_Missense_Mutation_p.S32F|HTR3D_uc011bqu.1_Missense_Mutation_p.S106F|HTR3D_uc010hxp.2_Intron	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	167	Extracellular (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			ATTTCCCCTTCCATGGACAGA	0.488													19	36					0	0	0.001523	0	0
HTR3E	285242	broad.mit.edu	37	3	183824092	183824092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:183824092G>A	uc010hxq.2	+	8	1568	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	HTR3E_uc003fml.3_Missense_Mutation_p.E353K|HTR3E_uc003fmm.2_Missense_Mutation_p.E383K|HTR3E_uc010hxr.2_Missense_Mutation_p.E394K|HTR3E_uc003fmn.2_Missense_Mutation_p.E368K	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	368	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GCCCCAGAAGGAAAATAAGGG	0.527													5	8					0	0	0.000602	0	0
PSMD2	5708	broad.mit.edu	37	3	184021489	184021489	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:184021489C>T	uc003fnn.1	+	10	1308	c.1275C>T	c.(1273-1275)GGC>GGT	p.G425G	PSMD2_uc011brj.1_Silent_p.G266G|PSMD2_uc011brk.1_Silent_p.G295G	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	425	PC 1.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	TGGATGGTGGCCTCACCCAGA	0.478													15	24					0	0	0.000958	0	0
EPHB3	2049	broad.mit.edu	37	3	184295742	184295742	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:184295742G>A	uc003foz.2	+	8	2133	c.1696G>A	c.(1696-1698)GCT>ACT	p.A566T		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	566	Helical; (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			CTCCGCTACAGCTGGGCTTGT	0.627													28	43					0	0	0.002096	0	0
EPHB3	2049	broad.mit.edu	37	3	184295756	184295756	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:184295756C>T	uc003foz.2	+	8	2147	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	570	Helical; (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			GGCTTGTCTTCGTGGTGGCTG	0.622													27	47					0	0	0.003755	0	0
EPHB3	2049	broad.mit.edu	37	3	184297596	184297596	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:184297596G>A	uc003foz.2	+	11	2483	c.2046G>A	c.(2044-2046)GAG>GAA	p.E682E		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	682	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			TCCTAAGCGAGGCCTCCATCA	0.567													22	25					0	0	0.002299	0	0
MAP3K13	9175	broad.mit.edu	37	3	185146818	185146818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:185146818C>T	uc010hyf.2	+	3	715	c.449C>T	c.(448-450)TCC>TTC	p.S150F	MAP3K13_uc011brt.1_Intron|MAP3K13_uc003fph.3_Intron|MAP3K13_uc011bru.1_Intron|MAP3K13_uc003fpi.2_Missense_Mutation_p.S150F|MAP3K13_uc010hyg.2_5'UTR	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	150					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			AAGGCATATTCCACTGATTAC	0.443													15	16					0	0	0.004007	0	0
LIPH	200879	broad.mit.edu	37	3	185234906	185234906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:185234906G>A	uc003fpm.2	-	7	1041	c.931C>T	c.(931-933)CCT>TCT	p.P311S	LIPH_uc010hyh.2_Missense_Mutation_p.P277S	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	311					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GTCATTGGAGGATCTTTCCCC	0.383													173	239					0	0	0.003610	0	0
IGF2BP2	10644	broad.mit.edu	37	3	185364881	185364881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:185364881G>A	uc003fpo.2	-	15	1718	c.1639C>T	c.(1639-1641)CGT>TGT	p.R547C	IGF2BP2_uc010hyi.2_Missense_Mutation_p.R490C|IGF2BP2_uc010hyj.2_Missense_Mutation_p.R484C|IGF2BP2_uc010hyk.2_Missense_Mutation_p.R411C|IGF2BP2_uc010hyl.2_Missense_Mutation_p.R441C|IGF2BP2_uc003fpp.2_Missense_Mutation_p.R504C|IGF2BP2_uc003fpq.2_Missense_Mutation_p.R552C	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	547	KH 4.				anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			GTTTGGTCACGAGGCACGATG	0.532													143	201					0	0	0.003610	0	0
CRYGS	1427	broad.mit.edu	37	3	186257173	186257173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:186257173G>A	uc003fqe.2	-	2	287	c.235C>T	c.(235-237)CGC>TGC	p.R79C	CRYGS_uc003fqf.2_Missense_Mutation_p.R79C	NM_017541	NP_060011	P22914	CRBS_HUMAN	crystallin, gamma S	79	Beta/gamma crystallin 'Greek key' 2.						structural constituent of eye lens				0	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.5e-22)	GBM - Glioblastoma multiforme(93;0.0906)		GAGCTGAGGCGGTCGTTGAGG	0.537													9	18					0	0	0.004482	0	0
AHSG	197	broad.mit.edu	37	3	186336349	186336349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:186336349G>A	uc003fqk.3	+	5	679	c.598G>A	c.(598-600)GAG>AAG	p.E200K	AHSG_uc003fql.3_Missense_Mutation_p.E201K|AHSG_uc003fqm.3_Missense_Mutation_p.E199K|AHSG_uc010hyp.2_Missense_Mutation_p.E163K	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	200	Cystatin fetuin-A-type 2.				acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		TACCTATGTGGAGTTTACAGT	0.517													13	32					0	0	0.001855	0	0
AHSG	197	broad.mit.edu	37	3	186336351	186336351	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:186336351G>C	uc003fqk.3	+	5	681	c.600G>C	c.(598-600)GAG>GAC	p.E200D	AHSG_uc003fql.3_Missense_Mutation_p.E201D|AHSG_uc003fqm.3_Missense_Mutation_p.E199D|AHSG_uc010hyp.2_Missense_Mutation_p.E163D	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	200	Cystatin fetuin-A-type 2.				acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		CCTATGTGGAGTTTACAGTGT	0.517													12	34					0	0	0.001368	0	0
FETUB	26998	broad.mit.edu	37	3	186370278	186370278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:186370278G>A	uc010hyq.2	+	8	1268	c.1007G>A	c.(1006-1008)GGA>GAA	p.G336E	FETUB_uc011brz.1_Missense_Mutation_p.G188E|FETUB_uc003fqn.2_Missense_Mutation_p.G336E|FETUB_uc003fqo.2_Missense_Mutation_p.G231E|FETUB_uc010hyr.2_Missense_Mutation_p.G299E|FETUB_uc010hys.2_Missense_Mutation_p.G188E|FETUB_uc003fqp.3_Missense_Mutation_p.G271E	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	336						extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		AATCCCCAGGGAGAAACCCTG	0.517													27	62					0	0	0.002836	0	0
EIF4A2	1974	broad.mit.edu	37	3	186505599	186505599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:186505599G>A	uc003fqs.2	+	10	1046	c.1007G>A	c.(1006-1008)GGG>GAG	p.G336E	EIF4A2_uc003fqt.2_RNA|EIF4A2_uc003fqu.2_Missense_Mutation_p.G337E|EIF4A2_uc003fqv.2_Missense_Mutation_p.G241E|EIF4A2_uc003fqw.2_Missense_Mutation_p.G241E|EIF4A2_uc011bsb.1_3'UTR	NM_001967	NP_001958	Q14240	IF4A2_HUMAN	eukaryotic translation initiation factor 4A2	336	Helicase C-terminal.				interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|protein binding|translation initiation factor activity			ovary(2)|breast(2)	4	all_cancers(143;2.68e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.07e-20)	GBM - Glioblastoma multiforme(93;0.0704)		CAGGCTCGCGGGATTGATGTG	0.383			T	BCL6	NHL								27	42					0	0	0.005443	0	0
SST	6750	broad.mit.edu	37	3	187386908	187386908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:187386908C>T	uc003frn.2	-	2	418	c.296G>A	c.(295-297)CGA>CAA	p.R99Q		NM_001048	NP_001039	P61278	SMS_HUMAN	somatostatin preproprotein	99					digestion|G-protein coupled receptor protein signaling pathway|induction of apoptosis by hormones|negative regulation of cell proliferation|response to nutrient|synaptic transmission	extracellular space	hormone activity			pancreas(1)	1	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.00444)	Bromocriptine(DB01200)|Cysteamine(DB00847)	TTTGCGTTCTCGGGGTGCCAT	0.502													71	99					0	0	0.003610	0	0
RTP2	344892	broad.mit.edu	37	3	187416366	187416366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:187416366G>A	uc003fro.1	-	2	1027	c.598C>T	c.(598-600)CGC>TGC	p.R200C		NM_001004312	NP_001004312	Q5QGT7	RTP2_HUMAN	receptor transporting protein 2	200	Helical; (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding				0	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0515)		AGGCACCAGCGAAGAGACAAG	0.587													15	25					0	0	0.004990	0	0
BCL6	604	broad.mit.edu	37	3	187442795	187442795	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:187442795G>A	uc003frp.3	-	9	2368	c.1911C>T	c.(1909-1911)ACC>ACT	p.T637T	BCL6_uc011bsf.1_Silent_p.T581T|BCL6_uc010hza.2_Silent_p.T535T|BCL6_uc003frq.1_Silent_p.T637T	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	637	C2H2-type 5.				negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		GCCGGAAACGGGTGCCACAGA	0.552			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								22	40					0	0	0.001882	0	0
TP63	8626	broad.mit.edu	37	3	189455644	189455644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:189455644G>A	uc003fry.2	+	2	267	c.178G>A	c.(178-180)GAT>AAT	p.D60N	TP63_uc003frx.2_Missense_Mutation_p.D60N|TP63_uc003frz.2_Missense_Mutation_p.D60N|TP63_uc010hzc.1_Missense_Mutation_p.D60N	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	60	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GCATATCTGGGATTTTCTGGA	0.388									Hay-Wells_syndrome	HNSCC(45;0.13)			17	25					0	0	0.001523	0	0
CLDN1	9076	broad.mit.edu	37	3	190039947	190039948	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:190039947_190039948CC>TT	uc003fsh.2	-	1	268_269	c.48_49GG>AA	c.(46-51)CTGGGA>CTAAGA	p.G17R		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	17	Helical; (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		CCGATCCATCCCAGGAAGGCGA	0.663													15	25					0	0	0.004672	0	0
ATP13A4	84239	broad.mit.edu	37	3	193177020	193177020	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:193177020G>A	uc003ftd.2	-	14	1632	c.1524C>T	c.(1522-1524)GGC>GGT	p.G508G	ATP13A4_uc003fte.1_Silent_p.G508G|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Silent_p.G214G	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	508	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CTTCCTGAAAGCTTAAGGAGA	0.458													18	26					0	0	0.001216	0	0
LRRC15	131578	broad.mit.edu	37	3	194080236	194080236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:194080236C>T	uc003ftu.2	-	2	1623	c.1537G>A	c.(1537-1539)GAA>AAA	p.E513K	LRRC15_uc003ftt.2_Missense_Mutation_p.E519K	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	513	Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		GTGTAGTCTTCCACAGGGCTG	0.557													14	18					0	0	0.002450	0	0
ATP13A3	79572	broad.mit.edu	37	3	194174455	194174455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:194174455G>A	uc003fty.3	-	9	1220	c.818C>T	c.(817-819)TCA>TTA	p.S273L	ATP13A3_uc003ftz.1_5'Flank	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	273					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		TCTACAAACTGAAACTCTTAC	0.348													23	27					0	0	0.003330	0	0
MUC4	4585	broad.mit.edu	37	3	195474187	195474187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:195474187C>T	uc011bto.1	-	26	16175	c.15715G>A	c.(15715-15717)GAC>AAC	p.D5239N	MUC4_uc010hzq.2_Missense_Mutation_p.D224N|MUC4_uc003fuz.2_Missense_Mutation_p.D965N|MUC4_uc003fva.2_Missense_Mutation_p.D847N|MUC4_uc003fvb.2_Missense_Mutation_p.D883N|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.D883N|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Missense_Mutation_p.D847N|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.D931N|MUC4_uc011bti.1_Missense_Mutation_p.D931N|MUC4_uc011btj.1_Missense_Mutation_p.D1108N|MUC4_uc011btk.1_Missense_Mutation_p.D847N|MUC4_uc011btl.1_Missense_Mutation_p.D876N|MUC4_uc011btm.1_Missense_Mutation_p.D1056N|MUC4_uc011btn.1_Missense_Mutation_p.D847N|MUC4_uc003fvo.2_Missense_Mutation_p.D1131N|MUC4_uc003fvp.2_Missense_Mutation_p.D1080N	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	2124					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AAGAACGCGTCGAGTTTCATG	0.637													7	36					0	0	0.004482	0	0
MUC4	4585	broad.mit.edu	37	3	195516563	195516563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:195516563C>T	uc011bto.1	-	2	2348	c.1888G>A	c.(1888-1890)GAA>AAA	p.E630K	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.E512K	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	635					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GCTGGTGATTCCTGAGGAGAG	0.488													68	87					0	0	0.003610	0	0
LRRC33	375387	broad.mit.edu	37	3	196387622	196387622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:196387622C>T	uc003fwv.2	+	3	1212	c.1108C>T	c.(1108-1110)CGG>TGG	p.R370W		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	370	Extracellular (Potential).|LRR 12.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		GCTTCACATTCGGGAGCACGA	0.637													22	50					0	0	0.001882	0	0
MIR922	100126321	broad.mit.edu	37	3	197401437	197401437	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:197401437G>A	hsa-mir-922|MI0005714	-			c.11G>A			KIAA0226_uc003fyc.2_3'UTR|KIAA0226_uc003fyd.3_3'UTR																	0						CAGGGAGAGGGAAAACGCCAT	0.507													21	20					0	0	0.001216	0	0
KIAA0226	9711	broad.mit.edu	37	3	197432026	197432026	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:197432026A>G	uc003fyc.2	-	3	423	c.240T>C	c.(238-240)GAT>GAC	p.D80D	KIAA0226_uc003fyd.3_Silent_p.D20D|KIAA0226_uc003fyf.2_5'UTR|KIAA0226_uc003fyg.2_Silent_p.D73D	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	80	RUN.				autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		ACTGCCAGTAATCCGTCTGGC	0.542													12	12					0	0	0.003163	0	0
LMLN	89782	broad.mit.edu	37	3	197765453	197765453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:197765453C>T	uc011buo.1	+	16	1905	c.1883C>T	c.(1882-1884)TCC>TTC	p.S628F	LMLN_uc003fyt.2_Missense_Mutation_p.S613F|LMLN_uc010iar.2_Missense_Mutation_p.S665F|LMLN_uc010ias.2_Missense_Mutation_p.S576F|LMLN_uc003fyu.2_Missense_Mutation_p.S425F	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	628					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		TGTTCCTGTTCCTCGAGCCTG	0.403													69	125					0	0	0.003610	0	0
PDE6B	5158	broad.mit.edu	37	4	628613	628613	+	Missense_Mutation	SNP	G	A	A	rs140444984		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:628613G>A	uc003gap.2	+	2	669	c.616G>A	c.(616-618)GAA>AAA	p.E206K	PDE6B_uc003gao.3_Missense_Mutation_p.E206K	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	206	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CAGCGAAGACGAAGATGTGAG	0.393													18	24					0	0	0.001882	0	0
MAEA	10296	broad.mit.edu	37	4	1309241	1309241	+	Silent	SNP	C	T	T	rs141399202	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:1309241C>T	uc003gda.2	+	3	339	c.309C>T	c.(307-309)ATC>ATT	p.I103I	MAEA_uc010ibs.1_Silent_p.I103I|MAEA_uc003gdb.2_Silent_p.I103I|MAEA_uc011bvb.1_Intron|MAEA_uc003gdc.2_Silent_p.I103I|MAEA_uc003gdd.2_RNA|MAEA_uc011bvc.1_Silent_p.I102I|MAEA_uc011bvd.1_Silent_p.I55I|MAEA_uc010ibt.2_5'UTR	NM_001017405	NP_001017405	Q7L5Y9	MAEA_HUMAN	macrophage erythroblast attacher isoform 1	103	Extracellular and involved in cell to cell contact.				cell adhesion|cell cycle|cell division|erythrocyte maturation|negative regulation of myeloid cell apoptosis|regulation of mitotic cell cycle	actomyosin contractile ring|integral to plasma membrane|membrane fraction|nuclear matrix|spindle	actin binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(23;0.0201)			AGCGCCGGATCGAGCACCTCA	0.642													27	33					0	0	0.001786	0	0
MAEA	10296	broad.mit.edu	37	4	1309274	1309274	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:1309274C>T	uc003gda.2	+	3	372	c.342C>T	c.(340-342)CCC>CCT	p.P114P	MAEA_uc010ibs.1_Silent_p.P114P|MAEA_uc003gdb.2_Silent_p.P114P|MAEA_uc011bvb.1_Intron|MAEA_uc003gdc.2_Silent_p.P114P|MAEA_uc003gdd.2_RNA|MAEA_uc011bvc.1_Silent_p.P113P|MAEA_uc011bvd.1_Silent_p.P66P|MAEA_uc010ibt.2_5'UTR	NM_001017405	NP_001017405	Q7L5Y9	MAEA_HUMAN	macrophage erythroblast attacher isoform 1	114	Extracellular and involved in cell to cell contact.				cell adhesion|cell cycle|cell division|erythrocyte maturation|negative regulation of myeloid cell apoptosis|regulation of mitotic cell cycle	actomyosin contractile ring|integral to plasma membrane|membrane fraction|nuclear matrix|spindle	actin binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(23;0.0201)			GCGACCAGCCCGCGGCGGCCA	0.647													21	32					0	0	0.002780	0	0
LETM1	3954	broad.mit.edu	37	4	1843241	1843241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:1843241G>A	uc003gdv.2	-	3	724	c.427C>T	c.(427-429)CCC>TCC	p.P143S	LETM1_uc010icc.2_5'Flank|LETM1_uc011bvg.1_Missense_Mutation_p.P143S	NM_012318	NP_036450	O95202	LETM1_HUMAN	leucine zipper-EF-hand containing transmembrane	143	Mitochondrial intermembrane (Potential).				cristae formation	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			central_nervous_system(1)	1			all cancers(2;0.00756)|OV - Ovarian serous cystadenocarcinoma(23;0.00989)|Epithelial(3;0.0141)			TCTGCGGGGGGGCTGTACACC	0.597													13	16					0	0	0.001368	0	0
POLN	353497	broad.mit.edu	37	4	2160913	2160913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:2160913G>A	uc003ger.2	-	12	1580	c.1580C>T	c.(1579-1581)CCA>CTA	p.P527L	POLN_uc010icg.1_5'UTR|POLN_uc010ich.1_Intron|POLN_uc011bvi.1_Missense_Mutation_p.P527L	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	527					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			CTTGGGTAATGGATGAAGGTC	0.358								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					25	52					0	0	0.004289	0	0
C4orf44	345222	broad.mit.edu	37	4	3251199	3251199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:3251199G>A	uc003ggs.2	+	1	433	c.250G>A	c.(250-252)GAG>AAG	p.E84K	C4orf44_uc003ggt.2_Missense_Mutation_p.E84K	NM_001042690	NP_001036155	Q6ZTZ1	CD044_HUMAN	hypothetical protein LOC345222 isoform a	84											0						CAAGCTCTTCGAGATGACCGG	0.607													7	19					0	0	0.001984	0	0
CRMP1	1400	broad.mit.edu	37	4	5830308	5830308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:5830308C>T	uc003gip.2	-	13	1470	c.1369G>A	c.(1369-1371)GGA>AGA	p.G457R	EVC_uc003gim.1_RNA|CRMP1_uc003gin.1_Missense_Mutation_p.G369R|CRMP1_uc003giq.2_Missense_Mutation_p.G457R|CRMP1_uc003gir.2_Missense_Mutation_p.G452R|CRMP1_uc003gis.2_Missense_Mutation_p.G571R	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	457					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		TTGATGTTTCCGTCTTCAAAG	0.562													9	15					0	0	0.000673	0	0
WFS1	7466	broad.mit.edu	37	4	6303634	6303634	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:6303634C>T	uc003giy.2	+	8	2278	c.2112C>T	c.(2110-2112)TTC>TTT	p.F704F	WFS1_uc003gix.2_Silent_p.F704F|WFS1_uc003giz.2_Silent_p.F522F	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	704					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		CCGGCCGCTTCAAGTACGTCC	0.652													50	100					0	0	0.003610	0	0
KIAA0232	9778	broad.mit.edu	37	4	6865634	6865634	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:6865634C>T	uc003gjr.3	+	7	3988	c.3525C>T	c.(3523-3525)TTC>TTT	p.F1175F	KIAA0232_uc003gjq.3_Silent_p.F1175F	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	1175							ATP binding			ovary(2)	2						CTGGAAAATTCCTTCCCAGGT	0.413													28	43					0	0	0.001786	0	0
SORCS2	57537	broad.mit.edu	37	4	7725424	7725424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:7725424G>A	uc003gkb.3	+	19	2425	c.2425G>A	c.(2425-2427)GGT>AGT	p.G809S	SORCS2_uc011bwi.1_Missense_Mutation_p.G637S	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	809	PKD.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						TTCTCTGCAGGGTGATGTCCT	0.483													29	41					0	0	0.002096	0	0
ACOX3	8310	broad.mit.edu	37	4	8390952	8390952	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:8390952G>A	uc010idk.2	-	13	1630	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I	ACOX3_uc003glc.3_Silent_p.I495I|ACOX3_uc003gld.3_Silent_p.I495I|ACOX3_uc003gle.1_Silent_p.I400I	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	495					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						TCTGGTCAAGGATGCCGGGAT	0.547													15	14					0	0	0.000958	0	0
DRD5	1816	broad.mit.edu	37	4	9784716	9784716	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:9784716A>G	uc003gmb.3	+	1	1459	c.1063A>G	c.(1063-1065)AAC>GAC	p.N355D		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	355	Helical; Name=7; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CTCCTCACTCAACCCCGTCAT	0.627													15	24					0	0	0.003163	0	0
DRD5	1816	broad.mit.edu	37	4	9784938	9784938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:9784938G>A	uc003gmb.3	+	1	1681	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	429	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GGACAACGACGAGGAGGAGGG	0.577													23	31					0	0	0.004656	0	0
DRD5	1816	broad.mit.edu	37	4	9785024	9785024	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:9785024G>A	uc003gmb.3	+	1	1767	c.1371G>A	c.(1369-1371)CTG>CTA	p.L457L		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	457	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TCTGGGAGCTGGACTGCGAGG	0.502													26	31					0	0	0.001786	0	0
LDB2	9079	broad.mit.edu	37	4	16597475	16597476	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:16597475_16597476GG>AA	uc003goz.2	-	3	574_575	c.258_259CC>TT	c.(256-261)CCCCGT>CCTTGT	p.R87C	LDB2_uc003gpa.2_Missense_Mutation_p.R87C|LDB2_uc003gpb.2_Missense_Mutation_p.R87C|LDB2_uc011bxh.1_Missense_Mutation_p.R87C|LDB2_uc010iee.2_Missense_Mutation_p.R87C|LDB2_uc003goy.2_5'UTR|LDB2_uc011bxi.1_5'UTR	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	87							LIM domain binding|transcription cofactor activity				0						CTAAAGTAACGGGGGATGAGGG	0.485													10	21					0	0	0.004672	0	0
DCAF16	54876	broad.mit.edu	37	4	17805433	17805433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:17805433G>A	uc003gpn.2	-	3	1393	c.332C>T	c.(331-333)CCT>CTT	p.P111L	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	111						CUL4 RING ubiquitin ligase complex				ovary(1)	1						GGGCCATTCAGGAATTGGTTC	0.498													58	78					0	0	0.003610	0	0
SLIT2	9353	broad.mit.edu	37	4	20598237	20598237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:20598237C>T	uc003gpr.1	+	32	3724	c.3520C>T	c.(3520-3522)CCT>TCT	p.P1174S	SLIT2_uc003gps.1_Missense_Mutation_p.P1166S	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1174	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TCTTCAGATTCCTTCAGCCAA	0.388													21	14					0	0	0.001216	0	0
SLIT2	9353	broad.mit.edu	37	4	20620554	20620554	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:20620554C>T	uc003gpr.1	+	37	4716	c.4512C>T	c.(4510-4512)TTC>TTT	p.F1504F	SLIT2_uc003gps.1_Silent_p.F1496F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1504	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AATACTCTTTCGAATGCACTG	0.567													16	18					0	0	0.004007	0	0
CCDC149	91050	broad.mit.edu	37	4	24833249	24833249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:24833249G>A	uc011bxr.1	-	10	988	c.844C>T	c.(844-846)CAT>TAT	p.H282Y	CCDC149_uc003grc.2_Missense_Mutation_p.H282Y|CCDC149_uc003grb.2_RNA|CCDC149_uc003grd.2_Intron|CCDC149_uc003gre.2_Missense_Mutation_p.H227Y|CCDC149_uc011bxq.1_Missense_Mutation_p.H155Y	NM_173463	NP_775734	B4DZG3	B4DZG3_HUMAN	coiled-coil domain containing 149 isoform 1	282											0		Breast(46;0.173)				CTGCATCCATGATCCTCAGAT	0.443													17	22					0	0	0.000743	0	0
LGI2	55203	broad.mit.edu	37	4	25005151	25005151	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:25005151C>T	uc003grf.2	-	8	1659	c.1560G>A	c.(1558-1560)AGG>AGA	p.R520R		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	520	EAR 7.					extracellular region					0		Breast(46;0.173)				AGAAATCTCTCCTGTCGGTGG	0.398													21	29					0	0	0.001216	0	0
SLC34A2	10568	broad.mit.edu	37	4	25676244	25676244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:25676244C>T	uc003grr.2	+	12	1532	c.1451C>T	c.(1450-1452)TCA>TTA	p.S484L	SLC34A2_uc003grs.2_Missense_Mutation_p.S483L|SLC34A2_uc010iev.2_Missense_Mutation_p.S483L	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	484	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TTGAGGAGTTCACTCCAGGTC	0.547													31	54					0	0	0.001786	0	0
SEL1L3	23231	broad.mit.edu	37	4	25821492	25821492	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:25821492A>G	uc003gru.3	-	8	1513	c.1361T>C	c.(1360-1362)GTT>GCT	p.V454A		NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	454						integral to membrane	binding				0						TATTTCTTGAACCTCAGCACA	0.418													6	18					0	0	0.001168	0	0
CCKAR	886	broad.mit.edu	37	4	26487489	26487489	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:26487489C>T	uc003gse.1	-	3	549	c.396G>A	c.(394-396)CTG>CTA	p.L132L		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	132	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	ATATGGCTACCAGATTAAAGG	0.443													12	16					0	0	0.001368	0	0
ARAP2	116984	broad.mit.edu	37	4	36160466	36160466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:36160466G>A	uc003gsq.1	-	15	2976	c.2638C>T	c.(2638-2640)CAT>TAT	p.H880Y		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	880	PH 3.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCCTCGGAATGAATATCATGT	0.333													16	30					0	0	0.000743	0	0
ARAP2	116984	broad.mit.edu	37	4	36214091	36214091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:36214091C>T	uc003gsq.1	-	5	1398	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	ARAP2_uc003gsr.1_Missense_Mutation_p.E354K	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	354					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GTCAAAAATTCATTCTTTATA	0.338													9	20					0	0	0.000978	0	0
ARAP2	116984	broad.mit.edu	37	4	36230380	36230380	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:36230380G>A	uc003gsq.1	-	2	1067	c.729C>T	c.(727-729)TCC>TCT	p.S243S	ARAP2_uc003gsr.1_Silent_p.S243S	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	243					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TAAAGAATGGGGATGGTGGTG	0.388													31	64					0	0	0.001786	0	0
TBC1D1	23216	broad.mit.edu	37	4	38016231	38016231	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:38016231C>T	uc003gtb.2	+	3	862	c.519C>T	c.(517-519)TTC>TTT	p.F173F	TBC1D1_uc011byd.1_Silent_p.F173F|TBC1D1_uc010ifd.2_Intron|TBC1D1_uc011byf.1_Silent_p.F44F	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	173						nucleus	Rab GTPase activator activity			ovary(1)	1						CCAAGAAGTTCGAGGTGCTCT	0.627													46	60					0	0	0.003610	0	0
TLR10	81793	broad.mit.edu	37	4	38774959	38774959	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:38774959T>A	uc003gti.2	-	2	2632	c.2253A>T	c.(2251-2253)AAA>AAT	p.K751N	TLR10_uc003gtj.2_Missense_Mutation_p.K751N|TLR10_uc003gtk.2_Missense_Mutation_p.K751N	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	751	TIR.|Cytoplasmic (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						AGTATGCTTTTTTTTCCAGGA	0.393													32	33					0	0	0.003271	0	0
TMEM156	80008	broad.mit.edu	37	4	38995416	38995416	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:38995416G>A	uc003gto.2	-	3	669	c.561C>T	c.(559-561)ATC>ATT	p.I187I	TMEM156_uc010ifj.2_Silent_p.I187I	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	187	Extracellular (Potential).					integral to membrane				skin(1)	1						GGTATTCCATGATTCTACAAG	0.353													41	68					0	0	0.002522	0	0
RFC1	5981	broad.mit.edu	37	4	39308225	39308225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:39308225G>A	uc003gty.1	-	14	2119	c.1985C>T	c.(1984-1986)TCC>TTC	p.S662F	RFC1_uc003gtx.1_Missense_Mutation_p.S661F	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	662					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						ACACACCAGGGAAGCTGTGGT	0.512													10	17					0	0	0.000978	0	0
KLB	152831	broad.mit.edu	37	4	39448354	39448354	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:39448354T>C	uc003gua.2	+	4	2105	c.2008T>C	c.(2008-2010)TTC>CTC	p.F670L	KLB_uc011byj.1_Missense_Mutation_p.F661L	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	670	Extracellular (Potential).|Glycosyl hydrolase-1 2.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						GGCCGAGGCCTTCCAGGCCTA	0.627													9	22					0	0	0.000443	0	0
LOC401127	401127	broad.mit.edu	37	4	39482590	39482590	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:39482590C>T	uc011byn.1	+	1		c.716C>T			LOC401127_uc011byo.1_RNA	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						AGACTGCTAGCTCACTCCGAT	0.463													14	16					0	0	0.004990	0	0
PDS5A	23244	broad.mit.edu	37	4	39871032	39871032	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:39871032G>A	uc003guv.3	-	22	3027	c.2487C>T	c.(2485-2487)TCC>TCT	p.S829S	PDS5A_uc010ifo.2_Silent_p.S789S	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	829					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						GTACTTCAGGGGAAACCTCTT	0.303													60	105					0	0	0.003610	0	0
N4BP2	55728	broad.mit.edu	37	4	40119499	40119499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:40119499C>T	uc003guy.3	+	8	2013	c.1675C>T	c.(1675-1677)CAT>TAT	p.H559Y	N4BP2_uc010ifq.2_Missense_Mutation_p.H479Y|N4BP2_uc010ifr.2_Missense_Mutation_p.H479Y	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	559						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						GCGTAACATTCATGGGGTAAG	0.308													36	30					0	0	0.004878	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356372	40356372	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:40356372G>A	uc003gva.1	+	5	1291	c.1275G>A	c.(1273-1275)ACG>ACA	p.T425T		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	425	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	AAGTGCTGACGAGGAATATTG	0.498													17	24					0	0	0.000743	0	0
APBB2	323	broad.mit.edu	37	4	41015685	41015685	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:41015685G>A	uc003gvl.2	-	6	1380	c.750C>T	c.(748-750)ATC>ATT	p.I250I	APBB2_uc003gvm.2_Silent_p.I250I|APBB2_uc003gvn.2_Silent_p.I250I|APBB2_uc011byt.1_Silent_p.I233I	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	250					cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						CCAGGTTCTGGATCCGGTGCA	0.587													86	115					0	0	0.003610	0	0
LIMCH1	22998	broad.mit.edu	37	4	41621241	41621241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:41621241G>A	uc003gvu.3	+	8	773	c.719G>A	c.(718-720)CGG>CAG	p.R240Q	LIMCH1_uc003gvt.1_Missense_Mutation_p.R81Q|LIMCH1_uc003gvv.3_Missense_Mutation_p.R240Q|LIMCH1_uc003gvw.3_Missense_Mutation_p.R240Q|LIMCH1_uc003gvx.3_Missense_Mutation_p.R240Q|LIMCH1_uc003gwe.3_Missense_Mutation_p.R240Q|LIMCH1_uc003gvy.3_Missense_Mutation_p.R81Q|LIMCH1_uc003gwa.3_Missense_Mutation_p.R81Q|LIMCH1_uc003gvz.3_Missense_Mutation_p.R81Q|LIMCH1_uc011byu.1_Missense_Mutation_p.R86Q|LIMCH1_uc003gwc.3_Missense_Mutation_p.R86Q|LIMCH1_uc003gwd.3_Missense_Mutation_p.R86Q|LIMCH1_uc011byv.1_5'UTR|LIMCH1_uc003gwb.1_Missense_Mutation_p.R88Q	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	240					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TTGCCTCATCGGAAGCTGCCA	0.507													90	136					0	0	0.003610	0	0
BEND4	389206	broad.mit.edu	37	4	42119748	42119748	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:42119748G>A	uc003gwn.2	-	6	1972	c.1392C>T	c.(1390-1392)TTC>TTT	p.F464F	BEND4_uc003gwm.2_Missense_Mutation_p.H441Y	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	464	BEN.										0						GCATCCTAATGAATTCTGCAG	0.468													10	6					0	0	0.000673	0	0
SHISA3	152573	broad.mit.edu	37	4	42403085	42403085	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:42403085C>T	uc003gwp.2	+	2	552	c.334C>T	c.(334-336)CTG>TTG	p.L112L		NM_001080505	NP_001073974	A0PJX4	SHSA3_HUMAN	shisa homolog 3 precursor	112	Helical; (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|skin(1)	2						GTTCATCATCCTGGGCTCTGT	0.502													49	87					0	0	0.003610	0	0
KCTD8	386617	broad.mit.edu	37	4	44177190	44177190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:44177190C>T	uc003gwu.2	-	2	1323	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	347						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						GTCCCACTTTCACTTCCTTTA	0.448										HNSCC(17;0.042)			19	34					0	0	0.000743	0	0
GABRA2	2555	broad.mit.edu	37	4	46252598	46252598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:46252598C>T	uc003gxc.3	-	9	1756	c.1083G>A	c.(1081-1083)ATG>ATA	p.M361I	GABRA2_uc010igc.2_Missense_Mutation_p.M361I|GABRA2_uc011bzc.1_Missense_Mutation_p.M366I	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	361	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGTTCTGTATCATAACGGAAG	0.398													35	46					0	0	0.004878	0	0
GABRB1	2560	broad.mit.edu	37	4	47408899	47408899	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:47408899C>T	uc003gxh.2	+	8	1410	c.1036C>T	c.(1036-1038)CAG>TAG	p.Q346*	GABRB1_uc011bze.1_Nonsense_Mutation_p.Q276*	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	346	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CAAACAAGACCAGAGTGCCAA	0.373													18	22					0	0	0.004990	0	0
CORIN	10699	broad.mit.edu	37	4	47625725	47625725	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:47625725C>T	uc003gxm.2	-	19	2496	c.2403G>A	c.(2401-2403)AGG>AGA	p.R801R	CORIN_uc011bzf.1_Silent_p.R662R|CORIN_uc011bzg.1_Silent_p.R734R	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	801	Extracellular (Potential).|SRCR.	Cleavage (Probable).		R->A: Loss of activity towards NPPA.	peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CTCCAAGGATCCTTTTGTTCA	0.542													23	48					0	0	0.004656	0	0
CORIN	10699	broad.mit.edu	37	4	47647108	47647108	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:47647108C>T	uc003gxm.2	-	14	2040	c.1947G>A	c.(1945-1947)GAG>GAA	p.E649E	CORIN_uc011bzf.1_Silent_p.E510E|CORIN_uc011bzg.1_Silent_p.E582E|CORIN_uc011bzh.1_Silent_p.E612E	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	649	Extracellular (Potential).|LDL-receptor class A 6.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						AGCAGTTTTTCTCGTCCATGT	0.378													32	53					0	0	0.002096	0	0
CNGA1	1259	broad.mit.edu	37	4	47939397	47939397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:47939397C>T	uc003gxt.3	-	11	1380	c.1114G>A	c.(1114-1116)GAT>AAT	p.D372N	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.D441N	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	372	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						TACTCAGAATCCCTCACGGGA	0.418													64	99					0	0	0.003610	0	0
TEC	7006	broad.mit.edu	37	4	48169925	48169925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:48169925C>T	uc003gxz.2	-	7	632	c.541G>A	c.(541-543)GAA>AAA	p.E181K		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	181	SH3.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						ACGATTTCTTCACTATTATCT	0.383													35	47					0	0	0.001287	0	0
OCIAD2	132299	broad.mit.edu	37	4	48894836	48894836	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:48894836A>T	uc003gyt.2	-	6	539	c.336T>A	c.(334-336)TTT>TTA	p.F112L	OCIAD2_uc003gyu.2_Intron	NM_001014446	NP_001014446	Q56VL3	OCAD2_HUMAN	OCIA domain containing 2 isoform 1	112	OCIA.					endosome					0						GATCTTCAAAAAAATGGAATT	0.398													71	102					0	0	0.003610	0	0
CWH43	80157	broad.mit.edu	37	4	48990612	48990612	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:48990612C>T	uc003gyv.2	+	2	344	c.162C>T	c.(160-162)TTC>TTT	p.F54F	CWH43_uc011bzl.1_Silent_p.F27F	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	54	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						CTCCAATATTCCTAACAATTA	0.368													20	28					0	0	0.000958	0	0
PDGFRA	5156	broad.mit.edu	37	4	55151583	55151583	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:55151583T>C	uc003han.3	+	17	2700	c.2369T>C	c.(2368-2370)CTT>CCT	p.L790P	PDGFRA_uc003haa.2_Missense_Mutation_p.L550P	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	790	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TCAGAAGGCCTTACTTTATTG	0.398			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			36	50					0	0	0.001706	0	0
PDGFRA	5156	broad.mit.edu	37	4	55154975	55154975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:55154975C>T	uc003han.3	+	20	3015	c.2684C>T	c.(2683-2685)CCT>CTT	p.P895L	PDGFRA_uc003haa.2_Missense_Mutation_p.P655L	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	895	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GGTGGCACCCCTTACCCCGGC	0.468			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			17	32					0	0	0.000743	0	0
PDCL2	132954	broad.mit.edu	37	4	56428590	56428590	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:56428590C>T	uc003hbb.2	-	5	655	c.552G>A	c.(550-552)GGG>GGA	p.G184G		NM_152401	NP_689614	Q8N4E4	PDCL2_HUMAN	phosducin-like 2	184											0	Lung NSC(11;0.00256)|Glioma(25;0.08)|all_epithelial(27;0.0863)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.69e-07)|Lung(4;1.03e-06)|Epithelial(7;0.00669)			TGAGATTTATCCCTCCACATT	0.323													14	44					0	0	0.004007	0	0
EXOC1	55763	broad.mit.edu	37	4	56726626	56726626	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:56726626C>T	uc003hbe.1	+	3	332	c.174C>T	c.(172-174)TCC>TCT	p.S58S	EXOC1_uc003hbf.1_Silent_p.S58S|EXOC1_uc003hbg.1_Silent_p.S58S	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	58					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					TCAAGAAATCCGATAAGGGAG	0.418													28	26					0	0	0.001271	0	0
AASDH	132949	broad.mit.edu	37	4	57215960	57215960	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:57215960G>A	uc003hbn.2	-	11	2110	c.1957C>T	c.(1957-1959)CAA>TAA	p.Q653*	AASDH_uc010ihb.2_Nonsense_Mutation_p.Q168*|AASDH_uc011caa.1_Nonsense_Mutation_p.Q500*|AASDH_uc003hbo.2_Nonsense_Mutation_p.Q553*|AASDH_uc011cab.1_Nonsense_Mutation_p.Q168*|AASDH_uc010ihc.2_Nonsense_Mutation_p.Q653*|AASDH_uc003hbp.2_Nonsense_Mutation_p.Q653*	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	653					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				GCTTCCTCTTGATTAATGTCG	0.398													70	104					0	0	0.003610	0	0
LPHN3	23284	broad.mit.edu	37	4	62812733	62812733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:62812733C>T	uc010ihh.2	+	13	2490	c.2317C>T	c.(2317-2319)CAT>TAT	p.H773Y	LPHN3_uc003hcq.3_Missense_Mutation_p.H773Y|LPHN3_uc003hct.2_Missense_Mutation_p.H166Y	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	760	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						GTCCACAAATCATTCTGTTAT	0.398													89	99					0	0	0.003610	0	0
UBA6	55236	broad.mit.edu	37	4	68500030	68500030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:68500030G>A	uc003hdg.3	-	22	1995	c.1943C>T	c.(1942-1944)TCC>TTC	p.S648F		NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	648					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						GTGGGAAAAGGAACTTTCAAA	0.269													27	44					0	0	0.002445	0	0
GNRHR	2798	broad.mit.edu	37	4	68606325	68606325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:68606325C>T	uc003hdn.2	-	3	2611	c.860G>A	c.(859-861)GGA>GAA	p.G287E	LOC550112_uc003hdl.3_Intron|GNRHR_uc003hdm.2_Silent_p.R244R|uc003hdo.1_5'Flank	NM_000406	NP_000397	P30968	GNRHR_HUMAN	gonadotropin-releasing hormone receptor isoform	287	Helical; Name=6; (Potential).				multicellular organismal development	integral to plasma membrane	gonadotropin-releasing hormone receptor activity			ovary(1)	1					Abarelix(DB00106)|Cetrorelix(DB00050)|Danazol(DB01406)|Gonadorelin(DB00644)|Leuprolide(DB00007)|Nafarelin(DB00666)	ATACCAAATTCCTAGGACATA	0.403													69	112					0	0	0.003610	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69095023	69095023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:69095023C>T	uc003hdw.3	-	8	1034	c.898G>A	c.(898-900)GAA>AAA	p.E300K		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	300	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TTGTCATTTTCTGAGAGCTTC	0.343													29	51					0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	4	69343242	69343242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:69343242C>T	uc003hdz.3	+	8	927	c.863C>T	c.(862-864)CCC>CTC	p.P288L		NM_014058	NP_054777			transmembrane protease, serine 11E																		AGCCCTGTTCCCTACACAAAT	0.408													92	127					0	0	0.003610	0	0
UGT2A3	79799	broad.mit.edu	37	4	69795577	69795577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:69795577G>A	uc003hef.2	-	6	1569	c.1538C>T	c.(1537-1539)TCC>TTC	p.S513F	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	513	Cytoplasmic (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTTTTGACAGGAAAATAAAAA	0.383													24	35					0	0	0.002299	0	0
UGT2A3	79799	broad.mit.edu	37	4	69796438	69796439	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:69796438_69796439CC>TT	uc003hef.2	-	5	1160_1161	c.1129_1130GG>AA	c.(1129-1131)GGG>AAG	p.G377K	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	377	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTCATAGATCCCATTCATTCCA	0.386													19	24					0	0	0.004672	0	0
UGT2A3	79799	broad.mit.edu	37	4	69817021	69817021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:69817021G>A	uc003hef.2	-	1	489	c.458C>T	c.(457-459)CCC>CTC	p.P153L	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	153	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GTCTCCACAGGGAATCACAGG	0.433													20	26					0	0	0.002780	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885776	69885776	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:69885776A>G	uc011cao.1	-	4	349	c.213T>C	c.(211-213)TTT>TTC	p.F71F	UGT2B10_uc011can.1_Silent_p.F71F			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	108					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GTTCTTGTGAAAAATATAACC	0.289													11	19					0	0	0.000673	0	0
CSN1S1	1446	broad.mit.edu	37	4	70804900	70804900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:70804900G>A	uc003hep.1	+	10	299	c.250G>A	c.(250-252)GAA>AAA	p.E84K	CSN1S1_uc003heq.1_Missense_Mutation_p.E83K|CSN1S1_uc003her.1_Missense_Mutation_p.E84K	NM_001890	NP_001881	P47710	CASA1_HUMAN	casein alpha s1 isoform 1	84						extracellular region	protein binding|transporter activity				0						TTAGAAGATGGAATCCAGCAT	0.328													35	62					0	0	0.002222	0	0
CSN2	1447	broad.mit.edu	37	4	70823080	70823080	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:70823080A>T	uc003hes.3	-	5	600	c.587T>A	c.(586-588)CTT>CAT	p.L196H	CSN2_uc003het.3_Missense_Mutation_p.L195H	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	196					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						GTTGAGCAGAAGGGCTTGAAC	0.547													19	17					0	0	0.000958	0	0
CSN2	1447	broad.mit.edu	37	4	70823160	70823160	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:70823160C>T	uc003hes.3	-	5	520	c.507G>A	c.(505-507)TGG>TGA	p.W169*	CSN2_uc003het.3_Nonsense_Mutation_p.W168*	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	169					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						GAGGAACAGACCACAGGGGCT	0.562													13	19					0	0	0.001368	0	0
HTN1	3346	broad.mit.edu	37	4	70918796	70918796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:70918796G>A	uc003hex.2	+	2	70	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_002159	NP_002150	P15515	HIS1_HUMAN	histatin 1 precursor	1					biomineral tissue development|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			skin(1)	1						AGCCAACTATGAAGTTTTTTG	0.313													16	29					0	0	0.000743	0	0
HTN1	3346	broad.mit.edu	37	4	70920148	70920148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:70920148G>A	uc003hex.2	+	4	150	c.83G>A	c.(82-84)GGG>GAG	p.G28E		NM_002159	NP_002150	P15515	HIS1_HUMAN	histatin 1 precursor	28					biomineral tissue development|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			skin(1)	1						AGACATCATGGGTATAGAAGA	0.274													9	32					0	0	0.004482	0	0
C4orf7	260436	broad.mit.edu	37	4	71099792	71099792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:71099792C>T	uc003hfd.2	+	4	231	c.146C>T	c.(145-147)CCA>CTA	p.P49L		NM_152997	NP_694542	Q8NFU4	FDSCP_HUMAN	chromosome 4 open reading frame 7 precursor	49	Pro-rich.					extracellular region				central_nervous_system(1)	1						TACCCATATCCATTTCGCCCA	0.393													46	100					0	0	0.003610	0	0
C4orf7	260436	broad.mit.edu	37	4	71099797	71099797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:71099797C>T	uc003hfd.2	+	4	236	c.151C>T	c.(151-153)CGC>TGC	p.R51C		NM_152997	NP_694542	Q8NFU4	FDSCP_HUMAN	chromosome 4 open reading frame 7 precursor	51	Pro-rich.					extracellular region				central_nervous_system(1)	1						ATATCCATTTCGCCCACTTCC	0.403													71	74					0	0	0.003610	0	0
SMR3A	26952	broad.mit.edu	37	4	71232589	71232589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:71232589C>T	uc003hfg.1	+	3	364	c.283C>T	c.(283-285)CCT>TCT	p.P95S	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	95	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				ACACTCTCTTCCTCCTCCTTA	0.532													25	36					0	0	0.005443	0	0
MUC7	4589	broad.mit.edu	37	4	71346675	71346675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:71346675C>T	uc011cat.1	+	4	502	c.214C>T	c.(214-216)CCT>TCT	p.P72S	MUC7_uc011cau.1_Missense_Mutation_p.P72S|MUC7_uc003hfj.2_Missense_Mutation_p.P72S|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	72						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACGCTGTAGGCCTAAGCTTCC	0.448													46	46					0	0	0.003214	0	0
MUC7	4589	broad.mit.edu	37	4	71347006	71347006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:71347006C>T	uc011cat.1	+	4	833	c.545C>T	c.(544-546)TCC>TTC	p.S182F	MUC7_uc011cau.1_Missense_Mutation_p.S182F|MUC7_uc003hfj.2_Missense_Mutation_p.S182F|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	182	1.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CCACCATCTTCCTCAGCTCCA	0.567													28	46					0	0	0.002836	0	0
ENAM	10117	broad.mit.edu	37	4	71500179	71500179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:71500179C>T	uc011caw.1	+	6	646	c.365C>T	c.(364-366)ACC>ATC	p.T122I		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	122					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			ACCCAAGAAACCCAGAAACCC	0.517													24	27					0	0	0.002299	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013000	73013000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:73013000C>T	uc003hgg.2	+	4	1138	c.1040C>T	c.(1039-1041)TCA>TTA	p.S347L	NPFFR2_uc010iig.1_Missense_Mutation_p.S129L|NPFFR2_uc003hgi.2_Missense_Mutation_p.S248L|NPFFR2_uc003hgh.2_Missense_Mutation_p.S245L|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	347	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			ATTGGAATTTCACTCTTCAGG	0.488													17	34					0	0	0.001216	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73148898	73148898	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:73148898G>A	uc003hgk.1	-	22	3610	c.3573C>T	c.(3571-3573)ATC>ATT	p.I1191I		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1191					collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGTTGTCAATGATCTTTCCAT	0.438													52	59					0	0	0.003610	0	0
ALB	213	broad.mit.edu	37	4	74274503	74274503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:74274503G>A	uc003hgs.3	+	4	536	c.463G>A	c.(463-465)GAA>AAA	p.E155K	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_Intron|ALB_uc003hgt.3_Missense_Mutation_p.E155K|ALB_uc010iii.2_Intron|ALB_uc003hgu.3_Intron|ALB_uc003hgv.3_Intron|ALB_uc011cbf.1_Missense_Mutation_p.E45K|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	155	Albumin 1.			E -> Q (in Ref. 18; AA sequence).	bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TCATGACAATGAAGAGACATT	0.368													11	17					0	0	0.000978	0	0
ALB	213	broad.mit.edu	37	4	74279335	74279335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:74279335G>A	uc003hgs.3	+	8	1115	c.1042G>A	c.(1042-1044)GAT>AAT	p.D348N	ALB_uc003hgw.3_Missense_Mutation_p.D156N|ALB_uc011cbe.1_Missense_Mutation_p.D27N|ALB_uc003hgt.3_Missense_Mutation_p.D348N|ALB_uc010iii.2_Missense_Mutation_p.D233N|ALB_uc003hgu.3_Missense_Mutation_p.D198N|ALB_uc003hgv.3_Missense_Mutation_p.D27N|ALB_uc011cbf.1_Missense_Mutation_p.D238N|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Missense_Mutation_p.D27N	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	348	Albumin 2.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TGAGGCAAAGGATGTCTTCCT	0.413													33	32					0	0	0.005524	0	0
AFP	174	broad.mit.edu	37	4	74313315	74313315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:74313315C>T	uc003hgz.1	+	8	1027	c.980C>T	c.(979-981)TCT>TTT	p.S327F	AFP_uc003hha.1_Missense_Mutation_p.S327F|AFP_uc011cbg.1_Missense_Mutation_p.S101F	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	327	Albumin 2.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GAAGGTCTATCTCCAAATCTA	0.358									Alpha-Fetoprotein_Hereditary_Persistence_of				20	42					0	0	0.002299	0	0
AFM	173	broad.mit.edu	37	4	74354393	74354393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:74354393G>A	uc003hhb.2	+	7	791	c.760G>A	c.(760-762)GAG>AAG	p.E254K		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	254	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGAATTTAAGGAGCTTATTTC	0.363													25	48					0	0	0.004656	0	0
RASSF6	166824	broad.mit.edu	37	4	74477518	74477518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:74477518C>T	uc003hhd.1	-	2	214	c.91G>A	c.(91-93)GAA>AAA	p.E31K	RASSF6_uc003hhc.1_5'UTR|RASSF6_uc010iik.1_5'UTR|RASSF6_uc010iil.1_Intron	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	31					apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			GTCATCTTTTCCTCCTTTTTG	0.333													29	63					0	0	0.002836	0	0
THAP6	152815	broad.mit.edu	37	4	76442115	76442115	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:76442115G>C	uc003him.2	+	3	311	c.214G>C	c.(214-216)GAC>CAC	p.D72H	RCHY1_uc003hij.2_5'Flank|RCHY1_uc003hik.2_5'Flank|RCHY1_uc003hil.2_5'Flank|RCHY1_uc010iip.2_5'Flank|RCHY1_uc010iiq.2_5'Flank|RCHY1_uc010iir.2_5'Flank|THAP6_uc010iis.1_Missense_Mutation_p.D31H|THAP6_uc003hin.2_Missense_Mutation_p.D72H|THAP6_uc011cbm.1_Missense_Mutation_p.D72H|THAP6_uc010iiu.1_RNA|THAP6_uc003hio.1_RNA|THAP6_uc010iiv.2_Missense_Mutation_p.D72H	NM_144721	NP_653322	Q8TBB0	THAP6_HUMAN	THAP domain containing 6	72	THAP-type.					microtubule cytoskeleton	DNA binding|metal ion binding				0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GACAGATTTTGACAGAAGTGC	0.388													3	58					0	0	0.004672	0	0
SCARB2	950	broad.mit.edu	37	4	77087448	77087448	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:77087448C>A	uc003hju.1	-	10	1533	c.1194G>T	c.(1192-1194)ACG>ACT	p.T398T	SCARB2_uc011cbu.1_Silent_p.T255T	NM_005506	NP_005497	Q14108	SCRB2_HUMAN	scavenger receptor class B, member 2	398	Lumenal (Potential).				cell adhesion|protein targeting to lysosome	integral to plasma membrane|lysosomal lumen|lysosomal membrane|membrane fraction	enzyme binding|receptor activity				0			Lung(101;0.196)			TAATGTCTCCCGTTTCACTAC	0.428													6	112					0.00198382	0.0034086	0.001984	1	0
CCDC158	339965	broad.mit.edu	37	4	77303806	77303806	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:77303806G>A	uc003hkb.3	-	7	1024	c.871C>T	c.(871-873)CGA>TGA	p.R291*	CCDC158_uc003hkd.2_Nonsense_Mutation_p.R291*	NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	291	Potential.									skin(3)|ovary(2)|pancreas(1)	6						GCTTGGCTTCGAGCACTGCTA	0.333													30	46					0	0	0.002836	0	0
CCDC158	339965	broad.mit.edu	37	4	77305775	77305775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:77305775G>A	uc003hkb.3	-	4	485	c.332C>T	c.(331-333)TCA>TTA	p.S111L	CCDC158_uc003hkd.2_Missense_Mutation_p.S111L	NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	111	Potential.									skin(3)|ovary(2)|pancreas(1)	6						ATCAATGACTGACTGCCTCAA	0.338													32	76					0	0	0.004289	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660022	77660022	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:77660022C>T	uc011cbx.1	+	5	1649	c.696C>T	c.(694-696)TAC>TAT	p.Y232Y	SHROOM3_uc011cbz.1_Silent_p.Y56Y|SHROOM3_uc003hkf.1_Silent_p.Y107Y|SHROOM3_uc003hkg.2_Silent_p.Y10Y	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	232					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GTGGGGCATACCCACCCTGTC	0.572													13	28					0	0	0.002450	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661937	77661937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:77661937G>A	uc011cbx.1	+	5	3564	c.2611G>A	c.(2611-2613)GCG>ACG	p.A871T	SHROOM3_uc011cbz.1_Missense_Mutation_p.A695T|SHROOM3_uc003hkf.1_Missense_Mutation_p.A746T|SHROOM3_uc003hkg.2_Missense_Mutation_p.A649T	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	871					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GAGCGGAGGAGCGTCGGACAG	0.672													12	15					0	0	0.000978	0	0
SHROOM3	57619	broad.mit.edu	37	4	77691792	77691792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:77691792G>A	uc011cbx.1	+	10	6316	c.5363G>A	c.(5362-5364)GGA>GAA	p.G1788E	SHROOM3_uc003hkg.2_Missense_Mutation_p.G1566E	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1788	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GAGCTCATTGGAAGTCTCACC	0.572													25	21					0	0	0.001512	0	0
FRAS1	80144	broad.mit.edu	37	4	79367949	79367949	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:79367949G>A	uc003hlb.2	+	43	6365	c.5925G>A	c.(5923-5925)GTG>GTA	p.V1975V		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1974	CSPG 8.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CGGGAGTGGTGATAAGCAATT	0.483													9	15					0	0	0.000673	0	0
NAA11	84779	broad.mit.edu	37	4	80246801	80246801	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:80246801C>T	uc003hlt.3	-	1	371	c.231G>A	c.(229-231)GTG>GTA	p.V77V		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	77	N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						GTGAACGCTTCACGGCCAGTG	0.572													32	58					0	0	0.002096	0	0
FGF5	2250	broad.mit.edu	37	4	81188066	81188066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:81188066G>A	uc003hmd.2	+	1	325	c.88G>A	c.(88-90)GGG>AGG	p.G30R	FGF5_uc003hme.2_Missense_Mutation_p.G30R	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	30					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						CGCCCCCAAAGGGCAACCCGG	0.622													17	14					0	0	0.000958	0	0
ENOPH1	58478	broad.mit.edu	37	4	83375878	83375878	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:83375878C>T	uc003hmv.2	+	4	650	c.393C>T	c.(391-393)TTC>TTT	p.F131F	ENOPH1_uc003hmw.2_Silent_p.F43F|ENOPH1_uc003hmx.2_5'UTR	NM_021204	NP_067027	Q9UHY7	ENOPH_HUMAN	enolase-phosphatase 1	131					L-methionine salvage from methylthioadenosine	cytoplasm|nucleus	2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity|2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity|acireductone synthase activity|magnesium ion binding|phosphoglycolate phosphatase activity				0						CCTCTAGGTTCTTTGCAGATG	0.453													39	53					0	0	0.002522	0	0
AGPAT9	84803	broad.mit.edu	37	4	84511401	84511401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:84511401C>T	uc003how.2	+	7	912	c.694C>T	c.(694-696)CCC>TCC	p.P232S	AGPAT9_uc003hox.2_Missense_Mutation_p.P232S|AGPAT9_uc003hoy.2_Missense_Mutation_p.P232S	NM_032717	NP_116106	Q53EU6	GPAT3_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 9	232	HXXXXD motif.				phospholipid biosynthetic process|regulation of TOR signaling cascade|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	glycerol-3-phosphate O-acyltransferase activity			skin(1)	1		Hepatocellular(203;0.114)				CCATACTTCCCCCATTGATGT	0.398													16	39					0	0	0.004990	0	0
NKX6-1	4825	broad.mit.edu	37	4	85419046	85419046	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:85419046C>T	uc003hpa.1	-	1	342	c.336G>A	c.(334-336)GGG>GGA	p.G112G		NM_006168	NP_006159	P78426	NKX61_HUMAN	NK6 transcription factor related, locus 1	112	Repressor domain (By similarity).				detection of glucose|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|type B pancreatic cell maturation	nucleus					0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.0013)		GCAGGGCGGCCCCCGAGGCCA	0.413													4	3					0	0	0.000248	0	0
WDFY3	23001	broad.mit.edu	37	4	85715819	85715819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:85715819G>A	uc003hpd.2	-	21	3748	c.3340C>T	c.(3340-3342)CCT>TCT	p.P1114S		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1114						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TTATTTGGAGGAGAACTAAAA	0.398													25	27					0	0	0.002780	0	0
WDFY3	23001	broad.mit.edu	37	4	85742315	85742315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:85742315G>A	uc003hpd.2	-	11	1921	c.1513C>T	c.(1513-1515)CTT>TTT	p.L505F	WDFY3_uc003hpf.2_Missense_Mutation_p.L505F	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	505						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		ACCTCCAAAAGGCCAACCTCC	0.368													27	39					0	0	0.001271	0	0
MAPK10	5602	broad.mit.edu	37	4	86985432	86985432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:86985432G>A	uc003hpq.2	-	10	1164	c.1097C>T	c.(1096-1098)GCC>GTC	p.A366V	MAPK10_uc010ikg.2_Missense_Mutation_p.A328V|MAPK10_uc003hpr.2_Missense_Mutation_p.A328V|MAPK10_uc003hps.2_Missense_Mutation_p.A366V|MAPK10_uc003hpt.2_Missense_Mutation_p.A366V|MAPK10_uc003hpu.2_Missense_Mutation_p.A366V|MAPK10_uc003hpv.2_Missense_Mutation_p.A221V|MAPK10_uc003hpn.2_Missense_Mutation_p.A114V|MAPK10_uc003hpo.2_Missense_Mutation_p.A221V|MAPK10_uc011ccw.1_Missense_Mutation_p.A252V|MAPK10_uc003hpp.2_Missense_Mutation_p.A221V	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	366					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		CTCCACTTCGGCTGGGTCATA	0.443													47	58					0	0	0.003610	0	0
SLC10A6	345274	broad.mit.edu	37	4	87749254	87749254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:87749254C>T	uc003hqd.2	-	4	801	c.653G>A	c.(652-654)GGA>GAA	p.G218E		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	218	Extracellular (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		ATTCCAAGATCCTTTCGCCAG	0.473													26	34					0	0	0.004656	0	0
IBSP	3381	broad.mit.edu	37	4	88727328	88727328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:88727328G>A	uc003hqx.3	+	5	336	c.238G>A	c.(238-240)GAA>AAA	p.E80K		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	80	Poly-Glu.|Asp/Glu-rich (acidic).				biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		AGAGGAGGAGGAAGAAGAGGT	0.368													11	21					0	0	0.001368	0	0
IBSP	3381	broad.mit.edu	37	4	88732595	88732595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:88732595G>A	uc003hqx.3	+	7	585	c.487G>A	c.(487-489)GAA>AAA	p.E163K		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	163	Asp/Glu-rich (acidic).				biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		aaatgaaaacgaagaaagcga	0.333													4	8					0	0	0.000248	0	0
Unknown	0	broad.mit.edu	37	4	88813262	88813262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:88813262G>A	uc010iko.1	+	1	268	c.268G>A	c.(268-270)GGC>AGC	p.G90S						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		GGTAGACACAGGCATTGGCAT	0.473													7	6					0	0	0.001984	0	0
GPRIN3	285513	broad.mit.edu	37	4	90169400	90169400	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:90169400T>C	uc003hsm.1	-	2	2381	c.1862A>G	c.(1861-1863)AAG>AGG	p.K621R		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	621										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		TGGGGTCTTCTTGCCAGAACC	0.572													39	65					0	0	0.002522	0	0
GRID2	2895	broad.mit.edu	37	4	94031935	94031935	+	Missense_Mutation	SNP	C	T	T	rs142718797	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:94031935C>T	uc011cdt.1	+	4	824	c.566C>T	c.(565-567)TCT>TTT	p.S189F	GRID2_uc010ikx.2_Missense_Mutation_p.S189F|GRID2_uc011cdu.1_Missense_Mutation_p.S94F|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	189	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GACAAAGTCTCTCAGCAGGGA	0.393													61	84					0	0	0.003610	0	0
GRID2	2895	broad.mit.edu	37	4	94137989	94137989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:94137989G>A	uc011cdt.1	+	6	1148	c.890G>A	c.(889-891)CGG>CAG	p.R297Q	GRID2_uc010ikx.2_Missense_Mutation_p.R297Q|GRID2_uc011cdu.1_Missense_Mutation_p.R202Q|GRID2_uc010ikz.1_5'UTR	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	297	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity	p.R297R(1)		ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	ATAAGTCAGCGGTGTTTCCGT	0.398													53	56					0	0	0.003610	0	0
GRID2	2895	broad.mit.edu	37	4	94693290	94693290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:94693290G>A	uc011cdt.1	+	16	2923	c.2665G>A	c.(2665-2667)GAC>AAC	p.D889N	GRID2_uc011cdu.1_Missense_Mutation_p.D794N	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	889	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CACAGATGACGACAGCCCCCA	0.443													34	61					0	0	0.004289	0	0
BMPR1B	658	broad.mit.edu	37	4	96070058	96070058	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:96070058G>A	uc003htm.3	+	11	1510	c.1236G>A	c.(1234-1236)AGG>AGA	p.R412R	BMPR1B_uc010ilb.2_Silent_p.R412R|BMPR1B_uc003htn.3_Silent_p.R412R	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	412	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		AGGTTGCTAGGAGATGTGTAT	0.403													30	53					0	0	0.003271	0	0
PDHA2	5161	broad.mit.edu	37	4	96761747	96761747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:96761747G>A	uc003htr.3	+	1	509	c.446G>A	c.(445-447)GGA>GAA	p.G149E		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	149					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	GGAAAAGGAGGATCGATGCAT	0.517													25	31					0	0	0.003954	0	0
ADH4	127	broad.mit.edu	37	4	100047751	100047751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:100047751C>T	uc003hun.2	-	8	1188	c.1112G>A	c.(1111-1113)GGA>GAA	p.G371E	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.G390E	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	371					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	GTACCTTTTTCCTTGGTTCAT	0.343													27	53					0	0	0.002096	0	0
ADH1C	126	broad.mit.edu	37	4	100260777	100260777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:100260777C>T	uc003huu.2	-	10	1145	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	354					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	TTTATTTTTTCAAAAGGTAAA	0.308									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				32	30					0	0	0.001512	0	0
ADH7	131	broad.mit.edu	37	4	100340194	100340194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:100340194C>T	uc003huv.1	-	7	1045	c.946G>A	c.(946-948)GAC>AAC	p.D316N		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	316					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	AACATCGGGTCATAGGTGAGC	0.517													16	24					0	0	0.000743	0	0
ADH7	131	broad.mit.edu	37	4	100348964	100348964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:100348964G>A	uc003huv.1	-	5	665	c.566C>T	c.(565-567)TCC>TTC	p.S189F		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	189					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	ATATCCAGTGGAAAACCCACA	0.408													28	23					0	0	0.001512	0	0
ADH7	131	broad.mit.edu	37	4	100349013	100349013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:100349013C>T	uc003huv.1	-	5	616	c.517G>A	c.(517-519)GAT>AAT	p.D173N		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	173					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	GCTGCATCATCAATCTTAGCA	0.458													26	66					0	0	0.001061	0	0
PPP3CA	5530	broad.mit.edu	37	4	102020813	102020813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:102020813G>A	uc011cen.1	-	4	1126	c.451C>T	c.(451-453)CAT>TAT	p.H151Y	PPP3CA_uc003hvu.2_Missense_Mutation_p.H151Y|PPP3CA_uc010ilj.2_Missense_Mutation_p.H151Y|PPP3CA_uc003hvt.2_Missense_Mutation_p.H138Y|PPP3CA_uc003hvs.2_Missense_Mutation_p.H84Y|PPP3CA_uc010ilk.2_Intron	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	protein phosphatase 3, catalytic subunit, alpha	151	Catalytic.	Proton donor (By similarity).			protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		CTACATTCATGATTTCCACGA	0.289													21	41					0	0	0.004656	0	0
BANK1	55024	broad.mit.edu	37	4	102951356	102951356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:102951356C>T	uc003hvy.3	+	10	2108	c.1834C>T	c.(1834-1836)CCT>TCT	p.P612S	BANK1_uc003hvx.3_Missense_Mutation_p.P597S|BANK1_uc010ill.2_Missense_Mutation_p.P479S|BANK1_uc003hvz.3_Missense_Mutation_p.P582S	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	612					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		AAATAGACCTCCTGCCCCCAC	0.378													42	38					0	0	0.002852	0	0
BANK1	55024	broad.mit.edu	37	4	102993522	102993522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:102993522G>A	uc003hvy.3	+	15	2537	c.2263G>A	c.(2263-2265)GAA>AAA	p.E755K	BANK1_uc003hvx.3_Missense_Mutation_p.E740K|BANK1_uc010ill.2_Missense_Mutation_p.E622K|BANK1_uc003hvz.3_Missense_Mutation_p.E725K	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	755					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		TGCCCACAATGAAAATAAGTT	0.259													63	90					0	0	0.003610	0	0
TACR3	6870	broad.mit.edu	37	4	104579461	104579461	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:104579461G>A	uc003hxe.1	-	2	791	c.648C>T	c.(646-648)TTC>TTT	p.F216F		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	216	Helical; Name=4; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		GACACTGAGGGAAGGCAAGTA	0.423													27	34					0	0	0.001512	0	0
TACR3	6870	broad.mit.edu	37	4	104640509	104640509	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:104640509C>T	uc003hxe.1	-	1	467	c.324G>A	c.(322-324)TGG>TGA	p.W108*		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	108	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		CCAGGATGATCCAGATGACGA	0.582													20	28					0	0	0.000958	0	0
TACR3	6870	broad.mit.edu	37	4	104640704	104640704	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:104640704T>C	uc003hxe.1	-	1	272	c.129A>G	c.(127-129)CAA>CAG	p.Q43Q		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	43	Extracellular (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		GGTCCAGCAGTTGCAGCCACC	0.701													21	17					0	0	0.003954	0	0
DKK2	27123	broad.mit.edu	37	4	107847025	107847025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:107847025C>T	uc003hyi.2	-	2	1009	c.304G>A	c.(304-306)GTG>ATG	p.V102M	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Missense_Mutation_p.V102M	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	102	DKK-type Cys-1.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		CTCCGACACACCATGCAGGCC	0.512													32	50					0	0	0.002445	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109672152	109672152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:109672152G>A	uc003hzc.2	-	7	822	c.641C>T	c.(640-642)TCC>TTC	p.S214F	AGXT2L1_uc010imc.2_Missense_Mutation_p.S208F|AGXT2L1_uc011cfm.1_Missense_Mutation_p.S174F|AGXT2L1_uc011cfn.1_Missense_Mutation_p.S141F|AGXT2L1_uc011cfo.1_Missense_Mutation_p.S156F	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	214					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		ACTCTGCATGGATTCAGCAAT	0.458													60	78					0	0	0.003610	0	0
COL25A1	84570	broad.mit.edu	37	4	109782121	109782121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:109782121G>A	uc003hze.1	-	22	1735	c.1204C>T	c.(1204-1206)CGT>TGT	p.R402C	COL25A1_uc003hzg.2_Missense_Mutation_p.R402C|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.R168C	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	402	Extracellular (Potential).|Collagen-like 5.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		TTTTCTCCACGATCCCCCTTT	0.438													23	26					0	0	0.001061	0	0
EGF	1950	broad.mit.edu	37	4	110866251	110866251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:110866251C>T	uc003hzy.3	+	5	1212	c.760C>T	c.(760-762)CTT>TTT	p.L254F	EGF_uc011cfu.1_Missense_Mutation_p.L254F|EGF_uc011cfv.1_Missense_Mutation_p.L254F	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	254	LDL-receptor class B 4.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	TGCAATGTCCCTTTTTGGTGA	0.338													9	23					0	0	0.000978	0	0
ENPEP	2028	broad.mit.edu	37	4	111397853	111397853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:111397853G>A	uc003iab.3	+	1	625	c.283G>A	c.(283-285)GAC>AAC	p.D95N		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	95	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TCGACTGCCGGACTTCGTCAA	0.612													15	37					0	0	0.004990	0	0
ENPEP	2028	broad.mit.edu	37	4	111470887	111470887	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:111470887C>T	uc003iab.3	+	17	2688	c.2346C>T	c.(2344-2346)CTC>CTT	p.L782L		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	782	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CCGTAAATCTCAGGCTTCTGG	0.393													35	38					0	0	0.005524	0	0
ENPEP	2028	broad.mit.edu	37	4	111470937	111470937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:111470937C>T	uc003iab.3	+	17	2738	c.2396C>T	c.(2395-2397)TCA>TTA	p.S799L		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	799	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AATGAGATTTCATGGAACTAC	0.398													31	42					0	0	0.003271	0	0
ANK2	287	broad.mit.edu	37	4	114208808	114208808	+	Silent	SNP	T	C	C	rs113454484	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:114208808T>C	uc003ibe.3	+	19	2227	c.2127T>C	c.(2125-2127)AAT>AAC	p.N709N	ANK2_uc003ibd.3_Silent_p.N688N|ANK2_uc003ibf.3_Silent_p.N709N|ANK2_uc003ibc.2_Silent_p.N685N|ANK2_uc011cgb.1_Silent_p.N724N	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	709	ANK 21.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ATAAAGTGAATGTTGCTGATA	0.423													12	18					0	0	0.003163	0	0
NDST4	64579	broad.mit.edu	37	4	115749015	115749015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:115749015G>A	uc003ibu.2	-	14	3255	c.2576C>T	c.(2575-2577)CCT>CTT	p.P859L	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	859	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CGATGGCAGAGGCTGTCCCAG	0.398													17	33					0	0	0.004990	0	0
NDST3	9348	broad.mit.edu	37	4	118975303	118975303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:118975303G>A	uc003ibx.2	+	2	641	c.238G>A	c.(238-240)GTC>ATC	p.V80I	NDST3_uc011cgf.1_Missense_Mutation_p.V80I|NDST3_uc003ibw.2_Missense_Mutation_p.V80I	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	80	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						AGACCCCACAGTCCTAGTATT	0.433													27	51					0	0	0.001786	0	0
PRSS12	8492	broad.mit.edu	37	4	119216939	119216939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:119216939G>A	uc003ica.1	-	10	1957	c.1910C>T	c.(1909-1911)TCT>TTT	p.S637F		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	637	Peptidase S1.					membrane	scavenger receptor activity			skin(1)	1						TTACCTTAAAGAATTTTTCCC	0.358													33	45					0	0	0.001485	0	0
Unknown	0	broad.mit.edu	37	4	119434937	119434937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:119434937C>T	uc010imy.1	+	2	292	c.223C>T	c.(223-225)CCC>TCC	p.P75S	CEP170L_uc003icb.2_5'Flank					Homo sapiens cDNA, FLJ98257.																		TGCTGACAGACCCTTGAGTAA	0.423													30	42					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	4	119435187	119435187	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:119435187T>A	uc010imy.1	+	2	542	c.473T>A	c.(472-474)TTT>TAT	p.F158Y	CEP170L_uc003icb.2_5'Flank					Homo sapiens cDNA, FLJ98257.																		GAGGAAACTTTTAAACAAGAA	0.393													24	38					0	0	0.005443	0	0
SEC24D	9871	broad.mit.edu	37	4	119665201	119665201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:119665201G>A	uc003ici.3	-	15	2209	c.1937C>T	c.(1936-1938)TCG>TTG	p.S646L	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Missense_Mutation_p.S647L|SEC24D_uc003icl.2_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	646					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						CAGCCCCAGCGAGGCCACGTC	0.502													17	21					0	0	0.001216	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951918	119951918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:119951918C>T	uc003icm.3	+	4	2184	c.1988C>T	c.(1987-1989)TCG>TTG	p.S663L	SYNPO2_uc010ina.2_Missense_Mutation_p.S663L|SYNPO2_uc010inb.2_Missense_Mutation_p.S663L|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.S591L	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	663						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TTTTACGATTCGTCTGAGCGA	0.567													17	28					0	0	0.000743	0	0
MYOZ2	51778	broad.mit.edu	37	4	120107163	120107163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:120107163G>A	uc003icp.3	+	6	816	c.603G>A	c.(601-603)ATG>ATA	p.M201I		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	201							protein phosphatase 2B binding				0						CATCAAGAATGGTTAAATTTA	0.348													19	38					0	0	0.002299	0	0
TNIP3	79931	broad.mit.edu	37	4	122059826	122059826	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:122059826C>A	uc010ing.2	-	10	1095	c.899G>T	c.(898-900)TGG>TTG	p.W300L	TNIP3_uc010inh.2_Missense_Mutation_p.W300L|TNIP3_uc011cgj.1_Intron	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	300										ovary(1)	1						AAGAGCATACCACTGATAGTC	0.393													36	46					3.33635e-10	5.77208e-10	0.002852	1	0
TRPC3	7222	broad.mit.edu	37	4	122853464	122853464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:122853464C>T	uc003ieg.2	-	2	1023	c.949G>A	c.(949-951)GAG>AAG	p.E317K	TRPC3_uc010inr.2_Missense_Mutation_p.E244K|TRPC3_uc003ief.2_Missense_Mutation_p.E244K|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	232	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TTGGCCAGCTCGTTGCTGAGC	0.607													12	9					0	0	0.002450	0	0
ADAD1	132612	broad.mit.edu	37	4	123301332	123301332	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:123301332C>T	uc003ieo.2	+	3	340	c.108C>T	c.(106-108)CCC>CCT	p.P36P	ADAD1_uc003iep.2_Silent_p.P36P|ADAD1_uc003ieq.2_Silent_p.P18P	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	36					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TAACTACACCCACAGGATGGT	0.473													22	36					0	0	0.003954	0	0
ADAD1	132612	broad.mit.edu	37	4	123302155	123302155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:123302155C>T	uc003ieo.2	+	4	413	c.181C>T	c.(181-183)CCA>TCA	p.P61S	ADAD1_uc003iep.2_Missense_Mutation_p.P61S|ADAD1_uc003ieq.2_Missense_Mutation_p.P43S	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	61					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						AGGTAATTTTCCAGAGCCGTT	0.323													21	23					0	0	0.001216	0	0
IL21	59067	broad.mit.edu	37	4	123534024	123534024	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:123534024G>A	uc003ies.2	-	4	465	c.420C>T	c.(418-420)TTC>TTT	p.F140F	IL21_uc010int.2_Silent_p.F133F	NM_021803	NP_068575	Q9HBE4	IL21_HUMAN	interleukin 21	133					cell maturation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-17 production|positive regulation of T cell proliferation|signal transduction	extracellular space	cytokine activity|interleukin-2 receptor binding				0						GAAGTGATTTGAATCTTTCTA	0.313													17	37					0	0	0.001216	0	0
FAT4	79633	broad.mit.edu	37	4	126337621	126337621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:126337621G>A	uc003ifj.3	+	6	6862	c.6862G>A	c.(6862-6864)GAT>AAT	p.D2288N	FAT4_uc011cgp.1_Missense_Mutation_p.D586N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2288	Extracellular (Potential).|Cadherin 22.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAGAGATGATGATCGAGGATC	0.383													76	85					0	0	0.003610	0	0
FAT4	79633	broad.mit.edu	37	4	126370701	126370701	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:126370701C>T	uc003ifj.3	+	9	8530	c.8530C>T	c.(8530-8532)CGA>TGA	p.R2844*	FAT4_uc011cgp.1_Nonsense_Mutation_p.R1142*|FAT4_uc003ifi.1_Nonsense_Mutation_p.R322*	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2844	Cadherin 27.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTACAGAATTCGAGTTTCCGC	0.393													28	29					0	0	0.001061	0	0
FAT4	79633	broad.mit.edu	37	4	126372579	126372579	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:126372579C>T	uc003ifj.3	+	9	10408	c.10408C>T	c.(10408-10410)CGA>TGA	p.R3470*	FAT4_uc011cgp.1_Nonsense_Mutation_p.R1768*|FAT4_uc003ifi.1_Nonsense_Mutation_p.R948*	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3470	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGAATTAGATCGAGAAACCCT	0.448													30	47					0	0	0.001271	0	0
FAT4	79633	broad.mit.edu	37	4	126372845	126372845	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:126372845C>T	uc003ifj.3	+	9	10674	c.10674C>T	c.(10672-10674)TTC>TTT	p.F3558F	FAT4_uc011cgp.1_Silent_p.F1856F|FAT4_uc003ifi.1_Silent_p.F1036F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3558	Cadherin 34.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCAGTTATTTCAGTCTGAGCA	0.483													33	74					0	0	0.002445	0	0
FAT4	79633	broad.mit.edu	37	4	126373646	126373646	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:126373646C>T	uc003ifj.3	+	9	11475	c.11475C>T	c.(11473-11475)TCC>TCT	p.S3825S	FAT4_uc011cgp.1_Silent_p.S2123S|FAT4_uc003ifi.1_Silent_p.S1303S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3825	Extracellular (Potential).|EGF-like 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTGTGAGCTCCGTATTAAAAA	0.507													23	27					0	0	0.002299	0	0
FAT4	79633	broad.mit.edu	37	4	126401004	126401004	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:126401004G>A	uc003ifj.3	+	14	12582	c.12582G>A	c.(12580-12582)GGG>GGA	p.G4194G	FAT4_uc011cgp.1_Intron|FAT4_uc003ifi.1_Silent_p.G1672G	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4194	EGF-like 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GACTCACTGGGAAATACTGTG	0.423													11	25					0	0	0.000978	0	0
FAT4	79633	broad.mit.edu	37	4	126411418	126411418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:126411418G>A	uc003ifj.3	+	17	13441	c.13441G>A	c.(13441-13443)GCT>ACT	p.A4481T	FAT4_uc011cgp.1_Missense_Mutation_p.A2722T|FAT4_uc003ifi.1_Missense_Mutation_p.A1958T	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4481	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGTGTGCAAAGCTGGAAGTCC	0.612													23	33					0	0	0.004656	0	0
HSPA4L	22824	broad.mit.edu	37	4	128716986	128716986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:128716986G>A	uc003ifm.2	+	3	482	c.229G>A	c.(229-231)GAT>AAT	p.D77N	HSPA4L_uc010iny.1_Missense_Mutation_p.D77N|HSPA4L_uc011cgr.1_Missense_Mutation_p.D44N	NM_014278	NP_055093	O95757	HS74L_HUMAN	heat shock 70kDa protein 4-like	77					protein folding|response to unfolded protein	cytoplasm|nucleus	ATP binding|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						ATCATTTGATGATCCCATTGT	0.398													26	35					0	0	0.003330	0	0
PHF17	79960	broad.mit.edu	37	4	129792669	129792669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:129792669C>T	uc003igk.2	+	11	2061	c.1781C>T	c.(1780-1782)CCC>CTC	p.P594L	PHF17_uc003igl.2_Missense_Mutation_p.P582L|PHF17_uc011cgy.1_Missense_Mutation_p.P594L	NM_199320	NP_955352	Q6IE81	JADE1_HUMAN	PHD finger protein 17 long isoform	594					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding				0						CTGAAAAAGCCCCATAAGCGA	0.502													13	35					0	0	0.001368	0	0
SCLT1	132320	broad.mit.edu	37	4	129864297	129864297	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:129864297G>A	uc003igp.2	-	17	1992	c.1486C>T	c.(1486-1488)CAA>TAA	p.Q496*	SCLT1_uc003ign.2_Nonsense_Mutation_p.Q160*|SCLT1_uc003igo.2_Nonsense_Mutation_p.Q106*|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	496	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						AATACATTTTGAAGTTTCTGA	0.348													20	29					0	0	0.001882	0	0
PCDH10	57575	broad.mit.edu	37	4	134084147	134084147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:134084147C>T	uc003iha.2	+	4	3639	c.2813C>T	c.(2812-2814)TCC>TTC	p.S938F		NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	938	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GATCTCTTCTCCAATTGCACT	0.463													24	39					0	0	0.001061	0	0
PCDH18	54510	broad.mit.edu	37	4	138451044	138451044	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:138451044G>A	uc003ihe.3	-	1	2586	c.2199C>T	c.(2197-2199)TCC>TCT	p.S733S	PCDH18_uc003ihf.3_Silent_p.S726S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.S513S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	733	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGCAGTTATAGGATCTAGTGT	0.443													18	36					0	0	0.001216	0	0
PCDH18	54510	broad.mit.edu	37	4	138451725	138451725	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:138451725C>T	uc003ihe.3	-	1	1905	c.1518G>A	c.(1516-1518)GAG>GAA	p.E506E	PCDH18_uc003ihf.3_Silent_p.E499E|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.E286E|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	506	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GAATAAAACTCTCCAAGATGG	0.403													48	75					0	0	0.003610	0	0
PCDH18	54510	broad.mit.edu	37	4	138451923	138451923	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:138451923C>T	uc003ihe.3	-	1	1707	c.1320G>A	c.(1318-1320)AGG>AGA	p.R440R	PCDH18_uc003ihf.3_Silent_p.R433R|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.R220R|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	440	Cadherin 4.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGGGTGTCCCCCTGTCCTCAG	0.373													40	55					0	0	0.001287	0	0
PCDH18	54510	broad.mit.edu	37	4	138452418	138452418	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:138452418C>T	uc003ihe.3	-	1	1212	c.825G>A	c.(823-825)GAG>GAA	p.E275E	PCDH18_uc003ihf.3_Silent_p.E268E|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.E55E|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	275	Cadherin 3.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CATTAGCGCCCTCATCTGGAT	0.403													36	28					0	0	0.003755	0	0
ELF2	1998	broad.mit.edu	37	4	139983201	139983201	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:139983201G>A	uc003ihp.1	-	7	794	c.588C>T	c.(586-588)ACC>ACT	p.T196T	ELF2_uc003ihm.1_Silent_p.T148T|ELF2_uc003ihn.1_Silent_p.T136T|ELF2_uc003iho.1_Silent_p.T119T|ELF2_uc011chc.1_Silent_p.T11T	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	208	ETS.				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					CCCACAAATAGGTTGTGTTTC	0.294													16	33					0	0	0.004007	0	0
CLGN	1047	broad.mit.edu	37	4	141317334	141317334	+	Missense_Mutation	SNP	C	T	T	rs151290768		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:141317334C>T	uc011chi.1	-	10	1128	c.910G>A	c.(910-912)GAA>AAA	p.E304K	CLGN_uc003iii.2_Missense_Mutation_p.E304K	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	304	1-3.|Lumenal (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					CTTGAATCTTCTATTTGGGCA	0.358													55	85					0	0	0.003610	0	0
TBC1D9	23158	broad.mit.edu	37	4	141543662	141543662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:141543662G>A	uc010ioj.2	-	21	3760	c.3488C>T	c.(3487-3489)TCC>TTC	p.S1163F		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1163						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CGAGTATGAGGACATGGAGCT	0.642													22	37					0	0	0.002299	0	0
TBC1D9	23158	broad.mit.edu	37	4	141543919	141543919	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:141543919C>T	uc010ioj.2	-	21	3503	c.3231G>A	c.(3229-3231)GAG>GAA	p.E1077E		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1077						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CGCTCCCGCCCTCCTTTGCAG	0.652													10	14					0	0	0.000673	0	0
SMARCA5	8467	broad.mit.edu	37	4	144459978	144459978	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:144459978T>A	uc003ijg.2	+	13	2119	c.1657T>A	c.(1657-1659)TTT>ATT	p.F553I		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	553	Helicase C-terminal.				CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					CAGCACAAAGTTTGTTTTCAT	0.383													43	55					0	0	0.003610	0	0
GYPA	2993	broad.mit.edu	37	4	145038046	145038046	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:145038046C>T	uc003ijo.3	-	5	434	c.318G>A	c.(316-318)ACG>ACA	p.T106T	GYPA_uc003ijn.2_Intron|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Silent_p.T73T|GYPA_uc003ijp.3_Silent_p.T74T|GYPA_uc010ioq.2_Silent_p.T93T|GYPA_uc010ior.2_Silent_p.T41T|GYPA_uc010ios.1_RNA	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	106	Helical.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					TTAAGAGGATCGTTCCAATAA	0.358													60	106					0	0	0.003610	0	0
HHIP	64399	broad.mit.edu	37	4	145573889	145573889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:145573889C>T	uc003ijs.1	+	2	1067	c.412C>T	c.(412-414)CCT>TCT	p.P138S	HHIP_uc003ijr.1_Missense_Mutation_p.P138S	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	138						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		CCTAGTACTTCCTCTGCTCTG	0.408													50	72					0	0	0.003610	0	0
HHIP	64399	broad.mit.edu	37	4	145627723	145627723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:145627723C>T	uc003ijs.1	+	5	1527	c.872C>T	c.(871-873)CCC>CTC	p.P291L		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	291						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		GCATTCCATCCCAATTACAAG	0.408													8	11					0	0	0.003080	0	0
HHIP	64399	broad.mit.edu	37	4	145633170	145633170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:145633170G>A	uc003ijs.1	+	8	2025	c.1370G>A	c.(1369-1371)GGA>GAA	p.G457E		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	457						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		GACTCCAATGGAAAAAACAGA	0.358													42	67					0	0	0.002522	0	0
ABCE1	6059	broad.mit.edu	37	4	146044633	146044633	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:146044633C>T	uc003ijx.2	+	16	1961	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F	ABCE1_uc003ijy.2_Silent_p.F507F|ABCE1_uc010iot.2_RNA	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1	507	ABC transporter 2.				interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					GTTTTAGTTTCATACTCCATG	0.353													26	36					0	0	0.001061	0	0
POU4F2	5458	broad.mit.edu	37	4	147561703	147561703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:147561703G>A	uc003ikv.2	+	2	1221	c.973G>A	c.(973-975)GAG>AAG	p.E325K		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	325	POU-specific.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					ATGGCTCGAGGAGGCCGAGAA	0.597													19	35					0	0	0.001882	0	0
EDNRA	1909	broad.mit.edu	37	4	148406837	148406837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:148406837G>A	uc003iky.2	+	2	696	c.4G>A	c.(4-6)GAA>AAA	p.E2K	EDNRA_uc011cid.1_Intron|EDNRA_uc010ipe.1_Missense_Mutation_p.E2K|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Missense_Mutation_p.E2K	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	2					activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	CCTCAAGATGGAAACCCTTTG	0.388													22	39					0	0	0.003330	0	0
EDNRA	1909	broad.mit.edu	37	4	148406860	148406860	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:148406860C>T	uc003iky.2	+	2	719	c.27C>T	c.(25-27)TCC>TCT	p.S9S	EDNRA_uc011cid.1_Intron|EDNRA_uc010ipe.1_Silent_p.S9S|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Silent_p.S9S	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	9					activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	TCAGGGCATCCTTTTGGCTGG	0.418													36	27					0	0	0.002852	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148743890	148743890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:148743890C>T	uc003ilf.2	+	2	167	c.167C>T	c.(166-168)GCC>GTC	p.A56V	ARHGAP10_uc003ile.1_Missense_Mutation_p.A56V	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	56	BAR.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		CTGTCAGTGGCCCAGCGGAAG	0.358													20	36					0	0	0.002780	0	0
PET112L	5188	broad.mit.edu	37	4	152679989	152679989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:152679989G>A	uc003iml.2	-	2	274	c.262C>T	c.(262-264)CGC>TGC	p.R88C	PET112L_uc003imm.3_Missense_Mutation_p.R88C	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	88						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCTGAAAAGCGAACTTGAGAT	0.383													59	79					0	0	0.003610	0	0
FBXW7	55294	broad.mit.edu	37	4	153253840	153253840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:153253840G>A	uc003ims.2	-	6	1042	c.893C>T	c.(892-894)CCC>CTC	p.P298L	FBXW7_uc011cii.1_Missense_Mutation_p.P298L|FBXW7_uc003imt.2_Missense_Mutation_p.P298L|FBXW7_uc011cih.1_Missense_Mutation_p.P122L|FBXW7_uc003imq.2_Missense_Mutation_p.P218L|FBXW7_uc003imr.2_Missense_Mutation_p.P180L	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	298	F-box.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.P298S(2)|p.P298R(1)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				CAGGTCTTTGGGTTCCAGGAA	0.343			Mis|N|D|F		colorectal|endometrial|T-ALL								17	31					0	0	0.001216	0	0
FHDC1	85462	broad.mit.edu	37	4	153897156	153897156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:153897156G>A	uc003inf.2	+	11	2788	c.2713G>A	c.(2713-2715)GTC>ATC	p.V905I		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	905					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					CATGCGCAAGGTCATGCCCAT	0.687													15	18					0	0	0.003163	0	0
TRIM2	23321	broad.mit.edu	37	4	154216662	154216662	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:154216662C>T	uc003ing.2	+	6	1104	c.903C>T	c.(901-903)TTC>TTT	p.F301F	TRIM2_uc003inh.2_Silent_p.F328F	NM_001130067	NP_001123539	Q9C040	TRIM2_HUMAN	tripartite motif-containing 2 isoform 2	301						cytoplasm	zinc ion binding			central_nervous_system(1)	1	all_hematologic(180;0.093)	Medulloblastoma(177;0.00225)		GBM - Glioblastoma multiforme(119;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0703)		AGCTGGATTTCATCGTGGAAA	0.607													11	20					0	0	0.001855	0	0
TLR2	7097	broad.mit.edu	37	4	154626225	154626225	+	Silent	SNP	C	T	T	rs150753690		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:154626225C>T	uc003inq.2	+	3	2385	c.2166C>T	c.(2164-2166)TTC>TTT	p.F722F	TLR2_uc003inr.2_Silent_p.F722F|TLR2_uc003ins.2_Silent_p.F722F	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	722	TIR.|Cytoplasmic (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				TCTCCCATTTCCGTCTTTTTG	0.433													43	76					0	0	0.002222	0	0
RNF175	285533	broad.mit.edu	37	4	154649372	154649372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:154649372C>T	uc003int.2	-	4	761	c.388G>A	c.(388-390)GGA>AGA	p.G130R	RNF175_uc003inu.1_Intron	NM_173662	NP_775933	Q8N4F7	RN175_HUMAN	ring finger protein 175	130						integral to membrane	zinc ion binding			ovary(1)|pancreas(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				GGTGTCCTTCCTGAGAGGGGT	0.438													18	28					0	0	0.000958	0	0
RNF175	285533	broad.mit.edu	37	4	154649452	154649452	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:154649452C>T	uc003int.2	-	4	681	c.308G>A	c.(307-309)TGG>TAG	p.W103*	RNF175_uc003inu.1_Intron	NM_173662	NP_775933	Q8N4F7	RN175_HUMAN	ring finger protein 175	103	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(1)|pancreas(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				CAGAAACCGCCACCAGTATAA	0.453													18	49					0	0	0.000958	0	0
DCHS2	54798	broad.mit.edu	37	4	155157596	155157596	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:155157596G>A	uc003inw.2	-	25	6843	c.6843C>T	c.(6841-6843)TTC>TTT	p.F2281F		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2281	Cadherin 20.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CAGTTAAGGTGAATTTTGTCA	0.353													21	35					0	0	0.001523	0	0
DCHS2	54798	broad.mit.edu	37	4	155163905	155163905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:155163905C>T	uc003inw.2	-	22	5596	c.5596G>A	c.(5596-5598)GAT>AAT	p.D1866N		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1866	Cadherin 16.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ATCCCTTTATCTGTGGCTTGG	0.388													14	35					0	0	0.003163	0	0
DCHS2	54798	broad.mit.edu	37	4	155243506	155243506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:155243506C>T	uc003inw.2	-	13	2788	c.2788G>A	c.(2788-2790)GGA>AGA	p.G930R		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	930	Cadherin 7.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ACTGCCTGTCCTTGAAGAGGA	0.373													27	30					0	0	0.001512	0	0
MAP9	79884	broad.mit.edu	37	4	156294331	156294331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:156294331C>T	uc003ios.2	-	4	702	c.438G>A	c.(436-438)ATG>ATA	p.M146I	MAP9_uc011cin.1_Missense_Mutation_p.M146I|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.M146I|MAP9_uc010iqb.1_Missense_Mutation_p.M74I	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	146					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		GTTTAGGTTTCATTTTTATTT	0.303													21	32					0	0	0.001882	0	0
PDGFC	56034	broad.mit.edu	37	4	157689052	157689052	+	Missense_Mutation	SNP	C	T	T	rs138079287		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:157689052C>T	uc003iph.1	-	5	1285	c.794G>A	c.(793-795)AGA>AAA	p.R265K	PDGFC_uc003ipi.1_Missense_Mutation_p.R102K|PDGFC_uc011cis.1_Missense_Mutation_p.R102K|PDGFC_uc011cir.1_Missense_Mutation_p.R109K	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	265					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		GGTATCGGTTCTCTTTAGTTC	0.453													41	65					0	0	0.002222	0	0
GLRB	2743	broad.mit.edu	37	4	158057739	158057739	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:158057739G>A	uc003ipj.2	+	5	618	c.416G>A	c.(415-417)TGG>TAG	p.W139*		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	139	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	AAGTGTTTATGGAAACCTGAT	0.403													31	55					0	0	0.001786	0	0
GRIA2	2891	broad.mit.edu	37	4	158262426	158262426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:158262426G>A	uc003ipm.3	+	12	2314	c.1855G>A	c.(1855-1857)GGG>AGG	p.G619R	GRIA2_uc011cit.1_Missense_Mutation_p.G572R|GRIA2_uc003ipl.3_Missense_Mutation_p.G619R|GRIA2_uc003ipk.3_Missense_Mutation_p.G572R|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	619	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	ATCCCTCTCTGGGCGCATTGT	0.393													38	69					0	0	0.003214	0	0
TMEM144	55314	broad.mit.edu	37	4	159165493	159165493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:159165493G>A	uc003ipx.2	+	12	1466	c.946G>A	c.(946-948)GAA>AAA	p.E316K	TMEM144_uc010iqi.2_RNA	NM_018342	NP_060812	Q7Z5S9	TM144_HUMAN	transmembrane protein 144	316						integral to membrane					0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0539)		CATGTTTAAGGAAATAAAGGT	0.239													21	29					0	0	0.001786	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160253700	160253700	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:160253700C>T	uc003iqg.3	+	11	1813	c.1503C>T	c.(1501-1503)TCC>TCT	p.S501S		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	501					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		GTCGCTACTCCATTCCAGATC	0.393													21	22					0	0	0.001523	0	0
FSTL5	56884	broad.mit.edu	37	4	162697192	162697192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:162697192C>T	uc003iqh.2	-	5	880	c.444G>A	c.(442-444)ATG>ATA	p.M148I	FSTL5_uc003iqi.2_Missense_Mutation_p.M147I|FSTL5_uc010iqv.2_Missense_Mutation_p.M147I	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	148						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		GCATATTTTTCATCTTGCTGT	0.289													9	15					0	0	0.000673	0	0
TKTL2	84076	broad.mit.edu	37	4	164394716	164394716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:164394716C>T	uc003iqp.3	-	1	332	c.171G>A	c.(169-171)ATG>ATA	p.M57I		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	57						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GTTTATACTTCATCGTGTGGA	0.577													7	16					0	0	0.001984	0	0
MARCH1	55016	broad.mit.edu	37	4	164466772	164466772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:164466772C>T	uc003iqs.1	-	7	1524	c.547G>A	c.(547-549)GAA>AAA	p.E183K	MARCH1_uc003iqr.1_Missense_Mutation_p.E166K	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	183					antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGCTTGATTTCCTCCGCTGTC	0.433													25	28					0	0	0.003954	0	0
ANP32C	23520	broad.mit.edu	37	4	165118166	165118166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:165118166C>T	uc011cjk.1	-	1	698	c.698G>A	c.(697-699)CGA>CAA	p.R233Q	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	233											0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		ttctcattttcgcttctgacc	0.085													8	20					0	0	0.000673	0	0
TRIM60	166655	broad.mit.edu	37	4	165961311	165961311	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:165961311C>T	uc003iqy.1	+	3	257	c.87C>T	c.(85-87)ATC>ATT	p.I29I	TRIM60_uc010iqx.1_Silent_p.I29I	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	29	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		CAGTGACCATCAACTGTGGGC	0.507													24	29					0	0	0.003954	0	0
TRIM60	166655	broad.mit.edu	37	4	165962177	165962177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:165962177G>A	uc003iqy.1	+	3	1123	c.953G>A	c.(952-954)CGA>CAA	p.R318Q	TRIM60_uc010iqx.1_Missense_Mutation_p.R318Q	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	318	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		AAAGCTGTGCGATATGAAAGA	0.413													48	60					0	0	0.003214	0	0
SC4MOL	6307	broad.mit.edu	37	4	166261499	166261499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:166261499C>T	uc003ire.2	+	5	788	c.658C>T	c.(658-660)CGT>TGT	p.R220C	SC4MOL_uc010irb.2_Missense_Mutation_p.R220C|SC4MOL_uc003irf.2_Missense_Mutation_p.R89C	NM_006745	NP_006736	Q15800	ERG25_HUMAN	sterol-C4-methyl oxidase-like isoform 1	220					cholesterol biosynthetic process|fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	C-4 methylsterol oxidase activity|iron ion binding				0	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0875)	NADH(DB00157)	GGTGACCATTCGTTTATTAGA	0.333													34	48					0	0	0.004878	0	0
CPE	1363	broad.mit.edu	37	4	166385634	166385634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:166385634G>A	uc003irg.3	+	2	677	c.400G>A	c.(400-402)GAA>AAA	p.E134K		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	134					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTATGCAACGAATACCAGAA	0.473											OREG0016390	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	16					0	0	0.002450	0	0
TLL1	7092	broad.mit.edu	37	4	166964467	166964467	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:166964467C>T	uc003irh.1	+	12	2067	c.1420C>T	c.(1420-1422)CAG>TAG	p.Q474*	TLL1_uc011cjn.1_Nonsense_Mutation_p.Q474*|TLL1_uc011cjo.1_Nonsense_Mutation_p.Q298*	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	474	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AGGACAGATTCAGTCTCCCAA	0.413													48	68					0	0	0.003610	0	0
SPOCK3	50859	broad.mit.edu	37	4	167810341	167810341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:167810341C>T	uc003iri.1	-	7	679	c.538G>A	c.(538-540)GAA>AAA	p.E180K	SPOCK3_uc011cjp.1_Missense_Mutation_p.E177K|SPOCK3_uc011cjq.1_Missense_Mutation_p.E189K|SPOCK3_uc011cjr.1_Missense_Mutation_p.E60K|SPOCK3_uc003irj.1_Missense_Mutation_p.E177K|SPOCK3_uc011cjs.1_Missense_Mutation_p.E129K|SPOCK3_uc011cjt.1_Missense_Mutation_p.E88K|SPOCK3_uc011cju.1_Missense_Mutation_p.E73K|SPOCK3_uc011cjv.1_Missense_Mutation_p.E82K|SPOCK3_uc003irk.3_Missense_Mutation_p.E177K|SPOCK3_uc011cjw.1_RNA	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	180	Kazal-like.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		CAATGTCCTTCACATTTGACT	0.323													48	58					0	0	0.003610	0	0
DDX60L	91351	broad.mit.edu	37	4	169344861	169344861	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:169344861C>T	uc003irq.3	-	15	2216	c.1995G>A	c.(1993-1995)GAG>GAA	p.E665E	DDX60L_uc003irr.1_Silent_p.E665E|DDX60L_uc003irs.1_Silent_p.E392E	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	665							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CTGGGTATCTCTCCAGGAGTG	0.313													13	29					0	0	0.004990	0	0
SH3RF1	57630	broad.mit.edu	37	4	170077708	170077708	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:170077708G>A	uc003isa.1	-	3	851	c.516C>T	c.(514-516)TAC>TAT	p.Y172Y	SH3RF1_uc010irc.1_5'UTR	NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	172	SH3 1.					Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		CTTCCCCATGGTACCAATTTT	0.428													46	66					0	0	0.003610	0	0
NEK1	4750	broad.mit.edu	37	4	170322805	170322805	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:170322805G>T	uc003isb.1	-	31	3989	c.3497C>A	c.(3496-3498)TCA>TAA	p.S1166*	NEK1_uc003isc.1_Nonsense_Mutation_p.S1122*|NEK1_uc003isd.1_Nonsense_Mutation_p.S1194*|NEK1_uc003ise.1_Nonsense_Mutation_p.S1150*|NEK1_uc003isf.1_Nonsense_Mutation_p.S1097*	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	1166					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		TCATGCACCTGAGTGCCATTC	0.408													8	199					0.00307968	0.00528618	0.003080	1	0
MFAP3L	9848	broad.mit.edu	37	4	170912661	170912661	+	Silent	SNP	G	A	A	rs148626017		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:170912661G>A	uc003isp.3	-	3	1276	c.1098C>T	c.(1096-1098)ACC>ACT	p.T366T	MFAP3L_uc003isn.3_Silent_p.T263T	NM_021647	NP_067679	O75121	MFA3L_HUMAN	microfibrillar-associated protein 3-like isoform	366	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0201)|LUSC - Lung squamous cell carcinoma(193;0.116)		ATGTTAGCTCGGTGGACGTGA	0.512													38	48					0	0	0.001706	0	0
SAP30	8819	broad.mit.edu	37	4	174292510	174292510	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:174292510C>T	uc003itd.2	+	1	418	c.177C>T	c.(175-177)GCC>GCT	p.A59A		NM_003864	NP_003855	O75446	SAP30_HUMAN	Sin3A-associated protein, 30kDa	59	Interaction with NCOR1 (By similarity).|Ala-rich.				transcription, DNA-dependent	histone deacetylase complex	DNA binding|metal ion binding|protein binding|transcription corepressor activity			ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.15e-17)|Epithelial(43;4.33e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.62e-09)|STAD - Stomach adenocarcinoma(60;0.00278)|GBM - Glioblastoma multiforme(59;0.00659)|LUSC - Lung squamous cell carcinoma(193;0.0919)		cgggggcggcCGGGCCGGGCC	0.358													5	4					0	0	0.000602	0	0
HAND2	9464	broad.mit.edu	37	4	174450078	174450078	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:174450078T>A	uc003ith.1	-	1	1301	c.363A>T	c.(361-363)GAA>GAT	p.E121D	NBLA00301_uc011ckd.1_5'Flank|NBLA00301_uc003itl.3_5'Flank|NBLA00301_uc003itj.2_5'Flank|NBLA00301_uc010irf.2_5'Flank|NBLA00301_uc010irg.2_5'Flank|NBLA00301_uc010irh.2_5'Flank|NBLA00301_uc010iri.2_5'Flank|NBLA00301_uc010irj.2_5'Flank|NBLA00301_uc010irk.2_5'Flank|NBLA00301_uc010irl.2_5'Flank|NBLA00301_uc010irm.2_5'Flank|NBLA00301_uc010irn.2_5'Flank|NBLA00301_uc003itk.2_5'Flank|HAND2_uc003itg.1_Missense_Mutation_p.T87S|HAND2_uc010ire.1_Missense_Mutation_p.E121D	NM_021973	NP_068808	P61296	HAND2_HUMAN	basic helix-loop-helix transcription factor	121	Helix-loop-helix motif.				adult heart development|angiogenesis|apoptosis|cardiac neural crest cell development involved in outflow tract morphogenesis|heart looping|in utero embryonic development|negative regulation of cardiac muscle cell apoptosis|noradrenergic neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|regulation of secondary heart field cardioblast proliferation|thymus development	nuclear chromatin|transcription factor complex	activating transcription factor binding|protein homodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|transcription coactivator activity	p.E121K(1)		skin(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.37e-18)|Epithelial(43;5.5e-17)|OV - Ovarian serous cystadenocarcinoma(60;3.3e-10)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		ACTCGCGCAGTTCGGCGAAGG	0.537													34	53					0	0	0.003755	0	0
ADAM29	11086	broad.mit.edu	37	4	175898030	175898030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:175898030G>A	uc003iuc.2	+	5	2024	c.1354G>A	c.(1354-1356)GGG>AGG	p.G452R	ADAM29_uc003iud.2_Missense_Mutation_p.G452R|ADAM29_uc010irr.2_Missense_Mutation_p.G452R|ADAM29_uc011cki.1_Missense_Mutation_p.G452R	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	452	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CCTACCATCAGGGAAAGTGTG	0.438													22	32					0	0	0.001523	0	0
LOC285501	285501	broad.mit.edu	37	4	178897069	178897069	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:178897069C>T	uc010iru.2	+	5		c.738C>T				NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		GTGTCTGATTCTCTGAAGTAT	0.388													64	99					0	0	0.003610	0	0
ODZ3	55714	broad.mit.edu	37	4	183245250	183245251	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:183245250_183245251CC>TT	uc003ivd.1	+	1	114_115	c.77_78CC>TT	c.(76-78)TCC>TTT	p.S26F	ODZ3_uc010irv.1_Missense_Mutation_p.S26F	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	26	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TACACAAATTCCTCCGCAGACA	0.51													12	18					0	0	0.004672	0	0
ODZ3	55714	broad.mit.edu	37	4	183245390	183245390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:183245390G>A	uc003ivd.1	+	1	254	c.217G>A	c.(217-219)GAG>AAG	p.E73K	ODZ3_uc010irv.1_Missense_Mutation_p.E73K	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	73	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGAAGCAGACGAGTTCACTAG	0.458													22	24					0	0	0.003330	0	0
ODZ3	55714	broad.mit.edu	37	4	183650188	183650188	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:183650188G>A	uc003ivd.1	+	13	2476	c.2439G>A	c.(2437-2439)CGG>CGA	p.R813R	ODZ3_uc003ive.1_Silent_p.R219R	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	813	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CCTATTGTCGGGGACTGCCGG	0.478													17	35					0	0	0.004990	0	0
ODZ3	55714	broad.mit.edu	37	4	183673091	183673091	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:183673091C>T	uc003ivd.1	+	19	3805	c.3768C>T	c.(3766-3768)GTC>GTT	p.V1256V	ODZ3_uc003ive.1_Silent_p.V669V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1256	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATGCAGAAGTCGTCGCAGGGA	0.537													15	22					0	0	0.004007	0	0
ODZ3	55714	broad.mit.edu	37	4	183674674	183674674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:183674674G>A	uc003ivd.1	+	20	3971	c.3934G>A	c.(3934-3936)GGA>AGA	p.G1312R	ODZ3_uc003ive.1_Missense_Mutation_p.G725R	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1312	NHL 2.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TGACCAAAATGGAATCATATC	0.383													24	37					0	0	0.002299	0	0
CCDC110	256309	broad.mit.edu	37	4	186380586	186380586	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:186380586G>A	uc003ixu.3	-	6	1231	c.1155C>T	c.(1153-1155)CTC>CTT	p.L385L	CCDC110_uc003ixv.3_Silent_p.L348L|CCDC110_uc011ckt.1_Silent_p.L385L	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	385						nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		TTGTTTGGTCGAGGAAGGACA	0.303													68	113					0	0	0.003610	0	0
CCDC110	256309	broad.mit.edu	37	4	186381301	186381301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:186381301C>T	uc003ixu.3	-	6	516	c.440G>A	c.(439-441)AGT>AAT	p.S147N	CCDC110_uc003ixv.3_Missense_Mutation_p.S110N|CCDC110_uc011ckt.1_Missense_Mutation_p.S147N	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	147						nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		ACTATCACCACTTAATTTTTC	0.373													29	52					0	0	0.001512	0	0
TLR3	7098	broad.mit.edu	37	4	187005059	187005059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:187005059G>A	uc003iyq.2	+	4	2320	c.2219G>A	c.(2218-2220)CGA>CAA	p.R740Q	TLR3_uc011ckz.1_Missense_Mutation_p.R463Q|TLR3_uc003iyr.2_Missense_Mutation_p.R463Q	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	740	Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TCAGTACATCGAGTTCTTGGT	0.348													66	100					0	0	0.003610	0	0
KLKB1	3818	broad.mit.edu	37	4	187172987	187172987	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:187172987G>A	uc003iyy.2	+	10	1187	c.1116G>A	c.(1114-1116)TTG>TTA	p.L372L	KLKB1_uc011clc.1_Silent_p.L170L|KLKB1_uc011cld.1_Silent_p.L334L	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	372	Apple 4.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		GTTACTCTTTGAGATTGTGTA	0.423													36	60					0	0	0.004878	0	0
FAT1	2195	broad.mit.edu	37	4	187628027	187628027	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:187628027G>A	uc003izf.2	-	2	3143	c.2955C>T	c.(2953-2955)ATC>ATT	p.I985I	FAT1_uc010iso.1_Silent_p.I985I	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	985	Extracellular (Potential).|Cadherin 8.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ACTGCTGGACGATCCTAACTG	0.468										HNSCC(5;0.00058)			43	51					0	0	0.001706	0	0
ZFP42	132625	broad.mit.edu	37	4	188924607	188924607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:188924607G>A	uc003izg.1	+	3	891	c.646G>A	c.(646-648)GAC>AAC	p.D216N	ZFP42_uc003izh.1_Missense_Mutation_p.D216N|ZFP42_uc003izi.1_Missense_Mutation_p.D216N	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	216					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		TGGTCCCCGAGACCACGTCTG	0.502													35	60					0	0	0.001287	0	0
ZFP42	132625	broad.mit.edu	37	4	188924676	188924676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:188924676C>T	uc003izg.1	+	3	960	c.715C>T	c.(715-717)CAT>TAT	p.H239Y	ZFP42_uc003izh.1_Missense_Mutation_p.H239Y|ZFP42_uc003izi.1_Missense_Mutation_p.H239Y	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	239	C2H2-type 2.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		TTTCCTGGTTCATACTGGAGA	0.517													29	25					0	0	0.001512	0	0
ZFP42	132625	broad.mit.edu	37	4	188924786	188924786	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:188924786C>T	uc003izg.1	+	3	1070	c.825C>T	c.(823-825)TTC>TTT	p.F275F	ZFP42_uc003izh.1_Silent_p.F275F|ZFP42_uc003izi.1_Silent_p.F275F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	275	C2H2-type 4.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		AGAAACGTTTCGTGTGTCCCT	0.488													27	32					0	0	0.001271	0	0
TRIML2	205860	broad.mit.edu	37	4	189020258	189020258	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:189020258G>A	uc003izl.2	-	4	438	c.402C>T	c.(400-402)GTC>GTT	p.V134V	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Silent_p.V184V|TRIML2_uc011clf.1_Silent_p.V184V	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	134	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GGAGGCTGCGGACCTGTTCAG	0.483													20	51					0	0	0.001523	0	0
TRIML1	339976	broad.mit.edu	37	4	189060889	189060889	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:189060889C>T	uc003izm.1	+	1	292	c.177C>T	c.(175-177)ACC>ACT	p.T59T		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	59					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCTGGAGGACCTTGGAGGGCC	0.602													36	46					0	0	0.004289	0	0
FRG1	2483	broad.mit.edu	37	4	190873350	190873350	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:190873350T>A	uc003izs.2	+	3	358	c.167T>A	c.(166-168)ATT>AAT	p.I56N		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	56					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		TTTGGTGAAATTTCAGGAACC	0.338													52	98					0	0	0.003610	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190905468	190905468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:190905468C>T	uc011clg.1	-	3	219	c.216G>A	c.(214-216)ATG>ATA	p.M72I		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	73					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		GCACAGAGTCCATGGTGCCCG	0.692													21	26					0	0	0.001061	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	161969	161969	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:161969C>T	uc003jak.2	+	10	1541	c.1491C>T	c.(1489-1491)TTC>TTT	p.F497F		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	497					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TCCAGGATTTCAGAAGGGGCC	0.587													13	25					0	0	0.002450	0	0
TPPP	11076	broad.mit.edu	37	5	677968	677968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:677968C>T	uc003jbg.3	-	1	926	c.208G>A	c.(208-210)GAG>AAG	p.E70K	TPPP_uc003jbh.3_Missense_Mutation_p.E70K	NM_007030	NP_008961	O94811	TPPP_HUMAN	tubulin polymerization promoting protein	70	Mediates interaction with LIMK1.				microtubule bundle formation|microtubule polymerization|positive regulation of protein polymerization	nucleus|perinuclear region of cytoplasm|soluble fraction	calcium ion binding|microtubule binding				0		Ovarian(839;0.0563)	Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)	GBM - Glioblastoma multiforme(108;0.0191)		CCGTGCATCTCCCTCCCGGTG	0.652													13	19					0	0	0.001855	0	0
BRD9	65980	broad.mit.edu	37	5	865553	865553	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:865553A>T	uc003jbq.2	-	15	1836	c.1669T>A	c.(1669-1671)TCC>ACC	p.S557T	BRD9_uc003jbl.2_Missense_Mutation_p.S441T|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Missense_Mutation_p.S504T|BRD9_uc003jbo.2_Missense_Mutation_p.S461T	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	557							nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			TCCCTCTCGGAGGCGTTGGAC	0.662													15	47					0	0	0.004990	0	0
BRD9	65980	broad.mit.edu	37	5	865593	865593	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:865593G>A	uc003jbq.2	-	15	1796	c.1629C>T	c.(1627-1629)GGC>GGT	p.G543G	BRD9_uc003jbl.2_Silent_p.G427G|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Silent_p.G490G|BRD9_uc003jbo.2_Silent_p.G447G	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	543							nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			ACGGCCGAGAGCCGCCGCGCT	0.647													37	53					0	0	0.001287	0	0
SLC6A19	340024	broad.mit.edu	37	5	1219161	1219161	+	Silent	SNP	C	T	T	rs150521851		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:1219161C>T	uc003jbw.3	+	9	1373	c.1317C>T	c.(1315-1317)GTC>GTT	p.V439V		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	439	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TGGAGGGCGTCGTTGTGCCCC	0.587													8	14					0	0	0.003080	0	0
SLC6A19	340024	broad.mit.edu	37	5	1221377	1221377	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:1221377C>T	uc003jbw.3	+	11	1706	c.1650C>T	c.(1648-1650)TTC>TTT	p.F550F		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	550	Helical; Name=11; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCTTCTTCTTCGTGGTAGAGG	0.582													13	20					0	0	0.001855	0	0
SLC6A18	348932	broad.mit.edu	37	5	1232356	1232356	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:1232356C>T	uc003jby.1	+	2	306	c.183C>T	c.(181-183)GTC>GTT	p.V61V		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	61	Helical; Name=2; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCCCCTACGTCATCGCGCTGG	0.706													5	13					0	0	0.001168	0	0
IRX4	50805	broad.mit.edu	37	5	1879657	1879657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:1879657C>T	uc003jcz.2	-	4	816	c.697G>A	c.(697-699)GAG>AAG	p.E233K	IRX4_uc011cmf.1_Missense_Mutation_p.E94K	NM_016358	NP_057442	P78413	IRX4_HUMAN	iroquois homeobox 4	233					heart development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(108;0.242)		tcccgcgcctcctcctcgccc	0.483													9	9					0	0	0.004482	0	0
NSUN2	54888	broad.mit.edu	37	5	6620225	6620225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:6620225G>A	uc003jdu.2	-	7	874	c.809C>T	c.(808-810)CCT>CTT	p.P270L	NSUN2_uc003jdt.2_Missense_Mutation_p.P34L|NSUN2_uc011cmk.1_Missense_Mutation_p.P235L|NSUN2_uc003jdv.2_Missense_Mutation_p.P34L	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	270						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						ATACCTGCAAGGGACATCACA	0.408													32	38					0	0	0.001786	0	0
ADCY2	108	broad.mit.edu	37	5	7817040	7817041	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:7817040_7817041GG>AT	uc003jdz.1	+	23	3012_3013	c.2945_2946GG>AT	c.(2944-2946)GGG>GAT	p.G982D	ADCY2_uc011cmo.1_Missense_Mutation_p.G802D|ADCY2_uc010itm.1_Missense_Mutation_p.G178D	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	982	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GCCCTGGTAGGGAAGCTGGATG	0.51											OREG0016499	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	34					0	0	0.004672	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629397	9629397	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:9629397G>A	uc003jem.1	-	1	1067	c.748C>T	c.(748-750)CTA>TTA	p.L250L		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	250	Extracellular (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						TGAAACTTTAGAGAAGAGAGA	0.433													22	55					0	0	0.001882	0	0
DNAH5	1767	broad.mit.edu	37	5	13717498	13717498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13717498C>T	uc003jfd.2	-	73	12673	c.12631G>A	c.(12631-12633)GAA>AAA	p.E4211K	DNAH5_uc003jfc.2_Missense_Mutation_p.E379K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4211	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGGTTAAATTCGTAGGGGATA	0.542									Kartagener_syndrome				12	16					0	0	0.001368	0	0
DNAH5	1767	broad.mit.edu	37	5	13729617	13729617	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13729617G>A	uc003jfd.2	-	69	11856	c.11814C>T	c.(11812-11814)ATC>ATT	p.I3938I	DNAH5_uc003jfc.2_Silent_p.I106I	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3938					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTATGTCCAGGATCCATTTTG	0.368									Kartagener_syndrome				35	52					0	0	0.004878	0	0
DNAH5	1767	broad.mit.edu	37	5	13735964	13735964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13735964G>A	uc003jfd.2	-	67	11575	c.11533C>T	c.(11533-11535)CGC>TGC	p.R3845C	DNAH5_uc003jfc.2_Missense_Mutation_p.R13C	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3845					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAAACTGGCGAAGCGAAGTC	0.473									Kartagener_syndrome				39	54					0	0	0.001951	0	0
DNAH5	1767	broad.mit.edu	37	5	13753442	13753442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13753442C>T	uc003jfd.2	-	63	10814	c.10772G>A	c.(10771-10773)GGA>GAA	p.G3591E	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3591	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GACAATAATTCCATTTTGAAT	0.393									Kartagener_syndrome				35	62					0	0	0.005524	0	0
DNAH5	1767	broad.mit.edu	37	5	13786458	13786458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13786458C>T	uc003jfd.2	-	52	8692	c.8650G>A	c.(8650-8652)GAA>AAA	p.E2884K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2884					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAGATGTTTCACCTTTGGTG	0.358									Kartagener_syndrome				32	25					0	0	0.003755	0	0
DNAH5	1767	broad.mit.edu	37	5	13814719	13814719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13814719G>A	uc003jfd.2	-	43	7267	c.7225C>T	c.(7225-7227)CTT>TTT	p.L2409F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2409	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TATACCTCAAGAATAGGACTC	0.274									Kartagener_syndrome				16	16					0	0	0.003163	0	0
DNAH5	1767	broad.mit.edu	37	5	13841216	13841216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13841216C>T	uc003jfd.2	-	34	5550	c.5508G>A	c.(5506-5508)ATG>ATA	p.M1836I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1836	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTGTCCATATCATCTGAATTC	0.323									Kartagener_syndrome				21	46					0	0	0.003330	0	0
DNAH5	1767	broad.mit.edu	37	5	13885242	13885242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13885242C>T	uc003jfd.2	-	19	2881	c.2839G>A	c.(2839-2841)GAA>AAA	p.E947K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	947	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATCTCAGTTTCTTTCTTTTTC	0.428									Kartagener_syndrome				31	38					0	0	0.002836	0	0
DNAH5	1767	broad.mit.edu	37	5	13911582	13911582	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13911582C>T	uc003jfd.2	-	12	1599	c.1557G>A	c.(1555-1557)AAG>AAA	p.K519K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	519	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATTCCTTTTTCTTTATGGTTG	0.318									Kartagener_syndrome				10	91					0	0	0.000673	0	0
DNAH5	1767	broad.mit.edu	37	5	13914692	13914692	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13914692G>A	uc003jfd.2	-	10	1299	c.1257C>T	c.(1255-1257)TCC>TCT	p.S419S	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	419	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTTCCAGATGGAAGCGGTTC	0.343									Kartagener_syndrome				33	53					0	0	0.002445	0	0
DNAH5	1767	broad.mit.edu	37	5	13923485	13923485	+	Silent	SNP	G	A	A	rs145920072	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:13923485G>A	uc003jfd.2	-	4	384	c.342C>T	c.(340-342)TTC>TTT	p.F114F	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	114	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTCGGTCACGAACACCTTAG	0.433									Kartagener_syndrome				40	69					0	0	0.001287	0	0
CDH18	1016	broad.mit.edu	37	5	19838955	19838955	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:19838955G>A	uc003jgc.2	-	2	518	c.141C>T	c.(139-141)GTC>GTT	p.V47V	CDH18_uc003jgd.2_Silent_p.V47V|CDH18_uc011cnm.1_Silent_p.V47V	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	47					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GACGATGATGGACTTCGGTTT	0.428													29	39					0	0	0.001512	0	0
CDH12	1010	broad.mit.edu	37	5	21752007	21752007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:21752007C>T	uc010iuc.2	-	12	2682	c.2224G>A	c.(2224-2226)GAA>AAA	p.E742K	CDH12_uc011cno.1_Missense_Mutation_p.E702K|CDH12_uc003jgk.2_Missense_Mutation_p.E742K|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	742	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						CCACTCCCTTCGTAGGCATAT	0.507										HNSCC(59;0.17)			37	57					0	0	0.002222	0	0
CDH12	1010	broad.mit.edu	37	5	21817074	21817074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:21817074C>T	uc010iuc.2	-	6	1440	c.982G>A	c.(982-984)GGA>AGA	p.G328R	CDH12_uc011cno.1_Missense_Mutation_p.G288R|CDH12_uc003jgk.2_Missense_Mutation_p.G328R	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	328	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TTGATGACTCCCTCTTGTGTA	0.308										HNSCC(59;0.17)			51	99					0	0	0.003610	0	0
CDH12	1010	broad.mit.edu	37	5	21975486	21975487	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:21975486_21975487GG>AA	uc010iuc.2	-	3	697_698	c.239_240CC>TT	c.(238-240)TCC>TTT	p.S80F	CDH12_uc011cno.1_Missense_Mutation_p.S80F|CDH12_uc003jgk.2_Missense_Mutation_p.S80F	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	80	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TGTCTAAGTCGGAATGGAGCTT	0.347										HNSCC(59;0.17)			6	84					0	0	0.004672	0	0
CDH10	1008	broad.mit.edu	37	5	24491695	24491695	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:24491695G>A	uc003jgr.1	-	11	2198	c.1866C>T	c.(1864-1866)ATC>ATT	p.I622I	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	622	Helical; (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CCAGTAGAATGATGATGCAGA	0.488										HNSCC(23;0.051)			35	43					0	0	0.004878	0	0
CDH10	1008	broad.mit.edu	37	5	24593471	24593471	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:24593471C>T	uc003jgr.1	-	2	461	c.129G>A	c.(127-129)AGG>AGA	p.R43R	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	43					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TGCCATCACTCCTTGGTACAC	0.408										HNSCC(23;0.051)			49	94					0	0	0.003610	0	0
CDH9	1007	broad.mit.edu	37	5	26881298	26881298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:26881298G>A	uc003jgs.1	-	12	2486	c.2317C>T	c.(2317-2319)CGT>TGT	p.R773C	CDH9_uc011cnv.1_Missense_Mutation_p.R366C	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	773	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTTTTGAAACGAGGCCCCCAG	0.408													33	69					0	0	0.002445	0	0
CDH9	1007	broad.mit.edu	37	5	26889965	26889965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:26889965C>T	uc003jgs.1	-	9	1661	c.1492G>A	c.(1492-1494)GAA>AAA	p.E498K	CDH9_uc011cnv.1_Missense_Mutation_p.E91K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	498	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTTGCATTTTCACAAACAAAT	0.313													9	49					0	0	0.004482	0	0
CDH9	1007	broad.mit.edu	37	5	26903769	26903769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:26903769C>T	uc003jgs.1	-	6	1145	c.976G>A	c.(976-978)GAA>AAA	p.E326K	CDH9_uc010iug.2_Missense_Mutation_p.E326K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	326	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ATAATCCCTTCCTGTGTATCC	0.398													67	85					0	0	0.003610	0	0
CDH9	1007	broad.mit.edu	37	5	26906079	26906079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:26906079C>T	uc003jgs.1	-	5	969	c.800G>A	c.(799-801)CGA>CAA	p.R267Q	CDH9_uc010iug.2_Missense_Mutation_p.R267Q	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	267	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CTGGGGAAATCGAGGAGGGTT	0.428													72	109					0	0	0.003610	0	0
CDH6	1004	broad.mit.edu	37	5	31267717	31267718	+	Missense_Mutation	DNP	AT	TC	TC			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:31267717_31267718AT>TC	uc003jhe.1	+	2	463_464	c.137_138AT>TC	c.(136-138)AAT>ATC	p.N46I	CDH6_uc003jhd.1_Missense_Mutation_p.N46I	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	46					adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AACAGCAAAAATGAGCTGAACC	0.49													6	86					0	0	0.004672	0	0
CDH6	1004	broad.mit.edu	37	5	31305390	31305390	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:31305390T>C	uc003jhe.1	+	7	1435	c.1109T>C	c.(1108-1110)GTT>GCT	p.V370A	CDH6_uc003jhd.1_Missense_Mutation_p.V370A	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	370	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TCAGCCACGGTTAGAATTGTG	0.428													29	59					0	0	0.002445	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576786	33576786	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:33576786C>T	uc003jia.1	-	19	3508	c.3345G>A	c.(3343-3345)TCG>TCA	p.S1115S	ADAMTS12_uc010iuq.1_Silent_p.S1030S	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1115	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GGCCTCCCTCCGAGGTAGGAC	0.493										HNSCC(64;0.19)			27	49					0	0	0.001061	0	0
DNAJC21	134218	broad.mit.edu	37	5	34937696	34937696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:34937696C>T	uc003jjc.2	+	5	931	c.704C>T	c.(703-705)GCC>GTC	p.A235V	DNAJC21_uc003jjb.2_Missense_Mutation_p.A235V|DNAJC21_uc010iuu.1_Missense_Mutation_p.A119V	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	235	Glu-rich.				protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			GCGAGGAAAGCCGAAGAGATG	0.542													33	52					0	0	0.003271	0	0
PRLR	5618	broad.mit.edu	37	5	35065964	35065964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:35065964C>T	uc003jjm.2	-	10	1626	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.E265K	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	366	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GCCTGGGGTTCCTCACACTTT	0.527													16	26					0	0	0.004990	0	0
SPEF2	79925	broad.mit.edu	37	5	35659301	35659301	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:35659301C>T	uc003jjo.2	+	8	1270	c.1159C>T	c.(1159-1161)CGA>TGA	p.R387*	SPEF2_uc003jjn.1_Nonsense_Mutation_p.R387*|SPEF2_uc003jjq.3_Nonsense_Mutation_p.R387*	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	387	Potential.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGCTCTTGATCGAGAAGCGGT	0.363													19	34					0	0	0.002299	0	0
SPEF2	79925	broad.mit.edu	37	5	35814644	35814644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:35814644G>A	uc003jjo.2	+	37	5569	c.5458G>A	c.(5458-5460)GAA>AAA	p.E1820K	SPEF2_uc003jjr.2_Missense_Mutation_p.E875K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1820					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACATACAGAGGAAAAGAAATG	0.313													34	54					0	0	0.001287	0	0
IL7R	3575	broad.mit.edu	37	5	35867441	35867441	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:35867441C>T	uc003jjs.2	+	3	344	c.255C>T	c.(253-255)TTC>TTT	p.F85F	IL7R_uc011coo.1_Silent_p.F85F|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	85	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GCCTGAATTTCAGGAAACTAC	0.403													29	47					0	0	0.002836	0	0
IL7R	3575	broad.mit.edu	37	5	35875626	35875626	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:35875626C>T	uc003jjs.2	+	7	902	c.813C>T	c.(811-813)ATC>ATT	p.I271I	IL7R_uc011coo.1_Missense_Mutation_p.S240L|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	271	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TTAAGCCTATCGTATGGCCCA	0.398													26	26					0	0	0.001786	0	0
CAPSL	133690	broad.mit.edu	37	5	35910100	35910100	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:35910100T>A	uc003jjt.1	-	4	488	c.393A>T	c.(391-393)ATA>ATT	p.I131I	CAPSL_uc003jju.1_Silent_p.I131I	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	131	EF-hand 3.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			CTTCGATTGTTATAACACCAT	0.378													45	71					0	0	0.002852	0	0
UGT3A2	167127	broad.mit.edu	37	5	36037922	36037922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:36037922C>T	uc003jjz.1	-	6	1365	c.1272G>A	c.(1270-1272)ATG>ATA	p.M424I	UGT3A2_uc011cos.1_Missense_Mutation_p.M390I|UGT3A2_uc011cot.1_Missense_Mutation_p.M122I	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	424	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGATTTGTTTCATCTTAAGAG	0.428													37	90					0	0	0.003610	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049382	36049382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:36049382G>A	uc003jjz.1	-	4	545	c.452C>T	c.(451-453)CCT>CTT	p.P151L	UGT3A2_uc011cos.1_Missense_Mutation_p.P117L|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	151	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AATCAGGAAAGGACAGTAGTC	0.408													30	43					0	0	0.001786	0	0
LMBRD2	92255	broad.mit.edu	37	5	36142664	36142664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:36142664G>A	uc003jkb.1	-	3	627	c.212C>T	c.(211-213)TCA>TTA	p.S71L		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	71	Extracellular (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGGAGGGCTTGAATTTGCAGC	0.363													49	71					0	0	0.003610	0	0
NIPBL	25836	broad.mit.edu	37	5	36984971	36984971	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:36984971C>A	uc003jkl.3	+	10	2188	c.1689C>A	c.(1687-1689)TCC>TCA	p.S563S	NIPBL_uc003jkk.3_Silent_p.S563S|NIPBL_uc003jkm.1_Silent_p.S442S	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	563					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			ATTCAGACTCCATAAAAAAGC	0.408													17	153					0.000566183	0.000973799	0.004990	1	0
EGFLAM	133584	broad.mit.edu	37	5	38370452	38370452	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:38370452C>T	uc003jlc.1	+	6	924	c.600C>T	c.(598-600)TCC>TCT	p.S200S	EGFLAM_uc003jlb.1_Silent_p.S200S	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	200	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					AGATGGACTCCATGGTTATCA	0.498													34	38					0	0	0.001485	0	0
EGFLAM	133584	broad.mit.edu	37	5	38370519	38370519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:38370519G>A	uc003jlc.1	+	6	991	c.667G>A	c.(667-669)GGC>AGC	p.G223S	EGFLAM_uc003jlb.1_Missense_Mutation_p.G223S	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	223	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GAATTCCCATGGCCCCAGCCC	0.577													10	23					0	0	0.000673	0	0
EGFLAM	133584	broad.mit.edu	37	5	38407025	38407025	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:38407025C>T	uc003jlc.1	+	8	1248	c.924C>T	c.(922-924)CTC>CTT	p.L308L	EGFLAM_uc003jlb.1_Silent_p.L308L|EGFLAM_uc003jle.1_Silent_p.L74L|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	308						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TTTCTAGGCTCATCCCCCCTA	0.478													29	41					0	0	0.001512	0	0
EGFLAM	133584	broad.mit.edu	37	5	38407156	38407156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:38407156G>A	uc003jlc.1	+	8	1379	c.1055G>A	c.(1054-1056)TGC>TAC	p.C352Y	EGFLAM_uc003jlb.1_Missense_Mutation_p.C352Y|EGFLAM_uc003jle.1_Missense_Mutation_p.C118Y|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	352	EGF-like 1.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GAAACTCTCTGCTCTGCTGAC	0.562													30	26					0	0	0.001512	0	0
EGFLAM	133584	broad.mit.edu	37	5	38418293	38418293	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:38418293G>A	uc003jlc.1	+	12	1944	c.1620G>A	c.(1618-1620)GTG>GTA	p.V540V	EGFLAM_uc003jlb.1_Silent_p.V540V|EGFLAM_uc003jle.1_Silent_p.V306V|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	540	Laminin G-like 1.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CGCTCGCTGTGAATGGGAGGA	0.572													21	25					0	0	0.001523	0	0
LIFR	3977	broad.mit.edu	37	5	38481702	38481702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:38481702C>T	uc010ive.1	-	20	3621	c.3289G>A	c.(3289-3291)GAT>AAT	p.D1097N	LIFR_uc003jli.2_Missense_Mutation_p.D1097N	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	1097	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CACTGTTAATCGTTTGGTTTG	0.423			T	PLAG1	salivary adenoma								45	62					0	0	0.003610	0	0
OSMR	9180	broad.mit.edu	37	5	38869153	38869153	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:38869153C>A	uc003jln.1	+	2	374	c.7C>A	c.(7-9)CTA>ATA	p.L3I	OSMR_uc003jlm.1_Missense_Mutation_p.L3I	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	3					cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					ACTGATGGCTCTATTTGCAGT	0.318													46	56					2.40228e-13	4.16369e-13	0.003214	1	0
FYB	2533	broad.mit.edu	37	5	39119071	39119071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:39119071C>T	uc003jls.2	-	14	2235	c.2168G>A	c.(2167-2169)GGA>GAA	p.G723E	FYB_uc003jlt.2_Missense_Mutation_p.G769E|FYB_uc003jlu.2_Missense_Mutation_p.G723E|FYB_uc011cpl.1_Missense_Mutation_p.G779E	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	723					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			ATCTCTGGTTCCCCACTTTTT	0.323													15	32					0	0	0.002450	0	0
DAB2	1601	broad.mit.edu	37	5	39375143	39375143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:39375143G>A	uc003jlx.2	-	14	2822	c.2291C>T	c.(2290-2292)CCA>CTA	p.P764L	DAB2_uc003jlw.2_Missense_Mutation_p.P743L	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	764	Required for interaction with MYO6 (By similarity).				cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			ATTTCCAAATGGATCCCTATA	0.353													68	78					0	0	0.003610	0	0
DAB2	1601	broad.mit.edu	37	5	39377003	39377003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:39377003G>A	uc003jlx.2	-	12	2417	c.1886C>T	c.(1885-1887)CCC>CTC	p.P629L	DAB2_uc003jlw.2_Missense_Mutation_p.P608L	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	629					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GATGTCCTTGGGAGGGCCAGC	0.527											OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	52	75					0	0	0.003610	0	0
PTGER4	5734	broad.mit.edu	37	5	40681542	40681542	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:40681542C>T	uc003jlz.2	+	2	1039	c.447C>T	c.(445-447)CTC>CTT	p.L149L		NM_000958	NP_000949	P35408	PE2R4_HUMAN	prostaglandin E receptor 4, subtype EP4	149	Helical; Name=4; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|immune response	integral to membrane|plasma membrane	prostaglandin E receptor activity			lung(2)	2						CCAACGTGCTCTTTTGCGCGC	0.602											OREG0016588	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	44					0	0	0.004289	0	0
C7	730	broad.mit.edu	37	5	40955600	40955600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:40955600G>A	uc003jmh.2	+	10	1319	c.1205G>A	c.(1204-1206)CGA>CAA	p.R402Q	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	402	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				AACAAAAGGCGATATTCTGCC	0.438													56	95					0	0	0.003610	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000375	41000375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41000375C>T	uc003jmj.3	-	39	4919	c.4429G>A	c.(4429-4431)GAT>AAT	p.D1477N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.D1032N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1477							binding			ovary(6)|central_nervous_system(2)	8						AGATCCTGATCAAGGAGACGG	0.502													24	34					0	0	0.003330	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41052635	41052635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41052635C>T	uc003jmj.3	-	12	1652	c.1162G>A	c.(1162-1164)GAA>AAA	p.E388K	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	388							binding			ovary(6)|central_nervous_system(2)	8						TCCCGAGCTTCAATATAGGAC	0.408													31	37					0	0	0.001512	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41064653	41064653	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41064653G>A	uc003jmj.3	-	5	871	c.381C>T	c.(379-381)TTC>TTT	p.F127F		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	127							binding			ovary(6)|central_nervous_system(2)	8						TCATCATCATGAAAGGAATAC	0.473													9	26					0	0	0.000673	0	0
C6	729	broad.mit.edu	37	5	41159322	41159322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41159322G>A	uc003jmk.2	-	12	1928	c.1718C>T	c.(1717-1719)TCC>TTC	p.S573F	C6_uc003jml.1_Missense_Mutation_p.S573F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	573	TSP type-1 3.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GGTACTCCAGGAAGACCAACA	0.522													15	16					0	0	0.002450	0	0
C6	729	broad.mit.edu	37	5	41181500	41181500	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41181500A>T	uc003jmk.2	-	7	1098	c.888T>A	c.(886-888)AAT>AAA	p.N296K	C6_uc003jml.1_Missense_Mutation_p.N296K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	296	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TGAAGGCAGAATTATGGTTGA	0.348													51	82					0	0	0.003610	0	0
C6	729	broad.mit.edu	37	5	41195936	41195936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41195936C>T	uc003jmk.2	-	5	755	c.545G>A	c.(544-546)CGG>CAG	p.R182Q	C6_uc003jml.1_Missense_Mutation_p.R182Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	182	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATTATACTTCCGTGTGCATAC	0.443													32	50					0	0	0.002445	0	0
C6	729	broad.mit.edu	37	5	41203209	41203209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41203209C>T	uc003jmk.2	-	2	334	c.124G>A	c.(124-126)GGA>AGA	p.G42R	C6_uc003jml.1_Missense_Mutation_p.G42R	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	42	TSP type-1 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding	p.G42E(1)		ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CTCTGGGTTCCAGAATTGCAA	0.493													84	148					0	0	0.003610	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382494	41382494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41382494C>T	uc003jmm.1	-	2	348	c.246G>A	c.(244-246)ATG>ATA	p.M82I		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	82	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						CAGTAAAATTCATTGTCTGAG	0.453													25	43					0	0	0.002780	0	0
OXCT1	5019	broad.mit.edu	37	5	41801134	41801134	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:41801134G>A	uc003jmn.2	-	11	1420	c.1089C>T	c.(1087-1089)CTC>CTT	p.L363L		NM_000436	NP_000427	P55809	SCOT1_HUMAN	3-oxoacid CoA transferase 1 precursor	363					cellular lipid metabolic process|ketone body catabolic process	mitochondrial matrix	3-oxoacid CoA-transferase activity|protein homodimerization activity			ovary(2)|large_intestine(1)	3					Succinic acid(DB00139)	CTGCATTGATGAGATCTGCAT	0.358													22	40					0	0	0.003954	0	0
HCN1	348980	broad.mit.edu	37	5	45262428	45262428	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:45262428C>T	uc003jok.2	-	8	2293	c.2268G>A	c.(2266-2268)CAG>CAA	p.Q756Q		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	756	Gln-rich.|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TGCCAGGTGTCTGTGGCTGCG	0.438													16	23					0	0	0.004990	0	0
HCN1	348980	broad.mit.edu	37	5	45303941	45303941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:45303941C>T	uc003jok.2	-	6	1403	c.1378G>A	c.(1378-1380)GAG>AAG	p.E460K		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	460	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TTGACTATCTCCTAAAGATGT	0.333													45	75					0	0	0.003610	0	0
HCN1	348980	broad.mit.edu	37	5	45462053	45462053	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:45462053G>A	uc003jok.2	-	3	931	c.906C>T	c.(904-906)ATC>ATT	p.I302I		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	302	Helical; Name=Segment S5; (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GCATCATGCCGATGAGATTAA	0.393													20	23					0	0	0.001523	0	0
EMB	133418	broad.mit.edu	37	5	49706728	49706728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:49706728C>T	uc003jom.2	-	4	704	c.455G>A	c.(454-456)GGA>GAA	p.G152E	EMB_uc003jol.2_Missense_Mutation_p.G83E|EMB_uc011cpy.1_Missense_Mutation_p.G102E|EMB_uc010ivr.2_Missense_Mutation_p.G98E	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	152	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				ATTAAATGTTCCCCTTTGTTC	0.279													13	8					0	0	0.001855	0	0
GZMA	3001	broad.mit.edu	37	5	54403740	54403740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:54403740G>A	uc003jpm.2	+	3	371	c.334G>A	c.(334-336)GAA>AAA	p.E112K		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	112	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				AGCCACACGCGAAGGTGACCT	0.438													29	9					0	0	0.002836	0	0
DHX29	54505	broad.mit.edu	37	5	54565332	54565332	+	Missense_Mutation	SNP	G	A	A	rs141718719		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:54565332G>A	uc003jpx.2	-	21	3323	c.3203C>T	c.(3202-3204)CCG>CTG	p.P1068L	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	1068							ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				TTGGCCCAACGGAGTCAGTTT	0.443													19	8					0	0	0.000958	0	0
SKIV2L2	23517	broad.mit.edu	37	5	54646762	54646762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:54646762C>T	uc003jpy.3	+	13	1602	c.1336C>T	c.(1336-1338)CCT>TCT	p.P446S	SKIV2L2_uc011cqi.1_Missense_Mutation_p.P345S	NM_015360	NP_056175	P42285	SK2L2_HUMAN	superkiller viralicidic activity 2-like 2	446	Helicase C-terminal.				maturation of 5.8S rRNA	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(1)|skin(1)	2		Lung NSC(810;0.000744)|Breast(144;0.181)|Prostate(74;0.194)				ACATGTACTTCCTCTTTTGAA	0.294													43	13					0	0	0.003610	0	0
GPBP1	65056	broad.mit.edu	37	5	56542231	56542231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:56542231C>T	uc003jrh.3	+	7	1857	c.583C>T	c.(583-585)CCG>TCG	p.P195S	GPBP1_uc010iwg.2_Missense_Mutation_p.P215S|GPBP1_uc003jri.3_Missense_Mutation_p.P24S|GPBP1_uc003jrj.3_Missense_Mutation_p.P202S|GPBP1_uc003jrk.3_Missense_Mutation_p.P202S|GPBP1_uc003jrl.3_RNA	NM_022913	NP_075064	Q86WP2	GPBP1_HUMAN	GC-rich promoter binding protein 1 isoform 1	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			large_intestine(1)|central_nervous_system(1)	2		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		AGGAAATCTTCCGTCACAGCC	0.408													18	10					0	0	0.004990	0	0
HTR1A	3350	broad.mit.edu	37	5	63256842	63256842	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:63256842C>T	uc011cqt.1	-	1	705	c.705G>A	c.(703-705)AAG>AAA	p.K235K		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	235	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CCGCTCCGGTCTTCTCCACCT	0.612													26	11					0	0	0.001512	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64558777	64558777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:64558777C>T	uc003jtp.2	-	13	2447	c.1633G>A	c.(1633-1635)GGA>AGA	p.G545R	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.G166R	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	545	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		ACACAATCTCCCTGATAACAC	0.507													6	8					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	5	68902950	68902950	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:68902950G>A	uc010ixi.1	+	1		c.25G>A								Homo sapiens cDNA, FLJ18088.																		TCCTACTAAAGGACGGACAGA	0.398													28	70					0	0	0.003610	0	0
BDP1	55814	broad.mit.edu	37	5	70766290	70766290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:70766290C>T	uc003kbp.1	+	7	1251	c.988C>T	c.(988-990)CCT>TCT	p.P330S	BDP1_uc003kbn.1_Missense_Mutation_p.P330S|BDP1_uc003kbo.2_Missense_Mutation_p.P330S	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	330	Myb-like.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		ACAACTTTTTCCTCACAGAGC	0.318													23	7					0	0	0.005443	0	0
PTCD2	79810	broad.mit.edu	37	5	71634538	71634538	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:71634538C>T	uc003kcb.2	+	7	739	c.729C>T	c.(727-729)TTC>TTT	p.F243F	PTCD2_uc011csf.1_Silent_p.F53F|PTCD2_uc003kcc.2_Silent_p.F91F|PTCD2_uc011csg.1_Silent_p.F71F|PTCD2_uc011csh.1_Silent_p.F134F|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	243											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		CATCCTGTTTCGCTGTGGCAT	0.423													15	6					0	0	0.004007	0	0
ZNF366	167465	broad.mit.edu	37	5	71739960	71739960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:71739960C>T	uc003kce.1	-	5	2044	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	620					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TCCTCCTCTTCCTCCTCGTGG	0.652													49	18					0	0	0.003610	0	0
TMEM174	134288	broad.mit.edu	37	5	72469265	72469265	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:72469265C>T	uc010izc.2	+	1	243	c.195C>T	c.(193-195)GTC>GTT	p.V65V		NM_153217	NP_694949	Q8WUU8	TM174_HUMAN	transmembrane protein 174	65						integral to membrane				ovary(1)	1		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-54)		ACCAAGGTGTCTCCCACTTTG	0.537													31	11					0	0	0.001512	0	0
POLK	51426	broad.mit.edu	37	5	74848301	74848301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:74848301C>T	uc003kdw.2	+	3	236	c.140C>T	c.(139-141)TCC>TTC	p.S47F	POLK_uc003kdx.2_RNA|POLK_uc003kdy.2_RNA|POLK_uc003kdz.2_Missense_Mutation_p.S47F|POLK_uc003kea.2_Missense_Mutation_p.S47F|POLK_uc003keb.2_Missense_Mutation_p.S47F|POLK_uc010izq.2_Missense_Mutation_p.S47F|POLK_uc003kec.2_5'UTR|POLK_uc010izr.2_RNA|POLK_uc010izs.2_RNA|POLK_uc003ked.2_5'UTR|POLK_uc003kee.2_Missense_Mutation_p.S47F	NM_016218	NP_057302	Q9UBT6	POLK_HUMAN	DNA-directed DNA polymerase kappa	47					DNA replication|nucleotide-excision repair, DNA gap filling	nucleus	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|kidney(2)	4		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;2.9e-54)|all cancers(79;1.27e-42)		CCATAGGGGTCCAGATTTTAT	0.299								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					18	12					0	0	0.000743	0	0
AGGF1	55109	broad.mit.edu	37	5	76357579	76357579	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:76357579G>A	uc003ket.2	+	13	2256	c.1896G>A	c.(1894-1896)TGG>TGA	p.W632*		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	632	G-patch.				angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		AGATGGGTTGGAAGAAAGGAG	0.323													157	78					0	0	0.003610	0	0
DMGDH	29958	broad.mit.edu	37	5	78350118	78350118	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:78350118C>T	uc003kfs.2	-	4	435	c.429G>A	c.(427-429)AGG>AGA	p.R143R	DMGDH_uc011cte.1_5'UTR|DMGDH_uc011ctf.1_Intron|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	143					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		ATTCATCTACCCTTACAGGGG	0.408													18	3					0	0	0.004990	0	0
HOMER1	9456	broad.mit.edu	37	5	78692726	78692726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:78692726C>T	uc003kfy.2	-	8	1899	c.796G>A	c.(796-798)GAA>AAA	p.E266K	HOMER1_uc010jab.2_Intron|HOMER1_uc010jac.2_Missense_Mutation_p.E136K|HOMER1_uc010jad.2_Missense_Mutation_p.E92K	NM_004272	NP_004263	Q86YM7	HOME1_HUMAN	homer 1	266	Potential.				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic density|postsynaptic membrane					0		Lung NSC(167;0.00131)|all_lung(232;0.00151)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.87e-44)|Epithelial(54;7.07e-41)|all cancers(79;5.5e-36)		CTTTCTATTTCCTAGAAAAGA	0.338													9	1					0	0	0.004482	0	0
CMYA5	202333	broad.mit.edu	37	5	79025195	79025195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:79025195C>T	uc003kgc.2	+	2	679	c.607C>T	c.(607-609)CCG>TCG	p.P203S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	203						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAATACACCTCCGATTACTGG	0.353													29	16					0	0	0.001271	0	0
CMYA5	202333	broad.mit.edu	37	5	79034797	79034797	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:79034797C>T	uc003kgc.2	+	2	10281	c.10209C>T	c.(10207-10209)GTC>GTT	p.V3403V		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3403						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAATCCTGGTCCCACCTGAGC	0.443													37	8					0	0	0.001706	0	0
CMYA5	202333	broad.mit.edu	37	5	79034938	79034938	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:79034938C>T	uc003kgc.2	+	2	10422	c.10350C>T	c.(10348-10350)GTC>GTT	p.V3450V		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3450						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CTGAAGATGTCTTATCTCAAG	0.408													9	5					0	0	0.000443	0	0
LOC644936	644936	broad.mit.edu	37	5	79595799	79595799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:79595799C>T	uc010jai.2	-	1	499	c.358G>A	c.(358-360)GAA>AAA	p.E120K		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						AAGGTAGTTTCGTGGATGCCA	0.522													16	5					0	0	0.003163	0	0
ACOT12	134526	broad.mit.edu	37	5	80643675	80643676	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:80643675_80643676GG>CA	uc003khl.3	-	6	625_626	c.570_571CC>TG	c.(568-573)CTCCCA>CTTGCA	p.P191A	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	191	Acyl coenzyme A hydrolase 2.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		GCATGGGGTGGGAGGACCAGTT	0.465													83	40					0	0	0.004672	0	0
TMEM167A	153339	broad.mit.edu	37	5	82360863	82360863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:82360863G>A	uc003khx.3	-	2	207	c.77C>T	c.(76-78)TCC>TTC	p.S26F	SCARNA18_uc003khz.2_5'Flank	NM_174909	NP_777569	Q8TBQ9	KISHA_HUMAN	transmembrane protein 167A precursor	26						Golgi membrane|integral to membrane					0						GGGTGCCAAGGATCGAATATA	0.328													58	23					0	0	0.003610	0	0
VCAN	1462	broad.mit.edu	37	5	82818080	82818080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:82818080C>T	uc003kii.3	+	7	4311	c.3955C>T	c.(3955-3957)CAC>TAC	p.H1319Y	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.H1319Y|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1319	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CACAAAATTTCACCCTGACAT	0.443													20	14					0	0	0.001523	0	0
VCAN	1462	broad.mit.edu	37	5	82838036	82838036	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:82838036C>T	uc003kii.3	+	8	9570	c.9214C>T	c.(9214-9216)CTG>TTG	p.L3072L	VCAN_uc003kij.3_Silent_p.L2085L|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.L1736L	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3072	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AACAGATTTCCTGATTGGCAT	0.408													26	17					0	0	0.003330	0	0
GPR98	84059	broad.mit.edu	37	5	89918495	89918495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:89918495G>A	uc003kju.2	+	5	631	c.535G>A	c.(535-537)GGA>AGA	p.G179R	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	179	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GGGAACCTATGGAATGGTCAT	0.328													3	4					0	0	0.004672	0	0
GPR98	84059	broad.mit.edu	37	5	89986685	89986685	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:89986685C>T	uc003kju.2	+	31	6874	c.6778C>T	c.(6778-6780)CGA>TGA	p.R2260*	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2260	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GCCAATAATTCGAAATTCTGG	0.438													9	4					0	0	0.004482	0	0
GPR98	84059	broad.mit.edu	37	5	90052350	90052350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:90052350G>A	uc003kju.2	+	56	11756	c.11660G>A	c.(11659-11661)GGA>GAA	p.G3887E	GPR98_uc003kjt.2_Missense_Mutation_p.G1593E|GPR98_uc003kjv.2_Missense_Mutation_p.G1487E	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3887	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCTCTACAGGACAGCCAAGT	0.448													46	13					0	0	0.003610	0	0
GPR98	84059	broad.mit.edu	37	5	90072346	90072346	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:90072346C>T	uc003kju.2	+	61	12576	c.12480C>T	c.(12478-12480)ATC>ATT	p.I4160I	GPR98_uc003kjt.2_Silent_p.I1866I	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4160	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTAGGCACATCCTCATTGGGG	0.403													20	7					0	0	0.000958	0	0
GPR98	84059	broad.mit.edu	37	5	90086950	90086950	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:90086950G>A	uc003kju.2	+	70	14400	c.14304G>A	c.(14302-14304)TCG>TCA	p.S4768S	GPR98_uc003kjt.2_Silent_p.S2474S|GPR98_uc003kjw.2_Silent_p.S429S	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4768	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCCTGTATTCGGATCGCCAGT	0.453													10	11					0	0	0.000443	0	0
GPR98	84059	broad.mit.edu	37	5	90087065	90087065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:90087065C>T	uc003kju.2	+	70	14515	c.14419C>T	c.(14419-14421)CAT>TAT	p.H4807Y	GPR98_uc003kjt.2_Missense_Mutation_p.H2513Y|GPR98_uc003kjw.2_Missense_Mutation_p.H468Y	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4807	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATCATCGGATCATAAAGAACA	0.443													8	6					0	0	0.000443	0	0
GPR98	84059	broad.mit.edu	37	5	90136578	90136578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:90136578C>T	uc003kju.2	+	78	16891	c.16795C>T	c.(16795-16797)CTT>TTT	p.L5599F	GPR98_uc003kjt.2_Missense_Mutation_p.L3305F|GPR98_uc003kjw.2_Missense_Mutation_p.L1260F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5599	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCAGATTGTCCTTTTTGACCC	0.458													50	27					0	0	0.003610	0	0
MCTP1	79772	broad.mit.edu	37	5	94275873	94275873	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:94275873T>A	uc003kkx.2	-	5	1088	c.1088A>T	c.(1087-1089)AAA>ATA	p.K363I	MCTP1_uc003kkv.2_Missense_Mutation_p.K142I|MCTP1_uc003kkw.2_Missense_Mutation_p.K142I|MCTP1_uc003kkz.2_Missense_Mutation_p.K24I	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	363					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		ATGAGGATCTTTCAGAGTAAG	0.363													50	22					0	0	0.003610	0	0
FAM81B	153643	broad.mit.edu	37	5	94749811	94749811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:94749811G>A	uc003kla.1	+	4	500	c.454G>A	c.(454-456)GAG>AAG	p.E152K	FAM81B_uc010jbe.1_5'UTR	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	152										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		CTTTCGAAAAGAGGAATCGCT	0.488													21	7					0	0	0.002299	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100231398	100231398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:100231398C>T	uc003knk.2	-	2	533	c.205G>A	c.(205-207)GAA>AAA	p.E69K	ST8SIA4_uc003knl.2_Missense_Mutation_p.E69K	NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	69	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		TTCCAACCTTCTACATTGTGC	0.378													28	15					0	0	0.002445	0	0
C5orf13	9315	broad.mit.edu	37	5	111071187	111071187	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:111071187G>A	uc003kpl.2	-	2	500	c.21C>T	c.(19-21)CTC>CTT	p.L7L	C5orf13_uc011cvr.1_Silent_p.L51L|C5orf13_uc011cvs.1_Silent_p.L41L|C5orf13_uc003kpk.2_RNA|C5orf13_uc003kpm.2_Silent_p.L7L|C5orf13_uc011cvk.1_Silent_p.L7L|C5orf13_uc011cvl.1_Silent_p.L7L|C5orf13_uc011cvm.1_Silent_p.L7L|C5orf13_uc011cvn.1_Silent_p.L7L|C5orf13_uc011cvo.1_Silent_p.L7L|C5orf13_uc011cvp.1_Silent_p.L7L|C5orf13_uc011cvq.1_Silent_p.L7L	NM_001142483	NP_001135955	Q16612	NP311_HUMAN	neuronal protein 3.1 isoform a	7						cytoplasm				skin(1)	1		all_cancers(142;0.00597)|all_epithelial(76;0.000144)|Prostate(80;0.0115)|Colorectal(10;0.0446)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;5.45e-09)|Epithelial(69;2e-08)|all cancers(49;1.9e-06)|COAD - Colon adenocarcinoma(37;0.0514)|Colorectal(14;0.0629)		CCCAGACAAAGAGTTCTGGGT	0.388													45	17					0	0	0.003610	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111594984	111594984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:111594984C>T	uc003kpv.1	-	9	1011	c.737G>A	c.(736-738)CGG>CAG	p.R246Q		NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	246	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CTTTGTAATCCGAGGCCTAAA	0.393													28	11					0	0	0.001271	0	0
APC	324	broad.mit.edu	37	5	112178327	112178327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:112178327C>T	uc010jby.2	+	16	7416	c.7036C>T	c.(7036-7038)CCA>TCA	p.P2346S	APC_uc011cvt.1_Missense_Mutation_p.P2328S|APC_uc003kpz.3_Missense_Mutation_p.P2346S|APC_uc003kpy.3_Missense_Mutation_p.P2346S|APC_uc010jbz.2_Missense_Mutation_p.P2063S|APC_uc010jca.2_Missense_Mutation_p.P1646S	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	2346	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		ATCTCAACTTCCAAGGACATC	0.433		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			28	12					0	0	0.001061	0	0
AP3S1	1176	broad.mit.edu	37	5	115249116	115249116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:115249116C>T	uc003krl.2	+	6	627	c.511C>T	c.(511-513)CCT>TCT	p.P171S	AP3S1_uc003krk.2_Missense_Mutation_p.P149S|AP3S1_uc003krm.2_Missense_Mutation_p.P135S	NM_001284	NP_001275	Q92572	AP3S1_HUMAN	adaptor-related protein complex 3, sigma 1	171					insulin receptor signaling pathway|intracellular protein transport|vesicle-mediated transport	AP-type membrane coat adaptor complex|cytoplasmic vesicle membrane|Golgi apparatus|transport vesicle	protein binding|protein transporter activity				0		all_cancers(142;0.00377)|all_epithelial(76;0.000129)|Prostate(80;0.0132)|Ovarian(225;0.0776)|Lung NSC(810;0.245)		OV - Ovarian serous cystadenocarcinoma(64;1.08e-07)|Epithelial(69;1.11e-06)|all cancers(49;5.2e-05)		TATGAATCTTCCTGAGATCCC	0.383													14	47					0	0	0.000743	0	0
AP3S1	1176	broad.mit.edu	37	5	115249169	115249169	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:115249169C>T	uc003krl.2	+	6	680	c.564C>T	c.(562-564)AAC>AAT	p.N188N	AP3S1_uc003krk.2_Silent_p.N166N|AP3S1_uc003krm.2_Silent_p.N152N	NM_001284	NP_001275	Q92572	AP3S1_HUMAN	adaptor-related protein complex 3, sigma 1	188					insulin receptor signaling pathway|intracellular protein transport|vesicle-mediated transport	AP-type membrane coat adaptor complex|cytoplasmic vesicle membrane|Golgi apparatus|transport vesicle	protein binding|protein transporter activity				0		all_cancers(142;0.00377)|all_epithelial(76;0.000129)|Prostate(80;0.0132)|Ovarian(225;0.0776)|Lung NSC(810;0.245)		OV - Ovarian serous cystadenocarcinoma(64;1.08e-07)|Epithelial(69;1.11e-06)|all cancers(49;5.2e-05)		AAGTGCCAAACCTGCCCTCTT	0.398													19	66					0	0	0.001882	0	0
DTWD2	285605	broad.mit.edu	37	5	118274914	118274914	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:118274914G>A	uc003ksa.2	-	3	415	c.381C>T	c.(379-381)ATC>ATT	p.I127I		NM_173666	NP_775937	Q8NBA8	DTWD2_HUMAN	DTW domain containing 2	127											0		all_epithelial(76;0.0982)|Prostate(80;0.121)		OV - Ovarian serous cystadenocarcinoma(64;0.000228)|Epithelial(69;0.000941)|all cancers(49;0.00939)		AGCGACGACCGATCTTCACTT	0.358													12	4					0	0	0.003163	0	0
FTMT	94033	broad.mit.edu	37	5	121188116	121188116	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:121188116G>A	uc003kss.2	+	1	467	c.458G>A	c.(457-459)TGG>TAG	p.W153*		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	153	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CAGGACGACTGGGAAAGCGGG	0.582													20	8					0	0	0.001523	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786525	121786525	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:121786525A>C	uc003ksw.1	+	10	2189	c.1983A>C	c.(1981-1983)GAA>GAC	p.E661D	SNCAIP_uc011cwl.1_Missense_Mutation_p.E219D|SNCAIP_uc003ksx.1_Missense_Mutation_p.E708D|SNCAIP_uc003ksy.1_Missense_Mutation_p.E295D|SNCAIP_uc003ksz.1_Missense_Mutation_p.E295D|SNCAIP_uc010jcu.2_Missense_Mutation_p.E257D|SNCAIP_uc011cwm.1_Missense_Mutation_p.E295D|SNCAIP_uc003kta.1_Missense_Mutation_p.E293D|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E355D|SNCAIP_uc010jcx.1_Missense_Mutation_p.E601D|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.E177D	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	661					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AGAAGAGGGAACTGAAGTTAG	0.493													11	5					0	0	0.000978	0	0
FBN2	2201	broad.mit.edu	37	5	127713525	127713525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:127713525C>T	uc003kuu.2	-	13	2208	c.1769G>A	c.(1768-1770)CGA>CAA	p.R590Q	FBN2_uc003kuv.2_Missense_Mutation_p.R557Q	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	590	EGF-like 8; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GTTCACGCATCGACCGTTTTT	0.393													62	31					0	0	0.003610	0	0
IL5	3567	broad.mit.edu	37	5	131877530	131877530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:131877530C>T	uc003kxe.1	-	4	422	c.378G>A	c.(376-378)ATG>ATA	p.M126I		NM_000879	NP_000870	P05113	IL5_HUMAN	interleukin 5 precursor	126					immune response|inflammatory response|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of podosome assembly	extracellular space	cytokine activity|growth factor activity|interleukin-5 receptor binding				0		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Pranlukast(DB01411)	ACTCGGTGTTCATTACACCAA	0.393													27	8					0	0	0.001271	0	0
TRPC7	57113	broad.mit.edu	37	5	135692968	135692968	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:135692968C>T	uc003lbn.1	-	1	108	c.105G>A	c.(103-105)AAG>AAA	p.K35K	TRPC7_uc010jef.1_Silent_p.K27K|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.K27K|TRPC7_uc010jei.1_Silent_p.K27K|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	36	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GACTGGTGCCCTTCTCGTTGA	0.612													33	16					0	0	0.002836	0	0
EGR1	1958	broad.mit.edu	37	5	137802462	137802462	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:137802462C>T	uc003ldb.1	+	2	594	c.324C>T	c.(322-324)ATC>ATT	p.I108I	EGR1_uc011cyu.1_Silent_p.I108I	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	108					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TTCCTGACATCTCTCTGAACA	0.577													49	27					0	0	0.003610	0	0
PURA	5813	broad.mit.edu	37	5	139494291	139494291	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:139494291C>T	uc003lfa.2	+	1	584	c.525C>T	c.(523-525)AAC>AAT	p.N175N		NM_005859	NP_005850	Q00577	PURA_HUMAN	purine-rich element binding protein A	175					DNA unwinding involved in replication|DNA-dependent DNA replication initiation	DNA replication factor A complex	double-stranded telomeric DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|single-stranded DNA binding|transcription factor binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACGGTCAACCGGGGGCCTG	0.652													11	5					0	0	0.001368	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167376	140167376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140167376G>A	uc003lhb.2	+	1	1501	c.1501G>A	c.(1501-1503)GAG>AAG	p.E501K	PCDHA1_uc003lha.2_Missense_Mutation_p.E501K|PCDHA1_uc003lgz.2_Missense_Mutation_p.E501K	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	501	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGGTGGGCGAGCGCGCGCT	0.677													21	5					0	0	0.001882	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188073	140188073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140188073C>T	uc003lhi.2	+	1	1402	c.1301C>T	c.(1300-1302)TCG>TTG	p.S434L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.S434L|PCDHA4_uc011daa.1_Missense_Mutation_p.S434L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	434	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTCGCCTTCGCTGTGGGCC	0.612													42	11					0	0	0.002522	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202091	140202091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140202091C>T	uc003lhl.2	+	1	731	c.731C>T	c.(730-732)TCC>TTC	p.S244F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S244F|PCDHA5_uc003lhj.1_Missense_Mutation_p.S244F	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	244	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTGATAAATCCATTTATAAT	0.388													37	16					0	0	0.004289	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203180	140203180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140203180C>T	uc003lhl.2	+	1	1820	c.1820C>T	c.(1819-1821)TCG>TTG	p.S607L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S607L|PCDHA5_uc003lhj.1_Missense_Mutation_p.S607L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	607	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTTGGCTTTCGTATGAGCTG	0.652													21	10					0	0	0.002299	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140346622	140346622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140346622G>A	uc003lii.2	+	1	511	c.271G>A	c.(271-273)GAG>AAG	p.E91K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.E91K	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	91	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCTACCTGGAGCTGGACCT	0.672													12	5					0	0	0.001368	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140362110	140362110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140362110C>T	uc003lii.2	+	3	2915	c.2675C>T	c.(2674-2676)CCT>CTT	p.P892L	PCDHA1_uc003lha.2_Missense_Mutation_p.P571L|PCDHA1_uc003lhb.2_Missense_Mutation_p.P835L|PCDHA2_uc003lhd.2_Missense_Mutation_p.P833L|PCDHA3_uc003lhf.2_Missense_Mutation_p.P835L|PCDHA4_uc003lhi.2_Missense_Mutation_p.P832L|PCDHA4_uc003lhh.1_Missense_Mutation_p.P832L|PCDHA5_uc003lhk.1_Missense_Mutation_p.P821L|PCDHA5_uc003lhl.2_Missense_Mutation_p.P821L|PCDHA6_uc003lhn.2_Missense_Mutation_p.P571L|PCDHA6_uc003lho.2_Missense_Mutation_p.P835L|PCDHA7_uc003lhq.2_Missense_Mutation_p.P822L|PCDHA8_uc003lhs.2_Missense_Mutation_p.P835L|PCDHA9_uc003lhu.2_Missense_Mutation_p.P835L|PCDHA10_uc003lhw.2_Missense_Mutation_p.P570L|PCDHA10_uc003lhx.2_Missense_Mutation_p.P833L|PCDHA11_uc003lia.2_Missense_Mutation_p.P834L|PCDHA12_uc003lic.2_Missense_Mutation_p.P826L|PCDHA13_uc003lie.1_Missense_Mutation_p.P835L|PCDHA13_uc003lif.2_Missense_Mutation_p.P835L|PCDHAC1_uc003lih.2_Missense_Mutation_p.P848L	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	892	PXXP 2.|4 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGGAGGGCCTGATCAGCAG	0.493													20	10					0	0	0.003954	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432677	140432677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140432677C>T	uc003lik.1	+	1	1699	c.1622C>T	c.(1621-1623)TCA>TTA	p.S541L		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	541	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCTTCCTGTCACTGAGTAGC	0.468													29	11					0	0	0.002096	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559711	140559711	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140559711C>A	uc011dai.1	+	1	2282	c.2096C>A	c.(2095-2097)TCT>TAT	p.S699Y	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	699	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCTCGGTGTCTTCGCTCTTC	0.687													30	22					2.09667e-21	3.64437e-21	0.003755	1	0
PCDHB16	57717	broad.mit.edu	37	5	140564327	140564327	+	Silent	SNP	C	T	T	rs17844667		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140564327C>T	uc003liv.2	+	1	3348	c.2193C>T	c.(2191-2193)CCC>CCT	p.P731P	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	731	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGAGGGCCCCTTTCCAGGGC	0.637													43	16					0	0	0.003214	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573706	140573706	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140573706C>T	uc003lix.2	+	1	1755	c.1581C>T	c.(1579-1581)TTC>TTT	p.F527F		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	527	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGGCTTTCGAGTTCCGCG	0.692													8	24					0	0	0.003080	0	0
PCDHB12	56124	broad.mit.edu	37	5	140588741	140588741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140588741G>A	uc003liz.2	+	1	451	c.262G>A	c.(262-264)GAA>AAA	p.E88K	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	88	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTCCTGAGAGAAATGCTAGA	0.488													32	11					0	0	0.002836	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603833	140603833	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140603833C>T	uc003ljb.2	+	1	756	c.756C>T	c.(754-756)CCC>CCT	p.P252P	PCDHB14_uc011dal.1_Silent_p.P99P	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	252	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAAGTCCCCGAGGACAGAC	0.488													17	10					0	0	0.004007	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605429	140605429	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140605429G>A	uc003ljb.2	+	1	2352	c.2352G>A	c.(2350-2352)GGG>GGA	p.G784G	PCDHB14_uc011dal.1_Silent_p.G631G	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	784	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAATATGGGGGAAATCGAGA	0.373													25	15					0	0	0.002780	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711275	140711275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140711275G>A	uc003lji.1	+	1	1024	c.1024G>A	c.(1024-1026)GAT>AAT	p.D342N	PCDHGA1_uc011dan.1_Missense_Mutation_p.D342N	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	342	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATGTAAATGATAATGCCCC	0.438													19	9					0	0	0.001216	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720749	140720749	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140720749C>A	uc003ljk.1	+	1	2396	c.2211C>A	c.(2209-2211)AGC>AGA	p.S737R	PCDHGA1_uc003lji.1_Intron|PCDHGA3_uc003ljm.1_5'Flank|PCDHGA3_uc010jfx.1_5'Flank|PCDHGA2_uc011dao.1_Missense_Mutation_p.S737R|PCDHGA3_uc011dap.1_5'Flank	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	737	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCATGCAGAGCTCGCACTTTG	0.627													32	11					4.02929e-09	6.96384e-09	0.002096	1	0
PCDHGB1	56104	broad.mit.edu	37	5	140730113	140730113	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140730113A>T	uc003ljo.1	+	1	286	c.286A>T	c.(286-288)AAA>TAA	p.K96*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Nonsense_Mutation_p.K96*	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	96	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGCGGAAGGAAACTTGAGTG	0.428											OREG0016856	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	13					0	0	0.003954	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750737	140750737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140750737C>T	uc003ljw.1	+	1	776	c.776C>T	c.(775-777)TCC>TTC	p.S259F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.S259F|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	259	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCGCTGGCTCCTCCGTATTA	0.468													30	17					0	0	0.002096	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784598	140784598	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140784598C>T	uc003lkh.1	+	1	2079	c.2079C>T	c.(2077-2079)CTC>CTT	p.L693L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.L693L	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	693	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCTCTACCTCGTTGTGGCTG	0.597													38	14					0	0	0.001706	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140870568	140870568	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:140870568C>A	uc003lla.1	+	1	1761	c.1761C>A	c.(1759-1761)TCC>TCA	p.S587S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Silent_p.S587S	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	587	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCTGGCTCCTTGGTCACCA	0.612													18	3					6.94344e-10	1.20077e-09	0.000743	1	0
ARAP3	64411	broad.mit.edu	37	5	141059732	141059732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:141059732G>A	uc003llm.2	-	2	400	c.322C>T	c.(322-324)CCT>TCT	p.P108S	ARAP3_uc003lln.2_Missense_Mutation_p.P30S|ARAP3_uc003llo.1_Missense_Mutation_p.P108S	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	108	Pro-rich.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						GTGGTGGCAGGGCCACTGAGT	0.672													26	9					0	0	0.001061	0	0
GRXCR2	643226	broad.mit.edu	37	5	145252411	145252411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:145252411C>T	uc003lns.1	-	1	121	c.121G>A	c.(121-123)GAA>AAA	p.E41K		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	41											0						GACTCTAATTCCTGCCCATCC	0.488													36	28					0	0	0.002222	0	0
DPYSL3	1809	broad.mit.edu	37	5	146795414	146795414	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:146795414A>G	uc003lon.1	-	4	446	c.336T>C	c.(334-336)CCT>CCC	p.P112P	DPYSL3_uc003loo.2_Silent_p.P226P	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	112					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTGGACTCAGGCTCAGGCA	0.562													3	37					0	0	0.000248	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147051353	147051353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:147051353C>T	uc003loq.1	-	2	399	c.17G>A	c.(16-18)CGA>CAA	p.R6Q	JAKMIP2_uc011dbx.1_Intron|JAKMIP2_uc003lor.1_Missense_Mutation_p.R6Q|JAKMIP2_uc010jgo.1_Missense_Mutation_p.R6Q	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	6						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCTTATTTCGCCCTTTCTT	0.458													12	9					0	0	0.002450	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147051361	147051361	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:147051361C>T	uc003loq.1	-	2	391	c.9G>A	c.(7-9)AAG>AAA	p.K3K	JAKMIP2_uc011dbx.1_Intron|JAKMIP2_uc003lor.1_Silent_p.K3K|JAKMIP2_uc010jgo.1_Silent_p.K3K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	3						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGCCCTTTCTTGGACATTG	0.458													12	7					0	0	0.004007	0	0
CSF1R	1436	broad.mit.edu	37	5	149435821	149435821	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:149435821C>T	uc003lrl.2	-	17	2598	c.2403G>A	c.(2401-2403)AGG>AGA	p.R801R	CSF1R_uc011dcd.1_Intron|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.R801R	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	801	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	TCATGATGTCCCTAGCCAGCC	0.577													24	12					0	0	0.003330	0	0
CSF1R	1436	broad.mit.edu	37	5	149453025	149453025	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:149453025C>T	uc003lrl.2	-	6	1116	c.921G>A	c.(919-921)CAG>CAA	p.Q307Q	CSF1R_uc011dcd.1_Silent_p.Q159Q|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.Q307Q|CSF1R_uc011dce.1_Intron	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	307	Extracellular (Potential).|Ig-like C2-type 4.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	GGATGAGGTTCTGCTCAGAGC	0.517													30	17					0	0	0.001786	0	0
FAT2	2196	broad.mit.edu	37	5	150924778	150924778	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:150924778C>T	uc003lue.3	-	9	5923	c.5910G>A	c.(5908-5910)CAG>CAA	p.Q1970Q	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1970	Extracellular (Potential).|Cadherin 17.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGTAGACATCCTGATCAAACT	0.478													13	9					0	0	0.002450	0	0
NMUR2	56923	broad.mit.edu	37	5	151777638	151777638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:151777638G>A	uc003luv.2	-	2	960	c.794C>T	c.(793-795)TCA>TTA	p.S265L		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	265	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CTTGTTGACTGATTTTCTGCA	0.393													22	9					0	0	0.002299	0	0
GRIA1	2890	broad.mit.edu	37	5	153085554	153085554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:153085554G>A	uc003lva.3	+	11	2115	c.1750G>A	c.(1750-1752)GAG>AAG	p.E584K	GRIA1_uc003luy.3_Missense_Mutation_p.E584K|GRIA1_uc003luz.3_Missense_Mutation_p.E489K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.E504K|GRIA1_uc011dcx.1_Missense_Mutation_p.E515K|GRIA1_uc011dcy.1_Missense_Mutation_p.E594K|GRIA1_uc011dcz.1_Missense_Mutation_p.E594K|GRIA1_uc010jia.1_Missense_Mutation_p.E564K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	584	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CCAGTCCAATGAGTTTGGGAT	0.507													24	13					0	0	0.003954	0	0
GRIA1	2890	broad.mit.edu	37	5	153144107	153144107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:153144107C>T	uc003lva.3	+	12	2302	c.1937C>T	c.(1936-1938)CCC>CTC	p.P646L	GRIA1_uc003luy.3_Missense_Mutation_p.P646L|GRIA1_uc003luz.3_Missense_Mutation_p.P551L|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.P566L|GRIA1_uc011dcx.1_Missense_Mutation_p.P577L|GRIA1_uc011dcy.1_Missense_Mutation_p.P656L|GRIA1_uc011dcz.1_Missense_Mutation_p.P656L	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	646	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ATGGTGTCTCCCATTGAGAGT	0.527													7	13					0	0	0.004482	0	0
GRIA1	2890	broad.mit.edu	37	5	153181972	153181972	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:153181972C>T	uc003lva.3	+	15	2807	c.2442C>T	c.(2440-2442)ATC>ATT	p.I814I	GRIA1_uc003luy.3_Silent_p.I814I|GRIA1_uc003luz.3_Silent_p.I719I|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.I734I|GRIA1_uc011dcx.1_Silent_p.I745I|GRIA1_uc011dcy.1_Silent_p.I824I|GRIA1_uc011dcz.1_Silent_p.I824I	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	814	Helical; (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ACATCCTGATCGGAGGACTTG	0.428													38	26					0	0	0.001287	0	0
FAM114A2	10827	broad.mit.edu	37	5	153382520	153382520	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:153382520T>A	uc003lvb.2	-	10	1591	c.1003A>T	c.(1003-1005)ACC>TCC	p.T335S	FAM114A2_uc003lvc.2_Missense_Mutation_p.T335S|FAM114A2_uc003lvd.2_Missense_Mutation_p.T335S|FAM114A2_uc003lve.2_Missense_Mutation_p.T151S|FAM114A2_uc011dda.1_Missense_Mutation_p.T265S	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	335							purine nucleotide binding				0						TCGTGGGCGGTATTTCTTGCC	0.398													38	23					0	0	0.002522	0	0
KIF4B	285643	broad.mit.edu	37	5	154393517	154393517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:154393517C>T	uc010jih.1	+	1	258	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	33	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ATGTGCCTTTCCTTCGTGCCC	0.512													19	7					0	0	0.000958	0	0
KIF4B	285643	broad.mit.edu	37	5	154396832	154396832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:154396832C>T	uc010jih.1	+	1	3573	c.3413C>T	c.(3412-3414)TCC>TTC	p.S1138F		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	1138	Interaction with PRC1 (By similarity).|Globular (By similarity).				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACCCAGGATTCCGAAGGCTCC	0.537													14	6					0	0	0.002450	0	0
PPP1R2P3	153743	broad.mit.edu	37	5	156277962	156277962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:156277962C>T	uc003lwf.1	+	1	414	c.389C>T	c.(388-390)TCA>TTA	p.S130L		NR_002168				RecName: Full=Putative protein phosphatase inhibitor 2-like protein 3; AltName: Full=Protein phosphatase 1, regulatory subunit 2 pseudogene 3;												0						AGTGACCTCTCACCTGAAGAA	0.423													10	10					0	0	0.000443	0	0
PPP1R2P3	153743	broad.mit.edu	37	5	156277994	156277994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:156277994G>A	uc003lwf.1	+	1	446	c.421G>A	c.(421-423)GAA>AAA	p.E141K		NR_002168				RecName: Full=Putative protein phosphatase inhibitor 2-like protein 3; AltName: Full=Protein phosphatase 1, regulatory subunit 2 pseudogene 3;												0						GCGACAATTTGAAATGAGAAG	0.398													25	13					0	0	0.002780	0	0
HAVCR1	26762	broad.mit.edu	37	5	156476147	156476147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:156476147G>A	uc010jij.1	-	5	868	c.683C>T	c.(682-684)TCA>TTA	p.S228L	HAVCR1_uc011ddl.1_Missense_Mutation_p.S59L|HAVCR1_uc003lwi.2_Missense_Mutation_p.S228L	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	223	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGAAGATGGTGAAGTGGCTAC	0.438													83	30					0	0	0.003610	0	0
FAM71B	153745	broad.mit.edu	37	5	156589728	156589728	+	Silent	SNP	C	T	T	rs147642455		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:156589728C>T	uc003lwn.2	-	2	1648	c.1548G>A	c.(1546-1548)GGG>GGA	p.G516G		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	516						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATTGGTTCTTCCCCAGTTCCT	0.498													191	79					0	0	0.003610	0	0
FAM71B	153745	broad.mit.edu	37	5	156592958	156592958	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:156592958G>A	uc003lwn.2	-	1	322	c.222C>T	c.(220-222)ATC>ATT	p.I74I		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	74						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGGTGCAGACGATGCCCACTG	0.493													143	75					0	0	0.003610	0	0
GABRA6	2559	broad.mit.edu	37	5	161117250	161117250	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:161117250G>A	uc003lyu.2	+	7	1055	c.717G>A	c.(715-717)AAG>AAA	p.K239K	GABRA6_uc003lyv.2_Silent_p.K10K	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	239	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGCAAAGGAAGATGGGCTACT	0.398										TCGA Ovarian(5;0.080)			35	15					0	0	0.002836	0	0
GABRG2	2566	broad.mit.edu	37	5	161580307	161580307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:161580307G>A	uc003lyz.3	+	9	1695	c.1337G>A	c.(1336-1338)CGG>CAG	p.R446Q	GABRG2_uc010jjc.2_Missense_Mutation_p.R494Q|GABRG2_uc003lyy.3_Missense_Mutation_p.R454Q|GABRG2_uc011dej.1_Missense_Mutation_p.R351Q	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	446	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		TCCTATGCTCGGATCTTCTTC	0.458													82	24					0	0	0.003610	0	0
SLIT3	6586	broad.mit.edu	37	5	168096814	168096814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:168096814C>T	uc003mab.2	-	35	4730	c.4310G>A	c.(4309-4311)GGC>GAC	p.G1437D	SLIT3_uc010jjg.2_Missense_Mutation_p.G1444D	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1437	EGF-like 9.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCCGCTAAAGCCGGGCTGGCA	0.498													6	6					0	0	0.001984	0	0
SLIT3	6586	broad.mit.edu	37	5	168111062	168111062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:168111062C>T	uc003mab.2	-	32	4015	c.3595G>A	c.(3595-3597)GGA>AGA	p.G1199R	SLIT3_uc010jjg.2_Missense_Mutation_p.G1206R	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1199	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCATTGTCTCCTTTGTAGAGA	0.587													28	10					0	0	0.001786	0	0
SLIT3	6586	broad.mit.edu	37	5	168201309	168201309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:168201309G>A	uc003mab.2	-	13	1646	c.1226C>T	c.(1225-1227)TCC>TTC	p.S409F	SLIT3_uc010jjg.2_Missense_Mutation_p.S409F|SLIT3_uc010jji.2_Missense_Mutation_p.S409F|SLIT3_uc003mac.1_Missense_Mutation_p.S206F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	409	LRR 11.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTCATACAGGGAGAGCAAGTT	0.557													62	30					0	0	0.003610	0	0
SLIT3	6586	broad.mit.edu	37	5	168233482	168233482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:168233482G>A	uc003mab.2	-	9	1324	c.904C>T	c.(904-906)CCT>TCT	p.P302S	SLIT3_uc010jjg.2_Missense_Mutation_p.P302S|SLIT3_uc010jji.2_Missense_Mutation_p.P302S|SLIT3_uc003mac.1_Missense_Mutation_p.P99S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	302	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAGTTGGCAGGAATCTCCATC	0.577													22	8					0	0	0.003330	0	0
DOCK2	1794	broad.mit.edu	37	5	169506040	169506040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:169506040C>T	uc003maf.2	+	49	5136	c.5056C>T	c.(5056-5058)CCG>TCG	p.P1686S	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.P1178S|DOCK2_uc003mah.2_Missense_Mutation_p.P242S	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1686					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACCGATCTCCCCGGGGAGCAC	0.557													36	20					0	0	0.002222	0	0
FOXI1	2299	broad.mit.edu	37	5	169533036	169533036	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:169533036C>T	uc003mai.3	+	1	120	c.75C>T	c.(73-75)CCC>CCT	p.P25P	FOXI1_uc003maj.3_Silent_p.P25P	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	25	Pro-rich.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCCAGGAGCCCCCCGAGATGA	0.701									Pendred_syndrome				12	7					0	0	0.003163	0	0
KCNMB1	3779	broad.mit.edu	37	5	169805857	169805857	+	Missense_Mutation	SNP	C	T	T	rs148835131	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:169805857C>T	uc003maq.1	-	4	827	c.427G>A	c.(427-429)GAA>AAA	p.E143K	KCNIP1_uc003map.2_Intron	NM_004137	NP_004128	Q16558	KCMB1_HUMAN	potassium large conductance calcium-activated	143	Extracellular (Potential).				platelet activation|synaptic transmission		calcium-activated potassium channel activity|potassium channel regulator activity			ovary(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0165)|all_lung(126;0.026)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.175)		ACGCTGGTTTCGTTCCCCCGA	0.617													14	4					0	0	0.002450	0	0
RANBP17	64901	broad.mit.edu	37	5	170345783	170345783	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:170345783C>T	uc003mba.2	+	10	1037	c.1021C>T	c.(1021-1023)CAG>TAG	p.Q341*	RANBP17_uc003max.1_RNA|RANBP17_uc003may.1_RNA|RANBP17_uc003maz.1_RNA|RANBP17_uc010jjr.1_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	341					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GACAAATTATCAGCTGGGAGA	0.313			T	TRD@	ALL								26	10					0	0	0.003954	0	0
ERGIC1	57222	broad.mit.edu	37	5	172324024	172324024	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:172324024C>T	uc003mbw.3	+	3	296	c.102C>T	c.(100-102)CTC>CTT	p.L34L	ERGIC1_uc003mby.3_5'UTR	NM_001031711	NP_001026881	Q969X5	ERGI1_HUMAN	endoplasmic reticulum-golgi intermediate	34	Helical; (Potential).				ER to Golgi vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	protein binding			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GCTGCTGCCTCTTCATCCTCT	0.512													18	9					0	0	0.001216	0	0
DRD1	1812	broad.mit.edu	37	5	174869078	174869078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:174869078G>A	uc003mcz.2	-	2	1970	c.1025C>T	c.(1024-1026)TCA>TTA	p.S342L		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	342	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	TAAGAGGGTTGAAAATGCCTT	0.453													39	19					0	0	0.001287	0	0
CDHR2	54825	broad.mit.edu	37	5	175992384	175992384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:175992384C>T	uc003mem.1	+	2	97	c.31C>T	c.(31-33)CTT>TTT	p.L11F	CDHR2_uc003men.1_Missense_Mutation_p.L11F	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	11					homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CTGCTTCCTCCTTCCTGCCCT	0.622													15	11					0	0	0.000958	0	0
CDHR2	54825	broad.mit.edu	37	5	176002428	176002428	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:176002428G>A	uc003mem.1	+	9	834	c.768_splice	c.e9+1	p.K256_splice	CDHR2_uc003men.1_Splice_Site_p.K256_splice	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor						homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						TGCAGCCAAGGTGCACGGGGG	0.637													15	9					0	0	0.004007	0	0
CDHR2	54825	broad.mit.edu	37	5	176016609	176016609	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:176016609G>A	uc003mem.1	+	24	3264	c.3198G>A	c.(3196-3198)GCG>GCA	p.A1066A	CDHR2_uc003men.1_Silent_p.A1066A	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1066	Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						ACAGACAGGCGATTAATGCGT	0.617													8	6					0	0	0.003080	0	0
SNCB	6620	broad.mit.edu	37	5	176053500	176053500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:176053500C>T	uc003mep.2	-	5	624	c.181G>A	c.(181-183)GAA>AAA	p.E61K	SNCB_uc003meq.2_Missense_Mutation_p.E61K|SNCB_uc010jke.1_Silent_p.R128R	NM_001001502	NP_001001502	Q16143	SYUB_HUMAN	beta-synuclein	61	4.|4 X 11 AA tandem repeats of [EGS]-K-T-K- [EQ]-[GQ]-V-X(4).						calcium ion binding|phospholipase inhibitor activity			ovary(1)	1	all_cancers(89;0.00222)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAGGCCTGTTCCTTGGTTTTT	0.582													14	7					0	0	0.002450	0	0
HK3	3101	broad.mit.edu	37	5	176314602	176314602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:176314602C>T	uc003mfa.2	-	11	1542	c.1450G>A	c.(1450-1452)GAG>AAG	p.E484K	HK3_uc003mez.2_Missense_Mutation_p.E40K	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	484	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGGTCTCCTCCAGCAGGCGC	0.657													9	7					0	0	0.000673	0	0
FGFR4	2264	broad.mit.edu	37	5	176518729	176518729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:176518729C>T	uc003mfl.2	+	6	814	c.647C>T	c.(646-648)CCC>CTC	p.P216L	FGFR4_uc003mfm.2_Missense_Mutation_p.P216L|FGFR4_uc011dfu.1_Missense_Mutation_p.P216L|FGFR4_uc011dfw.1_Missense_Mutation_p.P216L|FGFR4_uc003mfo.2_Missense_Mutation_p.P216L	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	216	Extracellular (Potential).|Ig-like C2-type 2.				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	AGCGTGGTGCCCTCGGACCGC	0.637										TSP Lung(9;0.080)			10	3					0	0	0.000673	0	0
DOK3	79930	broad.mit.edu	37	5	176931477	176931477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:176931477G>A	uc003mhk.2	-	6	1003	c.998C>T	c.(997-999)TCC>TTC	p.S333F	DOK3_uc003mhh.3_Intron|DOK3_uc003mhi.3_Intron|DOK3_uc003mhj.3_Intron|DOK3_uc003mhl.2_Missense_Mutation_p.S277F	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	333	Pro-rich.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			GGTGTCCAGGGAGGGCAGAGA	0.731													8	0					0	0	0.000673	0	0
FAM193B	54540	broad.mit.edu	37	5	176963465	176963465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:176963465G>A	uc003mhs.3	-	5	2220	c.631C>T	c.(631-633)CCA>TCA	p.P211S	FAM193B_uc003mht.2_5'UTR|FAM193B_uc003mhu.2_Missense_Mutation_p.P3S|FAM193B_uc003mhv.2_5'UTR|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0						GAGAATGGTGGGGGCATCTTC	0.662													3	0					0	0	0.004672	0	0
SQSTM1	8878	broad.mit.edu	37	5	179251261	179251261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:179251261G>A	uc003mkw.3	+	4	706	c.611G>A	c.(610-612)GGA>GAA	p.G204E	SQSTM1_uc011dgr.1_Missense_Mutation_p.G120E|SQSTM1_uc011dgs.1_Missense_Mutation_p.G120E|SQSTM1_uc003mkv.3_Missense_Mutation_p.G204E|SQSTM1_uc003mkx.2_Missense_Mutation_p.G120E	NM_003900	NP_003891	Q13501	SQSTM_HUMAN	sequestosome 1 isoform 1	204	Interaction with GABRR3 (By similarity).|LIM protein-binding (LB).				anti-apoptosis|apoptosis|cell differentiation|endosome transport|induction of apoptosis by extracellular signals|intracellular signal transduction|macroautophagy|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein localization|regulation of I-kappaB kinase/NF-kappaB cascade|ubiquitin-dependent protein catabolic process	cytosol|late endosome|nucleoplasm	protein kinase C binding|receptor tyrosine kinase binding|SH2 domain binding|ubiquitin binding|zinc ion binding		SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(89;0.000205)|all_epithelial(37;7.15e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0395)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGTCCACCAGGAAACTGGAGC	0.622									Paget_Disease_of_Bone				20	11					0	0	0.001523	0	0
FLT4	2324	broad.mit.edu	37	5	180051016	180051016	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:180051016C>T	uc003mma.3	-	11	1546	c.1467G>A	c.(1465-1467)TGG>TGA	p.W489*	FLT4_uc003mlz.3_Nonsense_Mutation_p.W489*|FLT4_uc003mmb.1_Nonsense_Mutation_p.W22*|FLT4_uc011dgy.1_Nonsense_Mutation_p.W489*	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	489	Ig-like C2-type 5.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCACCGCCCTCCAGTCACGGC	0.642									Congenital_Hereditary_Lymphedema				17	6					0	0	0.004990	0	0
FLT4	2324	broad.mit.edu	37	5	180056296	180056296	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:180056296G>A	uc003mma.3	-	7	1027	c.948C>T	c.(946-948)ATC>ATT	p.I316I	FLT4_uc003mlz.3_Silent_p.I316I|FLT4_uc003mmb.1_5'UTR|FLT4_uc011dgy.1_Silent_p.I316I|FLT4_uc011dgz.1_Intron	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	316	Ig-like C2-type 3.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GAAATCGCTGGATGCCGTTGT	0.617									Congenital_Hereditary_Lymphedema				14	3					0	0	0.003163	0	0
BTNL8	79908	broad.mit.edu	37	5	180326357	180326357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:180326357C>T	uc003mmp.2	+	1	281	c.47C>T	c.(46-48)TCA>TTA	p.S16L	BTNL8_uc003mmq.2_Missense_Mutation_p.S16L|BTNL8_uc011dhg.1_5'UTR|BTNL8_uc010jll.2_Missense_Mutation_p.S16L|BTNL8_uc010jlm.2_Missense_Mutation_p.S16L	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	16						integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGCTGGGATCAGGTAAGACT	0.453													80	25					0	0	0.003610	0	0
BTNL8	79908	broad.mit.edu	37	5	180374560	180374560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:180374560G>A	uc003mmp.2	+	4	956	c.722G>A	c.(721-723)GGA>GAA	p.G241E	BTNL8_uc003mmq.2_Missense_Mutation_p.G241E|BTNL8_uc011dhg.1_Missense_Mutation_p.G116E|BTNL8_uc010jll.2_Missense_Mutation_p.G241E|BTNL8_uc010jlm.2_Missense_Mutation_p.G125E|BTNL8_uc011dhh.1_Missense_Mutation_p.G57E	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	241	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAAGTACTGGGAATACTCTGC	0.428													108	34					0	0	0.003610	0	0
CDYL	9425	broad.mit.edu	37	6	4943786	4943786	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:4943786C>T	uc003mwi.2	+	7	1421	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F	CDYL_uc003mwj.2_Silent_p.F376F|CDYL_uc003mwk.2_Silent_p.F141F|CDYL_uc011dhx.1_Silent_p.F244F|CDYL_uc011dhy.1_Silent_p.F244F	NM_001143971	NP_001137443	Q9Y232	CDYL1_HUMAN	chromodomain protein, Y chromosome-like isoform	430					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	histone acetyltransferase activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0901)|Lung NSC(90;0.244)		OV - Ovarian serous cystadenocarcinoma(45;0.182)		TTAGAAACTTCGTGAATACTT	0.338													33	37					0	0	0.002836	0	0
LY86	9450	broad.mit.edu	37	6	6589070	6589070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:6589070G>A	uc003mwy.1	+	1	137	c.103G>A	c.(103-105)GAC>AAC	p.D35N	LOC285780_uc003mww.3_Intron|LOC285780_uc003mwx.2_Intron	NM_004271	NP_004262	O95711	LY86_HUMAN	MD-1, RP105-associated precursor	35					apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response	extracellular space|plasma membrane					0	Ovarian(93;0.0377)					GGTCTGTAGCGACAGCGGCTT	0.572													20	34					0	0	0.003330	0	0
LY86	9450	broad.mit.edu	37	6	6626593	6626593	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:6626593C>T	uc003mwy.1	+	3	325	c.291C>T	c.(289-291)TTC>TTT	p.F97F		NM_004271	NP_004262	O95711	LY86_HUMAN	MD-1, RP105-associated precursor	97					apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response	extracellular space|plasma membrane					0	Ovarian(93;0.0377)					TTTTGAATTTCTCCTATCCCA	0.483													21	38					0	0	0.001523	0	0
RREB1	6239	broad.mit.edu	37	6	7231086	7231086	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:7231086C>T	uc003mxc.2	+	10	3144	c.2754C>T	c.(2752-2754)TCC>TCT	p.S918S	RREB1_uc003mxb.2_Silent_p.S918S|RREB1_uc010jnx.2_Silent_p.S918S	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	918					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				AAAACATCTCCTTTCTGAGCC	0.567													15	26					0	0	0.002450	0	0
DSP	1832	broad.mit.edu	37	6	7578768	7578768	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:7578768G>T	uc003mxp.1	+	22	3336	c.3057G>T	c.(3055-3057)GAG>GAT	p.E1019D	DSP_uc003mxq.1_Missense_Mutation_p.E1019D	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1019	Globular 1.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCTTAAGTGAGATGCTGAAGA	0.348													29	82					7.63505e-26	1.32846e-25	0.002445	1	0
GCM2	9247	broad.mit.edu	37	6	10877559	10877559	+	Missense_Mutation	SNP	C	T	T	rs11963186	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:10877559C>T	uc003mzn.3	-	2	229	c.157G>A	c.(157-159)GAT>AAT	p.D53N	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	53	GCM.				cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				TTCTTCTCATCGCTGCTGTAG	0.572													12	16					0	0	0.001368	0	0
ELOVL2	54898	broad.mit.edu	37	6	10995379	10995379	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:10995379G>A	uc003mzp.3	-	5	527	c.366C>T	c.(364-366)TCC>TCT	p.S122S		NM_017770	NP_060240	Q9NXB9	ELOV2_HUMAN	elongation of very long chain fatty acids-like	122					fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Breast(50;0.0418)|Ovarian(93;0.0919)	all_hematologic(90;0.117)	Epithelial(50;0.176)			CTACTGATTTGGAGAAATAGT	0.408													18	32					0	0	0.001882	0	0
RNF182	221687	broad.mit.edu	37	6	13977949	13977949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:13977949G>A	uc003nbe.2	+	3	1017	c.599G>A	c.(598-600)GGA>GAA	p.G200E	RNF182_uc003nbf.2_Missense_Mutation_p.G200E|RNF182_uc003nbg.2_Missense_Mutation_p.G200E	NM_152737	NP_689950	Q8N6D2	RN182_HUMAN	ring finger protein 182	200	Helical; (Potential).					cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			TTACCCTTAGGAATCTACTTA	0.493													54	78					0	0	0.003610	0	0
JARID2	3720	broad.mit.edu	37	6	15496531	15496531	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:15496531G>C	uc003nbj.2	+	7	1319	c.1075G>C	c.(1075-1077)GAC>CAC	p.D359H	JARID2_uc011diu.1_Missense_Mutation_p.D223H|JARID2_uc011div.1_Missense_Mutation_p.D187H|JARID2_uc011diw.1_Missense_Mutation_p.D321H	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	359					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				ACTGGTCAAGGACACCAAACC	0.512													14	25					0	0	0.001855	0	0
NUP153	9972	broad.mit.edu	37	6	17648081	17648081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:17648081G>A	uc003ncd.1	-	13	1789	c.1589C>T	c.(1588-1590)CCA>CTA	p.P530L	NUP153_uc011dje.1_Missense_Mutation_p.P561L|NUP153_uc010jpl.1_Missense_Mutation_p.P530L	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	530					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			TTTTACGATTGGAGATGAAAA	0.338													26	69					0	0	0.001786	0	0
KIF13A	63971	broad.mit.edu	37	6	17855830	17855830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:17855830G>A	uc003ncg.3	-	6	437	c.332C>T	c.(331-333)TCC>TTC	p.S111F	KIF13A_uc003ncf.2_Missense_Mutation_p.S111F|KIF13A_uc003nch.3_Missense_Mutation_p.S111F|KIF13A_uc003nci.3_Missense_Mutation_p.S111F	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	111	Kinesin-motor.				cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			GCCCATCATGGAAAAGGATTT	0.443													11	20					0	0	0.000978	0	0
NHLRC1	378884	broad.mit.edu	37	6	18121869	18121870	+	Missense_Mutation	DNP	GG	AA	AA	rs142941035	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:18121869_18121870GG>AA	uc003ncl.1	-	1	982_983	c.968_969CC>TT	c.(967-969)TCC>TTT	p.S323F		NM_198586	NP_940988	Q6VVB1	NHLC1_HUMAN	NHL repeat containing 1	323	NHL 5.				proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	endoplasmic reticulum|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0	Ovarian(93;0.016)|Breast(50;0.0245)	all_hematologic(90;0.165)	all cancers(50;0.0451)|Epithelial(50;0.0493)			AGGTCACAGCGGAGGCAGTTAT	0.49													28	48					0	0	0.004672	0	0
KDM1B	221656	broad.mit.edu	37	6	18197448	18197448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:18197448C>T	uc003nco.1	+	4	596	c.521C>T	c.(520-522)CCT>CTT	p.P174L	KDM1B_uc003ncn.1_Missense_Mutation_p.P245L	NM_153042	NP_694587	Q8NB78	KDM1B_HUMAN	amine oxidase (flavin containing) domain 1	377					multicellular organismal development|regulation of DNA methylation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-monomethyl-K4 specific)|oxidoreductase activity|zinc ion binding			skin(1)	1						TATCTTCTCCCTAAGGACTAC	0.433													14	24					0	0	0.001855	0	0
KDM1B	221656	broad.mit.edu	37	6	18207642	18207642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:18207642C>T	uc003nco.1	+	9	1139	c.1064C>T	c.(1063-1065)TCG>TTG	p.S355L	KDM1B_uc003ncn.1_Missense_Mutation_p.S326L	NM_153042	NP_694587	Q8NB78	KDM1B_HUMAN	amine oxidase (flavin containing) domain 1	558					multicellular organismal development|regulation of DNA methylation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-monomethyl-K4 specific)|oxidoreductase activity|zinc ion binding			skin(1)	1						TCTGCTCGCTCGTGGGACCAC	0.522													21	45					0	0	0.002780	0	0
NRSN1	140767	broad.mit.edu	37	6	24145991	24145991	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:24145991G>A	uc010jpq.1	+	4	642	c.405G>A	c.(403-405)CTG>CTA	p.L135L		NM_080723	NP_542454	Q8IZ57	NRSN1_HUMAN	neurensin 1	135	Helical; (Potential).				nervous system development	growth cone|integral to membrane|neuronal cell body|transport vesicle					0						GGTGCCTGCTGATGTCGGTGT	0.493													26	24					0	0	0.002445	0	0
GPLD1	2822	broad.mit.edu	37	6	24467020	24467020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:24467020G>A	uc003ned.1	-	10	820	c.709C>T	c.(709-711)CCG>TCG	p.P237S	GPLD1_uc010jpr.1_Missense_Mutation_p.P74S|GPLD1_uc010jps.1_Missense_Mutation_p.P237S	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	237						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						ACCAAAAACGGGGACTTTGTA	0.343													17	25					0	0	0.001216	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24505099	24505099	+	Nonsense_Mutation	SNP	G	A	A	rs118203982		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:24505099G>A	uc003neg.2	+	4	640	c.612G>A	c.(610-612)TGG>TGA	p.W204*	ALDH5A1_uc003nef.2_Nonsense_Mutation_p.W204*	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	204					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	AACCCCAGTGGAATTTCCCCA	0.567													21	24					0	0	0.003330	0	0
KIAA0319	9856	broad.mit.edu	37	6	24576801	24576801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:24576801C>T	uc011djo.1	-	10	1766	c.1529G>A	c.(1528-1530)GGA>GAA	p.G510E	KIAA0319_uc011djp.1_Missense_Mutation_p.G465E|KIAA0319_uc003neh.1_Missense_Mutation_p.G510E|KIAA0319_uc011djq.1_Missense_Mutation_p.G501E|KIAA0319_uc011djr.1_Missense_Mutation_p.G510E|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	510	PKD 2.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GTTAGTGGCTCCGTCCGAGTC	0.383													74	111					0	0	0.003610	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596130	24596130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:24596130C>T	uc011djo.1	-	3	1009	c.772G>A	c.(772-774)GAA>AAA	p.E258K	KIAA0319_uc011djp.1_Missense_Mutation_p.E213K|KIAA0319_uc003neh.1_Missense_Mutation_p.E258K|KIAA0319_uc011djq.1_Missense_Mutation_p.E249K|KIAA0319_uc011djr.1_Missense_Mutation_p.E258K	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	258	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						CTGGATTGTTCCTGGAGCTGA	0.547													44	64					0	0	0.003610	0	0
FAM65B	9750	broad.mit.edu	37	6	24865552	24865552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:24865552G>A	uc003neo.1	-	7	717	c.541C>T	c.(541-543)CGG>TGG	p.R181W	FAM65B_uc011djs.1_Missense_Mutation_p.R210W|FAM65B_uc011dju.1_Missense_Mutation_p.R215W|FAM65B_uc003nep.2_Missense_Mutation_p.R181W|FAM65B_uc011djt.1_Missense_Mutation_p.R181W	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	181					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						TTGAAGCTCCGATTGATCTCT	0.517													28	31					0	0	0.002096	0	0
LRRC16A	55604	broad.mit.edu	37	6	25488746	25488746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:25488746C>T	uc011djw.1	+	13	1374	c.998C>T	c.(997-999)CCA>CTA	p.P333L	LRRC16A_uc010jpx.2_Missense_Mutation_p.P333L|LRRC16A_uc010jpy.2_Missense_Mutation_p.P333L	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	333					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						AGTGCCAATCCATTGACCGCC	0.473													58	75					0	0	0.003610	0	0
SLC17A2	10246	broad.mit.edu	37	6	25921430	25921430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:25921430G>A	uc011dkb.1	-	3	534	c.451C>T	c.(451-453)CGG>TGG	p.R151W	SLC17A2_uc011dkc.1_Missense_Mutation_p.R151W|SLC17A2_uc003nfl.2_Missense_Mutation_p.R151W			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	151					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						TGGACTGTCCGAACCATGATG	0.438													22	45					0	0	0.003330	0	0
HIST1H1T	3010	broad.mit.edu	37	6	26107854	26107854	+	Silent	SNP	C	T	T	rs141027950		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:26107854C>T	uc003ngj.2	-	1	511	c.468G>A	c.(466-468)CCG>CCA	p.P156P		NM_005323	NP_005314	P22492	H1T_HUMAN	histone cluster 1, H1t	156					cell differentiation|multicellular organismal development|nucleosome assembly|spermatogenesis	nucleosome	DNA binding			ovary(2)	2						TTGTCGCTCTCGGCTTCTTGG	0.488													42	75					0	0	0.001951	0	0
HIST1H2BF	8343	broad.mit.edu	37	6	26200153	26200153	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:26200153A>G	uc003ngx.2	+	1	367	c.367A>G	c.(367-369)ACC>GCC	p.T123A	HIST1H3D_uc003ngv.2_5'Flank|HIST1H2AD_uc003ngw.2_5'Flank	NM_003522	NP_003513	P62807	H2B1C_HUMAN	histone cluster 1, H2bf	123					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding				0		all_hematologic(11;0.196)				CACCAAGTACACCAGCTCTAA	0.522													16	18					0	0	0.004007	0	0
ZNF391	346157	broad.mit.edu	37	6	27368397	27368397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:27368397C>T	uc003njf.1	+	3	766	c.248C>T	c.(247-249)TCC>TTC	p.S83F		NM_001076781	NP_001070249	Q9UJN7	ZN391_HUMAN	zinc finger protein 391	83					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(2)|skin(1)	3						GGACATGGATCCCCAATATCT	0.373													21	40					0	0	0.001882	0	0
OR2B6	26212	broad.mit.edu	37	6	27925214	27925214	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:27925214C>T	uc011dkx.1	+	1	196	c.196C>T	c.(196-198)CTA>TTA	p.L66L		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCTTACCAATCTATCACTCCT	0.408													31	46					0	0	0.002445	0	0
ZNF187	7741	broad.mit.edu	37	6	28244585	28244585	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:28244585C>T	uc011dld.1	+	5	1419	c.1149C>T	c.(1147-1149)CAC>CAT	p.H383H	ZNF187_uc011dlc.1_Silent_p.H384H|ZNF187_uc003nku.3_Silent_p.H249H|ZNF187_uc003nkw.3_Silent_p.H230H|ZNF187_uc011dle.1_Silent_p.H230H|ZNF187_uc011dlf.1_Silent_p.H175H|ZNF187_uc011dlg.1_Silent_p.H230H	NM_001111039	NP_001104509	Q16670	ZN187_HUMAN	zinc finger protein 187 isoform b	383	C2H2-type 5.				viral reproduction	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCCTCACCCACCATCAGAGAA	0.458													23	29					0	0	0.004656	0	0
OR2J2	26707	broad.mit.edu	37	6	29141898	29141898	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:29141898C>T	uc011dlm.1	+	1	588	c.486C>T	c.(484-486)TCC>TCT	p.S162S		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCATTCCTCCTTTACTTTCT	0.468													68	96					0	0	0.003610	0	0
OR14J1	442191	broad.mit.edu	37	6	29275263	29275263	+	Missense_Mutation	SNP	C	T	T	rs139773321		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:29275263C>T	uc011dln.1	+	1	797	c.797C>T	c.(796-798)TCG>TTG	p.S266L		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GATTCCTCATCGACTGTGGAC	0.458													49	68					0	0	0.003610	0	0
OR10C1	442194	broad.mit.edu	37	6	29408290	29408290	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:29408290C>T	uc011dlp.1	+	1	498	c.498C>T	c.(496-498)CCC>CCT	p.P166P	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTCTTTGCCCTTCTGCGGCC	0.592													27	47					0	0	0.001786	0	0
OR10C1	442194	broad.mit.edu	37	6	29408570	29408570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:29408570C>T	uc011dlp.1	+	1	778	c.778C>T	c.(778-780)CGC>TGC	p.R260C	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATCTATATTCGCCCTAAGGC	0.582													69	87					0	0	0.003610	0	0
HLA-H	3136	broad.mit.edu	37	6	29856299	29856299	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:29856299C>T	uc010jro.2	+	3	346	c.294C>T	c.(292-294)TTC>TTT	p.F98F	HLA-G_uc011dmb.1_Intron|HLA-H_uc003nod.2_RNA					SubName: Full=cDNA FLJ52667, highly similar to HLA class I histocompatibility antigen, alpha chain H;												0						ACGGGCGCTTCCTCCGCGGGT	0.687													9	6					0	0	0.000443	0	0
TRIM15	89870	broad.mit.edu	37	6	30140006	30140006	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:30140006G>A	uc010jrx.2	+	7	1757	c.1278G>A	c.(1276-1278)GTG>GTA	p.V426V		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	426	B30.2/SPRY.				mesodermal cell fate determination	intracellular	zinc ion binding				0						CGGGGCAGGTGACCCTCCACA	0.637													10	9					0	0	0.000443	0	0
TRIM39	56658	broad.mit.edu	37	6	30314270	30314270	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:30314270C>A	uc010jsa.1	+	9	1357	c.1350C>A	c.(1348-1350)TTC>TTA	p.F450L	RPP21_uc003nqd.1_Missense_Mutation_p.F124L|RPP21_uc003nqe.1_Missense_Mutation_p.F101L|RPP21_uc003nqf.1_Missense_Mutation_p.F101L	NM_172016	NP_742013	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						GCCAACGCTTCCTCAATGATC	0.582													13	16					5.50884e-06	9.49784e-06	0.001368	1	0
GNL1	2794	broad.mit.edu	37	6	30515194	30515194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:30515194G>A	uc003nqh.2	-	9	2241	c.1213C>T	c.(1213-1215)CCC>TCC	p.P405S	GNL1_uc011dmi.1_Missense_Mutation_p.P202S|GNL1_uc011dmj.1_Missense_Mutation_p.P403S|GNL1_uc011dmk.1_Missense_Mutation_p.P60S	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	405	G.				response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						TTCACAGAGGGGGTAAGAAAG	0.562													75	86					0	0	0.003610	0	0
DDR1	780	broad.mit.edu	37	6	30857031	30857031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:30857031C>T	uc003nrr.2	+	5	500	c.241C>T	c.(241-243)CCC>TCC	p.P81S	DDR1_uc010jse.2_Missense_Mutation_p.P81S|DDR1_uc003nrq.2_Missense_Mutation_p.P81S|DDR1_uc003nrs.2_Missense_Mutation_p.P81S|DDR1_uc003nrt.2_Missense_Mutation_p.P81S|DDR1_uc011dms.1_Missense_Mutation_p.P99S|DDR1_uc011dmt.1_Missense_Mutation_p.P107S|DDR1_uc003nru.2_Missense_Mutation_p.P81S|DDR1_uc011dmu.1_Missense_Mutation_p.P81S|DDR1_uc003nrv.2_Missense_Mutation_p.P81S|DDR1_uc003nrw.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	81	Extracellular (Potential).|F5/8 type C.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	GTCGGTGTTTCCCAAGGAGGA	0.647													48	67					0	0	0.003610	0	0
VARS2	57176	broad.mit.edu	37	6	30892177	30892178	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:30892177_30892178CC>TT	uc003nsc.1	+	25	3145_3146	c.2513_2514CC>TT	c.(2512-2514)CCC>CTT	p.P838L	VARS2_uc011dmx.1_Missense_Mutation_p.P838L|VARS2_uc011dmy.1_Missense_Mutation_p.P698L|VARS2_uc011dmz.1_Missense_Mutation_p.P868L|VARS2_uc011dna.1_Missense_Mutation_p.P836L|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Missense_Mutation_p.P276L|VARS2_uc010jsg.1_Missense_Mutation_p.P210L|VARS2_uc010jsh.1_5'UTR	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	838					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						CCCCTGGGGCCCCCTCAGGTCC	0.698													12	17					0	0	0.004672	0	0
BAT5	7920	broad.mit.edu	37	6	31657875	31657875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:31657875G>A	uc003nvy.1	-	11	967	c.937C>T	c.(937-939)CCA>TCA	p.P313S	BAT5_uc003nvx.1_Missense_Mutation_p.P94S|BAT5_uc011dny.1_Missense_Mutation_p.P280S|BAT5_uc003nvz.1_Missense_Mutation_p.P94S|BAT5_uc011dnz.1_Missense_Mutation_p.P94S|BAT5_uc010jtc.1_RNA	NM_021160	NP_066983	O95870	ABHGA_HUMAN	HLA-B associated transcript 5	313						integral to membrane	hydrolase activity|protein binding				0						GCAAAGCCTGGATGATTCCAG	0.552													86	124					0	0	0.003610	0	0
C6orf27	80737	broad.mit.edu	37	6	31744340	31744340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:31744340G>A	uc011dog.1	-	2	455	c.217C>T	c.(217-219)CGT>TGT	p.R73C	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	73						extracellular region				ovary(3)	3						TCCTCAAGACGAAGAGGGGGG	0.632													53	85					0	0	0.003610	0	0
CFB	629	broad.mit.edu	37	6	31915258	31915258	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:31915258G>A	uc003nyj.3	+	4	896	c.618G>A	c.(616-618)CAG>CAA	p.Q206Q	CFB_uc011dor.1_Silent_p.Q708Q|CFB_uc003nyi.2_Silent_p.Q206Q	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	206	Sushi 3.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GAACGTGTCAGGAAGGTGGCT	0.617													73	126					0	0	0.003610	0	0
C4A	720	broad.mit.edu	37	6	31996586	31996586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:31996586C>T	uc011dpd.1	+	26	3398	c.3347C>T	c.(3346-3348)TCG>TTG	p.S1116L	C4A_uc011dpe.1_Missense_Mutation_p.S1116L	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1116					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						GCTGACGGCTCGTTCCAGGAC	0.602													27	28					0	0	0.001271	0	0
TNXB	7148	broad.mit.edu	37	6	32012825	32012825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32012825C>T	uc003nzl.2	-	32	11081	c.10879G>A	c.(10879-10881)GAA>AAA	p.E3627K	TNXB_uc003nzg.1_Missense_Mutation_p.E58K|TNXB_uc003nzh.1_Missense_Mutation_p.E96K	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3674	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGCTTCCCTTCATGGAGGCCA	0.652													32	141					0	0	0.001485	0	0
TNXB	7148	broad.mit.edu	37	6	32020708	32020708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32020708C>T	uc003nzl.2	-	26	9050	c.8848G>A	c.(8848-8850)GAG>AAG	p.E2950K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2997	Fibronectin type-III 22.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGGAGCGGCTCCTCAGGGGGC	0.652													83	147					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32029481	32029481	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32029481G>A	uc003nzl.2	-	21	7387	c.7185C>T	c.(7183-7185)ACC>ACT	p.T2395T		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2455					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGGGGCTGGGGGTCTCTTCCT	0.627													84	111					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32039786	32039786	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32039786G>A	uc003nzl.2	-	13	5173	c.4971C>T	c.(4969-4971)GTC>GTT	p.V1657V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1739					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTCCACAGAGACTGGGCTGC	0.592													34	55					0	0	0.001706	0	0
PRRT1	80863	broad.mit.edu	37	6	32118242	32118242	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32118242G>C	uc003nzt.2	-	2	577	c.461C>G	c.(460-462)ACT>AGT	p.T154S	PRRT1_uc003nzs.2_Missense_Mutation_p.T195S|PRRT1_uc003nzu.2_Missense_Mutation_p.D46E	NM_030651	NP_085154	Q99946	PRRT1_HUMAN	NG5 protein	154					response to biotic stimulus	integral to membrane				breast(1)	1						CGTGCCCACAGTCCCCGCGTG	0.567													7	7					0	0	0.004482	0	0
NOTCH4	4855	broad.mit.edu	37	6	32190478	32190478	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32190478G>A	uc003obb.2	-	3	400	c.261C>T	c.(259-261)CCC>CCT	p.P87P	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.P87P	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	87	Extracellular (Potential).|EGF-like 2.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GGAGCCCTAGGGGAGCGGGAA	0.622													135	196					0	0	0.003610	0	0
NOTCH4	4855	broad.mit.edu	37	6	32191635	32191635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32191635C>T	uc003obb.2	-	1	210	c.71G>A	c.(70-72)AGA>AAA	p.R24K	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.R24K	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	24	Extracellular (Potential).|EGF-like 1.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TGCCTCACCTCTGGGTCTGAC	0.542													36	59					0	0	0.004878	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32411144	32411144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32411144C>T	uc003obh.2	+	3	592	c.511C>T	c.(511-513)CGC>TGC	p.R171C	HLA-DRA_uc003obi.2_Missense_Mutation_p.R146C	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	171	Ig-like C1-type.|Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						CCACCTTTTCCGCAAGTTCCA	0.562									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				18	35					0	0	0.001523	0	0
TAP2	6891	broad.mit.edu	37	6	32805562	32805562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32805562G>A	uc003occ.2	-	1	480	c.449C>T	c.(448-450)CCT>CTT	p.P150L	TAP2_uc011dqf.1_Missense_Mutation_p.P150L|TAP2_uc003ocb.1_Missense_Mutation_p.P150L|TAP2_uc003ocd.2_Missense_Mutation_p.P150L	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	150	Helical; Name=4; (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						AACGAGGAGAGGCAGGTCCGG	0.582													16	31					0	0	0.004007	0	0
BRD2	6046	broad.mit.edu	37	6	32944138	32944138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:32944138C>T	uc003ocn.3	+	6	2423	c.722C>T	c.(721-723)CCC>CTC	p.P241L	BRD2_uc003oco.2_RNA|BRD2_uc003ocq.3_Missense_Mutation_p.P241L|BRD2_uc003ocp.3_Missense_Mutation_p.P121L|BRD2_uc010juh.2_Missense_Mutation_p.P241L	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	241					spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						CTCAACATTCCCCACCCATCA	0.567													20	31					0	0	0.001882	0	0
COL11A2	1302	broad.mit.edu	37	6	33134870	33134870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:33134870C>T	uc003ocx.1	-	58	4435	c.4207G>A	c.(4207-4209)GAT>AAT	p.D1403N	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.D1317N|COL11A2_uc003ocz.1_Missense_Mutation_p.D1296N	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1403	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GCTCCAGCATCGCCCCGGAGA	0.612													13	14					0	0	0.002450	0	0
COL11A2	1302	broad.mit.edu	37	6	33157101	33157101	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:33157101G>A	uc003ocx.1	-	2	456	c.228C>T	c.(226-228)TTC>TTT	p.F76F	COL11A2_uc003ocy.1_Silent_p.F76F|COL11A2_uc003ocz.1_Silent_p.F76F|COL11A2_uc003oda.2_Silent_p.F76F	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	76	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCATACCTGGGAAAAGCTGGC	0.617													10	9					0	0	0.001368	0	0
VPS52	6293	broad.mit.edu	37	6	33236869	33236869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:33236869C>T	uc003odm.1	-	6	680	c.470G>A	c.(469-471)CGA>CAA	p.R157Q	VPS52_uc003odn.1_Missense_Mutation_p.R32Q|VPS52_uc003odo.1_Missense_Mutation_p.R82Q|VPS52_uc011dqy.1_Missense_Mutation_p.R32Q|VPS52_uc011dqz.1_Missense_Mutation_p.R32Q|RPS18_uc003odp.1_5'Flank|RPS18_uc010jum.1_5'Flank	NM_022553	NP_072047	Q8N1B4	VPS52_HUMAN	vacuolar protein sorting 52	157					protein transport	endosome membrane|Golgi apparatus				ovary(4)|skin(1)	5						ATTTCGAAGTCGAATGTTCAT	0.537													40	55					0	0	0.001485	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33412331	33412331	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:33412331C>T	uc011dri.1	+	16	3714	c.3519C>T	c.(3517-3519)ATC>ATT	p.I1173I	SYNGAP1_uc010juy.2_Silent_p.I1144I|SYNGAP1_uc010juz.2_Silent_p.I885I	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	1173					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						GTGCCCACATCGAGCGGGAAG	0.567													5	14					0	0	0.000602	0	0
BAK1	578	broad.mit.edu	37	6	33541631	33541631	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:33541631C>T	uc003oes.2	-	6	885	c.585G>A	c.(583-585)CTG>CTA	p.L195L	BAK1_uc003oer.2_Silent_p.L125L|BAK1_uc003oet.2_RNA|BAK1_uc010jvb.2_Silent_p.L195L|BAK1_uc003oeu.2_Silent_p.L136L	NM_001188	NP_001179	Q16611	BAK_HUMAN	BCL2-antagonist/killer 1	195	Helical; (Potential).				activation of pro-apoptotic gene products|cellular response to mechanical stimulus|cellular response to UV|establishment or maintenance of transmembrane electrochemical gradient|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|regulation of mitochondrial membrane permeability|regulation of mitochondrial membrane potential|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|release of cytochrome c from mitochondria	integral to mitochondrial outer membrane|pore complex	metal ion binding|protein heterodimerization activity			ovary(1)	1						GAACCACACCCAGAACCACCA	0.552													12	16					0	0	0.001368	0	0
ITPR3	3710	broad.mit.edu	37	6	33652691	33652691	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:33652691C>T	uc011drk.1	+	39	5497	c.5278C>T	c.(5278-5280)CTG>TTG	p.L1760L	ITPR3_uc003oey.2_5'Flank	NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	1760	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GGCCATCCACCTGCTGGATGG	0.617													20	20					0	0	0.002299	0	0
GRM4	2914	broad.mit.edu	37	6	34059808	34059808	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:34059808G>A	uc003oir.3	-	2	758	c.588C>T	c.(586-588)TCC>TCT	p.S196S	GRM4_uc011dsn.1_Silent_p.S196S|GRM4_uc010jvh.2_Silent_p.S196S|GRM4_uc010jvi.2_Intron|GRM4_uc010jvk.1_Silent_p.S115S|GRM4_uc011dsl.1_Silent_p.S56S|GRM4_uc003oiq.2_Silent_p.S63S|GRM4_uc011dsm.1_Silent_p.S27S	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	196	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GCACCACGCGGGAGAAGAAGT	0.642													9	20					0	0	0.004482	0	0
TULP1	7287	broad.mit.edu	37	6	35467883	35467883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:35467883C>T	uc003okv.3	-	14	1382	c.1370G>A	c.(1369-1371)AGC>AAC	p.S457N	TULP1_uc003okw.3_Missense_Mutation_p.S404N	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	457					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						TTCTATGAGGCTCTCCAGCGT	0.587													22	45					0	0	0.002780	0	0
C6orf81	221481	broad.mit.edu	37	6	35716457	35716457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:35716457C>T	uc003ola.2	+	6	941	c.914C>T	c.(913-915)TCC>TTC	p.S305F	C6orf81_uc003olb.1_Missense_Mutation_p.S268F	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	278	ARM 3.						binding			ovary(1)	1						AACGAACAGTCCCTGCATGAA	0.567													18	31					0	0	0.000958	0	0
SLC26A8	116369	broad.mit.edu	37	6	35923117	35923117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:35923117C>T	uc003olm.2	-	17	2155	c.2044G>A	c.(2044-2046)GAA>AAA	p.E682K	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.E264K|SLC26A8_uc003oln.2_Missense_Mutation_p.E682K|SLC26A8_uc003oll.2_Missense_Mutation_p.E577K	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	682	Interaction with RACGAP1.|STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						AGCCAAACTTCCTCCACCTCC	0.498													38	48					0	0	0.001485	0	0
SLC26A8	116369	broad.mit.edu	37	6	35928780	35928780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:35928780G>A	uc003olm.2	-	13	1669	c.1558C>T	c.(1558-1560)CGT>TGT	p.R520C	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.R102C|SLC26A8_uc003oln.2_Missense_Mutation_p.R520C|SLC26A8_uc003oll.2_Missense_Mutation_p.R415C	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	520	Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CTGTGTGAACGAACAGTGGTG	0.413													16	26					0	0	0.004990	0	0
C6orf222	389384	broad.mit.edu	37	6	36288992	36288992	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:36288992C>T	uc003oly.2	-	10	1786	c.1608G>A	c.(1606-1608)GAG>GAA	p.E536E		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	536										skin(2)|ovary(1)|breast(1)	4						GGATGATGATCTCCTCTAAGG	0.527													4	0					0	0	0.001168	0	0
C6orf222	389384	broad.mit.edu	37	6	36298334	36298334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:36298334C>T	uc003oly.2	-	2	312	c.134G>A	c.(133-135)AGG>AAG	p.R45K		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	45										skin(2)|ovary(1)|breast(1)	4						AAGCGCCTTCCTGGAGGGGGC	0.657													30	37					0	0	0.001512	0	0
ETV7	51513	broad.mit.edu	37	6	36334427	36334427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:36334427G>A	uc003omb.2	-	8	1170	c.1021C>T	c.(1021-1023)CCG>TCG	p.P341S	ETV7_uc003olz.1_Intron|ETV7_uc003oma.1_Intron|ETV7_uc010jwg.2_RNA|ETV7_uc003omc.2_Missense_Mutation_p.P286S|ETV7_uc010jwj.2_Missense_Mutation_p.P282S|ETV7_uc010jwh.2_Missense_Mutation_p.P260S|ETV7_uc010jwi.2_Missense_Mutation_p.P264S|ETV7_uc011dtl.1_Missense_Mutation_p.P190S	NM_016135	NP_057219	Q9Y603	ETV7_HUMAN	ets variant 7	341					organ morphogenesis|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						GCCCCTCACGGAGAGATTTCT	0.617													26	36					0	0	0.001512	0	0
FGD2	221472	broad.mit.edu	37	6	36976648	36976648	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:36976648A>G	uc010jwp.1	+	2	278	c.107A>G	c.(106-108)GAC>GGC	p.D36G	FGD2_uc003onf.2_Missense_Mutation_p.D36G|FGD2_uc011dtu.1_Missense_Mutation_p.D36G|FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_5'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	36					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						AGGCTAGAGGACGTGCATCAC	0.632													15	24					0	0	0.004007	0	0
TMEM217	221468	broad.mit.edu	37	6	37186744	37186744	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:37186744G>A	uc003onl.2	-	2	144	c.63C>T	c.(61-63)TTC>TTT	p.F21F	TMEM217_uc010jwr.2_Silent_p.F21F|TMEM217_uc010jws.2_Intron|TMEM217_uc003onm.3_Silent_p.F21F	NM_145316	NP_660359	Q8N7C4	TM217_HUMAN	transmembrane protein 217 isoform 1	21	Helical; (Potential).					integral to membrane					0						CCATGATGGTGAAGACCCCTG	0.498													33	72					0	0	0.002445	0	0
FTSJD2	23070	broad.mit.edu	37	6	37429775	37429775	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:37429775C>T	uc003ons.2	+	12	1475	c.1222C>T	c.(1222-1224)CTG>TTG	p.L408L	FTSJD2_uc010jwu.2_Silent_p.L352L	NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	408					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AACCTTTGACCTGTTCACACC	0.473													78	94					0	0	0.003610	0	0
FTSJD2	23070	broad.mit.edu	37	6	37442305	37442305	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:37442305C>T	uc003ons.2	+	18	2080	c.1827C>T	c.(1825-1827)TCC>TCT	p.S609S		NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	609					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGTAGAAATCCCAGATCTACA	0.507													15	23					0	0	0.000958	0	0
DNAH8	1769	broad.mit.edu	37	6	38754603	38754604	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:38754603_38754604CC>TT	uc003ooe.1	+	16	2407_2408	c.1807_1808CC>TT	c.(1807-1809)CCC>TTC	p.P603F		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAATTTCGATCCCAAAATTTTG	0.351													20	23					0	0	0.004672	0	0
DNAH8	1769	broad.mit.edu	37	6	38757653	38757653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:38757653G>A	uc003ooe.1	+	17	2607	c.2007G>A	c.(2005-2007)ATG>ATA	p.M669I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCCCAAAAATGAAAAAGGTTG	0.338													28	37					0	0	0.001271	0	0
DNAH8	1769	broad.mit.edu	37	6	38840389	38840389	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:38840389G>A	uc003ooe.1	+	48	7017	c.6417G>A	c.(6415-6417)ACG>ACA	p.T2139T		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCGTTATCACGATTCTAATGA	0.443													21	29					0	0	0.001216	0	0
DNAH8	1769	broad.mit.edu	37	6	38890883	38890883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:38890883C>T	uc003ooe.1	+	70	10661	c.10061C>T	c.(10060-10062)TCC>TTC	p.S3354F	uc003oof.1_RNA	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CAGGCCGCCTCCACTCTCATC	0.448													13	25					0	0	0.001368	0	0
DNAH8	1769	broad.mit.edu	37	6	38997991	38997991	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:38997991C>T	uc003ooe.1	+	91	13896	c.13296C>T	c.(13294-13296)CTC>CTT	p.L4432L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TACCCGTGCTCCACATCTTTG	0.507											OREG0017409	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	39					0	0	0.003271	0	0
LRFN2	57497	broad.mit.edu	37	6	40360132	40360132	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:40360132C>T	uc003oph.1	-	3	2385	c.1920G>A	c.(1918-1920)TGG>TGA	p.W640*		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	640	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GTGGGATCCTCCAGGGGGCCC	0.706													5	3					0	0	0.000602	0	0
LRFN2	57497	broad.mit.edu	37	6	40400075	40400075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:40400075C>T	uc003oph.1	-	2	1243	c.778G>A	c.(778-780)GAT>AAT	p.D260N		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	260	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					TCCAGGTCATCGTCCCGCTCG	0.597													17	18					0	0	0.004990	0	0
FOXP4	116113	broad.mit.edu	37	6	41558079	41558079	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:41558079C>T	uc003oql.2	+	12	1886	c.1428C>T	c.(1426-1428)ATC>ATT	p.I476I	FOXP4_uc003oqm.2_Silent_p.I474I|FOXP4_uc003oqn.2_Silent_p.I463I	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	476	Fork-head.				embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CCTCCCTCATCCGCCAGGTGA	0.667													28	41					0	0	0.002836	0	0
GUCA1B	2979	broad.mit.edu	37	6	42156425	42156425	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:42156425G>A	uc003orz.2	-	2	388	c.252C>T	c.(250-252)CTC>CTT	p.L84L		NM_002098	NP_002089	Q9UMX6	GUC1B_HUMAN	guanylate cyclase activator 1B (retina)	84	EF-hand 2.				body fluid secretion|cell-cell signaling|receptor guanylyl cyclase signaling pathway|visual perception	plasma membrane	calcium ion binding|calcium sensitive guanylate cyclase activator activity			skin(2)	2	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00154)|STAD - Stomach adenocarcinoma(11;0.00177)			CCCTCAGCACGAGATTCAGAG	0.552													9	22					0	0	0.004482	0	0
PRPH2	5961	broad.mit.edu	37	6	42689943	42689943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:42689943C>T	uc003osk.2	-	1	416	c.130G>A	c.(130-132)GAA>AAA	p.E44K		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	44	Lumenal (Potential).			E -> G (in Ref. 4; AAH74720).	cell adhesion|visual perception	integral to membrane				ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			TTTCGGAGTTCAATCTTCAGG	0.502													33	37					0	0	0.003271	0	0
PEX6	5190	broad.mit.edu	37	6	42935153	42935153	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:42935153G>T	uc003otf.2	-	8	1930	c.1837C>A	c.(1837-1839)CCC>ACC	p.P613T	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	613					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			TGGCCCAGGGGAAGGTGGGCA	0.617													8	17					0.000274275	0.000471926	0.004482	1	0
PTK7	5754	broad.mit.edu	37	6	43098000	43098000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:43098000C>T	uc003oub.1	+	4	701	c.503C>T	c.(502-504)CCC>CTC	p.P168L	PTK7_uc003ouc.1_Missense_Mutation_p.P168L|PTK7_uc003oud.1_Missense_Mutation_p.P168L|PTK7_uc003oue.1_Missense_Mutation_p.P168L|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_Intron|PTK7_uc011dve.1_Missense_Mutation_p.P176L|PTK7_uc010jyj.1_5'Flank|PTK7_uc003oua.2_Missense_Mutation_p.P168L	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	168	Ig-like C2-type 2.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GATGGGACCCCCCTTTCTGAT	0.597											OREG0017449	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	53					0	0	0.001786	0	0
TTBK1	84630	broad.mit.edu	37	6	43252050	43252050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:43252050G>A	uc003ouq.1	+	14	3851	c.3572G>A	c.(3571-3573)AGG>AAG	p.R1191K		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	1191						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			ATCACCAGCAGGTGAGAAACC	0.662													6	12					0	0	0.001168	0	0
ZNF318	24149	broad.mit.edu	37	6	43308573	43308573	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:43308573A>T	uc003oux.2	-	9	3528	c.3450T>A	c.(3448-3450)TCT>TCA	p.S1150S	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1150	Matrin-type 2.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			GTTGCTCCCCAGAAATTGGAT	0.418													29	33					0	0	0.002445	0	0
YIPF3	25844	broad.mit.edu	37	6	43484482	43484482	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:43484482A>G	uc003ovl.1	-	1	221	c.64T>C	c.(64-66)TTC>CTC	p.F22L	YIPF3_uc011dvk.1_5'UTR|YIPF3_uc010jyr.1_Missense_Mutation_p.F22L|YIPF3_uc010jys.1_5'UTR|YIPF3_uc003ovm.1_5'UTR|YIPF3_uc010jyt.1_Missense_Mutation_p.F22L|POLR1C_uc003ovn.2_5'Flank|POLR1C_uc003ovo.1_5'Flank	NM_015388	NP_056203	Q9GZM5	YIPF3_HUMAN	natural killer cell-specific antigen KLIP1	22					cell differentiation	integral to membrane|plasma membrane|transport vesicle					0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00736)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			TTTTCTTCGAACCCTCCCCAT	0.547													5	6					0	0	0.000602	0	0
CAPN11	11131	broad.mit.edu	37	6	44144011	44144011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:44144011G>A	uc003owt.1	+	9	975	c.937G>A	c.(937-939)GAA>AAA	p.E313K	CAPN11_uc011dvn.1_5'Flank	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	313	Calpain catalytic.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AGGCAAAATGGAAACACTGAT	0.587													23	26					0	0	0.003330	0	0
SLC29A1	2030	broad.mit.edu	37	6	44197648	44197648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:44197648C>T	uc003owu.1	+	5	648	c.319C>T	c.(319-321)CCC>TCC	p.P107S	SLC29A1_uc011dvp.1_Missense_Mutation_p.P126S|SLC29A1_uc003owv.1_Missense_Mutation_p.P107S|SLC29A1_uc003oww.1_Missense_Mutation_p.P186S|SLC29A1_uc011dvq.1_Missense_Mutation_p.P149S|SLC29A1_uc003owx.1_Missense_Mutation_p.P107S|SLC29A1_uc003owy.1_Missense_Mutation_p.P107S|SLC29A1_uc003owz.1_Missense_Mutation_p.P107S	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	107	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	CGGCAGGATCCCCCAGTCCGT	0.637													17	16					0	0	0.004007	0	0
TCTE1	202500	broad.mit.edu	37	6	44249952	44249952	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:44249952G>A	uc003oxi.2	-	4	1347	c.1191C>T	c.(1189-1191)CTC>CTT	p.L397L	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	397	LRR 4.									ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CATTGCCACCGAGGTGCAGCG	0.582													20	28					0	0	0.002780	0	0
TCTE1	202500	broad.mit.edu	37	6	44250169	44250169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:44250169C>T	uc003oxi.2	-	4	1130	c.974G>A	c.(973-975)CGA>CAA	p.R325Q	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	325										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GGCAGCACCTCGTGCACCACG	0.597													20	42					0	0	0.001216	0	0
ENPP4	22875	broad.mit.edu	37	6	46107842	46107842	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:46107842G>A	uc003oxy.2	+	2	781	c.522G>A	c.(520-522)TCG>TCA	p.S174S		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	174	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						TAAACAATTCGAACCCACCAG	0.388													31	43					0	0	0.001512	0	0
ENPP5	59084	broad.mit.edu	37	6	46129479	46129479	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:46129479C>A	uc003oxz.1	-	4	1226	c.1018G>T	c.(1018-1020)GGT>TGT	p.G340C	ENPP5_uc003oya.1_Missense_Mutation_p.G340C|ENPP5_uc011dvz.1_Missense_Mutation_p.G246C|ENPP5_uc010jzc.1_Missense_Mutation_p.R341L	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	340						extracellular region|integral to membrane	hydrolase activity				0						TTATCGTAACCGTGGTTGCCT	0.358													8	211					0.000274275	0.000471926	0.004482	1	0
RCAN2	10231	broad.mit.edu	37	6	46190958	46190958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:46190958C>T	uc003oyb.1	-	4	829	c.514G>A	c.(514-516)GAA>AAA	p.E172K	RCAN2_uc003oyc.1_Missense_Mutation_p.E218K|RCAN2_uc003oyd.1_Missense_Mutation_p.E218K	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	172					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						GGGTCCTCTTCTTCCTCTATG	0.537													61	97					0	0	0.003610	0	0
MEP1A	4224	broad.mit.edu	37	6	46806849	46806849	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:46806849C>T	uc010jzh.1	+	14	2259	c.2217C>T	c.(2215-2217)ATC>ATT	p.I739I	MEP1A_uc011dwg.1_Silent_p.I461I|MEP1A_uc011dwh.1_Silent_p.I767I|MEP1A_uc011dwi.1_Silent_p.I639I	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	739	Helical; (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TCATCGCCATCCTTTCCCAAA	0.597													30	26					0	0	0.002096	0	0
GPR116	221395	broad.mit.edu	37	6	46828586	46828586	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:46828586G>A	uc003oyo.3	-	16	2534	c.2245C>T	c.(2245-2247)CTG>TTG	p.L749L	GPR116_uc011dwj.1_Silent_p.L304L|GPR116_uc011dwk.1_Silent_p.L178L|GPR116_uc003oyp.3_Silent_p.L607L|GPR116_uc003oyq.3_Silent_p.L749L|GPR116_uc010jzi.1_Silent_p.L421L	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	749	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AGATCCTTCAGGTATGTAGGG	0.413													22	36					0	0	0.003330	0	0
GPR116	221395	broad.mit.edu	37	6	46830831	46830831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:46830831C>T	uc003oyo.3	-	15	2282	c.1993G>A	c.(1993-1995)GAA>AAA	p.E665K	GPR116_uc011dwj.1_Missense_Mutation_p.E220K|GPR116_uc011dwk.1_Missense_Mutation_p.E94K|GPR116_uc003oyp.3_Missense_Mutation_p.E523K|GPR116_uc003oyq.3_Missense_Mutation_p.E665K|GPR116_uc010jzi.1_Missense_Mutation_p.E337K	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	665	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GTGATGTTTTCCCCTGTGTTG	0.453													10	19					0	0	0.000673	0	0
GPR116	221395	broad.mit.edu	37	6	46846123	46846123	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:46846123C>T	uc003oyo.3	-	10	1345	c.1056G>A	c.(1054-1056)CTG>CTA	p.L352L	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Silent_p.L352L|GPR116_uc010jzi.1_Silent_p.L24L|GPR116_uc003oyr.2_Silent_p.L352L	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	352	Ig-like 1.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TGTCTAATATCAGTTTGCAAA	0.328													11	17					0	0	0.000978	0	0
GPR110	266977	broad.mit.edu	37	6	46977795	46977796	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:46977795_46977796GG>AA	uc003oyt.2	-	11	1574_1575	c.1375_1376CC>TT	c.(1375-1377)CCC>TTC	p.P459F	GPR110_uc011dwl.1_Missense_Mutation_p.P147F	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	459	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						GCCTCTGATGGGAATAGATGTA	0.441													23	44					0	0	0.004672	0	0
OPN5	221391	broad.mit.edu	37	6	47749833	47749833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:47749833G>A	uc003ozc.2	+	1	36	c.31G>A	c.(31-33)GAC>AAC	p.D11N		NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	11	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						CCTGCCTCAGGACGAGCGCCT	0.493													24	33					0	0	0.004656	0	0
RHAG	6005	broad.mit.edu	37	6	49582516	49582516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:49582516C>T	uc003ozk.3	-	5	753	c.691G>A	c.(691-693)GAA>AAA	p.E231K	RHAG_uc010jzl.2_Missense_Mutation_p.E231K|RHAG_uc010jzm.2_Missense_Mutation_p.E231K	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	231	Extracellular (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					TCTCCAGGTTCAGCAATGGCC	0.502													25	38					0	0	0.001786	0	0
PGK2	5232	broad.mit.edu	37	6	49754773	49754773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:49754773G>A	uc003ozu.2	-	1	235	c.128C>T	c.(127-129)TCC>TTC	p.S43F		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	43					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					GCTTGGGATGGAAGCCTTGAT	0.463													29	65					0	0	0.001061	0	0
PKHD1	5314	broad.mit.edu	37	6	51890163	51890163	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:51890163T>A	uc003pah.1	-	32	4721	c.4445A>T	c.(4444-4446)GAA>GTA	p.E1482V	PKHD1_uc003pai.2_Missense_Mutation_p.E1482V	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1482	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					ACTTGCCTCTTCCCTTATGAA	0.542													18	28					0	0	0.004990	0	0
IL17A	3605	broad.mit.edu	37	6	52054017	52054017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:52054017C>T	uc003pak.1	+	3	440	c.395C>T	c.(394-396)TCC>TTC	p.S132F		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	132					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					TGCCCCAACTCCTTCCGGCTG	0.597													7	17					0	0	0.001984	0	0
IL17F	112744	broad.mit.edu	37	6	52103713	52103713	+	Silent	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:52103713G>T	uc003pam.1	-	2	140	c.69C>A	c.(67-69)GCC>GCA	p.A23A	IL17F_uc003pal.1_5'UTR	NM_052872	NP_443104	Q96PD4	IL17F_HUMAN	interleukin 17F precursor	23					cartilage development|inflammatory response|lymphotoxin A biosynthetic process|negative regulation of angiogenesis|proteoglycan metabolic process|regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|regulation of interleukin-2 biosynthetic process|regulation of interleukin-6 biosynthetic process|regulation of interleukin-8 biosynthetic process|regulation of transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|cytokine binding|protein homodimerization activity			ovary(1)	1	Lung NSC(77;0.116)					CACTCAGAAAGGCAAGCCCCA	0.502													36	39					3.43241e-23	5.96978e-23	0.002222	1	0
GSTA1	2938	broad.mit.edu	37	6	52664052	52664052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:52664052G>A	uc003paz.2	-	2	126	c.14C>T	c.(13-15)CCC>CTC	p.P5L		NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	5	GST N-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	GTGGAGCTTGGGCTTCTCTGC	0.423													29	51					0	0	0.001271	0	0
GCM1	8521	broad.mit.edu	37	6	52993585	52993585	+	Silent	SNP	G	A	A	rs112673732		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:52993585G>A	uc003pbp.2	-	6	939	c.730C>T	c.(730-732)CTG>TTG	p.L244L		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	244						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					ATTCCTCCCAGACCATAACTC	0.458													24	36					0	0	0.005443	0	0
LRRC1	55227	broad.mit.edu	37	6	53764587	53764587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:53764587G>A	uc003pcd.1	+	8	962	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	229	LRR 10.					cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		AGATGTCTCTGAAAACAGGTT	0.403													29	31					0	0	0.001786	0	0
TINAG	27283	broad.mit.edu	37	6	54208130	54208130	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:54208130G>A	uc003pcj.2	+	5	877	c.731G>A	c.(730-732)TGG>TAG	p.W244*	TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	244					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GCTGCATCCTGGGCATTTTCC	0.368													25	32					0	0	0.001061	0	0
FAM83B	222584	broad.mit.edu	37	6	54735196	54735196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:54735196G>A	uc003pck.2	+	2	268	c.152G>A	c.(151-153)CGA>CAA	p.R51Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	51										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GTCCAGGAACGAGTTTCAGAC	0.383													20	46					0	0	0.001216	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039520	55039520	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:55039520G>A	uc003pcl.2	+	1	450	c.135G>A	c.(133-135)AGG>AGA	p.R45R	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	45	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ACCTGTGGAGGGAATACCTGC	0.537													24	35					0	0	0.002299	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55381321	55381321	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:55381321C>T	uc003pcn.2	-	5	627	c.468G>A	c.(466-468)CAG>CAA	p.Q156Q	HMGCLL1_uc003pco.2_Silent_p.Q126Q|HMGCLL1_uc010jzx.2_Silent_p.Q27Q|HMGCLL1_uc011dxc.1_Intron|HMGCLL1_uc011dxd.1_Intron|HMGCLL1_uc011dxe.1_Intron|HMGCLL1_uc003pcp.2_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	156							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			GGTGAAAACCCTGAAGATTAG	0.333													31	56					0	0	0.004289	0	0
COL21A1	81578	broad.mit.edu	37	6	56033060	56033060	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:56033060G>A	uc003pcs.2	-	6	1294	c.1062C>T	c.(1060-1062)CTC>CTT	p.L354L	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Silent_p.L354L|COL21A1_uc003pcu.1_Silent_p.L354L	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	354	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTGTTACTAAGAGACGAATTT	0.358													9	8					0	0	0.000673	0	0
COL21A1	81578	broad.mit.edu	37	6	56035923	56035923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:56035923G>A	uc003pcs.2	-	4	876	c.644C>T	c.(643-645)TCT>TTT	p.S215F	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.S215F|COL21A1_uc003pcu.1_Missense_Mutation_p.S215F	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	215					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TGGACAGACAGATTCTATAAA	0.313													45	61					0	0	0.003610	0	0
ZNF451	26036	broad.mit.edu	37	6	56999599	56999599	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:56999599C>T	uc003pdm.1	+	7	857	c.633C>T	c.(631-633)TCC>TCT	p.S211S	ZNF451_uc003pdl.2_Silent_p.S211S|ZNF451_uc003pdn.1_Silent_p.S211S|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Silent_p.S211S	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	211					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			TCTTCAGCTCCTTTGCTTGTG	0.328													28	31					0	0	0.004656	0	0
LGSN	51557	broad.mit.edu	37	6	63990145	63990145	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:63990145G>A	uc003peh.2	-	4	1345	c.1311C>T	c.(1309-1311)GTC>GTT	p.V437V	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	437					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	GACCAGCCAAGACCTCATTAC	0.463													33	45					0	0	0.002096	0	0
PHF3	23469	broad.mit.edu	37	6	64394364	64394364	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:64394364T>C	uc003pep.1	+	3	767	c.741T>C	c.(739-741)GAT>GAC	p.D247D	PHF3_uc010kaf.1_Silent_p.D247D|PHF3_uc003pem.2_Silent_p.D200D|PHF3_uc010kag.1_Silent_p.D159D|PHF3_uc010kah.1_Silent_p.D61D|PHF3_uc003pen.2_Silent_p.D159D|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Silent_p.D247D	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	247					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			GAGAAATAGATGTGCCATCTC	0.358													39	70					0	0	0.001287	0	0
PHF3	23469	broad.mit.edu	37	6	64395690	64395690	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:64395690C>T	uc003pep.1	+	3	2093	c.2067C>T	c.(2065-2067)TTC>TTT	p.F689F	PHF3_uc010kaf.1_Silent_p.F689F|PHF3_uc003pem.2_Silent_p.F642F|PHF3_uc010kag.1_Silent_p.F601F|PHF3_uc010kah.1_Silent_p.F503F|PHF3_uc003pen.2_Silent_p.F601F|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Silent_p.F689F	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	689					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			CACCATTGTTCATTCCAGATA	0.408													24	22					0	0	0.002780	0	0
EYS	346007	broad.mit.edu	37	6	66115113	66115113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:66115113G>A	uc011dxu.1	-	6	1548	c.1010C>T	c.(1009-1011)TCA>TTA	p.S337L	EYS_uc003peq.2_Missense_Mutation_p.S337L|EYS_uc003per.1_Missense_Mutation_p.S337L	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	337	EGF-like 4.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						TGGTACTAATGAAAACTCACT	0.338													51	57					0	0	0.003610	0	0
BAI3	577	broad.mit.edu	37	6	69703786	69703786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:69703786G>A	uc003pev.3	+	11	2309	c.1861G>A	c.(1861-1863)GAG>AAG	p.E621K	BAI3_uc010kak.2_Missense_Mutation_p.E621K	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	621	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity	p.E621D(1)		lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GATGTCTGTGGAGATCCTGAG	0.463													36	67					0	0	0.003755	0	0
BAI3	577	broad.mit.edu	37	6	69728382	69728382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:69728382G>A	uc003pev.3	+	13	2546	c.2098G>A	c.(2098-2100)GGA>AGA	p.G700R	BAI3_uc010kak.2_Missense_Mutation_p.G700R	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	700	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CTTAATGACTGGAAATGTAGG	0.318													31	34					0	0	0.003271	0	0
COL19A1	1310	broad.mit.edu	37	6	70897790	70897790	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:70897790G>A	uc003pfc.1	+	47	2985	c.2868G>A	c.(2866-2868)GGG>GGA	p.G956G		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	956	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GTGATCAGGGGATTCCAGGAG	0.408													18	21					0	0	0.001882	0	0
COL9A1	1297	broad.mit.edu	37	6	70964860	70964860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:70964860C>T	uc003pfg.3	-	23	1763	c.1604G>A	c.(1603-1605)GGA>GAA	p.G535E	COL9A1_uc003pfe.3_Missense_Mutation_p.G108E|COL9A1_uc003pff.3_Missense_Mutation_p.G292E	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	535	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TACCGTGTCTCCTTTGGGCCC	0.423													65	80					0	0	0.003610	0	0
COL9A1	1297	broad.mit.edu	37	6	70979353	70979353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:70979353G>A	uc003pfg.3	-	16	1372	c.1213C>T	c.(1213-1215)CAT>TAT	p.H405Y	COL9A1_uc003pfe.3_5'UTR|COL9A1_uc003pff.3_Missense_Mutation_p.H162Y	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	405	Triple-helical region (COL3).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TCTCCATCATGAAAGCCAATT	0.299													26	49					0	0	0.002445	0	0
RIMS1	22999	broad.mit.edu	37	6	72967888	72967888	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:72967888A>T	uc003pga.2	+	17	2908	c.2831A>T	c.(2830-2832)CAA>CTA	p.Q944L	RIMS1_uc011dyb.1_Missense_Mutation_p.Q569L|RIMS1_uc003pgc.2_Missense_Mutation_p.Q570L|RIMS1_uc010kaq.2_Missense_Mutation_p.Q417L|RIMS1_uc011dyc.1_Missense_Mutation_p.Q418L|RIMS1_uc010kar.2_Missense_Mutation_p.Q337L|RIMS1_uc011dyd.1_Missense_Mutation_p.Q403L|RIMS1_uc003pgf.2_Missense_Mutation_p.Q160L|RIMS1_uc003pgg.2_Missense_Mutation_p.Q161L|RIMS1_uc003pgi.2_Missense_Mutation_p.Q160L|RIMS1_uc003pgh.2_Missense_Mutation_p.Q160L|RIMS1_uc003pgd.2_Missense_Mutation_p.Q161L|RIMS1_uc003pge.2_Missense_Mutation_p.Q161L|RIMS1_uc011dye.1_5'UTR|RIMS1_uc011dyf.1_5'Flank|RIMS1_uc003pgb.3_Missense_Mutation_p.Q570L|RIMS1_uc010kas.1_Missense_Mutation_p.Q403L	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	944					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CCAGAACAGCAAAGAACAACT	0.428													11	23					0	0	0.000673	0	0
RIMS1	22999	broad.mit.edu	37	6	73108791	73108791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:73108791C>T	uc003pga.2	+	33	4932	c.4855C>T	c.(4855-4857)CTT>TTT	p.L1619F	RIMS1_uc011dyb.1_Missense_Mutation_p.L1016F|RIMS1_uc003pgc.2_Missense_Mutation_p.L1034F|RIMS1_uc010kaq.2_Missense_Mutation_p.L939F|RIMS1_uc011dyc.1_Missense_Mutation_p.L744F|RIMS1_uc010kar.2_Missense_Mutation_p.L687F|RIMS1_uc011dyd.1_Missense_Mutation_p.L753F|RIMS1_uc003pgf.2_Missense_Mutation_p.L619F|RIMS1_uc003pgg.2_Missense_Mutation_p.L515F|RIMS1_uc003pgi.2_Missense_Mutation_p.L435F|RIMS1_uc003pgh.2_Missense_Mutation_p.L486F|RIMS1_uc003pgd.2_Missense_Mutation_p.L685F|RIMS1_uc003pge.2_Missense_Mutation_p.L659F|RIMS1_uc011dye.1_Missense_Mutation_p.L425F|RIMS1_uc011dyf.1_Missense_Mutation_p.L243F|RIMS1_uc011dyg.1_Missense_Mutation_p.L146F	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1619	C2 2.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GGGTAAAGTTCTTCAGGTCAG	0.373													23	48					0	0	0.004656	0	0
KCNQ5	56479	broad.mit.edu	37	6	73751702	73751702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:73751702G>A	uc003pgk.2	+	3	880	c.533G>A	c.(532-534)CGA>CAA	p.R178Q	KCNQ5_uc003pgj.3_Missense_Mutation_p.R178Q|KCNQ5_uc011dyh.1_Missense_Mutation_p.R178Q|KCNQ5_uc011dyi.1_Missense_Mutation_p.R178Q|KCNQ5_uc010kat.2_Missense_Mutation_p.R178Q|KCNQ5_uc011dyj.1_Missense_Mutation_p.R178Q|KCNQ5_uc011dyk.1_Intron	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	178					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TTCATCATTCGAATCTGGTCT	0.428													74	109					0	0	0.003610	0	0
KCNQ5	56479	broad.mit.edu	37	6	73900323	73900323	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:73900323G>A	uc003pgk.2	+	12	1952	c.1605G>A	c.(1603-1605)CGG>CGA	p.R535R	KCNQ5_uc011dyh.1_Silent_p.R554R|KCNQ5_uc011dyi.1_Silent_p.R545R|KCNQ5_uc010kat.2_Silent_p.R526R|KCNQ5_uc011dyj.1_Silent_p.R425R|KCNQ5_uc011dyk.1_Silent_p.R285R	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	535					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TTGCAAAACGGAAGTTTAAGG	0.289													20	18					0	0	0.000958	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904846	73904846	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:73904846C>T	uc003pgk.2	+	14	2855	c.2508C>T	c.(2506-2508)ATC>ATT	p.I836I	KCNQ5_uc011dyh.1_Silent_p.I855I|KCNQ5_uc011dyi.1_Silent_p.I846I|KCNQ5_uc010kat.2_Silent_p.I827I|KCNQ5_uc011dyj.1_Silent_p.I726I|KCNQ5_uc011dyk.1_Silent_p.I586I	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	836					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		AAAACCTGATCAGGTCGACCG	0.473													15	29					0	0	0.000743	0	0
DPPA5	340168	broad.mit.edu	37	6	74063680	74063680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:74063680G>A	uc003pgs.1	-	2	193	c.188C>T	c.(187-189)TCA>TTA	p.S63L		NM_001025290	NP_001020461	A6NC42	DPPA5_HUMAN	developmental pluripotency associated 5	63	KH; atypical.				multicellular organismal development	cytoplasm	RNA binding				0						GGTGAGGTCTGAAGACTCCAG	0.582													21	30					0	0	0.003330	0	0
OOEP	441161	broad.mit.edu	37	6	74079509	74079509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:74079509C>T	uc003pgu.3	-	1	7	c.7G>A	c.(7-9)GAT>AAT	p.D3N	OOEP_uc003pgv.3_Intron	NM_001080507	NP_001073976	A6NGQ2	OOEP_HUMAN	oocyte expressed protein homolog	3						cytoplasm					0						CCAGCATCATCGACCATACTG	0.627													15	39					0	0	0.002450	0	0
C6orf150	115004	broad.mit.edu	37	6	74155359	74155359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:74155359G>A	uc003pgx.1	-	2	908	c.769C>T	c.(769-771)CCG>TCG	p.P257S		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	257											0						TTTTCTTTCGGATTTCTTTTA	0.313													36	29					0	0	0.003755	0	0
CD109	135228	broad.mit.edu	37	6	74481165	74481166	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:74481165_74481166GG>AA	uc003php.2	+	15	2113_2114	c.1688_1689GG>AA	c.(1687-1689)TGG>TAA	p.W563*	CD109_uc010kaz.2_Nonsense_Mutation_p.W563*|CD109_uc003phq.2_Nonsense_Mutation_p.W563*|CD109_uc010kba.2_Nonsense_Mutation_p.W486*	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	563						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						AAGCTATATTGGAGTAAAGTGA	0.381													29	35					0	0	0.004672	0	0
CD109	135228	broad.mit.edu	37	6	74516594	74516594	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:74516594C>T	uc003php.2	+	25	3413	c.2988C>T	c.(2986-2988)TTC>TTT	p.F996F	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Silent_p.F996F|CD109_uc010kba.2_Silent_p.F919F	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	996						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TAAGATGTTTCCTTGAAGCCG	0.343													13	18					0	0	0.004007	0	0
TMEM30A	55754	broad.mit.edu	37	6	75965936	75965936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:75965936G>A	uc003phw.2	-	7	1246	c.968C>T	c.(967-969)CCA>CTA	p.P323L	TMEM30A_uc003phx.2_Missense_Mutation_p.P287L	NM_018247	NP_060717	Q9NV96	CC50A_HUMAN	transmembrane protein 30A isoform 1	323						integral to membrane					0						CCCCAAAAATGGATTTTTTCC	0.368													39	47					0	0	0.002222	0	0
FILIP1	27145	broad.mit.edu	37	6	76023302	76023302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:76023302G>A	uc003pia.2	-	5	2619	c.2246C>T	c.(2245-2247)TCT>TTT	p.S749F	FILIP1_uc003phy.1_Missense_Mutation_p.S749F|FILIP1_uc003phz.2_Missense_Mutation_p.S650F|FILIP1_uc010kbe.2_Missense_Mutation_p.S752F|FILIP1_uc003pib.1_Missense_Mutation_p.S501F	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	749	Potential.									skin(3)|ovary(1)	4						TTGAAGTACAGAATAATCTAC	0.383													48	49					0	0	0.003610	0	0
FILIP1	27145	broad.mit.edu	37	6	76023924	76023924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:76023924C>T	uc003pia.2	-	5	1997	c.1624G>A	c.(1624-1626)GAT>AAT	p.D542N	FILIP1_uc003phy.1_Missense_Mutation_p.D542N|FILIP1_uc003phz.2_Missense_Mutation_p.D443N|FILIP1_uc010kbe.2_Missense_Mutation_p.D545N|FILIP1_uc003pib.1_Missense_Mutation_p.D294N	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	542	Potential.									skin(3)|ovary(1)	4						TCAGTTACATCCATAACTTTT	0.289													18	17					0	0	0.000743	0	0
FILIP1	27145	broad.mit.edu	37	6	76023970	76023970	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:76023970C>T	uc003pia.2	-	5	1951	c.1578G>A	c.(1576-1578)GTG>GTA	p.V526V	FILIP1_uc003phy.1_Silent_p.V526V|FILIP1_uc003phz.2_Silent_p.V427V|FILIP1_uc010kbe.2_Silent_p.V529V|FILIP1_uc003pib.1_Silent_p.V278V	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	526	Potential.									skin(3)|ovary(1)	4						TGAGTCCATCCACTTTTCTCT	0.303													22	31					0	0	0.001882	0	0
FILIP1	27145	broad.mit.edu	37	6	76072564	76072564	+	Missense_Mutation	SNP	C	T	T	rs140731996		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:76072564C>T	uc003pia.2	-	3	719	c.346G>A	c.(346-348)GGG>AGG	p.G116R	FILIP1_uc003phy.1_Missense_Mutation_p.G116R|FILIP1_uc003phz.2_Missense_Mutation_p.G17R|FILIP1_uc010kbe.2_Missense_Mutation_p.G119R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	116										skin(3)|ovary(1)	4						TCCGCAGACCCGTAATGAGCC	0.502													28	68					0	0	0.001271	0	0
LCA5	167691	broad.mit.edu	37	6	80197298	80197298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:80197298G>A	uc003pix.2	-	8	1952	c.1517C>T	c.(1516-1518)CCC>CTC	p.P506L	LCA5_uc003piy.2_Missense_Mutation_p.P506L	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	506					protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		GTATGTTTTGGGGCTTCTCTC	0.388													49	67					0	0	0.003610	0	0
DOPEY1	23033	broad.mit.edu	37	6	83866994	83866994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:83866994C>T	uc003pjs.1	+	35	6958	c.6698C>T	c.(6697-6699)CCC>CTC	p.P2233L	DOPEY1_uc011dyy.1_Missense_Mutation_p.P2224L|DOPEY1_uc010kbl.1_Missense_Mutation_p.P2224L|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	2233					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		AGAATGTCTCCCCAACATCTT	0.383													27	64					0	0	0.001271	0	0
ME1	4199	broad.mit.edu	37	6	83921771	83921771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:83921771G>A	uc003pjy.2	-	14	1697	c.1591C>T	c.(1591-1593)CCT>TCT	p.P531S	ME1_uc011dzb.1_Missense_Mutation_p.P456S|ME1_uc011dzc.1_Missense_Mutation_p.P365S	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	531					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TGCGGTTCAGGATAAACTGTG	0.358													38	33					0	0	0.003610	0	0
ME1	4199	broad.mit.edu	37	6	84055912	84055912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:84055912C>T	uc003pjy.2	-	5	686	c.580G>A	c.(580-582)GAT>AAT	p.D194N	ME1_uc011dzb.1_Missense_Mutation_p.D119N|ME1_uc011dzc.1_Missense_Mutation_p.D28N	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	194					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	GTTCCCACATCCAGAATGACA	0.413													25	41					0	0	0.001271	0	0
ME1	4199	broad.mit.edu	37	6	84108201	84108201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:84108201C>T	uc003pjy.2	-	3	353	c.247G>A	c.(247-249)GAA>AAA	p.E83K	ME1_uc011dzb.1_Missense_Mutation_p.E8K|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	83					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	AAGAGTTTTTCATTTCTATCT	0.343													15	36					0	0	0.004007	0	0
SNAP91	9892	broad.mit.edu	37	6	84350864	84350864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:84350864C>T	uc011dze.1	-	8	1033	c.716G>A	c.(715-717)CGA>CAA	p.R239Q	SNAP91_uc003pkb.2_Missense_Mutation_p.R204Q|SNAP91_uc003pkc.2_Missense_Mutation_p.R239Q|SNAP91_uc003pkd.2_Missense_Mutation_p.R239Q|SNAP91_uc003pka.2_Missense_Mutation_p.R239Q|SNAP91_uc011dzf.1_Missense_Mutation_p.R120Q	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	239					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		AGTTAGAAATCGTTTGTAAAT	0.284													4	5					0	0	0.000602	0	0
SNAP91	9892	broad.mit.edu	37	6	84417550	84417550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:84417550C>T	uc011dze.1	-	2	414	c.97G>A	c.(97-99)GAA>AAA	p.E33K	SNAP91_uc003pkb.2_5'UTR|SNAP91_uc003pkc.2_Missense_Mutation_p.E33K|SNAP91_uc003pkd.2_Missense_Mutation_p.E33K|SNAP91_uc003pka.2_Missense_Mutation_p.E33K|SNAP91_uc011dzf.1_5'UTR	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	33	ENTH.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		CCCATTACTTCATGAGTAGTG	0.567													36	46					0	0	0.002522	0	0
CYB5R4	51167	broad.mit.edu	37	6	84669579	84669579	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:84669579C>T	uc003pkf.2	+	16	1680	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	516					cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		AAAATGAGATCCATAGTTTTA	0.303													13	13					0	0	0.002450	0	0
ZNF292	23036	broad.mit.edu	37	6	87967604	87967604	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:87967604T>A	uc003plm.3	+	8	4298	c.4257T>A	c.(4255-4257)CCT>CCA	p.P1419P		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1419					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		ATGGACAGCCTTCTCTTCTTG	0.438													68	84					0	0	0.003610	0	0
C6orf165	154313	broad.mit.edu	37	6	88170799	88170799	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:88170799G>A	uc003plv.2	+	12	1646	c.1554G>A	c.(1552-1554)CAG>CAA	p.Q518Q	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Silent_p.Q330Q|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	518										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		GTAGCACACAGACGAATACAC	0.323													20	35					0	0	0.001523	0	0
CNR1	1268	broad.mit.edu	37	6	88854040	88854040	+	Silent	SNP	G	A	A	rs77173482		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:88854040G>A	uc011dzq.1	-	2	4517	c.954C>T	c.(952-954)ATC>ATT	p.I318I	CNR1_uc010kbz.2_Silent_p.I318I|CNR1_uc011dzr.1_Silent_p.I318I|CNR1_uc011dzs.1_Silent_p.I318I|CNR1_uc003pmq.3_Silent_p.I318I|CNR1_uc011dzt.1_Silent_p.I318I|CNR1_uc010kca.2_Silent_p.I285I	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	318	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	ACGTGTGGATGATGATGCTCT	0.547													28	40					0	0	0.004656	0	0
CNR1	1268	broad.mit.edu	37	6	88854820	88854820	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:88854820G>A	uc011dzq.1	-	2	3737	c.174C>T	c.(172-174)TTC>TTT	p.F58F	CNR1_uc010kbz.2_Silent_p.F58F|CNR1_uc011dzr.1_Silent_p.F58F|CNR1_uc011dzs.1_Silent_p.F58F|CNR1_uc003pmq.3_Silent_p.F58F|CNR1_uc011dzt.1_Silent_p.F58F|CNR1_uc010kca.2_Silent_p.F25F	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	58	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	TCTTCTCTTGGAAGGGACTTC	0.458													12	18					0	0	0.001368	0	0
GABRR1	2569	broad.mit.edu	37	6	89926975	89926975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:89926975C>T	uc003pna.2	-	1	522	c.67G>A	c.(67-69)GAA>AAA	p.E23K	GABRR1_uc011dzv.1_Missense_Mutation_p.E17K|GABRR1_uc011dzw.1_RNA	NM_002042	NP_002033	P24046	GBRR1_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 1	23	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			pancreas(1)	1		all_cancers(76;9.49e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.46e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00917)	Picrotoxin(DB00466)	ATTCTGCTTTCAGTGGCCAAA	0.463													14	21					0	0	0.001216	0	0
GJA10	84694	broad.mit.edu	37	6	90604397	90604397	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:90604397C>T	uc011eaa.1	+	1	210	c.210C>T	c.(208-210)TTC>TTT	p.F70F		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	70	Extracellular (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		ATGATGCATTCCCTATCTCTT	0.468													17	24					0	0	0.004990	0	0
GJA10	84694	broad.mit.edu	37	6	90604403	90604403	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:90604403C>T	uc011eaa.1	+	1	216	c.216C>T	c.(214-216)ATC>ATT	p.I72I		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	72	Extracellular (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		CATTCCCTATCTCTTTGATCA	0.463													16	23					0	0	0.003163	0	0
GJA10	84694	broad.mit.edu	37	6	90604881	90604881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:90604881C>T	uc011eaa.1	+	1	694	c.694C>T	c.(694-696)CAT>TAT	p.H232Y		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	232	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		GGAAATATTTCATCTAGGCAT	0.388													34	46					0	0	0.004289	0	0
GJA10	84694	broad.mit.edu	37	6	90605568	90605568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:90605568C>T	uc011eaa.1	+	1	1381	c.1381C>T	c.(1381-1383)CCT>TCT	p.P461S		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	461	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		CTTGGATTTTCCTCACTGGGA	0.507													30	51					0	0	0.001786	0	0
EPHA7	2045	broad.mit.edu	37	6	93979326	93979326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:93979326G>A	uc003poe.2	-	7	1743	c.1502C>T	c.(1501-1503)TCC>TTC	p.S501F	EPHA7_uc003pof.2_Missense_Mutation_p.S501F|EPHA7_uc011eac.1_Missense_Mutation_p.S501F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	501	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		ATTATTAATGGAGGCTGAAGT	0.388													38	65					0	0	0.002852	0	0
EPHA7	2045	broad.mit.edu	37	6	94120377	94120377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:94120377G>A	uc003poe.2	-	3	915	c.674C>T	c.(673-675)TCC>TTC	p.S225F	EPHA7_uc003pof.2_Missense_Mutation_p.S225F|EPHA7_uc011eac.1_Missense_Mutation_p.S225F|EPHA7_uc003pog.3_Missense_Mutation_p.S225F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	225	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GACTAAAGAGGAAAATTCTGA	0.463													15	40					0	0	0.003163	0	0
FUT9	10690	broad.mit.edu	37	6	96652059	96652059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:96652059G>A	uc003pop.3	+	3	1369	c.1028G>A	c.(1027-1029)AGG>AAG	p.R343K		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	343	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CATGTGAAAAGGCATCAAGAA	0.323													36	43					0	0	0.003271	0	0
FHL5	9457	broad.mit.edu	37	6	97051638	97051638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:97051638C>T	uc003pos.1	+	3	554	c.149C>T	c.(148-150)TCT>TTT	p.S50F	FHL5_uc003pot.1_Missense_Mutation_p.S50F	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	50	LIM zinc-binding 1.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		CCAATTGAATCTGATTCTAAG	0.363													29	47					0	0	0.002096	0	0
GPR63	81491	broad.mit.edu	37	6	97246357	97246357	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:97246357C>T	uc010kcl.2	-	3	1729	c.1251G>A	c.(1249-1251)ACG>ACA	p.T417T	GPR63_uc003pou.2_Silent_p.T417T	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	417	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		TTCACACCACCGTCCGATGTT	0.438													16	25					0	0	0.001216	0	0
MCHR2	84539	broad.mit.edu	37	6	100395740	100395740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:100395740C>T	uc003pqh.1	-	3	605	c.290G>A	c.(289-291)GGA>GAA	p.G97E	MCHR2_uc003pqi.1_Missense_Mutation_p.G97E	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	97	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		CACCCACTCTCCCCCTCGGGC	0.488													33	50					0	0	0.002096	0	0
SIM1	6492	broad.mit.edu	37	6	100841499	100841499	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:100841499G>A	uc003pqj.3	-	10	1641	c.1434C>T	c.(1432-1434)TTC>TTT	p.F478F	SIM1_uc010kcu.2_Silent_p.F478F	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	478	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		GCGTTCCCAGGAAGTACCTGC	0.612													18	26					0	0	0.000958	0	0
HACE1	57531	broad.mit.edu	37	6	105192055	105192055	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:105192055G>A	uc003pqu.1	-	22	2770	c.2493C>T	c.(2491-2493)CTC>CTT	p.L831L	HACE1_uc010kcy.1_Silent_p.L313L|HACE1_uc010kcz.1_Silent_p.L616L|HACE1_uc010kcx.1_Silent_p.L240L|HACE1_uc003pqt.1_Silent_p.L484L	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	831	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		CAAACTGTAAGAGAAGAACTC	0.328													35	66					0	0	0.003271	0	0
BVES	11149	broad.mit.edu	37	6	105572425	105572425	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:105572425G>A	uc003pqw.2	-	5	802	c.645C>T	c.(643-645)TTC>TTT	p.F215F	BVES_uc003pqx.2_Silent_p.F215F|BVES_uc003pqy.2_Silent_p.F215F	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	215	Cytoplasmic (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				AACATACCTGGAATTTTTCAC	0.353													38	60					0	0	0.004878	0	0
POPDC3	64208	broad.mit.edu	37	6	105609341	105609341	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:105609341C>T	uc003prb.2	-	2	846	c.444G>A	c.(442-444)GGG>GGA	p.G148G	uc003pqz.2_Intron|POPDC3_uc003pra.2_Intron	NM_022361	NP_071756	Q9HBV1	POPD3_HUMAN	popeye protein 3	148						integral to membrane				skin(3)|ovary(2)	5		all_cancers(87;4.87e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0157)|Colorectal(196;0.202)|Lung NSC(302;0.238)				TGGAAGTTTTCCCCTGCATGG	0.428													30	52					0	0	0.001512	0	0
PRDM1	639	broad.mit.edu	37	6	106543553	106543553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:106543553G>A	uc003prd.2	+	3	589	c.355G>A	c.(355-357)GAA>AAA	p.E119K		NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	119	SET.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CCTAATAGGTGAAATCTACAC	0.373			D|N|Mis|F|S		DLBCL								16	23					0	0	0.004990	0	0
AIM1	202	broad.mit.edu	37	6	106968327	106968327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:106968327G>A	uc003prh.2	+	2	2507	c.2020G>A	c.(2020-2022)GAT>AAT	p.D674N		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	674							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		AAATGGCCAGGATAGCCCTGC	0.438													22	32					0	0	0.003330	0	0
AIM1	202	broad.mit.edu	37	6	106987353	106987353	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:106987353C>T	uc003prh.2	+	7	4057	c.3570C>T	c.(3568-3570)TCC>TCT	p.S1190S	AIM1_uc003pri.2_5'Flank	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1190	Beta/gamma crystallin 'Greek key' 4.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CTGACTTGTCCTTCTGGGATA	0.443													42	62					0	0	0.001951	0	0
SOBP	55084	broad.mit.edu	37	6	107956606	107956606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:107956606G>A	uc003prx.2	+	6	3062	c.2558G>A	c.(2557-2559)GGG>GAG	p.G853E		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	853							metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		CTCAGCGCCGGGCCTGAGGAC	0.602													49	57					0	0	0.003610	0	0
ARMC2	84071	broad.mit.edu	37	6	109233635	109233636	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:109233635_109233636GG>AT	uc003pss.3	+	10	1398_1399	c.1224_1225GG>AT	c.(1222-1227)CTGGGA>CTATGA	p.G409*	ARMC2_uc011eao.1_Nonsense_Mutation_p.G244*	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	409	ARM 4.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		CTGGAAATCTGGGATTTCTTAA	0.332													27	43					0	0	0.004672	0	0
C6orf182	285753	broad.mit.edu	37	6	109468002	109468002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:109468002C>T	uc010kdk.2	+	5	779	c.202C>T	c.(202-204)CGT>TGT	p.R68C	C6orf182_uc003psv.3_Missense_Mutation_p.R68C|C6orf182_uc003psw.3_Missense_Mutation_p.R68C|C6orf182_uc003psx.3_Missense_Mutation_p.R68C|C6orf182_uc010kdl.2_Missense_Mutation_p.R68C|C6orf182_uc003psy.3_Missense_Mutation_p.R68C	NM_001083535	NP_001077004	Q8IYX8	CE57L_HUMAN	hypothetical protein LOC285753	68	Potential.					microtubule|microtubule organizing center					0		all_cancers(87;4.45e-07)|Acute lymphoblastic leukemia(125;2.15e-10)|all_hematologic(75;3.25e-08)|all_epithelial(87;0.000254)|Colorectal(196;0.0293)|all_lung(197;0.11)		BRCA - Breast invasive adenocarcinoma(108;0.00123)|Epithelial(106;0.0022)|all cancers(137;0.00405)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)		AAAAATTCATCGTTTAGAGCT	0.333													14	14					0	0	0.003163	0	0
DDO	8528	broad.mit.edu	37	6	110714218	110714218	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:110714218C>T	uc003puc.2	-	5	874	c.870G>A	c.(868-870)GAG>GAA	p.E290E	C6orf186_uc003pub.2_Intron|DDO_uc003pud.2_Silent_p.E231E	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	262					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		GGAGGGAGGGCTCCAGAGCAC	0.582													47	64					0	0	0.003610	0	0
SLC22A16	85413	broad.mit.edu	37	6	110763887	110763887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:110763887G>A	uc003puf.2	-	4	810	c.743C>T	c.(742-744)TCC>TTC	p.S248F	SLC22A16_uc003pue.2_Missense_Mutation_p.S229F	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	248	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		TGCAAAAAAGGAATGCAAATG	0.488													13	39					0	0	0.001855	0	0
TUBE1	51175	broad.mit.edu	37	6	112393209	112393209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:112393209G>A	uc003pvq.2	-	11	1279	c.1165C>T	c.(1165-1167)CCT>TCT	p.P389S	TUBE1_uc003pvr.2_Missense_Mutation_p.P314S	NM_016262	NP_057346	Q9UJT0	TBE_HUMAN	tubulin, epsilon 1	389					centrosome cycle|microtubule-based movement|protein polymerization	microtubule|pericentriolar material	GTP binding|GTPase activity|structural constituent of cytoskeleton			ovary(1)	1		all_cancers(87;0.0101)|all_hematologic(75;0.000258)|Colorectal(196;0.0466)|all_epithelial(87;0.1)		all cancers(137;0.0217)|OV - Ovarian serous cystadenocarcinoma(136;0.0613)|Epithelial(106;0.0636)|GBM - Glioblastoma multiforme(226;0.0972)|BRCA - Breast invasive adenocarcinoma(108;0.246)		TGGCCCACAGGAGGTACGGAA	0.408													28	67					0	0	0.001786	0	0
MARCKS	4082	broad.mit.edu	37	6	114179007	114179007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:114179007C>T	uc003pvy.3	+	1	481	c.86C>T	c.(85-87)TCC>TTC	p.S29F		NM_002356	NP_002347	P29966	MARCS_HUMAN	myristoylated alanine-rich protein kinase C	29					energy reserve metabolic process|regulation of insulin secretion	actin cytoskeleton|plasma membrane	actin filament binding|calmodulin binding				0		all_cancers(87;7.65e-05)|all_epithelial(87;0.000296)|all_hematologic(75;0.0172)|Colorectal(196;0.0317)|all_lung(197;0.198)		Epithelial(106;1.59e-07)|all cancers(137;9.85e-07)|OV - Ovarian serous cystadenocarcinoma(136;0.000322)		TCGTCGCCTTCCAAAGCGAAC	0.587													7	8					0	0	0.003080	0	0
FAM26F	441168	broad.mit.edu	37	6	116784648	116784648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:116784648G>A	uc003pwv.2	+	3	823	c.728G>A	c.(727-729)GGC>GAC	p.G243D		NM_001010919	NP_001010919	Q5R3K3	FA26F_HUMAN	hypothetical protein LOC441168	243						integral to membrane					0				GBM - Glioblastoma multiforme(226;0.0402)|all cancers(137;0.0627)|OV - Ovarian serous cystadenocarcinoma(136;0.0655)|Epithelial(106;0.231)		TTCTTTGAGGGCTCGCATCCA	0.398													51	76					0	0	0.003610	0	0
FAM26E	254228	broad.mit.edu	37	6	116832945	116832945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:116832945G>A	uc003pwy.2	+	1	138	c.86G>A	c.(85-87)GGA>GAA	p.G29E	BET3L_uc003pwx.2_Intron|BET3L_uc011ebh.1_Intron	NM_153711	NP_714922	Q8N5C1	FA26E_HUMAN	hypothetical protein LOC254228	29	Helical; (Potential).					integral to membrane					0		all_cancers(87;0.0608)|all_epithelial(87;0.05)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0242)|all cancers(137;0.0419)|OV - Ovarian serous cystadenocarcinoma(136;0.0671)|Epithelial(106;0.212)		CTGACCGTGGGAAGTGAGCGT	0.463													40	67					0	0	0.001287	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113512	117113512	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117113512G>A	uc003pxj.1	-	6	2596	c.2574C>T	c.(2572-2574)TCC>TCT	p.S858S	GPRC6A_uc003pxk.1_Silent_p.S683S|GPRC6A_uc003pxl.1_Silent_p.S787S	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	858	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TCACACTATGGGAAGAATAAC	0.443													28	38					0	0	0.001271	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113925	117113925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117113925G>A	uc003pxj.1	-	6	2183	c.2161C>T	c.(2161-2163)CTC>TTC	p.L721F	GPRC6A_uc003pxk.1_Missense_Mutation_p.L546F|GPRC6A_uc003pxl.1_Missense_Mutation_p.L650F	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	721	Helical; Name=4; (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		ATTAGCCAGAGTGTGCAAATG	0.463													22	25					0	0	0.003330	0	0
RFX6	222546	broad.mit.edu	37	6	117232120	117232120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117232120C>T	uc003pxm.2	+	7	758	c.695C>T	c.(694-696)TCG>TTG	p.S232L		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	232					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CGTAAATATTCGCTTAGCTCA	0.343													31	57					0	0	0.004289	0	0
RFX6	222546	broad.mit.edu	37	6	117244329	117244329	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117244329G>A	uc003pxm.2	+	14	1560	c.1497G>A	c.(1495-1497)TGG>TGA	p.W499*		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	499					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TGTTAAAGTGGAGTTTTTTTG	0.338													39	45					0	0	0.001485	0	0
RFX6	222546	broad.mit.edu	37	6	117252551	117252551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117252551C>T	uc003pxm.2	+	19	2732	c.2669C>T	c.(2668-2670)TCC>TTC	p.S890F		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	890					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TATGGAACTTCCAACCAGTAT	0.418													37	41					0	0	0.003755	0	0
ROS1	6098	broad.mit.edu	37	6	117641174	117641174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117641174C>T	uc003pxp.1	-	36	5996	c.5797G>A	c.(5797-5799)GAG>AAG	p.E1933K	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Missense_Mutation_p.E259K	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1933	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TTTTCAATCTCCTCTTGGGTT	0.448			T	GOPC|ROS1	glioblastoma|NSCLC								17	22					0	0	0.004007	0	0
ROS1	6098	broad.mit.edu	37	6	117662562	117662563	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117662562_117662563CC>TT	uc003pxp.1	-	29	5101	c.4902_splice	c.e29+1	p.K1634_splice	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor						transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ACTCACTGTACCTTTAACACAT	0.391			T	GOPC|ROS1	glioblastoma|NSCLC								26	41					0	0	0.004672	0	0
ROS1	6098	broad.mit.edu	37	6	117674156	117674156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117674156G>A	uc003pxp.1	-	26	4517	c.4318C>T	c.(4318-4320)CCA>TCA	p.P1440S	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1440	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TTATTACCTGGAAAAGGCTGC	0.443			T	GOPC|ROS1	glioblastoma|NSCLC								22	41					0	0	0.003954	0	0
ROS1	6098	broad.mit.edu	37	6	117674323	117674323	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117674323G>C	uc003pxp.1	-	26	4350	c.4151C>G	c.(4150-4152)ACC>AGC	p.T1384S	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1384	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GCTAACAAGGGTTTTTCCTGC	0.308			T	GOPC|ROS1	glioblastoma|NSCLC								11	29					0	0	0.001368	0	0
ROS1	6098	broad.mit.edu	37	6	117710795	117710795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:117710795G>A	uc003pxp.1	-	12	1676	c.1477C>T	c.(1477-1479)CGC>TGC	p.R493C	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	493	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		AAGGGGATGCGAGGTAGGATG	0.423			T	GOPC|ROS1	glioblastoma|NSCLC								25	40					0	0	0.004656	0	0
MCM9	254394	broad.mit.edu	37	6	119245183	119245183	+	Silent	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:119245183A>C	uc003pyh.2	-	3	677	c.414T>G	c.(412-414)GTT>GTG	p.V138V		NM_153255	NP_694987	Q9NXL9	MCM9_HUMAN	minichromosome maintenance complex component 9	138					DNA replication		ATP binding|DNA binding|nucleoside-triphosphatase activity			ovary(1)	1		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.194)		CAAACTCCAGAACCTTCACCA	0.463													85	128					0	0	0.003610	0	0
MAN1A1	4121	broad.mit.edu	37	6	119511042	119511042	+	Missense_Mutation	SNP	C	T	T	rs147835021		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:119511042C>T	uc003pym.1	-	10	1775	c.1333G>A	c.(1333-1335)GAG>AAG	p.E445K		NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	445	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		AAATGAGTCTCGATAGCCTGT	0.393													8	15					0	0	0.000443	0	0
MAN1A1	4121	broad.mit.edu	37	6	119569512	119569512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:119569512C>T	uc003pym.1	-	6	1347	c.905G>A	c.(904-906)CGA>CAA	p.R302Q	MAN1A1_uc010kei.1_Missense_Mutation_p.R325Q	NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	302	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		TGCTTTCTTTCGAAAAATCTG	0.348													11	15					0	0	0.001368	0	0
C6orf170	221322	broad.mit.edu	37	6	121600266	121600266	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:121600266C>T	uc003pyo.1	-	15	1801	c.1733_splice	c.e15+1	p.S578_splice	C6orf170_uc003pyq.1_Splice_Site|C6orf170_uc003pyp.1_Splice_Site_p.S97_splice	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322						multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		ATAGCACATACCTTTCTTCAG	0.323													25	35					0	0	0.004656	0	0
GJA1	2697	broad.mit.edu	37	6	121768107	121768107	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:121768107G>A	uc003pyr.2	+	2	364	c.114G>A	c.(112-114)GGG>GGA	p.G38G	GJA1_uc011ebo.1_Intron|GJA1_uc011ebp.1_5'UTR	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	38	Extracellular (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	TGCTGCTGGGGACAGCGGTTG	0.507													26	39					0	0	0.001061	0	0
GJA1	2697	broad.mit.edu	37	6	121768740	121768740	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:121768740G>A	uc003pyr.2	+	2	997	c.747G>A	c.(745-747)GCG>GCA	p.A249A	GJA1_uc011ebo.1_Silent_p.A150A|GJA1_uc011ebp.1_Silent_p.A37A	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	249	Cytoplasmic (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	CTTACCATGCGACCAGTGGTG	0.507													19	40					0	0	0.001523	0	0
STL	7955	broad.mit.edu	37	6	125269104	125269104	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:125269104G>A	uc003pzq.2	-	2		c.346C>T				NR_026876				Homo sapiens mRNA; cDNA DKFZp451I132 (from clone DKFZp451I132).												0						AGCAGATCACGACCCCATATG	0.368			T	ETV6	B-ALL								14	33					0	0	0.004990	0	0
THEMIS	387357	broad.mit.edu	37	6	128176254	128176254	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:128176254C>T	uc003qbi.2	-	3	490	c.171G>A	c.(169-171)AAG>AAA	p.K57K	THEMIS_uc010kfa.2_5'UTR|THEMIS_uc011ebt.1_Silent_p.K57K|THEMIS_uc010kfb.2_Silent_p.K22K	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	57	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CTATGATCTTCTTAACTTTGA	0.353													16	34					0	0	0.003163	0	0
PTPRK	5796	broad.mit.edu	37	6	128563672	128563672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:128563672G>A	uc003qbk.2	-	4	938	c.571C>T	c.(571-573)CCT>TCT	p.P191S	PTPRK_uc003qbj.2_Missense_Mutation_p.P191S|PTPRK_uc010kfc.2_Missense_Mutation_p.P191S|PTPRK_uc011ebu.1_Missense_Mutation_p.P191S|PTPRK_uc003qbl.1_Missense_Mutation_p.P61S|PTPRK_uc011ebv.1_Missense_Mutation_p.P191S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	191	Extracellular (Potential).|MAM.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CTACCACAAGGATAACTCAGT	0.353													10	34					0	0	0.000978	0	0
TMEM200A	114801	broad.mit.edu	37	6	130761883	130761883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:130761883C>T	uc003qca.2	+	3	1187	c.316C>T	c.(316-318)CGG>TGG	p.R106W	TMEM200A_uc010kfh.2_Missense_Mutation_p.R106W|TMEM200A_uc010kfi.2_Missense_Mutation_p.R106W|TMEM200A_uc003qcb.2_Missense_Mutation_p.R106W	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	106	Extracellular (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		TCAGGTCATTCGGAATGAAGG	0.418													33	34					0	0	0.002445	0	0
MED23	9439	broad.mit.edu	37	6	131931276	131931276	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:131931276G>A	uc003qcs.1	-	11	1161	c.987C>T	c.(985-987)CTC>CTT	p.L329L	MED23_uc003qcq.2_Silent_p.L335L|MED23_uc011eca.1_Silent_p.L18L|MED23_uc003qct.1_Silent_p.L335L|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	329					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		GCTGCCACAGGAGTTGGCTTG	0.483													21	30					0	0	0.004656	0	0
CTAGE9	643854	broad.mit.edu	37	6	132031899	132031899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:132031899C>T	uc011ece.1	-	1	259	c.259G>A	c.(259-261)GAA>AAA	p.E87K	ENPP3_uc003qcu.3_Intron|ENPP3_uc010kfq.2_Intron|ENPP3_uc003qcv.2_Intron	NM_001145659	NP_001139131	A4FU28	CTGE9_HUMAN	CTAGE family, member 4-like	87						integral to membrane					0						CATTTTTCTTCAATTAGTCCA	0.383													36	68					0	0	0.003610	0	0
TAAR2	9287	broad.mit.edu	37	6	132939236	132939236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:132939236C>T	uc003qdl.1	-	2	109	c.109G>A	c.(109-111)GAA>AAA	p.E37K	TAAR2_uc010kfr.1_5'Flank	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	37	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		AGAGATCTTTCATTTTCTGGG	0.328													26	43					0	0	0.001061	0	0
VNN1	8876	broad.mit.edu	37	6	133014378	133014378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:133014378C>T	uc003qdo.2	-	4	631	c.611G>A	c.(610-612)GGA>GAA	p.G204E		NM_004666	NP_004657	O95497	VNN1_HUMAN	vanin 1 precursor	204	CN hydrolase.				acute inflammatory response|anti-apoptosis|cell-cell adhesion|cellular component movement|chronic inflammatory response|innate immune response|pantothenate metabolic process|positive regulation of T cell differentiation in thymus|response to oxidative stress	anchored to membrane|integral to membrane|plasma membrane	GPI anchor binding|pantetheine hydrolase activity			ovary(3)	3	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.0027)|GBM - Glioblastoma multiforme(226;0.0189)		GCCAAAACTTCCAAAGGTGGT	0.398													19	37					0	0	0.000958	0	0
VNN3	55350	broad.mit.edu	37	6	133055829	133055829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:133055829C>T	uc003qdp.2	-	1	75	c.3G>A	c.(1-3)ATG>ATA	p.M1I	VNN3_uc010kfs.2_5'UTR|VNN3_uc011ecl.1_RNA|VNN3_uc011ecm.1_5'UTR|VNN3_uc011ecn.1_5'UTR|VNN3_uc010kfu.2_5'UTR|VNN3_uc010kfv.2_RNA|VNN3_uc010kfw.2_5'UTR|VNN3_uc010kfx.2_5'UTR|VNN3_uc010kfy.2_5'UTR|VNN3_uc010kfz.2_5'UTR	NM_078625	NP_523239			SubName: Full=PAGEL-beta;												0	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00242)|GBM - Glioblastoma multiforme(226;0.0168)		GTGATATAATCATAACTAAAA	0.373													8	16					0	0	0.000443	0	0
EYA4	2070	broad.mit.edu	37	6	133767784	133767784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:133767784G>A	uc003qec.3	+	4	558	c.100G>A	c.(100-102)GAC>AAC	p.D34N	EYA4_uc011ecq.1_Missense_Mutation_p.D34N|EYA4_uc011ecr.1_Missense_Mutation_p.D34N|EYA4_uc003qed.3_Missense_Mutation_p.D34N|EYA4_uc003qee.3_Missense_Mutation_p.D34N|EYA4_uc011ecs.1_Missense_Mutation_p.D34N|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	34					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		GGAAATGCAGGACCTAGCAAG	0.393													19	38					0	0	0.002299	0	0
TCF21	6943	broad.mit.edu	37	6	134210670	134210670	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:134210670G>A	uc003qei.3	+	1	411	c.135G>A	c.(133-135)GAG>GAA	p.E45E	uc003qeg.1_5'Flank|TCF21_uc003qej.2_Silent_p.E45E	NM_003206	NP_003197	O43680	TCF21_HUMAN	transcription factor 21	45					branching involved in ureteric bud morphogenesis|mesoderm development|negative regulation of androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus	androgen receptor binding|E-box binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00518)|OV - Ovarian serous cystadenocarcinoma(155;0.00783)		CCAACTGCGAGAATGGGTCTC	0.592													9	18					0	0	0.000443	0	0
PDE7B	27115	broad.mit.edu	37	6	136494966	136494966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:136494966G>A	uc003qgp.2	+	9	1046	c.743G>A	c.(742-744)CGA>CAA	p.R248Q	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.R300Q	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	248	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	CATCACTGGCGATCTACAATT	0.413													24	38					0	0	0.002445	0	0
BCLAF1	9774	broad.mit.edu	37	6	136590675	136590675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:136590675C>T	uc003qgx.1	-	9	2372	c.2119G>A	c.(2119-2121)GAA>AAA	p.E707K	BCLAF1_uc011edb.1_5'Flank|BCLAF1_uc003qgw.1_Missense_Mutation_p.E534K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E705K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E705K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	707					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCTCCCCGTTCTTTACTTCTT	0.388													12	67					0	0	0.003163	0	0
MAP3K5	4217	broad.mit.edu	37	6	136882775	136882775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:136882775C>T	uc003qhc.2	-	28	4244	c.3883G>A	c.(3883-3885)GAA>AAA	p.E1295K	MAP3K5_uc011edj.1_Missense_Mutation_p.E542K	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1295					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		ACAGGCAATTCAGGAATTTCT	0.363													10	24					0	0	0.000673	0	0
MAP3K5	4217	broad.mit.edu	37	6	136901503	136901503	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:136901503C>T	uc003qhc.2	-	25	3814	c.3453G>A	c.(3451-3453)TGG>TGA	p.W1151*	MAP3K5_uc011edj.1_Nonsense_Mutation_p.W398*|MAP3K5_uc011edk.1_Nonsense_Mutation_p.W997*	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1151					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		AGGCAAACATCCAGTGCGGCT	0.398													17	52					0	0	0.000958	0	0
MAP3K5	4217	broad.mit.edu	37	6	136913467	136913467	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:136913467C>T	uc003qhc.2	-	23	3430	c.3069G>A	c.(3067-3069)GAG>GAA	p.E1023E	MAP3K5_uc011edj.1_Silent_p.E270E|MAP3K5_uc011edk.1_Silent_p.E869E	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1023					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		CTTCAAAATTCTCATCTGGAA	0.428													47	78					0	0	0.003610	0	0
MAP3K5	4217	broad.mit.edu	37	6	136923095	136923095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:136923095G>A	uc003qhc.2	-	20	3063	c.2702C>T	c.(2701-2703)CCT>CTT	p.P901L	MAP3K5_uc011edj.1_Missense_Mutation_p.P148L|MAP3K5_uc011edk.1_Missense_Mutation_p.P746L	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	901	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TGGGATCTCAGGGTGGACTTT	0.443													27	34					0	0	0.002096	0	0
IL20RA	53832	broad.mit.edu	37	6	137322750	137322750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:137322750G>A	uc003qhj.2	-	7	2040	c.1607C>T	c.(1606-1608)ACC>ATC	p.T536I	IL20RA_uc011edl.1_Missense_Mutation_p.T487I|IL20RA_uc003qhk.2_Missense_Mutation_p.T425I|IL20RA_uc003qhi.2_Missense_Mutation_p.T268I	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	536	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		CATGAGATAGGTTTCATTTTC	0.502													70	95					0	0	0.003610	0	0
PERP	64065	broad.mit.edu	37	6	138413301	138413301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:138413301C>T	uc003qht.2	-	3	643	c.460G>A	c.(460-462)GGC>AGC	p.G154S		NM_022121	NP_071404	Q96FX8	PERP_HUMAN	PERP, TP53 apoptosis effector	154	Helical; (Potential).				apoptosis|cell adhesion	desmosome|Golgi apparatus|integral to membrane|nucleus					0	Breast(32;0.0799)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000878)|OV - Ovarian serous cystadenocarcinoma(155;0.000997)		CACCCAAAGCCGTAGGCCCAG	0.532													20	27					0	0	0.001882	0	0
PERP	64065	broad.mit.edu	37	6	138417525	138417525	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:138417525G>A	uc003qht.2	-	2	504	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_022121	NP_071404	Q96FX8	PERP_HUMAN	PERP, TP53 apoptosis effector	107					apoptosis|cell adhesion	desmosome|Golgi apparatus|integral to membrane|nucleus					0	Breast(32;0.0799)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000878)|OV - Ovarian serous cystadenocarcinoma(155;0.000997)		TCACTCTCAGGAAGACAAGCA	0.502													19	24					0	0	0.002780	0	0
TXLNB	167838	broad.mit.edu	37	6	139609879	139609879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:139609879G>A	uc011eds.1	-	2	323	c.158C>T	c.(157-159)CCC>CTC	p.P53L		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	53						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		AGAGATATCGGGGTGCACACT	0.532													46	68					0	0	0.003610	0	0
PLAGL1	5325	broad.mit.edu	37	6	144262575	144262575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:144262575G>A	uc003qjv.2	-	3	2644	c.1378C>T	c.(1378-1380)CAT>TAT	p.H460Y	PLAGL1_uc003qjx.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qjy.2_Missense_Mutation_p.H460Y|PLAGL1_uc010khl.2_Missense_Mutation_p.H460Y|PLAGL1_uc010khm.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qjz.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qka.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qkb.2_Missense_Mutation_p.H408Y|PLAGL1_uc003qkc.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qkd.2_Missense_Mutation_p.H408Y|PLAGL1_uc003qke.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qkf.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qkg.2_Missense_Mutation_p.H408Y|PLAGL1_uc003qkh.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qki.2_Missense_Mutation_p.H408Y|PLAGL1_uc003qkj.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qkk.2_Missense_Mutation_p.H408Y|PLAGL1_uc003qkl.2_Missense_Mutation_p.H408Y|PLAGL1_uc003qkm.2_Missense_Mutation_p.H460Y|PLAGL1_uc010khn.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qkn.2_Missense_Mutation_p.H408Y|PLAGL1_uc003qko.2_Missense_Mutation_p.H460Y|PLAGL1_uc003qkp.2_Missense_Mutation_p.H408Y|PLAGL1_uc003qjw.2_Missense_Mutation_p.H408Y	NM_002656	NP_002647	Q9UM63	PLAL1_HUMAN	pleiomorphic adenoma gene-like 1 isoform 1	460					cell cycle arrest|induction of apoptosis|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.74e-07)|GBM - Glioblastoma multiforme(68;0.0885)		CTGAATGCATGATGGAAATGA	0.443													120	175					0	0	0.003610	0	0
PLAGL1	5325	broad.mit.edu	37	6	144263446	144263446	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:144263446C>T	uc003qjv.2	-	3	1773	c.507G>A	c.(505-507)AAG>AAA	p.K169K	PLAGL1_uc003qjx.2_Silent_p.K169K|PLAGL1_uc003qjy.2_Silent_p.K169K|PLAGL1_uc010khl.2_Silent_p.K169K|PLAGL1_uc010khm.2_Silent_p.K169K|PLAGL1_uc003qjz.2_Silent_p.K169K|PLAGL1_uc003qka.2_Silent_p.K169K|PLAGL1_uc003qkb.2_Silent_p.K117K|PLAGL1_uc003qkc.2_Silent_p.K169K|PLAGL1_uc003qkd.2_Silent_p.K117K|PLAGL1_uc003qke.2_Silent_p.K169K|PLAGL1_uc003qkf.2_Silent_p.K169K|PLAGL1_uc003qkg.2_Silent_p.K117K|PLAGL1_uc003qkh.2_Silent_p.K169K|PLAGL1_uc003qki.2_Silent_p.K117K|PLAGL1_uc003qkj.2_Silent_p.K169K|PLAGL1_uc003qkk.2_Silent_p.K117K|PLAGL1_uc003qkl.2_Silent_p.K117K|PLAGL1_uc003qkm.2_Silent_p.K169K|PLAGL1_uc010khn.2_Silent_p.K169K|PLAGL1_uc003qkn.2_Silent_p.K117K|PLAGL1_uc003qko.2_Silent_p.K169K|PLAGL1_uc003qkp.2_Silent_p.K117K|PLAGL1_uc003qjw.2_Silent_p.K117K	NM_002656	NP_002647	Q9UM63	PLAL1_HUMAN	pleiomorphic adenoma gene-like 1 isoform 1	169	C2H2-type 6.				cell cycle arrest|induction of apoptosis|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.74e-07)|GBM - Glioblastoma multiforme(68;0.0885)		GTCGCACATCCTTCCGGGTGT	0.572											OREG0017707	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	135	181					0	0	0.003610	0	0
UTRN	7402	broad.mit.edu	37	6	144774947	144774947	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:144774947C>T	uc003qkt.2	+	18	2318	c.2226C>T	c.(2224-2226)ATC>ATT	p.I742I	UTRN_uc010khq.1_Silent_p.I742I	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	742	Interaction with SYNM.|Spectrin 5.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GAGAAAGAATCCCCAGAGCAG	0.348													35	53					0	0	0.001287	0	0
FBXO30	84085	broad.mit.edu	37	6	146126358	146126358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:146126358G>A	uc003qla.2	-	2	1383	c.1184C>T	c.(1183-1185)TCA>TTA	p.S395L	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	395	F-box.						ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		AGACCAACATGAATTAGAAAG	0.388													58	79					0	0	0.003610	0	0
RAET1K	646024	broad.mit.edu	37	6	150322243	150322243	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:150322243C>T	uc003qnq.2	-	2		c.634G>A				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						ACAAGACATCCTGGCCTGCAG	0.522													3	15					0	0	0.000248	0	0
RAET1K	646024	broad.mit.edu	37	6	150322493	150322493	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:150322493G>A	uc003qnq.2	-	2		c.384C>T				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						TTACCGATGGGTATTACATTC	0.408													6	8					0	0	0.001984	0	0
IYD	389434	broad.mit.edu	37	6	150690271	150690271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:150690271G>A	uc003qnu.1	+	1	244	c.104G>A	c.(103-105)AGA>AAA	p.R35K	IYD_uc003qnv.1_Missense_Mutation_p.R35K|IYD_uc003qnw.1_RNA|IYD_uc003qnx.1_Missense_Mutation_p.R35K|IYD_uc010kik.1_5'UTR	NM_203395	NP_981932	Q6PHW0	IYD1_HUMAN	iodotyrosine dehalogenase 1 isoform 2	35	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	integral to membrane|plasma membrane				ovary(2)	2		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;4.16e-12)		GGGGAGCCTAGAACCAGGGCC	0.488													37	48					0	0	0.004878	0	0
SYNE1	23345	broad.mit.edu	37	6	152523006	152523006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:152523006G>A	uc010kiw.2	-	127	23700	c.23098C>T	c.(23098-23100)CTC>TTC	p.L7700F	SYNE1_uc010kiv.2_Missense_Mutation_p.L2224F|SYNE1_uc003qos.3_Missense_Mutation_p.L2224F|SYNE1_uc003qot.3_Missense_Mutation_p.L7629F|SYNE1_uc003qou.3_Missense_Mutation_p.L7700F|SYNE1_uc003qor.3_Missense_Mutation_p.L600F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7700	Cytoplasmic (Potential).|Spectrin 26.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGATCCGGGAGAGACTGCGAA	0.433										HNSCC(10;0.0054)			26	61					0	0	0.004656	0	0
SYNE1	23345	broad.mit.edu	37	6	152532666	152532666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:152532666C>T	uc010kiw.2	-	124	23154	c.22552G>A	c.(22552-22554)GGG>AGG	p.G7518R	SYNE1_uc010kiv.2_Missense_Mutation_p.G2042R|SYNE1_uc003qos.3_Missense_Mutation_p.G2042R|SYNE1_uc003qot.3_Missense_Mutation_p.G7447R|SYNE1_uc003qou.3_Missense_Mutation_p.G7518R|SYNE1_uc003qor.3_Missense_Mutation_p.G418R	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7518	Cytoplasmic (Potential).|Spectrin 25.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGACGTTGCCCATCAATAATG	0.318										HNSCC(10;0.0054)			18	40					0	0	0.002299	0	0
SYNE1	23345	broad.mit.edu	37	6	152651277	152651277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:152651277G>A	uc010kiw.2	-	78	15145	c.14543C>T	c.(14542-14544)CCC>CTC	p.P4848L	SYNE1_uc003qot.3_Missense_Mutation_p.P4777L|SYNE1_uc003qou.3_Missense_Mutation_p.P4848L|SYNE1_uc010kiz.2_Missense_Mutation_p.P603L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4848	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATAAGCCAAGGGGTCAAGGTG	0.493										HNSCC(10;0.0054)			13	20					0	0	0.001368	0	0
SYNE1	23345	broad.mit.edu	37	6	152711425	152711425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:152711425G>A	uc010kiw.2	-	53	8769	c.8167C>T	c.(8167-8169)CAC>TAC	p.H2723Y	SYNE1_uc003qot.3_Missense_Mutation_p.H2730Y|SYNE1_uc003qou.3_Missense_Mutation_p.H2723Y|SYNE1_uc010kjb.1_Missense_Mutation_p.H2706Y	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2723	Cytoplasmic (Potential).|HAT 5.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTTTGAGCGTGGACGGAGGAG	0.453										HNSCC(10;0.0054)			25	29					0	0	0.001271	0	0
SYNE1	23345	broad.mit.edu	37	6	152718116	152718116	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:152718116C>T	uc010kiw.2	-	50	7953	c.7351_splice	c.e50-1	p.N2451_splice	SYNE1_uc003qot.3_Splice_Site_p.N2458_splice|SYNE1_uc003qou.3_Splice_Site_p.N2451_splice|SYNE1_uc010kjb.1_Splice_Site_p.N2434_splice	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1						cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCAAAATGTTCTGTTTCAGGA	0.383										HNSCC(10;0.0054)			27	34					0	0	0.001512	0	0
SYNE1	23345	broad.mit.edu	37	6	152771814	152771814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:152771814C>T	uc010kiw.2	-	27	3943	c.3341G>A	c.(3340-3342)AGC>AAC	p.S1114N	SYNE1_uc003qot.3_Missense_Mutation_p.S1121N|SYNE1_uc003qou.3_Missense_Mutation_p.S1114N|SYNE1_uc010kjb.1_Missense_Mutation_p.S1097N|SYNE1_uc003qow.2_Missense_Mutation_p.S409N|SYNE1_uc003qox.1_Missense_Mutation_p.S630N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1114	HAT 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCTGTAGGTGCTGTCAATGGC	0.522										HNSCC(10;0.0054)			67	81					0	0	0.003610	0	0
MYCT1	80177	broad.mit.edu	37	6	153043113	153043113	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:153043113C>T	uc003qpd.3	+	2	441	c.433C>T	c.(433-435)CAG>TAG	p.Q145*	MYCT1_uc010kjc.1_Nonsense_Mutation_p.Q97*|MYCT1_uc003qpc.3_Nonsense_Mutation_p.Q145*	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	145						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		TCTCACCTTCCAGCGACAAGC	0.493													28	67					0	0	0.002836	0	0
VIP	7432	broad.mit.edu	37	6	153073395	153073395	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:153073395T>C	uc003qpe.2	+	2	255	c.83T>C	c.(82-84)CTT>CCT	p.L28P	VIP_uc003qpf.2_Missense_Mutation_p.L28P|VIP_uc010kjd.2_Missense_Mutation_p.L28P	NM_003381	NP_003372	P01282	VIP_HUMAN	vasoactive intestinal peptide isoform 1	28					body fluid secretion|G-protein coupled receptor protein signaling pathway|positive regulation of cell proliferation	extracellular region	neuropeptide hormone activity				0		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;4.5e-11)|BRCA - Breast invasive adenocarcinoma(81;0.144)		GCATGGCCTCTTTACAGGGCA	0.453													20	34					0	0	0.003954	0	0
CNKSR3	154043	broad.mit.edu	37	6	154727717	154727717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:154727717G>A	uc003qpy.2	-	13	1944	c.1439C>T	c.(1438-1440)CCC>CTC	p.P480L		NM_173515	NP_775786	Q6P9H4	CNKR3_HUMAN	CNKSR family member 3	480	DUF1170.				negative regulation of ERK1 and ERK2 cascade|negative regulation of peptidyl-serine phosphorylation|positive regulation of sodium ion transport	cytoplasm|membrane				ovary(2)|breast(1)|skin(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;5.03e-11)|BRCA - Breast invasive adenocarcinoma(81;0.00627)		CCGGTATGGGGGAGAGGAGCT	0.552													12	20					0	0	0.001368	0	0
NOX3	50508	broad.mit.edu	37	6	155757582	155757582	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:155757582G>A	uc003qqm.2	-	7	871	c.768C>T	c.(766-768)CCC>CCT	p.P256P		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	256	Extracellular (Potential).|Ferric oxidoreductase.						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		ATTGAGGCACGGGGCATTGGG	0.463													28	49					0	0	0.002445	0	0
SNX9	51429	broad.mit.edu	37	6	158288663	158288663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:158288663C>T	uc003qqv.1	+	2	270	c.97C>T	c.(97-99)CCG>TCG	p.P33S		NM_016224	NP_057308	Q9Y5X1	SNX9_HUMAN	sorting nexin 9	33	SH3.				cell communication|intracellular protein transport|lipid tube assembly|positive regulation of GTPase activity|positive regulation of protein oligomerization|receptor-mediated endocytosis	clathrin-coated vesicle|cytoplasmic vesicle membrane|extrinsic to internal side of plasma membrane|ruffle|trans-Golgi network	1-phosphatidylinositol binding|protein homodimerization activity|ubiquitin protein ligase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)|Prostate(117;0.167)		OV - Ovarian serous cystadenocarcinoma(65;8.06e-18)|BRCA - Breast invasive adenocarcinoma(81;4.48e-05)		AATCACAAATCCGGTAAGAGA	0.408													13	17					0	0	0.001855	0	0
FNDC1	84624	broad.mit.edu	37	6	159687136	159687136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:159687136C>T	uc010kjv.2	+	21	5505	c.5305C>T	c.(5305-5307)CCA>TCA	p.P1769S		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1769						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TATCTGGATCCCATTCGCTTT	0.488													15	17					0	0	0.000743	0	0
ACAT2	39	broad.mit.edu	37	6	160188084	160188084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:160188084C>T	uc010kjy.2	+	3	369	c.238C>T	c.(238-240)CCC>TCC	p.P80S	ACAT2_uc011efw.1_Missense_Mutation_p.P109S	NM_005891	NP_005882	Q9BWD1	THIC_HUMAN	acetyl-Coenzyme A acetyltransferase 2	80						mitochondrion|nucleolus	acetyl-CoA C-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.51e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		TGCAGGAATTCCCTACTCTGT	0.498													34	43					0	0	0.001951	0	0
SLC22A2	6582	broad.mit.edu	37	6	160679502	160679502	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:160679502C>T	uc003qtf.2	-	1	458	c.288G>A	c.(286-288)TGG>TGA	p.W96*	SLC22A2_uc003qte.1_Nonsense_Mutation_p.W96*|SLC22A2_uc003qth.1_Nonsense_Mutation_p.W96*	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	96	Extracellular (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		TGCTCTGGTTCCAGTCCACCT	0.677													24	35					0	0	0.005443	0	0
LPA	4018	broad.mit.edu	37	6	161006189	161006189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:161006189C>T	uc003qtl.2	-	27	4298	c.4178G>A	c.(4177-4179)GGA>GAA	p.G1393E		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3901	Kringle 35.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ATAACTCTGTCCATCACCTCG	0.463													49	89					0	0	0.003610	0	0
LPA	4018	broad.mit.edu	37	6	161071386	161071386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:161071386C>T	uc003qtl.2	-	3	313	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	2573	Kringle 23.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GGGTAGTTTTCTGTGGTCCTA	0.418													78	93					0	0	0.003610	0	0
PARK2	5071	broad.mit.edu	37	6	162622263	162622263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:162622263C>T	uc003qtx.3	-	4	568	c.434G>A	c.(433-435)AGC>AAC	p.S145N	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_5'UTR|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Missense_Mutation_p.S145N|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Missense_Mutation_p.S145N	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	145					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		CACATAAAAGCTGTTGTAGAT	0.458													22	35					0	0	0.002299	0	0
C6orf118	168090	broad.mit.edu	37	6	165715313	165715313	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:165715313C>T	uc003qum.3	-	2	534	c.498G>A	c.(496-498)CGG>CGA	p.R166R	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	166											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CAGGAGGGCCCCGTCCAGGAG	0.632													18	24					0	0	0.001216	0	0
C6orf118	168090	broad.mit.edu	37	6	165715586	165715586	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:165715586C>T	uc003qum.3	-	2	261	c.225G>A	c.(223-225)ACG>ACA	p.T75T	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	75											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		GCTGTAAGATCGTCTCCGGAG	0.617													27	46					0	0	0.001271	0	0
UNC93A	54346	broad.mit.edu	37	6	167705012	167705012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:167705012C>T	uc003qvq.2	+	1	210	c.35C>T	c.(34-36)TCC>TTC	p.S12F	UNC93A_uc003qvr.2_Missense_Mutation_p.S12F	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	12	Helical; (Potential).					integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CTTGTGGTTTCCTTTGGGTTC	0.453													31	46					0	0	0.003271	0	0
FRMD1	79981	broad.mit.edu	37	6	168461500	168461500	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:168461500T>A	uc003qwo.3	-	9	1348	c.1283A>T	c.(1282-1284)GAG>GTG	p.E428V	FRMD1_uc003qwm.3_Missense_Mutation_p.E222V|FRMD1_uc011egs.1_Missense_Mutation_p.E199V|FRMD1_uc011egt.1_Missense_Mutation_p.E363V|FRMD1_uc003qwn.3_Missense_Mutation_p.E360V	NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	428						cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		GGAGGACGGCTCCTTCTCATG	0.637													15	12					0	0	0.003163	0	0
THBS2	7058	broad.mit.edu	37	6	169649039	169649039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:169649039C>T	uc003qwt.2	-	4	330	c.82G>A	c.(82-84)GAC>AAC	p.D28N		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	28	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CTGAAAAGGTCGAAGGTCGTG	0.612													8	17					0	0	0.004482	0	0
C6orf70	55780	broad.mit.edu	37	6	170173476	170173476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr6:170173476C>T	uc003qxg.1	+	13	1328	c.1295C>T	c.(1294-1296)CCG>CTG	p.P432L	C6orf70_uc011ehb.1_Missense_Mutation_p.P306L|C6orf70_uc003qxh.1_Missense_Mutation_p.P432L|C6orf70_uc010kky.1_Missense_Mutation_p.P306L|C6orf70_uc003qxi.1_Missense_Mutation_p.P80L	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	432						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		CGCTGTCATCCGGTTTTTCAG	0.463													21	34					0	0	0.003330	0	0
PDGFA	5154	broad.mit.edu	37	7	550580	550580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:550580G>A	uc003sir.2	-	4	1162	c.319C>T	c.(319-321)CGG>TGG	p.R107W	PDGFA_uc003sis.2_Missense_Mutation_p.R107W|PDGFA_uc003sit.1_Missense_Mutation_p.R121W	NM_002607	NP_002598	P04085	PDGFA_HUMAN	platelet-derived growth factor alpha isoform 1	107					actin cytoskeleton organization|angiogenesis|cell projection assembly|embryo development|hair follicle development|lung alveolus development|negative chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|organ morphogenesis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of DNA replication|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of MAP kinase activity|positive regulation of mesenchymal cell proliferation|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein kinase B signaling cascade|regulation of actin cytoskeleton organization|regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling|regulation of peptidyl-tyrosine phosphorylation|regulation of smooth muscle cell migration|skin development	cell surface|endoplasmic reticulum lumen|extracellular space|Golgi membrane|microvillus|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity				0		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|Epithelial(4;1.1e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.7e-17)|all cancers(6;4.89e-15)		ACCTGACTCCGAGGAATCTCG	0.642													8	11					0	0	0.000443	0	0
INTS1	26173	broad.mit.edu	37	7	1516266	1516266	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:1516266G>A	uc003skn.2	-	37	5192	c.5091C>T	c.(5089-5091)TTC>TTT	p.F1697F	INTS1_uc003skm.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1697					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		AGGCCCAGAGGAAGTCCAGAG	0.662													12	41					0	0	0.002450	0	0
CARD11	84433	broad.mit.edu	37	7	2963988	2963988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:2963988C>T	uc003smv.2	-	15	2223	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	607					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GAGTAGCGTTCGTGACTGTCA	0.642			Mis		DLBCL								11	24					0	0	0.001855	0	0
FOXK1	221937	broad.mit.edu	37	7	4780636	4780636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:4780636C>T	uc003snc.1	+	2	738	c.728C>T	c.(727-729)TCC>TTC	p.S243F	FOXK1_uc003sna.1_Missense_Mutation_p.S80F|FOXK1_uc003snb.1_Missense_Mutation_p.S243F	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	243					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		CCCGTCCCCTCCCCGACGGGC	0.701													7	13					0	0	0.003080	0	0
RADIL	55698	broad.mit.edu	37	7	4845237	4845237	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:4845237C>T	uc003snj.1	-	10	2423	c.2250G>A	c.(2248-2250)TGG>TGA	p.W750*	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Nonsense_Mutation_p.W255*|RADIL_uc011jwc.1_Nonsense_Mutation_p.W510*|RADIL_uc011jwd.1_RNA|RADIL_uc003snh.1_5'Flank	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	750	Dilute.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		CCCCTGGCTCCCAGGTGCTCA	0.711													13	19					0	0	0.001368	0	0
SLC29A4	222962	broad.mit.edu	37	7	5340250	5340251	+	Silent	DNP	CC	TT	TT	rs141584802		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:5340250_5340251CC>TT	uc003sod.2	+	10	1568_1569	c.1407_1408CC>TT	c.(1405-1410)ATCCTG>ATTTTG	p.469_470IL>IL	SLC29A4_uc003soc.2_Silent_p.469_470IL>IL|SLC29A4_uc003soe.2_Silent_p.455_456IL>IL|SLC29A4_uc010ksw.2_Intron	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	469_470	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		TGCCCATGATCCTGGCGGCAGG	0.703													21	35					0	0	0.004672	0	0
C7orf70	84792	broad.mit.edu	37	7	6370637	6370637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:6370637G>A	uc003spu.2	-	2	617	c.149C>T	c.(148-150)CCT>CTT	p.P50L		NM_001037163	NP_001032240	Q7Z4H9	SIPAR_HUMAN	hypothetical protein LOC84792	50						nucleus					0						ATCAACCACAGGCTTATTCAT	0.547													29	40					0	0	0.002445	0	0
RSPH10B2	728194	broad.mit.edu	37	7	6820488	6820488	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:6820488G>A	uc003sqw.1	+	14	1849	c.1578G>A	c.(1576-1578)GAG>GAA	p.E526E	RSPH10B2_uc010ktk.1_Silent_p.E526E|RSPH10B2_uc011jxc.1_Intron|RSPH10B2_uc010ktl.1_Intron	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	526										ovary(1)|pancreas(1)|skin(1)	3						TGATGACCGAGAACATTCGTC	0.303													28	115					0	0	0.001287	0	0
RPA3	6119	broad.mit.edu	37	7	7676670	7676670	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:7676670G>A	uc003sri.2	-	8	1499	c.327C>T	c.(325-327)TTC>TTT	p.F109F	RPA3_uc003srh.2_Silent_p.F70F	NM_002947	NP_002938	P35244	RFA3_HUMAN	replication protein A3, 14kDa	109					cell cycle checkpoint|DNA recombinase assembly|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	cytoplasm|DNA replication factor A complex|nucleoplasm	protein binding|single-stranded DNA binding			large_intestine(1)	1		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.202)		AAAACTGAGGGAAGTCATGGA	0.318								Direct_reversal_of_damage|NER					72	84					0	0	0.003610	0	0
DGKB	1607	broad.mit.edu	37	7	14613861	14613861	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:14613861G>A	uc003ssz.2	-	19	1936	c.1749C>T	c.(1747-1749)ATC>ATT	p.I583I	DGKB_uc011jxt.1_Silent_p.I564I|DGKB_uc003sta.2_Silent_p.I583I|DGKB_uc011jxu.1_Silent_p.I582I	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	583					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	AGTAATTATTGATGATACTGT	0.353													82	147					0	0	0.003610	0	0
DGKB	1607	broad.mit.edu	37	7	14647068	14647068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:14647068G>A	uc003ssz.2	-	16	1614	c.1427C>T	c.(1426-1428)CCA>CTA	p.P476L	DGKB_uc011jxt.1_Missense_Mutation_p.P457L|DGKB_uc003sta.2_Missense_Mutation_p.P476L|DGKB_uc011jxu.1_Missense_Mutation_p.P475L	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	476	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	CCCTGGCATTGGTCCATTTCC	0.299													21	41					0	0	0.003330	0	0
AHR	196	broad.mit.edu	37	7	17378725	17378725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:17378725C>T	uc011jxz.1	+	10	1889	c.1276C>T	c.(1276-1278)CCC>TCC	p.P426S	AHR_uc003stt.3_RNA	NM_001621	NP_001612	P35869	AHR_HUMAN	aryl hydrocarbon receptor precursor	426					apoptosis|blood vessel development|cell cycle|regulation of B cell proliferation|response to stress|transcription from RNA polymerase II promoter|xenobiotic metabolic process	cytosolic aryl hydrocarbon receptor complex|transcription factor complex	Hsp90 protein binding|ligand-dependent nuclear receptor activity|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			urinary_tract(1)|kidney(1)|pancreas(1)	3	Lung NSC(10;0.0392)|all_lung(11;0.0754)					CATAATGGATCCCTTACCACT	0.448													45	72					0	0	0.003610	0	0
SNX13	23161	broad.mit.edu	37	7	17908089	17908089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:17908089G>A	uc003stw.1	-	9	991	c.778C>T	c.(778-780)CTT>TTT	p.L260F	SNX13_uc003stv.2_Missense_Mutation_p.L260F|SNX13_uc010kuc.2_Missense_Mutation_p.L57F|SNX13_uc003stx.1_Missense_Mutation_p.L180F			Q9Y5W8	SNX13_HUMAN	SubName: Full=Putative uncharacterized protein SNX13; SubName: Full=Sorting nexin 13, isoform CRA_g;	260	PXA.				cell communication|intracellular protein transport|negative regulation of signal transduction|positive regulation of GTPase activity	early endosome membrane	phosphatidylinositol binding|signal transducer activity			central_nervous_system(2)|kidney(1)	3	Lung NSC(10;0.0261)|all_lung(11;0.0521)					ATTAATGGAAGAAGAATTCCT	0.274													22	30					0	0	0.002780	0	0
HDAC9	9734	broad.mit.edu	37	7	18875176	18875176	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:18875176G>A	uc003suh.2	+	19	2585	c.2544G>A	c.(2542-2544)GGG>GGA	p.G848G	HDAC9_uc003sue.2_Silent_p.G848G|HDAC9_uc011jyd.1_Silent_p.G848G|HDAC9_uc003sui.2_Silent_p.G851G|HDAC9_uc003suj.2_Silent_p.G807G|HDAC9_uc003suk.2_Silent_p.G96G	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	848	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	ATGATGAAGGGAACTTTTTCC	0.448													18	25					0	0	0.004990	0	0
HDAC9	9734	broad.mit.edu	37	7	19015472	19015472	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:19015472C>T	uc003sui.2	+	24	3107	c.3066C>T	c.(3064-3066)GGC>GGT	p.G1022G	HDAC9_uc003sue.2_Silent_p.G1019G|HDAC9_uc003suj.2_Silent_p.G978G|HDAC9_uc003suk.2_Silent_p.G267G	NM_178425	NP_848512	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 5	Error:Variant_position_missing_in_Q9UKV0_after_alignment					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TGCCAAGGGGCTGTGCTCTGG	0.483													14	33					0	0	0.001855	0	0
ABCB5	340273	broad.mit.edu	37	7	20725318	20725319	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:20725318_20725319GG>AA	uc003suw.3	+	7	1081	c.535_splice	c.e7-1	p.D179_splice	ABCB5_uc010kuh.2_Splice_Site_p.D624_splice	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5						regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CTTCCTGTAAGGATATTAAAAA	0.342													12	20					0	0	0.004672	0	0
STK31	56164	broad.mit.edu	37	7	23776684	23776684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:23776684C>T	uc003sws.3	+	8	1071	c.1004C>T	c.(1003-1005)GCC>GTC	p.A335V	STK31_uc003swt.3_Missense_Mutation_p.A312V|STK31_uc011jze.1_Missense_Mutation_p.A335V|STK31_uc010kuq.2_Missense_Mutation_p.A312V	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	335	Potential.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GAGCAGATTGCCCAGGAGCTG	0.403													8	18					0	0	0.003080	0	0
LOC402644	402644	broad.mit.edu	37	7	28319295	28319295	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:28319295G>A	uc010kuz.1	-	1	24	c.24C>T	c.(22-24)TTC>TTT	p.F8F		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						CAGCAACGTCGAAGAACATGG	0.502													7	10					0	0	0.003080	0	0
CREB5	9586	broad.mit.edu	37	7	28843904	28843904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:28843904C>T	uc003szq.2	+	8	1181	c.791C>T	c.(790-792)TCC>TTC	p.S264F	CREB5_uc003szo.2_Missense_Mutation_p.S231F|CREB5_uc003szr.2_Missense_Mutation_p.S257F|CREB5_uc003szs.2_Missense_Mutation_p.S125F	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	264					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						ATGATGGGCTCCCGGCAGGAC	0.313													112	156					0	0	0.003610	0	0
CHN2	1124	broad.mit.edu	37	7	29440302	29440302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:29440302C>T	uc003szz.2	+	6	871	c.434C>T	c.(433-435)TCA>TTA	p.S145L	CHN2_uc011jzs.1_Missense_Mutation_p.S220L|CHN2_uc010kva.2_Intron|CHN2_uc010kvb.2_Intron|CHN2_uc010kvc.2_Missense_Mutation_p.S110L|CHN2_uc011jzt.1_Missense_Mutation_p.S158L|CHN2_uc010kvd.2_Intron|CHN2_uc011jzu.1_Missense_Mutation_p.S130L	NM_004067	NP_004058	P52757	CHIO_HUMAN	beta chimerin isoform 2	145					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|membrane	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)	2						GAGTACATTTCAAAAATGACA	0.408													19	27					0	0	0.001216	0	0
GARS	2617	broad.mit.edu	37	7	30661043	30661043	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:30661043C>T	uc003tbm.2	+	11	1751	c.1394C>T	c.(1393-1395)TCC>TTC	p.S465F		NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	465					cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	GCTGATCGTTCCTGTTATGAC	0.378													90	143					0	0	0.003610	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31120239	31120239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:31120239G>A	uc003tca.1	+	5	500	c.277G>A	c.(277-279)GAA>AAA	p.E93K	ADCYAP1R1_uc003tcb.1_Intron|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.E93K|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.E93K|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.E93K	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	93	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CTGGGAGACCGAAACCATTGG	0.562													15	21					0	0	0.001216	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31123826	31123826	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:31123826C>T	uc003tca.1	+	7	622	c.399C>T	c.(397-399)GCC>GCT	p.A133A	ADCYAP1R1_uc003tcb.1_Silent_p.A112A|ADCYAP1R1_uc003tcc.1_Silent_p.A133A|ADCYAP1R1_uc003tcd.1_Silent_p.A133A|ADCYAP1R1_uc003tce.1_Silent_p.A133A|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	133	Important for ligand binding and specificity.|Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						ACTTTGATGCCTGTGGGTTTG	0.547													42	65					0	0	0.003610	0	0
CCDC129	223075	broad.mit.edu	37	7	31617667	31617667	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:31617667G>A	uc003tcj.1	+	8	1782	c.789G>A	c.(787-789)CAG>CAA	p.Q263Q	CCDC129_uc011kad.1_Silent_p.Q273Q|CCDC129_uc003tci.1_Intron|CCDC129_uc011kae.1_Silent_p.Q289Q|CCDC129_uc003tck.1_Silent_p.Q171Q	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	263											0						CTTCCAAACAGAACATCAGGC	0.468													10	21					0	0	0.000978	0	0
PDE1C	5137	broad.mit.edu	37	7	31855591	31855591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:31855591G>A	uc003tcm.1	-	15	2229	c.1760C>T	c.(1759-1761)CCT>CTT	p.P587L	PDE1C_uc003tcn.1_Missense_Mutation_p.P587L|PDE1C_uc003tco.1_Missense_Mutation_p.P647L|PDE1C_uc003tcr.2_Missense_Mutation_p.P587L|PDE1C_uc003tcs.2_Missense_Mutation_p.P587L	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	587					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TTTCCCACGAGGGTTGTCACT	0.473													57	128					0	0	0.003610	0	0
PDE1C	5137	broad.mit.edu	37	7	32109931	32109931	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:32109931C>T	uc003tcm.1	-	1	544	c.75G>A	c.(73-75)GAG>GAA	p.E25E	PDE1C_uc003tcn.1_Silent_p.E25E|PDE1C_uc003tco.1_Intron|PDE1C_uc003tcr.2_Silent_p.E25E|PDE1C_uc003tcs.2_Silent_p.E25E	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	25					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GCCAGATTTTCTCGATCTGTT	0.517													37	55					0	0	0.002522	0	0
BBS9	27241	broad.mit.edu	37	7	33296886	33296886	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:33296886C>T	uc003tdn.1	+	6	994	c.481C>T	c.(481-483)CTG>TTG	p.L161L	BBS9_uc003tdo.1_Silent_p.L161L|BBS9_uc003tdp.1_Silent_p.L161L|BBS9_uc003tdq.1_Silent_p.L161L|BBS9_uc010kwn.1_RNA|BBS9_uc011kan.1_Silent_p.L161L|BBS9_uc011kao.1_Silent_p.L39L	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	161					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			GGATGGGATGCTGATGGTATT	0.363									Bardet-Biedl_syndrome				21	26					0	0	0.005443	0	0
BMPER	168667	broad.mit.edu	37	7	34118759	34118759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:34118759G>A	uc011kap.1	+	12	1483	c.1369G>A	c.(1369-1371)GAC>AAC	p.D457N		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	457	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CTTCCACATCGACCTGGATGG	0.652													15	31					0	0	0.003163	0	0
TBX20	57057	broad.mit.edu	37	7	35242131	35242131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:35242131G>A	uc011kas.1	-	8	1266	c.1255C>T	c.(1255-1257)CCG>TCG	p.P419S		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	419						nucleus	DNA binding			central_nervous_system(1)	1						TGGTATCGCGGCATGTGGAAT	0.522													11	4					0	0	0.000673	0	0
TBX20	57057	broad.mit.edu	37	7	35280553	35280553	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:35280553A>G	uc011kas.1	-	5	762	c.751T>C	c.(751-753)TTT>CTT	p.F251L		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	251	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						AAAGTTCTAAATTCTTCAGAC	0.403													15	28					0	0	0.003163	0	0
HERPUD2	64224	broad.mit.edu	37	7	35674035	35674035	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:35674035G>A	uc003tet.2	-	7	1751	c.946C>T	c.(946-948)CAA>TAA	p.Q316*	HERPUD2_uc003tes.3_Nonsense_Mutation_p.Q316*	NM_022373	NP_071768	Q9BSE4	HERP2_HUMAN	HERPUD family member 2	316	Helical; (Potential).				response to unfolded protein	integral to membrane				ovary(3)	3						CATCCAGCTTGGTGTCTGTTC	0.343													26	29					0	0	0.001271	0	0
AOAH	313	broad.mit.edu	37	7	36616230	36616230	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:36616230C>T	uc003tfh.3	-	13	1372	c.971G>A	c.(970-972)TGG>TAG	p.W324*	AOAH_uc010kxf.2_Nonsense_Mutation_p.W324*|AOAH_uc011kba.1_Nonsense_Mutation_p.W292*	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	324					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GTTTCTTTTCCATAAGCGAAG	0.308													41	101					0	0	0.003610	0	0
AOAH	313	broad.mit.edu	37	7	36677516	36677516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:36677516C>T	uc003tfh.3	-	5	792	c.391G>A	c.(391-393)GAG>AAG	p.E131K	AOAH_uc010kxf.2_Missense_Mutation_p.E131K|AOAH_uc011kba.1_Missense_Mutation_p.E99K	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	131					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						TTCCATGTCTCCTATAAAAAC	0.348													12	29					0	0	0.000978	0	0
TXNDC3	51314	broad.mit.edu	37	7	37901710	37901710	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:37901710G>A	uc003tfn.2	+	7	723	c.351G>A	c.(349-351)GAG>GAA	p.E117E		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	117	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TCGATGAGGAGAGAAAAATTG	0.338									Kartagener_syndrome				21	28					0	0	0.001523	0	0
TXNDC3	51314	broad.mit.edu	37	7	37907457	37907457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:37907457G>A	uc003tfn.2	+	11	1147	c.775G>A	c.(775-777)GAA>AAA	p.E259K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	259					cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						ACCTGAGGTCGAAGCCCAGGT	0.448									Kartagener_syndrome				11	13					0	0	0.000978	0	0
TXNDC3	51314	broad.mit.edu	37	7	37924006	37924006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:37924006G>A	uc003tfn.2	+	13	1468	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	366	NDK 2.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CAAGGAATATGAAAATGAAGA	0.308									Kartagener_syndrome				28	44					0	0	0.001271	0	0
SFRP4	6424	broad.mit.edu	37	7	37951821	37951821	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:37951821G>A	uc003tfo.3	-	4	1077	c.691C>T	c.(691-693)CCT>TCT	p.P231S		NM_003014	NP_003005	Q6FHJ7	SFRP4_HUMAN	secreted frizzled-related  protein 4 precursor	231	NTR.				brain development|cell differentiation|decidualization|embryo development|epithelium development|gonad development|mammary gland involution|menstrual cycle phase|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell proliferation|negative regulation of JNK cascade|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of sodium-dependent phosphate transport|phosphate ion homeostasis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epidermal cell differentiation|positive regulation of gene expression|positive regulation of receptor internalization|vasculature development|Wnt receptor signaling pathway	cell surface|cytoplasm|extracellular space|nucleus	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1						TGAGTTCGAGGGATGGGTGAT	0.473													31	58					0	0	0.002445	0	0
AMPH	273	broad.mit.edu	37	7	38534094	38534094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:38534094G>A	uc003tgu.2	-	4	308	c.239C>T	c.(238-240)TCG>TTG	p.S80L	AMPH_uc003tgv.2_Missense_Mutation_p.S80L	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	80	BAR.|Potential.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						TTCATGCAGCGACTCTGTGAG	0.532													58	56					0	0	0.003610	0	0
VPS41	27072	broad.mit.edu	37	7	38857459	38857459	+	Silent	SNP	G	A	A	rs150900239		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:38857459G>A	uc003tgy.2	-	7	434	c.408C>T	c.(406-408)TTC>TTT	p.F136F	VPS41_uc003tgz.2_Silent_p.F111F|VPS41_uc010kxn.2_Silent_p.F136F	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	136					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding	p.F136F(1)		skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						TGGATCTCACGAAATGTGGGT	0.468													30	60					0	0	0.002096	0	0
POU6F2	11281	broad.mit.edu	37	7	39247114	39247114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:39247114G>A	uc003thb.1	+	4	448	c.406G>A	c.(406-408)GGA>AGA	p.G136R	POU6F2_uc010kxo.2_Missense_Mutation_p.G128R	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	136					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						AGGCCAGCAAGGACTGGTTCT	0.597													31	48					0	0	0.001271	0	0
POU6F2	11281	broad.mit.edu	37	7	39472834	39472834	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:39472834G>A	uc003thb.1	+	7	1227	c.1185G>A	c.(1183-1185)GTG>GTA	p.V395V		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	395	Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						TCCTGCCCGTGATCAACACCC	0.602													13	19					0	0	0.000743	0	0
POU6F2	11281	broad.mit.edu	37	7	39503854	39503854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:39503854G>A	uc003thb.1	+	10	1687	c.1645G>A	c.(1645-1647)GCC>ACC	p.A549T		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	549	POU-specific.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CAGTCTGACAGCCAAACTGAA	0.502													41	67					0	0	0.002522	0	0
GLI3	2737	broad.mit.edu	37	7	42064977	42064977	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:42064977C>T	uc011kbh.1	-	9	1334	c.1243_splice	c.e9-1	p.N415_splice	GLI3_uc011kbg.1_Splice_Site_p.N356_splice	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3						negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TGGGCTTGTTCTGCTGGTCAC	0.502									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				25	21					0	0	0.005443	0	0
GLI3	2737	broad.mit.edu	37	7	42116431	42116431	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:42116431G>A	uc011kbh.1	-	4	484	c.393C>T	c.(391-393)TTC>TTT	p.F131F	GLI3_uc011kbg.1_Silent_p.F72F	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	131					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CAGGAGGATGGAAGGCAGGGA	0.423									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				24	28					0	0	0.004656	0	0
C7orf25	79020	broad.mit.edu	37	7	42971806	42971806	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:42971806G>A	uc010kxr.2	-	1	1	c.-929_splice	c.e1-1		PSMA2_uc003thy.2_Splice_Site|PSMA2_uc010kxt.2_Splice_Site|PSMA2_uc003thz.1_Splice_Site|MRPL32_uc003tia.2_5'Flank|MRPL32_uc003tib.2_5'Flank|MRPL32_uc003tic.2_5'Flank	NM_001099858	NP_001093328	Q9BPX7	CG025_HUMAN	hypothetical protein LOC79020 a											skin(1)	1						CACTGTGGCCGATTTCCTTTC	0.537													17	27					0	0	0.004007	0	0
HECW1	23072	broad.mit.edu	37	7	43484484	43484484	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:43484484C>T	uc003tid.1	+	11	2318	c.1713C>T	c.(1711-1713)CCC>CCT	p.P571P	HECW1_uc011kbi.1_Silent_p.P571P	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	571					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						ACAGCATGCCCTCCGCCCAGG	0.687													24	17					0	0	0.005443	0	0
HECW1	23072	broad.mit.edu	37	7	43495908	43495908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:43495908G>A	uc003tid.1	+	13	3118	c.2513G>A	c.(2512-2514)CGA>CAA	p.R838Q	HECW1_uc011kbi.1_Missense_Mutation_p.R804Q	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	838	WW 1.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity	p.R817Q(1)|p.R838G(1)		ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TGGGAAGCTCGAATTGACAGC	0.517													23	29					0	0	0.003954	0	0
HECW1	23072	broad.mit.edu	37	7	43508659	43508659	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:43508659G>A	uc003tid.1	+	16	3659	c.3054G>A	c.(3052-3054)CTG>CTA	p.L1018L	HECW1_uc011kbi.1_Silent_p.L984L	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1018	WW 2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						ACACTCGGCTGGAACTGCCCC	0.552													28	41					0	0	0.001271	0	0
STK17A	9263	broad.mit.edu	37	7	43663439	43663439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:43663439C>T	uc003tih.2	+	6	1023	c.872C>T	c.(871-873)TCT>TTT	p.S291F	C7orf44_uc003til.2_Intron|C7orf44_uc003tii.2_Intron|C7orf44_uc003tij.2_Intron|C7orf44_uc010kxu.1_Intron|C7orf44_uc003tik.2_Intron	NM_004760	NP_004751	Q9UEE5	ST17A_HUMAN	serine/threonine kinase 17a	291	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			skin(2)	2						GATGTTTTGTCTGAGTCGGCT	0.279													29	39					0	0	0.002445	0	0
CAMK2B	816	broad.mit.edu	37	7	44286760	44286760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:44286760G>A	uc003tkq.2	-	6	583	c.373C>T	c.(373-375)CTC>TTC	p.L125F	CAMK2B_uc003tkp.2_Missense_Mutation_p.L125F|CAMK2B_uc003tkx.2_Missense_Mutation_p.L125F|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Missense_Mutation_p.L125F|CAMK2B_uc003tks.2_Missense_Mutation_p.L125F|CAMK2B_uc003tku.2_Missense_Mutation_p.L125F|CAMK2B_uc003tkv.2_Missense_Mutation_p.L125F|CAMK2B_uc003tkt.2_Missense_Mutation_p.L125F|CAMK2B_uc003tkw.2_Missense_Mutation_p.L125F|CAMK2B_uc010kyc.2_Missense_Mutation_p.L125F	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	125	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						TGACAATGGAGAACGGCCTCC	0.592													8	12					0	0	0.000673	0	0
NPC1L1	29881	broad.mit.edu	37	7	44561747	44561747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:44561747G>A	uc003tlb.2	-	11	2788	c.2732C>T	c.(2731-2733)TCC>TTC	p.S911F	NPC1L1_uc003tlc.2_Missense_Mutation_p.S911F|NPC1L1_uc011kbw.1_Missense_Mutation_p.S865F|NPC1L1_uc003tla.2_5'Flank	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	911	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AGCCTCGCTGGAGAAGTTGTA	0.537													7	14					0	0	0.001984	0	0
NPC1L1	29881	broad.mit.edu	37	7	44575517	44575517	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:44575517G>A	uc003tlb.2	-	5	1961	c.1905C>T	c.(1903-1905)ATC>ATT	p.I635I	NPC1L1_uc003tlc.2_Silent_p.I635I|NPC1L1_uc011kbw.1_Silent_p.I635I|NPC1L1_uc003tld.2_Silent_p.I635I	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	635	SSD.|Helical; Name=3; (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	TGGTGGCAAAGATGGGCAGGT	0.582													20	37					0	0	0.001523	0	0
ADCY1	107	broad.mit.edu	37	7	45699727	45699727	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:45699727T>A	uc003tne.3	+	7	1412	c.1394T>A	c.(1393-1395)TTC>TAC	p.F465Y	ADCY1_uc003tnd.2_Missense_Mutation_p.F240Y	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	465	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AGGAACAGTTTCTTGAAAACT	0.473													24	33					0	0	0.002780	0	0
ADCY1	107	broad.mit.edu	37	7	45743343	45743343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:45743343G>A	uc003tne.3	+	16	2734	c.2716G>A	c.(2716-2718)GAG>AAG	p.E906K		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	906	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CGACTTTGACGAGGTGAGGCT	0.562													23	26					0	0	0.003330	0	0
ADCY1	107	broad.mit.edu	37	7	45750248	45750248	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:45750248C>T	uc003tne.3	+	19	3072	c.3054C>T	c.(3052-3054)ATC>ATT	p.I1018I		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	1018	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AGGGCAGAATCCAGGTCAGTT	0.403													12	13					0	0	0.001855	0	0
ADCY1	107	broad.mit.edu	37	7	45753424	45753424	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:45753424C>T	uc003tne.3	+	20	3208	c.3190C>T	c.(3190-3192)CAA>TAA	p.Q1064*		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	1064	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AAACGGCTCCCAAATCAGGTC	0.567													35	52					0	0	0.001485	0	0
ADCY1	107	broad.mit.edu	37	7	45753491	45753491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:45753491G>A	uc003tne.3	+	20	3275	c.3257G>A	c.(3256-3258)CGT>CAT	p.R1086H		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	1086	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CAGGGCAGACGTCCCCCCGTG	0.617													20	26					0	0	0.001216	0	0
TNS3	64759	broad.mit.edu	37	7	47384609	47384609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:47384609G>A	uc003tnv.2	-	19	2846	c.2479C>T	c.(2479-2481)CTC>TTC	p.L827F	TNS3_uc003tnw.2_Missense_Mutation_p.L827F	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	827						focal adhesion	protein binding			ovary(4)	4						ATAATATCGAGGTCCTGGGGA	0.478													24	26					0	0	0.001512	0	0
CDC14C	168448	broad.mit.edu	37	7	48964962	48964962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:48964962C>T	uc010kyv.1	+	1	806	c.694C>T	c.(694-696)CGT>TGT	p.R232C		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						TACCATTATTCGTCTGAATAA	0.418													9	10					0	0	0.002450	0	0
IKZF1	10320	broad.mit.edu	37	7	50468158	50468158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:50468158G>A	uc003tow.3	+	9	1561	c.1393G>A	c.(1393-1395)GAA>AAA	p.E465K	IKZF1_uc003tox.3_Missense_Mutation_p.E423K|IKZF1_uc003toy.3_Missense_Mutation_p.E423K|IKZF1_uc011kck.1_Missense_Mutation_p.E378K|IKZF1_uc003toz.3_Missense_Mutation_p.E435K|IKZF1_uc010kyx.2_Missense_Mutation_p.E205K|IKZF1_uc003tpa.3_Missense_Mutation_p.E207K	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	465	C2H2-type 5.				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding			haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GTACAAGTGCGAACACTGCCG	0.627			D		ALL								7	9					0	0	0.003080	0	0
FIGNL1	63979	broad.mit.edu	37	7	50514445	50514445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:50514445G>A	uc003tpc.2	-	4	918	c.541C>T	c.(541-543)CGT>TGT	p.R181C	FIGNL1_uc003tpb.2_Missense_Mutation_p.R70C|FIGNL1_uc003tpd.2_Missense_Mutation_p.R181C|FIGNL1_uc003tpe.2_Missense_Mutation_p.R181C|FIGNL1_uc010kyy.2_Missense_Mutation_p.R181C	NM_001042762	NP_001036227	Q6PIW4	FIGL1_HUMAN	fidgetin-like 1	181					ATP metabolic process|negative regulation of apoptosis|osteoblast differentiation|osteoblast proliferation|regulation of cell cycle	cytoplasm|nucleus	ATP binding|magnesium ion binding|nucleoside-triphosphatase activity			ovary(3)	3	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;3.73e-08)|all_hematologic(4;7.51e-06)				AGTTTCAAACGATTGCTCTCC	0.468													69	111					0	0	0.003610	0	0
POM121L12	285877	broad.mit.edu	37	7	53103599	53103599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:53103599G>A	uc003tpz.2	+	1	251	c.235G>A	c.(235-237)GAG>AAG	p.E79K		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	79											0						CCACCTCATCGAGGTGCGGCC	0.711													11	12					0	0	0.000978	0	0
EGFR	1956	broad.mit.edu	37	7	55259447	55259447	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:55259447C>T	uc003tqk.2	+	21	2751	c.2505C>T	c.(2503-2505)CAC>CAT	p.H835H	EGFR_uc010kzg.1_Silent_p.H790H|EGFR_uc011kco.1_Silent_p.H782H|uc003tqo.2_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	835	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.H835L(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GCTTGGTGCACCGCGACCTGG	0.532		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			14	47					0	0	0.002450	0	0
EGFR	1956	broad.mit.edu	37	7	55259465	55259465	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:55259465G>A	uc003tqk.2	+	21	2769	c.2523G>A	c.(2521-2523)AGG>AGA	p.R841R	EGFR_uc010kzg.1_Silent_p.R796R|EGFR_uc011kco.1_Silent_p.R788R|uc003tqo.2_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	841	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.R841K(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TGGCAGCCAGGAACGTACTGG	0.542		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			16	54					0	0	0.000743	0	0
SUMF2	25870	broad.mit.edu	37	7	56141885	56141885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:56141885C>T	uc003trv.2	+	4	446	c.415C>T	c.(415-417)CCA>TCA	p.P139S	PSPH_uc003trj.2_Intron|SUMF2_uc011kcv.1_RNA|SUMF2_uc011kcw.1_Missense_Mutation_p.P139S|SUMF2_uc011kcx.1_Missense_Mutation_p.P139S|SUMF2_uc003trt.2_Missense_Mutation_p.P32S|SUMF2_uc011kcy.1_Intron|SUMF2_uc011kcz.1_Intron|SUMF2_uc003tru.2_RNA|SUMF2_uc011kda.1_Intron|SUMF2_uc003trx.2_Intron	NM_001130069	NP_001123541	Q8NBJ7	SUMF2_HUMAN	sulfatase modifying factor 2 isoform e	120						endoplasmic reticulum lumen	metal ion binding			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CTGGTGGCTTCCAGTGGAAAA	0.552											OREG0018081	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	59					0	0	0.004878	0	0
ZNF735	730291	broad.mit.edu	37	7	63673555	63673555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:63673555G>A	uc011kdn.1	+	2	125	c.125G>A	c.(124-126)AGA>AAA	p.R42K		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	42	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATTTATATAGAGATGTGATG	0.393													12	17					0	0	0.001368	0	0
ZNF679	168417	broad.mit.edu	37	7	63726689	63726689	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:63726689C>T	uc003tsx.2	+	5	947	c.678C>T	c.(676-678)ACC>ACT	p.T226T		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	226	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GCTCTTCAACCCTTTCTAAAC	0.398													5	4					0	0	0.000602	0	0
ZNF680	340252	broad.mit.edu	37	7	63982354	63982354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:63982354G>A	uc003tta.2	-	4	951	c.778C>T	c.(778-780)CAT>TAT	p.H260Y	ZNF680_uc010kzr.2_Missense_Mutation_p.H187Y	NM_178558	NP_848653	Q8NEM1	ZN680_HUMAN	zinc finger protein 680 isoform 1	260	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.118)|all_lung(88;0.243)				TCTTCAATATGAATTTTCTTA	0.343													14	11					0	0	0.002450	0	0
LOC168474	168474	broad.mit.edu	37	7	64313157	64313157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:64313157C>T	uc003ttj.1	-	1	1022	c.470G>A	c.(469-471)GGG>GAG	p.G157E		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						CAGCACATCCCCTGGTACTGC	0.498													12	9					0	0	0.000978	0	0
LOC493754	493754	broad.mit.edu	37	7	66038513	66038513	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:66038513G>A	uc010lac.1	-	2		c.145C>T			LOC493754_uc010lad.2_RNA|LOC493754_uc011kdx.1_RNA|LOC493754_uc011kdy.1_RNA|LOC493754_uc011kdz.1_RNA|LOC493754_uc011kea.1_RNA|LOC493754_uc003tvc.3_RNA|LOC493754_uc011keb.1_RNA|LOC493754_uc011kec.1_RNA					Homo sapiens cDNA FLJ14309 fis, clone PLACE3000221.												0						TGCTGGCAAAGGCCTCTTCTT	0.458													9	15					0	0	0.000743	0	0
TYW1	55253	broad.mit.edu	37	7	66489985	66489985	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:66489985T>A	uc003tvn.2	+	7	1109	c.960T>A	c.(958-960)ATT>ATA	p.I320I	TYW1_uc010lai.2_RNA	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	320					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				TGGGCAAAATTATGGATCATG	0.408													22	43					0	0	0.003330	0	0
WBSCR17	64409	broad.mit.edu	37	7	71036380	71036380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:71036380G>A	uc003tvy.2	+	6	1073	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	WBSCR17_uc003tvz.2_Missense_Mutation_p.G57E	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	358	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				ATTGAACTGGGAATCAAGGTT	0.478													30	39					0	0	0.003271	0	0
WBSCR17	64409	broad.mit.edu	37	7	71175772	71175772	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:71175772C>T	uc003tvy.2	+	10	1527	c.1527C>T	c.(1525-1527)TTC>TTT	p.F509F	WBSCR17_uc003tvz.2_Silent_p.F208F	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	509	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				AGGAAGGCTTCCTGCACTTGG	0.632													26	40					0	0	0.001061	0	0
CLIP2	7461	broad.mit.edu	37	7	73768221	73768221	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:73768221G>A	uc003uam.2	+	4	1017	c.690G>A	c.(688-690)ACG>ACA	p.T230T	CLIP2_uc003uan.2_Silent_p.T230T	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	230						microtubule associated complex				skin(3)	3						TTGGCGGGACGAAGACTGGCG	0.637													32	47					0	0	0.005524	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73973312	73973312	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:73973312C>T	uc003uaq.2	+	21	2667	c.2274C>T	c.(2272-2274)TTC>TTT	p.F758F	GTF2IRD1_uc010lbq.2_Silent_p.F775F|GTF2IRD1_uc003uap.2_Silent_p.F743F|GTF2IRD1_uc003uar.1_Silent_p.F743F	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	758	GTF2I-like 4.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						CCTGTACCTTCGGCTCCCAGA	0.587													27	30					0	0	0.002096	0	0
HIP1	3092	broad.mit.edu	37	7	75189160	75189161	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:75189160_75189161GG>AA	uc003uds.1	-	14	1291_1292	c.1250_1251CC>TT	c.(1249-1251)GCC>GTT	p.A417V	HIP1_uc011kfz.1_Missense_Mutation_p.A294V	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	417	Potential.|pDED.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GCTGCTGCTCGGCCAGATCTGC	0.668			T	PDGFRB	CMML								37	5					0	0	0.004672	0	0
RHBDD2	57414	broad.mit.edu	37	7	75511310	75511310	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:75511310C>T	uc003udw.1	+	2	426	c.342C>T	c.(340-342)TTC>TTT	p.F114F	RHBDD2_uc003udv.1_5'UTR	NM_001040456	NP_001035546	Q6NTF9	RHBD2_HUMAN	rhomboid domain containing 2 isoform a	114	Helical; (Potential).					integral to membrane	serine-type endopeptidase activity				0						CTATCATCTTCCTGTCATTCG	0.562													81	51					0	0	0.003610	0	0
STYXL1	51657	broad.mit.edu	37	7	75651290	75651290	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:75651290G>A	uc003uej.3	-	4	359	c.186C>T	c.(184-186)CTC>CTT	p.L62L	STYXL1_uc011kgf.1_5'UTR|STYXL1_uc011kgg.1_5'UTR|STYXL1_uc003ueh.2_5'UTR|STYXL1_uc003uek.3_Intron|STYXL1_uc003uel.2_Silent_p.L62L|STYXL1_uc003uem.2_Silent_p.L62L|STYXL1_uc010ldg.1_RNA|STYXL1_uc010ldh.1_Silent_p.L62L|STYXL1_uc003uen.1_Silent_p.L62L	NM_016086	NP_057170	Q9Y6J8	STYL1_HUMAN	map kinase phosphatase-like protein MK-STYX	62	Rhodanese.				intracellular signal transduction|protein dephosphorylation	intracellular	protein binding|protein tyrosine/serine/threonine phosphatase activity				0						CAGACTCCGGGAGAAGATATT	0.448													84	6					0	0	0.003610	0	0
PION	54103	broad.mit.edu	37	7	76942809	76942809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:76942809G>A	uc003ugf.2	-	28	2346	c.2267C>T	c.(2266-2268)CCT>CTT	p.P756L	PION_uc011kgo.1_Missense_Mutation_p.P77L|PION_uc003ugd.2_Missense_Mutation_p.P150L	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	756					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						TATTACCGGAGGAAGCCGCAC	0.343													6	27					0	0	0.004482	0	0
MAGI2	9863	broad.mit.edu	37	7	77789561	77789561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:77789561G>A	uc003ugx.2	-	16	2880	c.2626C>T	c.(2626-2628)CCA>TCA	p.P876S	MAGI2_uc003ugy.2_Missense_Mutation_p.P862S|MAGI2_uc010ldx.1_Missense_Mutation_p.P469S	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	876						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				ACAGAGCCTGGACTTCTCCCG	0.493													35	20					0	0	0.001287	0	0
GNAT3	346562	broad.mit.edu	37	7	80117914	80117914	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:80117914G>A	uc011kgu.1	-	3	240	c.240C>T	c.(238-240)TCC>TCT	p.S80S	CD36_uc003uhc.2_Intron	NM_001102386	NP_001095856	A8MTJ3	GNAT3_HUMAN	guanine nucleotide binding protein, alpha	80					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction|sensory perception of sweet taste|sensory perception of umami taste	cytoplasm|heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						TAGCTAGGATGGATTGCAATG	0.358													4	23					0	0	0.000248	0	0
CACNA2D1	781	broad.mit.edu	37	7	81579768	81579768	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:81579768G>A	uc003uhr.1	-	39	3472	c.3216C>T	c.(3214-3216)ATC>ATT	p.I1072I	uc003uhq.1_5'Flank|CACNA2D1_uc011kgy.1_Silent_p.I284I	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	1084	Helical; (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	GGATTCCAATGATATACCACA	0.388													38	29					0	0	0.001287	0	0
CACNA2D1	781	broad.mit.edu	37	7	81593651	81593651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:81593651C>T	uc003uhr.1	-	33	2855	c.2599G>A	c.(2599-2601)GAT>AAT	p.D867N	CACNA2D1_uc011kgy.1_Missense_Mutation_p.D79N	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	879	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	AAGCTGGGATCAATCTCTCCA	0.373													9	46					0	0	0.000443	0	0
PCLO	27445	broad.mit.edu	37	7	82544227	82544227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:82544227C>T	uc003uhx.2	-	7	13364	c.13075G>A	c.(13075-13077)GAA>AAA	p.E4359K	PCLO_uc003uhv.2_Missense_Mutation_p.E4359K|PCLO_uc010lec.2_Missense_Mutation_p.E1324K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4290					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTTCTTCTTCAGAATTCTGG	0.502													23	60					0	0	0.002780	0	0
PCLO	27445	broad.mit.edu	37	7	82580373	82580373	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:82580373C>T	uc003uhx.2	-	6	9820	c.9531G>A	c.(9529-9531)ACG>ACA	p.T3177T	PCLO_uc003uhv.2_Silent_p.T3177T|PCLO_uc010lec.2_Silent_p.T142T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3108					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGAGTCTATCGTCTCAGCAG	0.413													27	13					0	0	0.001512	0	0
PCLO	27445	broad.mit.edu	37	7	82582174	82582174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:82582174G>A	uc003uhx.2	-	5	8384	c.8095C>T	c.(8095-8097)CCT>TCT	p.P2699S	PCLO_uc003uhv.2_Missense_Mutation_p.P2699S|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2630					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGCTCTGGAGGAATTGTTATG	0.403													21	46					0	0	0.001216	0	0
PCLO	27445	broad.mit.edu	37	7	82764151	82764151	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:82764151G>A	uc003uhx.2	-	3	3004	c.2715C>T	c.(2713-2715)TTC>TTT	p.F905F	PCLO_uc003uhv.2_Silent_p.F905F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	851	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATTCAGACTGAAACGCCTTG	0.537													64	134					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82764365	82764365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:82764365G>A	uc003uhx.2	-	3	2790	c.2501C>T	c.(2500-2502)CCT>CTT	p.P834L	PCLO_uc003uhv.2_Missense_Mutation_p.P834L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	780	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTGGGACCAGGATGTGAAAT	0.423													69	174					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82785168	82785168	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:82785168C>T	uc003uhx.2	-	2	1078	c.789G>A	c.(787-789)CAG>CAA	p.Q263Q	PCLO_uc003uhv.2_Silent_p.Q263Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	263	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTGAGGAGTCTGGGTAGGAC	0.453													10	39					0	0	0.001368	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86541412	86541412	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:86541412G>A	uc011kha.1	-	15	2330	c.2145C>T	c.(2143-2145)TTC>TTT	p.F715F	KIAA1324L_uc003uif.1_Silent_p.F475F|KIAA1324L_uc011kgz.1_Silent_p.F601F|KIAA1324L_uc003uie.2_Silent_p.F548F	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	715	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					AACTGATATTGAAGAAATGGA	0.423													89	66					0	0	0.003610	0	0
ABCB4	5244	broad.mit.edu	37	7	87053297	87053297	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:87053297G>A	uc003uiv.1	-	17	2212	c.2136C>T	c.(2134-2136)GTC>GTT	p.V712V	ABCB4_uc003uiw.1_Silent_p.V712V|ABCB4_uc003uix.1_Silent_p.V712V	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	712	Helical; (By similarity).|ABC transmembrane type-1 2.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CTGTTCCCACGACAAAGTAGG	0.448													45	98					0	0	0.003610	0	0
ABCB4	5244	broad.mit.edu	37	7	87101970	87101970	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:87101970C>T	uc003uiv.1	-	3	178	c.102G>A	c.(100-102)ACG>ACA	p.T34T	ABCB4_uc003uiw.1_Silent_p.T34T|ABCB4_uc003uix.1_Silent_p.T34T|ABCB4_uc003uiy.2_Silent_p.T34T	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	34	Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TCACTGTCTTCGTTTTTTTCC	0.249													30	90					0	0	0.001271	0	0
ABCB1	5243	broad.mit.edu	37	7	87183213	87183213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:87183213C>T	uc003uiz.1	-	10	1281	c.863G>A	c.(862-864)GGG>GAG	p.G288E	ABCB1_uc011khc.1_Missense_Mutation_p.G224E	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	288	ABC transmembrane type-1 1.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTTCTTTATCCCAATTCTTTT	0.358													25	93					0	0	0.004656	0	0
STEAP4	79689	broad.mit.edu	37	7	87912293	87912293	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:87912293A>T	uc003ujs.2	-	3	752	c.647T>A	c.(646-648)TTC>TAC	p.F216Y	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.F216Y	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	216	Helical; (Potential).				fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					AACACAATAGAAAAACAAGAA	0.373													22	43					0	0	0.001523	0	0
MGC26647	219557	broad.mit.edu	37	7	88423752	88423752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:88423752C>T	uc003ujv.2	-	2	687	c.505G>A	c.(505-507)GAG>AAG	p.E169K	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	169											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			GTGATGACCTCCTTTAGGGAC	0.408													60	38					0	0	0.003610	0	0
MGC26647	219557	broad.mit.edu	37	7	88424228	88424228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:88424228C>T	uc003ujv.2	-	2	211	c.29G>A	c.(28-30)GGC>GAC	p.G10D	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	10											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			CCTTTTGCTGCCCTTCTGGTT	0.423													96	81					0	0	0.003610	0	0
C7orf63	79846	broad.mit.edu	37	7	89891307	89891307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:89891307C>T	uc010lep.2	+	4	544	c.293C>T	c.(292-294)TCA>TTA	p.S98L	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_5'UTR|C7orf63_uc011khj.1_Missense_Mutation_p.S98L|C7orf63_uc010leo.2_Missense_Mutation_p.S98L	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	98							binding			ovary(1)	1						AATCTGTGTTCAGGAAAAATA	0.249													55	57					0	0	0.003610	0	0
AKAP9	10142	broad.mit.edu	37	7	91731944	91731944	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:91731944C>T	uc003ulg.2	+	46	11359	c.11134C>T	c.(11134-11136)CGA>TGA	p.R3712*	AKAP9_uc003ulf.2_Nonsense_Mutation_p.R3704*|AKAP9_uc003uli.2_Nonsense_Mutation_p.R3335*|AKAP9_uc003ulj.2_Nonsense_Mutation_p.R1482*|AKAP9_uc003ull.2_Nonsense_Mutation_p.R608*	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3716					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGAAAGTTTTCGAAAGGCTCT	0.453			T	BRAF	papillary thyroid								17	66					0	0	0.000743	0	0
ANKIB1	54467	broad.mit.edu	37	7	92027937	92027937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92027937C>T	uc003ulw.2	+	20	3320	c.2944C>T	c.(2944-2946)CCT>TCT	p.P982S	ANKIB1_uc010lew.1_Missense_Mutation_p.P251S	NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	982							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TGACATGAACCCTCAGAGTAT	0.488													50	36					0	0	0.003610	0	0
SAMD9	54809	broad.mit.edu	37	7	92731473	92731473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92731473G>A	uc003umf.2	-	3	4194	c.3938C>T	c.(3937-3939)TCA>TTA	p.S1313L	SAMD9_uc003umg.2_Missense_Mutation_p.S1313L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1313						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GTTGTTTTGTGATTCTTCTAA	0.383													105	62					0	0	0.003610	0	0
SAMD9	54809	broad.mit.edu	37	7	92734745	92734745	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92734745A>C	uc003umf.2	-	3	922	c.666T>G	c.(664-666)TTT>TTG	p.F222L	SAMD9_uc003umg.2_Missense_Mutation_p.F222L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	222						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AAGCTGAAGCAAATCGGAAAA	0.388													43	114					0	0	0.003610	0	0
SAMD9	54809	broad.mit.edu	37	7	92734772	92734772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92734772C>T	uc003umf.2	-	3	895	c.639G>A	c.(637-639)ATG>ATA	p.M213I	SAMD9_uc003umg.2_Missense_Mutation_p.M213I	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	213						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TGCTAAATTTCATCTTGACAT	0.413													48	118					0	0	0.003610	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761354	92761354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92761354C>T	uc003umh.1	-	5	5147	c.3931G>A	c.(3931-3933)GAT>AAT	p.D1311N	SAMD9L_uc003umj.1_Missense_Mutation_p.D1311N|SAMD9L_uc003umi.1_Missense_Mutation_p.D1311N|SAMD9L_uc010lfb.1_Missense_Mutation_p.D1311N|SAMD9L_uc003umk.1_Missense_Mutation_p.D1311N|SAMD9L_uc010lfc.1_Missense_Mutation_p.D1311N|SAMD9L_uc010lfd.1_Missense_Mutation_p.D1311N|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1311										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AGACATGGATCCAAATGACAG	0.378													131	9					0	0	0.003610	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761924	92761924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92761924C>T	uc003umh.1	-	5	4577	c.3361G>A	c.(3361-3363)GAT>AAT	p.D1121N	SAMD9L_uc003umj.1_Missense_Mutation_p.D1121N|SAMD9L_uc003umi.1_Missense_Mutation_p.D1121N|SAMD9L_uc010lfb.1_Missense_Mutation_p.D1121N|SAMD9L_uc003umk.1_Missense_Mutation_p.D1121N|SAMD9L_uc010lfc.1_Missense_Mutation_p.D1121N|SAMD9L_uc010lfd.1_Missense_Mutation_p.D1121N|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1121										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CCTAGTGTATCTGAAATATAG	0.388													57	139					0	0	0.003610	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763485	92763485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92763485C>T	uc003umh.1	-	5	3016	c.1800G>A	c.(1798-1800)ATG>ATA	p.M600I	SAMD9L_uc003umj.1_Missense_Mutation_p.M600I|SAMD9L_uc003umi.1_Missense_Mutation_p.M600I|SAMD9L_uc010lfb.1_Missense_Mutation_p.M600I|SAMD9L_uc003umk.1_Missense_Mutation_p.M600I|SAMD9L_uc010lfc.1_Missense_Mutation_p.M600I|SAMD9L_uc010lfd.1_Missense_Mutation_p.M600I|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	600										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GTTCATCTTCCATCTTCATTC	0.343													113	24					0	0	0.003610	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763940	92763940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92763940C>T	uc003umh.1	-	5	2561	c.1345G>A	c.(1345-1347)GAA>AAA	p.E449K	SAMD9L_uc003umj.1_Missense_Mutation_p.E449K|SAMD9L_uc003umi.1_Missense_Mutation_p.E449K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E449K|SAMD9L_uc003umk.1_Missense_Mutation_p.E449K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E449K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E449K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	449										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			ATCATAGATTCAGGATCAAAC	0.353													59	55					0	0	0.003610	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764408	92764408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:92764408G>A	uc003umh.1	-	5	2093	c.877C>T	c.(877-879)CTT>TTT	p.L293F	SAMD9L_uc003umj.1_Missense_Mutation_p.L293F|SAMD9L_uc003umi.1_Missense_Mutation_p.L293F|SAMD9L_uc010lfb.1_Missense_Mutation_p.L293F|SAMD9L_uc003umk.1_Missense_Mutation_p.L293F|SAMD9L_uc010lfc.1_Missense_Mutation_p.L293F|SAMD9L_uc010lfd.1_Missense_Mutation_p.L293F|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	293										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TTCTGCAGAAGGACTTCCACA	0.353													60	147					0	0	0.003610	0	0
COL1A2	1278	broad.mit.edu	37	7	94035010	94035010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:94035010C>T	uc003ung.1	+	11	983	c.512C>T	c.(511-513)CCT>CTT	p.P171L	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfh.1_RNA	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	171					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CCTGGAACTCCTGGACTTCCT	0.373										HNSCC(75;0.22)			96	90					0	0	0.003610	0	0
COL1A2	1278	broad.mit.edu	37	7	94052287	94052287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:94052287G>A	uc003ung.1	+	40	2893	c.2422G>A	c.(2422-2424)GGT>AGT	p.G808S	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	808			Missing (in OI2A).|Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TGGCCCTCCTGGTCCCCCTGG	0.527										HNSCC(75;0.22)			36	127					0	0	0.002222	0	0
SGCE	8910	broad.mit.edu	37	7	94259055	94259055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:94259055C>T	uc003unl.2	-	2	319	c.208G>A	c.(208-210)GAA>AAA	p.E70K	SGCE_uc003unm.2_Missense_Mutation_p.E70K|SGCE_uc003unn.2_Missense_Mutation_p.E70K|SGCE_uc011kic.1_Intron|SGCE_uc011kid.1_Missense_Mutation_p.E106K	NM_003919	NP_003910	O43556	SGCE_HUMAN	sarcoglycan, epsilon isoform 2	70	Extracellular (Potential).				cell-matrix adhesion|muscle organ development	cytoplasm|cytoskeleton|integral to plasma membrane|sarcoglycan complex|sarcolemma	calcium ion binding			ovary(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			GGTGGAAATTCCCCCTTAAAA	0.348													107	99					0	0	0.003610	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94918017	94918017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:94918017G>A	uc003unp.2	+	15	3353	c.3071G>A	c.(3070-3072)GGA>GAA	p.G1024E	PPP1R9A_uc010lfj.2_Missense_Mutation_p.G1300E|PPP1R9A_uc011kif.1_Missense_Mutation_p.G1222E|PPP1R9A_uc003unq.2_Intron|PPP1R9A_uc011kig.1_Missense_Mutation_p.G1016E|PPP1R9A_uc003unr.2_Missense_Mutation_p.G313E	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1024	Interacts with TGN38 (By similarity).|SAM.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			CAGTTGGATGGAAATAAACTT	0.368										HNSCC(28;0.073)			25	23					0	0	0.001061	0	0
PON1	5444	broad.mit.edu	37	7	94946066	94946066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:94946066C>T	uc003uns.2	-	3	278	c.181G>A	c.(181-183)GGA>AGA	p.G61R	PON1_uc011kih.1_Missense_Mutation_p.G61R	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	61					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	AAAGCCAGTCCATTAGGCAGT	0.403													51	130					0	0	0.003610	0	0
PDK4	5166	broad.mit.edu	37	7	95222231	95222231	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:95222231G>A	uc003uoa.2	-	4	690	c.370C>T	c.(370-372)CGA>TGA	p.R124*	PDK4_uc003unz.2_5'Flank	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	124					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			TGTCTATTTCGAACTTTGATG	0.353													64	51					0	0	0.003610	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95709754	95709754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:95709754C>T	uc003uoc.3	+	16	2058	c.1781C>T	c.(1780-1782)GCT>GTT	p.A594V	DYNC1I1_uc003uod.3_Missense_Mutation_p.A577V|DYNC1I1_uc003uob.2_Missense_Mutation_p.A557V|DYNC1I1_uc003uoe.3_Missense_Mutation_p.A574V|DYNC1I1_uc010lfl.2_Missense_Mutation_p.A583V	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	594	WD 7.				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			AAAGAAGTTGCTGTTGGGGAC	0.498													54	110					0	0	0.003610	0	0
LMTK2	22853	broad.mit.edu	37	7	97822385	97822385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:97822385C>T	uc003upd.1	+	11	2901	c.2608C>T	c.(2608-2610)CTC>TTC	p.L870F		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	870					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GGTTGAAATTCTCTCAACTGA	0.547													32	9					0	0	0.002445	0	0
TECPR1	25851	broad.mit.edu	37	7	97860614	97860614	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:97860614G>A	uc003upg.2	-	14	2251	c.2046C>T	c.(2044-2046)GCC>GCT	p.A682A	TECPR1_uc003uph.1_Silent_p.A612A	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	682	PH.					integral to membrane	protein binding			pancreas(1)	1						GGGTGTACAGGGCAAAGGAGT	0.622													5	14					0	0	0.001984	0	0
BAIAP2L1	55971	broad.mit.edu	37	7	97949554	97949554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:97949554C>T	uc003upj.2	-	4	534	c.271G>A	c.(271-273)GAA>AAA	p.E91K		NM_018842	NP_061330	Q9UHR4	BI2L1_HUMAN	BAI1-associated protein 2-like 1	91	IMD.				filopodium assembly|positive regulation of actin cytoskeleton reorganization|positive regulation of actin filament polymerization|response to bacterium|signal transduction	cell junction|cytoskeleton|cytosol|nucleus	actin binding|cytoskeletal adaptor activity|proline-rich region binding|SH3 domain binding			ovary(1)	1	all_cancers(62;4.34e-10)|all_epithelial(64;5e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0113)|all_lung(186;0.0126)		STAD - Stomach adenocarcinoma(171;0.215)			CGTACATTTTCATCAAGACTC	0.358													30	20					0	0	0.003271	0	0
TMEM130	222865	broad.mit.edu	37	7	98457810	98457810	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:98457810G>A	uc003upo.2	-	3	732	c.543C>T	c.(541-543)TTC>TTT	p.F181F	TMEM130_uc011kiq.1_Silent_p.F162F|TMEM130_uc011kir.1_Silent_p.F181F|TMEM130_uc003upn.2_Silent_p.F79F	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	181	Extracellular (Potential).|PKD.					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCCGTCCCCGAAGTCCCAGC	0.582													13	13					0	0	0.004007	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99123907	99123907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:99123907C>T	uc003uqv.2	+	6	1368	c.1244C>T	c.(1243-1245)TCC>TTC	p.S415F	ZKSCAN5_uc010lfx.2_Missense_Mutation_p.S415F|ZKSCAN5_uc003uqw.2_Missense_Mutation_p.S415F|ZKSCAN5_uc003uqx.2_Missense_Mutation_p.S342F|ZKSCAN5_uc003uqy.2_Missense_Mutation_p.S151F	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	415	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					CGGGTGAGTTCCCACCTGGTT	0.577													34	94					0	0	0.003755	0	0
ZNF498	221785	broad.mit.edu	37	7	99227197	99227197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:99227197C>T	uc003url.1	+	8	1516	c.1189C>T	c.(1189-1191)CAC>TAC	p.H397Y	ZNF498_uc003urm.1_Missense_Mutation_p.H233Y|ZNF498_uc010lge.1_Missense_Mutation_p.H233Y|ZNF498_uc003urn.2_Intron|ZNF498_uc010lgf.1_Missense_Mutation_p.H325Y|ZNF498_uc003uro.1_Missense_Mutation_p.H181Y	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	397	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					CCAGAGAACCCACCTGGGAAA	0.582													29	17					0	0	0.005443	0	0
CYP3A5	1577	broad.mit.edu	37	7	99273833	99273833	+	Splice_Site	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:99273833T>C	uc003urq.2	-	2	159	c.72_splice	c.e2-1	p.L24_splice	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urr.2_5'UTR|CYP3A5_uc011kiy.1_Splice_Site_p.V14_splice|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron|CYP3A5_uc003urt.2_Splice_Site_p.L24_splice	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,						alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	GTCCCATATCTACAAAGTGAA	0.463													31	25					0	0	0.002445	0	0
CYP3A7	1551	broad.mit.edu	37	7	99305578	99305578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:99305578C>T	uc003uru.2	-	12	1378	c.1273G>A	c.(1273-1275)GAC>AAC	p.D425N	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	425					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					TCTATGTTGTCCTTGTTCTTT	0.383													115	27					0	0	0.003610	0	0
CYP3A7	1551	broad.mit.edu	37	7	99317939	99317939	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:99317939C>T	uc003uru.2	-	4	420	c.315G>A	c.(313-315)CGG>CGA	p.R105R	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	105					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					TGCTTACCCTCCGGTTTGTGA	0.269													107	20					0	0	0.003610	0	0
CYP3A43	64816	broad.mit.edu	37	7	99457577	99457577	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:99457577A>T	uc003urx.1	+	10	1093	c.990A>T	c.(988-990)AAA>AAT	p.K330N	CYP3A43_uc003ury.1_Missense_Mutation_p.K330N|CYP3A43_uc003urz.1_Missense_Mutation_p.K330N|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Missense_Mutation_p.K220N|CYP3A43_uc003usb.1_Missense_Mutation_p.K190N	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	330			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	TCCAGCAGAAACTGCAGGAGG	0.493													20	73					0	0	0.001523	0	0
ZCWPW1	55063	broad.mit.edu	37	7	100004870	100004870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100004870G>A	uc003uut.2	-	11	1294	c.1046C>T	c.(1045-1047)TCC>TTC	p.S349F	ZCWPW1_uc011kjq.1_Missense_Mutation_p.S229F|ZCWPW1_uc003uur.2_Missense_Mutation_p.S229F|ZCWPW1_uc003uus.2_Missense_Mutation_p.S229F|ZCWPW1_uc011kjr.1_Missense_Mutation_p.S349F|ZCWPW1_uc003uuu.1_Missense_Mutation_p.S350F|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	349	PWWP.						zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATCAAGATGGGAAGTAAAAAG	0.463													6	20					0	0	0.001984	0	0
LRCH4	4034	broad.mit.edu	37	7	100175318	100175318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100175318G>A	uc003uvj.2	-	9	1138	c.1085C>T	c.(1084-1086)CCC>CTC	p.P362L	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	362					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATCCTCCCCGGGGACATGGCT	0.662													40	87					0	0	0.003610	0	0
FBXO24	26261	broad.mit.edu	37	7	100187602	100187602	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100187602G>A	uc003uvm.1	+	2	335	c.42G>A	c.(40-42)GTG>GTA	p.V14V	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Silent_p.V14V|FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Silent_p.V52V|FBXO24_uc011kka.1_Silent_p.V2V	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	14						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					TTGGGTAGGTGAAGAGAAGCT	0.557													14	55					0	0	0.004990	0	0
GIGYF1	64599	broad.mit.edu	37	7	100285477	100285477	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100285477G>A	uc003uwg.1	-	3	1204	c.195C>T	c.(193-195)TTC>TTT	p.F65F		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	65										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GCACCGCGGCGAACTCCTTGT	0.677													22	38					0	0	0.002299	0	0
ZAN	7455	broad.mit.edu	37	7	100350328	100350328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100350328C>T	uc003uwj.2	+	14	2765	c.2600C>T	c.(2599-2601)TCC>TTC	p.S867F	ZAN_uc003uwk.2_Missense_Mutation_p.S867F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	867	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCCACCATCTCCCCAGAAAAA	0.488													34	28					0	0	0.003271	0	0
ZAN	7455	broad.mit.edu	37	7	100371095	100371095	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100371095C>T	uc003uwj.2	+	30	5778	c.5613C>T	c.(5611-5613)GAC>GAT	p.D1871D	ZAN_uc003uwk.2_Silent_p.D1871D|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Silent_p.D448D|ZAN_uc011kke.1_5'Flank	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1871	VWFC 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GCTGCACTGACCCAGCGGGCT	0.637													11	12					0	0	0.000978	0	0
SLC12A9	56996	broad.mit.edu	37	7	100456509	100456509	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100456509C>T	uc003uwp.2	+	6	952	c.810C>T	c.(808-810)GTC>GTT	p.V270V	SLC12A9_uc003uwq.2_Silent_p.V181V|SLC12A9_uc011kki.1_5'UTR|SLC12A9_uc003uwr.2_Silent_p.V6V|SLC12A9_uc003uws.2_5'UTR|SLC12A9_uc003uwt.2_Silent_p.V6V|SLC12A9_uc003uwv.2_5'UTR	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	270	Helical; (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					TTGCCAGCGTCTTTGCTGTCC	0.592													17	44					0	0	0.001216	0	0
MUC17	140453	broad.mit.edu	37	7	100677590	100677590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100677590C>T	uc003uxp.1	+	3	2946	c.2893C>T	c.(2893-2895)CCT>TCT	p.P965S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	965	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|14.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACTTCATCTCCTACAACTGC	0.522													135	444					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100679542	100679542	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100679542C>A	uc003uxp.1	+	3	4898	c.4845C>A	c.(4843-4845)ACC>ACA	p.T1615T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1615	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|25.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CATCTACAACCGCTGAAGGTA	0.502													11	243					6.40141e-05	0.000110345	0.000978	1	0
MOGAT3	346606	broad.mit.edu	37	7	100841541	100841541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:100841541G>A	uc003uyc.2	-	5	766	c.599C>T	c.(598-600)TCA>TTA	p.S200L	MOGAT3_uc010lhr.2_Missense_Mutation_p.S200L	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	200					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					CCCGGGGACTGAATACAGGGC	0.672													40	4					0	0	0.002852	0	0
PRKRIP1	79706	broad.mit.edu	37	7	102040047	102040047	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:102040047C>T	uc003uzh.2	+	3	313	c.258C>T	c.(256-258)CGC>CGT	p.R86R	PRKRIP1_uc003uzf.2_Silent_p.R35R|PRKRIP1_uc003uzg.2_Silent_p.R35R|PRKRIP1_uc011kkq.1_Silent_p.R29R|PRKRIP1_uc011kkr.1_Silent_p.R86R	NM_024653	NP_078929	Q9H875	PKRI1_HUMAN	PRKR interacting protein 1 (IL11 inducible)	86	Required for RNA-binding (By similarity).					nucleolus				ovary(1)	1						GACATCTGCGCCGGAGAGAAT	0.542													99	14					0	0	0.003610	0	0
FBXL13	222235	broad.mit.edu	37	7	102518011	102518011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:102518011C>T	uc003vaq.2	-	16	1965	c.1538G>A	c.(1537-1539)CGA>CAA	p.R513Q	FBXL13_uc010liq.1_Intron|FBXL13_uc010lir.1_Missense_Mutation_p.R513Q|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.R513Q	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	513	LRR 11.										0						TTCACAATTTCGTAAACTCAA	0.323													38	92					0	0	0.001951	0	0
FBXL13	222235	broad.mit.edu	37	7	102604101	102604101	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:102604101G>A	uc003vaq.2	-	8	1030	c.603C>T	c.(601-603)TCC>TCT	p.S201S	FBXL13_uc010liq.1_Silent_p.S16S|FBXL13_uc010lir.1_Silent_p.S201S|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Silent_p.S201S|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	201											0						TTTTCACTGAGGAAAAATCAA	0.229													24	75					0	0	0.003954	0	0
RELN	5649	broad.mit.edu	37	7	103275976	103275976	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:103275976G>A	uc003vca.2	-	19	2521	c.2361C>T	c.(2359-2361)GCC>GCT	p.A787A	RELN_uc010liz.2_Silent_p.A787A	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	787					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GCTGATCAGGGGCTCTGCACG	0.408													35	93					0	0	0.005524	0	0
PIK3CG	5294	broad.mit.edu	37	7	106508675	106508675	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:106508675C>T	uc003vdv.3	+	2	754	c.669C>T	c.(667-669)GTC>GTT	p.V223V	PIK3CG_uc003vdu.2_Silent_p.V223V|PIK3CG_uc003vdw.2_Silent_p.V223V	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	223					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TCTTCATCGTCATTCACCGCA	0.587													70	48					0	0	0.003610	0	0
SLC26A3	1811	broad.mit.edu	37	7	107423303	107423303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:107423303C>T	uc003ver.2	-	11	1461	c.1250G>A	c.(1249-1251)GGT>GAT	p.G417D	SLC26A3_uc003ves.2_Missense_Mutation_p.G382D	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	417	Helical; (Potential).				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						GATGATGGCACCAATAAGCCC	0.428													45	32					0	0	0.003214	0	0
LAMB1	3912	broad.mit.edu	37	7	107626734	107626734	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:107626734G>A	uc003vew.2	-	6	833	c.498C>T	c.(496-498)TTC>TTT	p.F166F	LAMB1_uc003vev.2_Silent_p.F190F|LAMB1_uc003vex.2_Silent_p.F166F|LAMB1_uc010ljn.1_Silent_p.F252F	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	166	Laminin N-terminal.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGTCATAGGCGAAGTATCTAT	0.448													29	72					0	0	0.002836	0	0
LAMB4	22798	broad.mit.edu	37	7	107664613	107664613	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:107664613C>T	uc010ljo.1	-	34	5241	c.5157G>A	c.(5155-5157)AGG>AGA	p.R1719R	LAMB4_uc003vey.2_Silent_p.R1719R	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1719	Potential.|Domain I.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CTTGGATTTTCCTTTCTAAAT	0.318													8	21					0	0	0.004482	0	0
NRCAM	4897	broad.mit.edu	37	7	107807368	107807368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:107807368G>A	uc003vfb.2	-	30	3935	c.3464C>T	c.(3463-3465)CCA>CTA	p.P1155L	NRCAM_uc003vfc.2_Intron|NRCAM_uc011kmk.1_Intron|NRCAM_uc003vfd.2_Intron|NRCAM_uc003vfe.2_Intron|NRCAM_uc011kmj.1_Intron	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	1155	Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						AGCCTCACCTGGGCCTGTCTC	0.572													13	10					0	0	0.003163	0	0
DOCK4	9732	broad.mit.edu	37	7	111555930	111555930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:111555930C>T	uc003vfx.2	-	13	1365	c.1096G>A	c.(1096-1098)GGA>AGA	p.G366R	DOCK4_uc003vfy.2_Missense_Mutation_p.G366R|DOCK4_uc003vga.1_5'UTR	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	366					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TCAATGTCTCCGTGCAATAGC	0.353													7	23					0	0	0.001984	0	0
ZNF277	11179	broad.mit.edu	37	7	111927124	111927124	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:111927124C>T	uc003vge.2	+	2	417	c.288C>T	c.(286-288)TTC>TTT	p.F96F	ZNF277_uc003vgd.2_Silent_p.F96F|ZNF277_uc003vgf.2_Silent_p.F18F|ZNF277_uc003vgc.2_Silent_p.F96F	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277	96						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						TTGCTGATTTCCAAAGGTAAG	0.244													84	71					0	0	0.003610	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518603	113518603	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:113518603G>A	uc010ljy.1	-	4	2575	c.2544C>T	c.(2542-2544)TCC>TCT	p.S848S		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	848					glycogen metabolic process	integral to membrane		p.S848Y(1)		lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TGACCCATGAGGATTCTTCCA	0.373													95	78					0	0	0.003610	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113559025	113559025	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:113559025C>T	uc010ljy.1	-	1	58	c.27G>A	c.(25-27)CAG>CAA	p.Q9Q		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	9					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTTTGCTAATCTGACTAGGTA	0.383													43	30					0	0	0.002222	0	0
TFEC	22797	broad.mit.edu	37	7	115582074	115582074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:115582074C>T	uc003vhj.1	-	7	720	c.536G>A	c.(535-537)GGA>GAA	p.G179E	TFEC_uc003vhk.1_Missense_Mutation_p.G150E|TFEC_uc003vhl.3_Missense_Mutation_p.G150E|TFEC_uc011kmw.1_Missense_Mutation_p.G269E	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	179	Helix-loop-helix motif.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			TAGAATGGTTCCTTTGTTCCA	0.383													55	118					0	0	0.003610	0	0
ASZ1	136991	broad.mit.edu	37	7	117007497	117007497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:117007497G>A	uc003vjb.2	-	12	1247	c.1184C>T	c.(1183-1185)CCC>CTC	p.P395L	ASZ1_uc011kno.1_Intron|ASZ1_uc011knp.1_Missense_Mutation_p.P187L	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	395					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			AAAATTCTGGGGAGAAGCCCA	0.284													69	10					0	0	0.003610	0	0
CFTR	1080	broad.mit.edu	37	7	117230453	117230453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:117230453G>A	uc003vjd.2	+	13	1858	c.1726G>A	c.(1726-1728)GGA>AGA	p.G576R	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	576	Cytoplasmic (Potential).|ABC transporter 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CTCTCCTTTTGGATACCTAGA	0.289									Cystic_Fibrosis				83	82					0	0	0.003610	0	0
CFTR	1080	broad.mit.edu	37	7	117242901	117242901	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:117242901C>T	uc003vjd.2	+	16	2773	c.2641C>T	c.(2641-2643)CTG>TTG	p.L881L	CFTR_uc011knq.1_Silent_p.L287L	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	881	ABC transmembrane type-1 2.|Extracellular (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTTGGTTGTGCTGTGGCTCCT	0.368									Cystic_Fibrosis				141	89					0	0	0.003610	0	0
C7orf58	79974	broad.mit.edu	37	7	120686957	120686958	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:120686957_120686958GG>AA	uc003vjq.3	+	4	897_898	c.450_451GG>AA	c.(448-453)TGGGAT>TGAAAT	p.150_151WD>*N	C7orf58_uc003vjr.1_Nonsense_Mutation_p.150_151WD>*N|C7orf58_uc003vjs.3_Nonsense_Mutation_p.150_151WD>*N	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	150_151						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TGGGCTCTTGGGATCTGCTCAT	0.332													106	95					0	0	0.004672	0	0
C7orf58	79974	broad.mit.edu	37	7	120737878	120737878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:120737878G>A	uc003vjq.3	+	6	1189	c.742G>A	c.(742-744)GAA>AAA	p.E248K	C7orf58_uc003vjr.1_Missense_Mutation_p.E248K|C7orf58_uc003vjs.3_Missense_Mutation_p.E248K|C7orf58_uc003vjt.3_Missense_Mutation_p.E28K|C7orf58_uc010lkk.1_Missense_Mutation_p.E28K	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	248						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CTGGAGTCGTGAACAGCTGTA	0.438													29	78					0	0	0.001271	0	0
C7orf58	79974	broad.mit.edu	37	7	120764413	120764413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:120764413G>A	uc003vjq.3	+	8	1394	c.947G>A	c.(946-948)AGA>AAA	p.R316K	C7orf58_uc003vjr.1_Missense_Mutation_p.R316K|C7orf58_uc003vjs.3_Missense_Mutation_p.R316K|C7orf58_uc003vjt.3_Missense_Mutation_p.R96K|C7orf58_uc010lkk.1_Missense_Mutation_p.R96K	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	316						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					ACATTCCTGAGAGCCAGTTCA	0.408													72	51					0	0	0.003610	0	0
FEZF1	389549	broad.mit.edu	37	7	121943281	121943281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:121943281C>T	uc003vkd.2	-	2	960	c.886G>A	c.(886-888)GGT>AGT	p.G296S	FEZF1_uc003vkc.2_Missense_Mutation_p.G246S|uc010lko.1_5'Flank|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	296	C2H2-type 2.				cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						TGCCTGAAACCTTTTCCGCAC	0.463													88	56					0	0	0.003610	0	0
SLC13A1	6561	broad.mit.edu	37	7	122821071	122821071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:122821071G>A	uc003vkm.2	-	2	209	c.184C>T	c.(184-186)CCT>TCT	p.P62S	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	62						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	ATTAAACTAGGTAGCAAAGCT	0.423													36	25					0	0	0.004878	0	0
IQUB	154865	broad.mit.edu	37	7	123092841	123092841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:123092841C>T	uc003vkn.2	-	13	2909	c.2332G>A	c.(2332-2334)GAC>AAC	p.D778N	IQUB_uc011kny.1_Missense_Mutation_p.D111N|IQUB_uc003vko.2_Missense_Mutation_p.D778N|IQUB_uc010lkt.2_RNA	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	778										ovary(3)|large_intestine(1)	4						GGTGTTGTGTCTGAGTGATAC	0.398													25	27					0	0	0.004656	0	0
GRM8	2918	broad.mit.edu	37	7	126173045	126173045	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:126173045G>A	uc003vlr.2	-	8	2702	c.2391C>T	c.(2389-2391)TTC>TTT	p.F797F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.F797F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	797	Helical; Name=6; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AGATGGGGATGAAAGCTAACC	0.393										HNSCC(24;0.065)			40	9					0	0	0.002852	0	0
GRM8	2918	broad.mit.edu	37	7	126746568	126746568	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:126746568G>A	uc003vlr.2	-	2	1020	c.709C>T	c.(709-711)CAG>TAG	p.Q237*	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Nonsense_Mutation_p.Q237*|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_5'UTR	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	237	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CTCGAGATCTGGGTGAAGGCC	0.488										HNSCC(24;0.065)			7	31					0	0	0.004482	0	0
FSCN3	29999	broad.mit.edu	37	7	127240292	127240292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:127240292C>T	uc003vmd.1	+	6	1555	c.1336C>T	c.(1336-1338)CGC>TGC	p.R446C	FSCN3_uc011koh.1_Missense_Mutation_p.S310L|FSCN3_uc010llc.1_Missense_Mutation_p.S444L	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	446						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						TGGCACCTTTCGCCCTTGGGG	0.557													41	14					0	0	0.003610	0	0
LRRC4	64101	broad.mit.edu	37	7	127670519	127670519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:127670519C>T	uc003vmk.2	-	2	312	c.175G>A	c.(175-177)GTG>ATG	p.V59M	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	59	LRRNT.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		GTGCACACCACCTTGCTGAAC	0.632													49	35					0	0	0.003610	0	0
LEP	3952	broad.mit.edu	37	7	127894657	127894657	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:127894657G>A	uc003vml.2	+	3	402	c.345G>A	c.(343-345)AAG>AAA	p.K115K	LEP_uc003vmm.2_Silent_p.K114K	NM_000230	NP_000221	P41159	LEP_HUMAN	leptin precursor	115					adult feeding behavior|energy reserve metabolic process|negative regulation of appetite|placenta development|positive regulation of developmental growth	extracellular space					0						CCTTCTCTAAGAGCTGCCACT	0.577													72	10					0	0	0.003610	0	0
RBM28	55131	broad.mit.edu	37	7	127950946	127950946	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:127950946G>A	uc003vmp.2	-	19	2299	c.2184C>T	c.(2182-2184)ACC>ACT	p.T728T	RBM28_uc003vmo.2_Silent_p.T270T|RBM28_uc011koj.1_Silent_p.T587T	NM_018077	NP_060547	Q9NW13	RBM28_HUMAN	RNA binding motif protein 28	728					mRNA processing|RNA splicing	Golgi apparatus|nucleolus|spliceosomal complex	nucleotide binding|RNA binding			ovary(2)	2						GGTTGAAGCGGGTTTCCGTCT	0.363													45	111					0	0	0.002522	0	0
FLNC	2318	broad.mit.edu	37	7	128480724	128480724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:128480724C>T	uc003vnz.3	+	10	1881	c.1672C>T	c.(1672-1674)CGC>TGC	p.R558C	FLNC_uc003voa.3_Missense_Mutation_p.R558C	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	558	Filamin 3.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CGCCATCCCTCGCAGGTGAGT	0.642													72	35					0	0	0.003610	0	0
FLNC	2318	broad.mit.edu	37	7	128497188	128497188	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:128497188C>T	uc003vnz.3	+	46	7787	c.7578C>T	c.(7576-7578)TTC>TTT	p.F2526F	FLNC_uc003voa.3_Silent_p.F2493F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2526	Interaction with INPPL1.|Filamin 23.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CATCAGAGTTCATCGTGAACA	0.632													82	61					0	0	0.003610	0	0
TSPAN33	340348	broad.mit.edu	37	7	128801540	128801540	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:128801540G>A	uc003vop.1	+	2	352	c.123G>A	c.(121-123)GTG>GTA	p.V41V		NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	tetraspanin 33	41	Helical; (Potential).					integral to membrane				ovary(1)	1						TGGTGATGGTGGCTGTGGGTG	0.567													22	121					0	0	0.002299	0	0
CPA2	1358	broad.mit.edu	37	7	129909541	129909541	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:129909541G>A	uc003vpq.2	+	3	205	c.186G>A	c.(184-186)GGG>GGA	p.G62G	CPA2_uc011kpc.1_Silent_p.G62G	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	62					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					CCACCCCAGGGGAGACAGCCC	0.507													13	52					0	0	0.002450	0	0
CPA5	93979	broad.mit.edu	37	7	130007273	130007273	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:130007273A>G	uc010lmd.1	+	12	1519	c.899A>G	c.(898-900)GAG>GGG	p.E300G	CPA5_uc003vps.2_Missense_Mutation_p.E300G|CPA5_uc003vpt.2_Missense_Mutation_p.E300G|CPA5_uc010lme.1_Missense_Mutation_p.E300G|CPA5_uc003vpu.1_Missense_Mutation_p.E300G|uc003vpv.1_RNA	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	300					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					CCTCAGTCGGAGCCGGAGGTG	0.507													12	56					0	0	0.000978	0	0
PLXNA4	91584	broad.mit.edu	37	7	131833406	131833406	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:131833406C>T	uc003vra.3	-	26	4890	c.4661_splice	c.e26-1	p.E1554_splice		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1							integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGTCGCCACTCTGCCAAAAGA	0.537													34	19					0	0	0.005524	0	0
PLXNA4	91584	broad.mit.edu	37	7	131849006	131849006	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:131849006G>A	uc003vra.3	-	24	4624	c.4395C>T	c.(4393-4395)ATC>ATT	p.I1465I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1465	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCTGCTGCTTGATGGCACAGA	0.577													27	5					0	0	0.002096	0	0
PLXNA4	91584	broad.mit.edu	37	7	131853305	131853305	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:131853305C>T	uc003vra.3	-	22	4273	c.4044G>A	c.(4042-4044)GTG>GTA	p.V1348V		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1348	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GGCCTTTCTCCACACGCTCCT	0.607													21	11					0	0	0.002299	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192477	132192477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:132192477G>A	uc003vra.3	-	2	1205	c.976C>T	c.(976-978)CTT>TTT	p.L326F	PLXNA4_uc003vrc.2_Missense_Mutation_p.L326F|PLXNA4_uc003vrb.2_Missense_Mutation_p.L326F	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	326	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGGACTCCAAGGGTCCTGCCA	0.587													29	24					0	0	0.001512	0	0
EXOC4	60412	broad.mit.edu	37	7	133160191	133160191	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:133160191A>T	uc003vrk.2	+	8	1327	c.1292A>T	c.(1291-1293)AAG>ATG	p.K431M	EXOC4_uc011kpo.1_Missense_Mutation_p.K330M|EXOC4_uc003vri.2_Missense_Mutation_p.K431M|EXOC4_uc003vrj.2_Missense_Mutation_p.K431M	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	431					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				TTTTTTGCCAAGAAGAAACCT	0.383													49	150					0	0	0.003610	0	0
EXOC4	60412	broad.mit.edu	37	7	133689691	133689691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:133689691C>T	uc003vrk.2	+	16	2410	c.2375C>T	c.(2374-2376)CCT>CTT	p.P792L	EXOC4_uc011kpo.1_Missense_Mutation_p.P691L|EXOC4_uc003vrl.2_Missense_Mutation_p.P402L|EXOC4_uc011kpp.1_Missense_Mutation_p.P324L|EXOC4_uc011kpq.1_Missense_Mutation_p.P80L	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	792					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				TATCTTATCCCTCTTGCAAAG	0.453													65	37					0	0	0.003610	0	0
AKR1B10	57016	broad.mit.edu	37	7	134215495	134215495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:134215495G>A	uc003vrr.2	+	2	487	c.167G>A	c.(166-168)GGG>GAG	p.G56E		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	56					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						CATGAAGTGGGGGAAGCCATC	0.502													48	87					0	0	0.003610	0	0
AKR1B10	57016	broad.mit.edu	37	7	134223737	134223737	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:134223737C>T	uc003vrr.2	+	9	1196	c.876C>T	c.(874-876)TTC>TTT	p.F292F		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	292					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						TACTCAGCTTCAACAGAAACT	0.428													29	36					0	0	0.004878	0	0
CHRM2	1129	broad.mit.edu	37	7	136700038	136700038	+	Missense_Mutation	SNP	G	A	A	rs142493466		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:136700038G>A	uc003vtf.1	+	4	1049	c.426G>A	c.(424-426)ATG>ATA	p.M142I	CHRM2_uc003vtg.1_Missense_Mutation_p.M142I|CHRM2_uc003vtj.1_Missense_Mutation_p.M142I|CHRM2_uc003vtk.1_Missense_Mutation_p.M142I|CHRM2_uc003vtl.1_Missense_Mutation_p.M142I|CHRM2_uc003vtm.1_Missense_Mutation_p.M142I|CHRM2_uc003vti.1_Missense_Mutation_p.M142I|CHRM2_uc003vto.1_Missense_Mutation_p.M142I|CHRM2_uc003vtn.1_Missense_Mutation_p.M142I|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	142	Helical; Name=4; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	TGGCAGGTATGATGATTGCAG	0.502													59	35					0	0	0.003610	0	0
CHRM2	1129	broad.mit.edu	37	7	136700737	136700737	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:136700737G>A	uc003vtf.1	+	4	1748	c.1125G>A	c.(1123-1125)AAG>AAA	p.K375K	CHRM2_uc003vtg.1_Silent_p.K375K|CHRM2_uc003vtj.1_Silent_p.K375K|CHRM2_uc003vtk.1_Silent_p.K375K|CHRM2_uc003vtl.1_Silent_p.K375K|CHRM2_uc003vtm.1_Silent_p.K375K|CHRM2_uc003vti.1_Silent_p.K375K|CHRM2_uc003vto.1_Silent_p.K375K|CHRM2_uc003vtn.1_Silent_p.K375K|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	375	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CTGCAAAAAAGAAGCCTCCTC	0.483													89	11					0	0	0.003610	0	0
DGKI	9162	broad.mit.edu	37	7	137076046	137076046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:137076046C>T	uc003vtt.2	-	34	3119	c.3118G>A	c.(3118-3120)GAC>AAC	p.D1040N	DGKI_uc003vtu.2_Missense_Mutation_p.D709N	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	1040					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						AAGTCTGGGTCCCCAGCCTGC	0.468													76	9					0	0	0.003610	0	0
AKR1D1	6718	broad.mit.edu	37	7	137782621	137782621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:137782621G>A	uc003vtz.2	+	4	457	c.388G>A	c.(388-390)GAA>AAA	p.E130K	AKR1D1_uc011kqb.1_Missense_Mutation_p.E130K|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Missense_Mutation_p.E130K|AKR1D1_uc011kqf.1_Missense_Mutation_p.E130K|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	130					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						GCCAGGAGATGAAATATACCC	0.239													63	47					0	0	0.003610	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138394418	138394418	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:138394418G>A	uc003vuf.2	-	20	2618	c.2380C>T	c.(2380-2382)CTG>TTG	p.L794L	ATP6V0A4_uc003vug.2_Silent_p.L794L|ATP6V0A4_uc003vuh.2_Silent_p.L794L	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	794	Helical; (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						TCCATGATCAGAAGGATGGCT	0.473													56	120					0	0	0.003610	0	0
KIAA1549	57670	broad.mit.edu	37	7	138545893	138545893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:138545893G>A	uc011kql.1	-	16	5288	c.5239C>T	c.(5239-5241)CCC>TCC	p.P1747S	KIAA1549_uc011kqi.1_Missense_Mutation_p.P531S|KIAA1549_uc003vuk.3_Missense_Mutation_p.P1697S|KIAA1549_uc011kqj.1_Missense_Mutation_p.P1747S|KIAA1549_uc011kqk.1_Missense_Mutation_p.P531S	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1747						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						ACACTGCAGGGATTGTTGGCC	0.582			O	BRAF	pilocytic astrocytoma								34	10					0	0	0.003271	0	0
TBXAS1	6916	broad.mit.edu	37	7	139636058	139636058	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:139636058G>T	uc011kqv.1	+	5	569	c.405G>T	c.(403-405)GAG>GAT	p.E135D	TBXAS1_uc003vvh.2_Missense_Mutation_p.E135D|TBXAS1_uc010lne.2_Missense_Mutation_p.E67D|TBXAS1_uc011kqu.1_Missense_Mutation_p.E86D|TBXAS1_uc003vvi.2_Missense_Mutation_p.E135D|TBXAS1_uc003vvj.2_Missense_Mutation_p.E135D|TBXAS1_uc011kqw.1_Missense_Mutation_p.E115D	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	134	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					GATGGGAAGAGGTCAGAGGTG	0.493													128	84					6.63191e-72	1.15604e-71	0.003610	1	0
PARP12	64761	broad.mit.edu	37	7	139737607	139737607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:139737607G>A	uc003vvl.1	-	7	2106	c.1232C>T	c.(1231-1233)GCC>GTC	p.A411V	PARP12_uc003vvk.1_Missense_Mutation_p.A197V|PARP12_uc010lnf.1_Intron	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	411	WWE 2.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					GGCCAGGTAGGCCTTCTCCAC	0.557													28	11					0	0	0.001061	0	0
DENND2A	27147	broad.mit.edu	37	7	140221881	140221881	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:140221881C>G	uc010lnj.2	-	16	2830	c.2685G>C	c.(2683-2685)TTG>TTC	p.L895F	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.L895F|DENND2A_uc003vvw.2_Missense_Mutation_p.L895F	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	895	dDENN.									ovary(3)|breast(1)	4	Melanoma(164;0.00956)					CCACCTCGTTCAAGGGGCTGG	0.577													22	23					0	0	0.001271	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				67	13					0	0	0.004672	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635690	141635690	+	Missense_Mutation	SNP	G	A	A	rs117965702	by1000genomes	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:141635690G>A	uc003vwv.1	-	5	466	c.269C>T	c.(268-270)TCA>TTA	p.S90L	CLEC5A_uc011krm.1_Missense_Mutation_p.S67L|CLEC5A_uc003vww.1_Missense_Mutation_p.S90L|CLEC5A_uc010lnq.1_Missense_Mutation_p.S67L|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	90	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					ATTCCAAGATGATTCAGAAGT	0.423													33	60					0	0	0.001786	0	0
MGAM	8972	broad.mit.edu	37	7	141731538	141731539	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:141731538_141731539GG>AA	uc003vwy.2	+	13	1583_1584	c.1529_1530GG>AA	c.(1528-1530)TGG>TAA	p.W510*		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	510	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCTGTTTGGTGGACAAAGGAAT	0.366													56	66					0	0	0.004672	0	0
TRYX3	136541	broad.mit.edu	37	7	141955111	141955111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:141955111C>T	uc003vxb.2	-	3	520	c.200G>A	c.(199-201)GGG>GAG	p.G67E	TRYX3_uc003vxc.3_Missense_Mutation_p.G67E	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	67	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					GATTGTAACCCCCAATATCAC	0.418													30	68					0	0	0.004289	0	0
Unknown	0	broad.mit.edu	37	7	142498751	142498751	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:142498751G>A	uc011ksh.1	+	3		c.130G>A			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Missense_Mutation_p.E56K|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		GTTCCCACCCGAGGTCGCTGT	0.567													41	29					0	0	0.003610	0	0
TRPV6	55503	broad.mit.edu	37	7	142572285	142572285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:142572285C>T	uc003wbx.1	-	11	1627	c.1411G>A	c.(1411-1413)GGA>AGA	p.G471R	TRPV6_uc003wbw.1_Missense_Mutation_p.G257R|TRPV6_uc010lou.1_Missense_Mutation_p.G342R	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	471	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					ATCTGGAATCCTCGGGCGAAG	0.552													16	59					0	0	0.003163	0	0
C7orf34	135927	broad.mit.edu	37	7	142636725	142636726	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:142636725_142636726CC>TT	uc003wca.2	+	1	123_124	c.82_83CC>TT	c.(82-84)CCC>TTC	p.P28F		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	3						extracellular region					0	Melanoma(164;0.059)					GTCCATGCCTCCCCTGGCCCCC	0.658													9	25					0	0	0.004672	0	0
KEL	3792	broad.mit.edu	37	7	142649701	142649701	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:142649701G>A	uc003wcb.2	-	10	1308	c.1098C>T	c.(1096-1098)ATC>ATT	p.I366I		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	366	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					CCAGCCCTAAGATCATGTGGC	0.527													36	14					0	0	0.001706	0	0
CLCN1	1180	broad.mit.edu	37	7	143029883	143029883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:143029883C>T	uc003wcr.1	+	12	1405	c.1318C>T	c.(1318-1320)CCT>TCT	p.P440S	CLCN1_uc011ktc.1_Intron	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	440					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CGCGGGTGATCCTGAGAGCCT	0.522													37	83					0	0	0.004878	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175481	143175481	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:143175481G>A	uc003wdc.1	+	1	516	c.516G>A	c.(514-516)TGG>TGA	p.W172*	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	172	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					CCTACAAGTGGAATACAAGGA	0.343													13	52					0	0	0.001855	0	0
OR2F2	135948	broad.mit.edu	37	7	143632523	143632523	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:143632523C>T	uc011ktv.1	+	1	198	c.198C>T	c.(196-198)CTC>CTT	p.L66L		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TCACCAACCTCTCCCTTGTCG	0.517													114	105					0	0	0.003610	0	0
OR2F1	26211	broad.mit.edu	37	7	143657094	143657094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:143657094G>A	uc003wds.1	+	1	75	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					TTGGGTGAGTGAATTTATTCT	0.438													42	120					0	0	0.003610	0	0
OR2A5	393046	broad.mit.edu	37	7	143748032	143748032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:143748032G>A	uc011ktw.1	+	1	538	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CTTCTTCTGTGAAATCCTGTC	0.557													46	114					0	0	0.003610	0	0
OR2A5	393046	broad.mit.edu	37	7	143748193	143748193	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:143748193C>A	uc011ktw.1	+	1	699	c.699C>A	c.(697-699)GGC>GGA	p.G233G		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CTGGGGAGGGCCGCAGAAAGG	0.617													30	81					2.61193e-14	4.52799e-14	0.001786	1	0
OR2A2	442361	broad.mit.edu	37	7	143806715	143806715	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:143806715C>T	uc011ktz.1	+	1	40	c.40C>T	c.(40-42)CTG>TTG	p.L14L		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CATCACCCTGCTGGGATTCCA	0.527													52	32					0	0	0.003610	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147844604	147844604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:147844604C>T	uc003weu.1	+	17	3092	c.2576C>T	c.(2575-2577)TCA>TTA	p.S859L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	859	Laminin G-like 3.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GTGTCCTTTTCATTTGATGTG	0.463										HNSCC(39;0.1)			46	145					0	0	0.003610	0	0
PDIA4	9601	broad.mit.edu	37	7	148702429	148702429	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:148702429G>A	uc003wff.2	-	9	1608	c.1326C>T	c.(1324-1326)GCC>GCT	p.A442A		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	442					cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			GGAAGTCCTTGGCCACCTCTA	0.577											OREG0018420	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	60					0	0	0.003330	0	0
ZNF786	136051	broad.mit.edu	37	7	148768999	148768999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:148768999G>A	uc003wfh.2	-	4	1002	c.865C>T	c.(865-867)CCG>TCG	p.P289S	ZNF786_uc011kuk.1_Missense_Mutation_p.P252S|ZNF786_uc003wfi.2_Missense_Mutation_p.P203S	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	289					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CCCTGCTGCGGGAGGCGGTGG	0.711													15	12					0	0	0.004990	0	0
KRBA1	84626	broad.mit.edu	37	7	149426454	149426454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:149426454C>T	uc003wfz.2	+	14	2203	c.1804C>T	c.(1804-1806)CCA>TCA	p.P602S	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_Intron|KRBA1_uc003wgb.2_Intron	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	602	Pro-rich.									ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GAGGTGGCTCCCAGAGGGTGA	0.607													6	3					0	0	0.003080	0	0
SSPO	23145	broad.mit.edu	37	7	149474909	149474909	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:149474909G>A	uc010lpk.2	+	5	708	c.708G>A	c.(706-708)GGG>GGA	p.G236G	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	236	VWFD 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TAACACCCGGGGACCGCTGCC	0.687													3	3					0	0	0.004672	0	0
SSPO	23145	broad.mit.edu	37	7	149492370	149492370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:149492370G>A	uc010lpk.2	+	43	6259	c.6259G>A	c.(6259-6261)GAA>AAA	p.E2087K		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2087	F5/8 type C.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCAGCAGCTGGAACACCCCAC	0.667													22	19					0	0	0.004656	0	0
GIMAP8	155038	broad.mit.edu	37	7	150163829	150163829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:150163829C>T	uc003whj.2	+	2	373	c.43C>T	c.(43-45)CTC>TTC	p.L15F		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	15	Poly-Leu.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GCGGCTCCTCCTCCTGGGAAA	0.493													16	63					0	0	0.003163	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164227	150164227	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:150164227C>T	uc003whj.2	+	2	771	c.441C>T	c.(439-441)TTC>TTT	p.F147F		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	147						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TGCAAGATTTCATTGAAAAAA	0.448													31	32					0	0	0.001786	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389501	150389501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:150389501C>T	uc003who.2	+	3	215	c.127C>T	c.(127-129)CTC>TTC	p.L43F	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	43						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAACAGCATCCTCAGGAAGCA	0.493													35	3					0	0	0.003271	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389737	150389737	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:150389737G>A	uc003who.2	+	3	451	c.363G>A	c.(361-363)CAG>CAA	p.Q121Q	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	121						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATACCTCACAGGACCAGCAGG	0.453													10	31					0	0	0.000978	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389963	150389963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:150389963G>A	uc003who.2	+	3	677	c.589G>A	c.(589-591)GAA>AAA	p.E197K	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	197						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCAAGTGAAGGAACTAATGGA	0.453													21	44					0	0	0.005443	0	0
TMEM176A	55365	broad.mit.edu	37	7	150499345	150499345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:150499345G>A	uc003whx.1	+	3	295	c.217G>A	c.(217-219)GGA>AGA	p.G73R	TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_5'Flank	NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	73	Helical; (Potential).					integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGTCCTAGGAGGATTTTTCTA	0.572													21	55					0	0	0.002780	0	0
ATG9B	285973	broad.mit.edu	37	7	150715447	150715447	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:150715447C>T	uc011kvc.1	-	7	1882	c.1806G>A	c.(1804-1806)GAG>GAA	p.E602E	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	602	Lumenal (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCCGGGCTCCTCCGGGAGGT	0.701											OREG0018444	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	23					0	0	0.000673	0	0
ABCB8	11194	broad.mit.edu	37	7	150733722	150733722	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:150733722C>T	uc003wil.3	+	10	1347	c.1254C>T	c.(1252-1254)TCC>TCT	p.S418S	ABCB8_uc003wii.2_Silent_p.S438S|ABCB8_uc003wij.3_Silent_p.S401S|ABCB8_uc010lpw.1_Missense_Mutation_p.P302S|ABCB8_uc010lpx.2_Silent_p.S401S|ABCB8_uc011kvd.1_Silent_p.S313S|ABCB8_uc003wim.3_Silent_p.S196S|ABCB8_uc003wik.3_Silent_p.S401S	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	418	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGTGGCCTCCCAGACAGTGC	0.632													16	48					0	0	0.000743	0	0
GALNTL5	168391	broad.mit.edu	37	7	151668105	151668105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:151668105G>A	uc003wkp.2	+	3	546	c.323G>A	c.(322-324)AGA>AAA	p.R108K	GALNTL5_uc003wkq.2_5'UTR|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_5'UTR	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	108	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		ATTATCAGTAGAAGCTTGGGC	0.299													16	56					0	0	0.001216	0	0
GALNTL5	168391	broad.mit.edu	37	7	151704932	151704932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:151704932G>A	uc003wkp.2	+	7	1152	c.929G>A	c.(928-930)GGA>GAA	p.G310E	GALNTL5_uc003wkq.2_Missense_Mutation_p.G61E|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.G199E	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	310	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		ATGTCTGGAGGAATTTTTGCT	0.328													64	51					0	0	0.003610	0	0
GALNTL5	168391	broad.mit.edu	37	7	151704934	151704934	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:151704934A>T	uc003wkp.2	+	7	1154	c.931A>T	c.(931-933)ATT>TTT	p.I311F	GALNTL5_uc003wkq.2_Missense_Mutation_p.I62F|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.I200F	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	311	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		GTCTGGAGGAATTTTTGCTAT	0.323													64	54					0	0	0.003610	0	0
CNPY1	285888	broad.mit.edu	37	7	155301617	155301617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:155301617G>A	uc003wmc.1	-	2	261	c.116C>T	c.(115-117)TCT>TTT	p.S39F		NM_001103176	NP_001096646	Q3B7I2	CNPY1_HUMAN	canopy 1 homolog	39											0	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		GTAAGCATCAGAATAAAAATA	0.368													19	65					0	0	0.001523	0	0
RBM33	155435	broad.mit.edu	37	7	155567706	155567706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:155567706C>T	uc010lqk.1	+	18	3852	c.3484C>T	c.(3484-3486)CAC>TAC	p.H1162Y	RBM33_uc003wmg.2_Missense_Mutation_p.H98Y	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	1162	RRM.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		AGATTTGTCCCACATAAATGT	0.478													26	49					0	0	0.001786	0	0
NOM1	64434	broad.mit.edu	37	7	156746968	156746968	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:156746968C>T	uc003wmy.2	+	3	1299	c.1284C>T	c.(1282-1284)ATC>ATT	p.I428I		NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	428	MIF4G.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		TAGTCAGCATCCTTCACCACA	0.498													24	23					0	0	0.003954	0	0
NOM1	64434	broad.mit.edu	37	7	156752583	156752583	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr7:156752583C>T	uc003wmy.2	+	4	1362	c.1347C>T	c.(1345-1347)TTC>TTT	p.F449F	NOM1_uc010lqp.1_5'Flank	NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	449	MIF4G.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		TGAGGAAGTTCGATGCCATCT	0.453													38	23					0	0	0.002522	0	0
OR4F21	441308	broad.mit.edu	37	8	116904	116904	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:116904C>A	uc011kwf.1	-	1	121	c.121G>T	c.(121-123)GGA>TGA	p.G41*		NM_001005504	NP_001005504	O95013	O4F21_HUMAN	olfactory receptor, family 4, subfamily F,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_cancers(2;8.42e-24)|all_epithelial(2;5.38e-15)|Lung NSC(2;2.68e-06)|all_lung(2;5.05e-06)|Ovarian(12;0.0731)|Colorectal(14;0.0785)|all_hematologic(2;0.157)|Myeloproliferative disorder(644;0.185)|all_neural(12;0.186)|Acute lymphoblastic leukemia(644;0.244)		Epithelial(5;5.01e-18)|all cancers(2;6.06e-17)|OV - Ovarian serous cystadenocarcinoma(5;8.27e-09)|BRCA - Breast invasive adenocarcinoma(11;1.63e-06)|Colorectal(2;5.31e-05)|READ - Rectum adenocarcinoma(2;0.0276)|COAD - Colon adenocarcinoma(149;0.0649)		AAGATGTTTCCAGTAATGCTT	0.468													15	332					0.00316338	0.00542876	0.003163	1	0
OR4F21	441308	broad.mit.edu	37	8	116933	116933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:116933G>A	uc011kwf.1	-	1	92	c.92C>T	c.(91-93)TCC>TTC	p.S31F		NM_001005504	NP_001005504	O95013	O4F21_HUMAN	olfactory receptor, family 4, subfamily F,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_cancers(2;8.42e-24)|all_epithelial(2;5.38e-15)|Lung NSC(2;2.68e-06)|all_lung(2;5.05e-06)|Ovarian(12;0.0731)|Colorectal(14;0.0785)|all_hematologic(2;0.157)|Myeloproliferative disorder(644;0.185)|all_neural(12;0.186)|Acute lymphoblastic leukemia(644;0.244)		Epithelial(5;5.01e-18)|all cancers(2;6.06e-17)|OV - Ovarian serous cystadenocarcinoma(5;8.27e-09)|BRCA - Breast invasive adenocarcinoma(11;1.63e-06)|Colorectal(2;5.31e-05)|READ - Rectum adenocarcinoma(2;0.0276)|COAD - Colon adenocarcinoma(149;0.0649)		GAGCACAGAGGAAAACACTAG	0.473													178	14					0	0	0.003610	0	0
CSMD1	64478	broad.mit.edu	37	8	2813223	2813223	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:2813223G>A	uc011kwk.1	-	64	10275	c.9885C>T	c.(9883-9885)TTC>TTT	p.F3295F	CSMD1_uc011kwj.1_Silent_p.F2624F|CSMD1_uc010lrg.2_Silent_p.F1186F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3295	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGTGTAGCCGAAAGTAGGAA	0.502													77	22					0	0	0.003610	0	0
CSMD1	64478	broad.mit.edu	37	8	2949063	2949063	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:2949063C>T	uc011kwk.1	-	48	7653	c.7263G>A	c.(7261-7263)AAG>AAA	p.K2421K	CSMD1_uc011kwj.1_Silent_p.K1750K|CSMD1_uc010lrg.2_Silent_p.K489K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2421	CUB 14.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGAATCCTTTCTTACTGGTGG	0.333													31	11					0	0	0.005524	0	0
CSMD1	64478	broad.mit.edu	37	8	3200966	3200966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:3200966C>T	uc011kwk.1	-	23	3874	c.3484G>A	c.(3484-3486)GAT>AAT	p.D1162N	CSMD1_uc011kwj.1_Missense_Mutation_p.D554N|CSMD1_uc003wqe.2_Missense_Mutation_p.D318N	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1162	Extracellular (Potential).|CUB 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCTTTTCCATCATATACCTGA	0.418													19	3					0	0	0.000743	0	0
CSMD1	64478	broad.mit.edu	37	8	3265514	3265514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:3265514G>A	uc011kwk.1	-	14	2371	c.1981C>T	c.(1981-1983)CCT>TCT	p.P661S	CSMD1_uc011kwj.1_Missense_Mutation_p.P53S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	661	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGCTGGGAAGGCACTTCATTG	0.458													14	3					0	0	0.002450	0	0
DEFA5	1670	broad.mit.edu	37	8	6912991	6912991	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:6912991C>T	uc003wra.1	-	2	287	c.247G>A	c.(247-249)GAA>AAA	p.E83K		NM_021010	NP_066290	Q01523	DEF5_HUMAN	defensin, alpha 5 preproprotein	83					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		CCACTGATTTCACACACCCCG	0.527													19	3					0	0	0.002780	0	0
PRSS55	203074	broad.mit.edu	37	8	10389019	10389019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:10389019G>A	uc003wta.2	+	3	577	c.562G>A	c.(562-564)GAA>AAA	p.E188K	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	188	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CACATGGCGCGAATGCTGGGT	0.607													31	15					0	0	0.002096	0	0
RP1L1	94137	broad.mit.edu	37	8	10467557	10467557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:10467557C>T	uc003wtc.2	-	4	4280	c.4051G>A	c.(4051-4053)GAA>AAA	p.E1351K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1351					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		gcctcttcttcttgctgtcct	0.149													45	4					0	0	0.001951	0	0
XKR6	286046	broad.mit.edu	37	8	10755694	10755694	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:10755694A>G	uc003wtk.1	-	3	1721	c.1694T>C	c.(1693-1695)GTG>GCG	p.V565A		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	565						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		CATGGGTCTCACTTGGAAAAC	0.587													39	7					0	0	0.002222	0	0
XKR6	286046	broad.mit.edu	37	8	11058138	11058138	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:11058138G>A	uc003wtk.1	-	1	738	c.711C>T	c.(709-711)TCC>TCT	p.S237S		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	237						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		AGATCCACACGGAGAGGCGAC	0.746													13	4					0	0	0.004007	0	0
SGCZ	137868	broad.mit.edu	37	8	14412322	14412322	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:14412322G>A	uc003wwq.2	-	2	813	c.153C>T	c.(151-153)TTC>TTT	p.F51F	SGCZ_uc010lss.2_Silent_p.F38F	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	38	Helical; Signal-anchor for type II membrane protein; (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		GAAGGACAAAGAAGTATAAGC	0.383													109	19					0	0	0.003610	0	0
TUSC3	7991	broad.mit.edu	37	8	15508318	15508318	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:15508318C>T	uc003wwt.2	+	3	631	c.421C>T	c.(421-423)CAG>TAG	p.Q141*	TUSC3_uc003wwr.2_Nonsense_Mutation_p.Q141*|TUSC3_uc003wws.2_Nonsense_Mutation_p.Q141*|TUSC3_uc003wwu.2_Nonsense_Mutation_p.Q141*|TUSC3_uc003wwv.2_Nonsense_Mutation_p.Q141*|TUSC3_uc003www.2_Nonsense_Mutation_p.Q141*|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Nonsense_Mutation_p.Q141*	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	141					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		AGACGTTTTTCAGCAGGTAAA	0.338													78	20					0	0	0.003610	0	0
MTMR7	9108	broad.mit.edu	37	8	17230708	17230708	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:17230708T>A	uc003wxm.2	-	2	305	c.66A>T	c.(64-66)AAA>AAT	p.K22N		NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	22							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		CTAGAGCTGCTTTTTTAGGAG	0.393													23	7					0	0	0.004656	0	0
MTUS1	57509	broad.mit.edu	37	8	17503462	17503462	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:17503462G>A	uc003wxv.2	-	15	4260	c.3786C>T	c.(3784-3786)TTC>TTT	p.F1262F	MTUS1_uc003wxt.2_Silent_p.F509F|MTUS1_uc011kyg.1_Silent_p.F407F|MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Silent_p.F1208F|MTUS1_uc003wxs.2_Silent_p.F428F	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	1262						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		TGGGGCTAGGGAAGGAGCCCG	0.552													24	3					0	0	0.001061	0	0
FGL1	2267	broad.mit.edu	37	8	17743010	17743010	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:17743010C>T	uc003wxx.2	-	3	378	c.54G>A	c.(52-54)AGG>AGA	p.R18R	FGL1_uc003wxy.2_Silent_p.R18R|FGL1_uc003wxz.2_Silent_p.R18R|FGL1_uc003wya.2_Silent_p.R18R|FGL1_uc003wyb.2_Silent_p.R18R|FGL1_uc003wyc.2_Silent_p.R18R|FGL1_uc003wyd.2_RNA|FGL1_uc003wye.2_Silent_p.R68R|FGL1_uc003wyf.2_Intron	NM_201553	NP_963847	Q08830	FGL1_HUMAN	fibrinogen-like 1 precursor	18					signal transduction	fibrinogen complex	receptor binding				0				Colorectal(111;0.0573)|COAD - Colon adenocarcinoma(73;0.215)		CCGAAATTTCCCTGCCCATTG	0.353													28	12					0	0	0.003271	0	0
SLC18A1	6570	broad.mit.edu	37	8	20004780	20004780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:20004780C>T	uc011kyq.1	-	16	1924	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	SLC18A1_uc003wzl.2_Missense_Mutation_p.E272K|SLC18A1_uc003wzm.2_Missense_Mutation_p.E485K|SLC18A1_uc011kyr.1_Intron|SLC18A1_uc003wzn.2_Missense_Mutation_p.E453K|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.E453K	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	485	Cytoplasmic (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		AGCTTCTCTTCCTTTGCCGGG	0.488													16	7					0	0	0.000958	0	0
LGI3	203190	broad.mit.edu	37	8	22005901	22005901	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:22005901G>A	uc003xav.2	-	8	1708	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F	LGI3_uc010ltu.2_Silent_p.F449F	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	473	EAR 6.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		CACCCACAAGGAAGGGCTGCA	0.642													14	0					0	0	0.003163	0	0
PDLIM2	64236	broad.mit.edu	37	8	22442629	22442629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:22442629C>T	uc003xby.2	+	5	815	c.415C>T	c.(415-417)CCA>TCA	p.P139S	PDLIM2_uc003xbx.1_Missense_Mutation_p.P139S|PDLIM2_uc003xbz.2_Missense_Mutation_p.P139S|PDLIM2_uc003xca.2_Missense_Mutation_p.P139S|PDLIM2_uc003xcb.2_Missense_Mutation_p.P139S|PDLIM2_uc003xcc.1_Missense_Mutation_p.P139S	NM_021630	NP_067643	Q96JY6	PDLI2_HUMAN	PDZ and LIM domain 2 isoform 2	139	Ser-rich.					actin cytoskeleton|cell surface|cytoplasm|focal adhesion|nucleus	zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00579)|Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0626)		CTTCTCACCACCACCCTCTAG	0.647													47	11					0	0	0.003610	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23059372	23059372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:23059372C>T	uc003xda.2	-	4	643	c.578G>A	c.(577-579)GGA>GAA	p.G193E		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	193	TNFR-Cys 3.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		CCGGAAAGTTCCTGGTTTGCA	0.517													37	11					0	0	0.003610	0	0
SLC25A37	51312	broad.mit.edu	37	8	23429014	23429014	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:23429014C>T	uc003xdo.2	+	4	816	c.663C>T	c.(661-663)TTC>TTT	p.F221F	SLC25A37_uc003xdp.2_RNA|SLC25A37_uc010ltz.2_RNA|SLC25A37_uc003xdq.2_RNA|SLC25A37_uc003xdr.1_RNA|uc003xds.2_5'Flank	NM_016612	NP_057696	Q9NYZ2	MFRN1_HUMAN	solute carrier family 25, member 37	221	Solcar 2.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Prostate(55;0.114)		Colorectal(74;0.0198)|COAD - Colon adenocarcinoma(73;0.0751)		CCTATGAGTTCCTGCAGGAGC	0.657													23	4					0	0	0.003954	0	0
ADAM28	10863	broad.mit.edu	37	8	24170995	24170995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:24170995C>T	uc003xdy.2	+	6	561	c.478C>T	c.(478-480)CCT>TCT	p.P160S	ADAM28_uc003xdx.2_Missense_Mutation_p.P160S|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	160					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CAAGTATAACCCTGATGAAAA	0.473													53	12					0	0	0.003610	0	0
ADAM28	10863	broad.mit.edu	37	8	24187543	24187543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:24187543G>A	uc003xdy.2	+	11	1101	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	ADAM28_uc003xdx.2_Missense_Mutation_p.E340K|ADAM28_uc011kzz.1_Missense_Mutation_p.E107K|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.E27K	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	340	Peptidase M12B.|Extracellular (Potential).	By similarity.			proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AATGGCACATGAAATGGGCCA	0.408													56	14					0	0	0.003610	0	0
NEFM	4741	broad.mit.edu	37	8	24776021	24776021	+	Missense_Mutation	SNP	G	A	A	rs150229714		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:24776021G>A	uc003xed.3	+	3	2686	c.2653G>A	c.(2653-2655)GAG>AAG	p.E885K	NEFM_uc011lac.1_Missense_Mutation_p.E667K|NEFM_uc010lue.2_Missense_Mutation_p.E509K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	885	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		AAAGGTTGAAGAGCATGAAGA	0.428													84	17					0	0	0.003610	0	0
EBF2	64641	broad.mit.edu	37	8	25715958	25715958	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:25715958G>C	uc003xes.1	-	14	1422	c.1405C>G	c.(1405-1407)CAG>GAG	p.Q469E	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	469	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		TAATTAGACTGTTGAGGCGTG	0.502													3	61					0	0	0.000248	0	0
EBF2	64641	broad.mit.edu	37	8	25899710	25899710	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:25899710T>A	uc003xes.1	-	2	206	c.189A>T	c.(187-189)AAA>AAT	p.K63N	PPP2R2A_uc003xek.2_Intron|EBF2_uc003xet.1_Missense_Mutation_p.K63N	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	63	Interaction with DNA (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AGAAGTTGGATTTCCTCAAGT	0.582													20	6					0	0	0.000958	0	0
SCARA5	286133	broad.mit.edu	37	8	27764708	27764708	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:27764708C>T	uc003xgj.2	-	6	1493	c.1053G>A	c.(1051-1053)GGG>GGA	p.G351G	SCARA5_uc010luz.2_Silent_p.G126G|SCARA5_uc003xgk.2_Silent_p.G308G|SCARA5_uc003xgl.2_Silent_p.G351G	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	351	Collagen-like.|Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		CCCCCAGCTTCCCATCATCGC	0.562													60	18					0	0	0.003610	0	0
ELP3	55140	broad.mit.edu	37	8	28017869	28017869	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:28017869T>A	uc003xgo.3	+	13	1529	c.1381T>A	c.(1381-1383)TTC>ATC	p.F461I	ELP3_uc003xgn.3_Missense_Mutation_p.F446I|ELP3_uc011laq.1_Missense_Mutation_p.F389I|ELP3_uc011lar.1_Missense_Mutation_p.F369I|ELP3_uc011las.1_Missense_Mutation_p.F342I|ELP3_uc011lat.1_Missense_Mutation_p.F342I	NM_018091	NP_060561	Q9H9T3	ELP3_HUMAN	elongation protein 3 homolog	461	N-acetyltransferase.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	histone acetyltransferase activity|iron-sulfur cluster binding|metal ion binding|phosphorylase kinase regulator activity|protein binding				0		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.151)|Colorectal(74;0.183)		AGAAGAAACTTTCCGTTTCGA	0.473													33	9					0	0	0.002836	0	0
KCNU1	157855	broad.mit.edu	37	8	36776396	36776396	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:36776396C>T	uc010lvw.2	+	23	2664	c.2577C>T	c.(2575-2577)GTC>GTT	p.V859V	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	859	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		GCCGAAAAGTCCCTATCCTTA	0.363													81	14					0	0	0.003610	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37732590	37732590	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:37732590G>A	uc003xkm.1	-	3	1109	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	RAB11FIP1_uc010lvz.1_Silent_p.F203F|RAB11FIP1_uc003xkn.1_Silent_p.F355F|RAB11FIP1_uc003xkl.1_5'Flank|RAB11FIP1_uc003xko.1_5'Flank|RAB11FIP1_uc003xkp.1_Silent_p.F203F	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	355					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CTGTAGAAGAGAACAAATGCT	0.557													122	22					0	0	0.003610	0	0
GOT1L1	137362	broad.mit.edu	37	8	37794896	37794896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:37794896C>T	uc011lbj.1	-	4	518	c.418G>A	c.(418-420)GGA>AGA	p.G140R		NM_152413	NP_689626	Q8NHS2	AATC2_HUMAN	glutamic-oxaloacetic transaminase 1-like 1	140					biosynthetic process|cellular amino acid metabolic process	cytoplasm	pyridoxal phosphate binding|transaminase activity			ovary(1)	1	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;1.37e-11)			AAGACGAGTCCATGCAGTTCT	0.537													5	1					0	0	0.001168	0	0
ADAM18	8749	broad.mit.edu	37	8	39468050	39468050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:39468050G>A	uc003xni.2	+	6	347	c.347G>A	c.(346-348)GGA>GAA	p.G116E	ADAM18_uc003xnh.2_Missense_Mutation_p.G116E|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Missense_Mutation_p.G116E	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	116					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ATTTTCAGGGGATTTCTCCAG	0.269													28	5					0	0	0.001271	0	0
ADAM18	8749	broad.mit.edu	37	8	39502881	39502881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:39502881G>A	uc003xni.2	+	11	934	c.934G>A	c.(934-936)GGA>AGA	p.G312R	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.G288R	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	312	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AGGTTTGGAGGGATTTTCGGT	0.313													62	16					0	0	0.003610	0	0
ADAM2	2515	broad.mit.edu	37	8	39682404	39682404	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:39682404G>A	uc003xnj.2	-	4	276	c.201C>T	c.(199-201)CCC>CCT	p.P67P	ADAM2_uc003xnk.2_Silent_p.P67P|ADAM2_uc011lck.1_Silent_p.P67P|ADAM2_uc003xnl.2_Silent_p.P67P	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	67					cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TAAAATTATGGGGTAAAAAGT	0.264													41	12					0	0	0.002522	0	0
IDO1	3620	broad.mit.edu	37	8	39780107	39780107	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:39780107C>T	uc003xnm.2	+	6	588	c.474C>T	c.(472-474)GAC>GAT	p.D158D	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	158					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	GTGATGGAGACTGCAGTAAAG	0.368													41	10					0	0	0.003610	0	0
ANK1	286	broad.mit.edu	37	8	41552234	41552234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:41552234C>T	uc003xok.2	-	28	3287	c.3203G>A	c.(3202-3204)CGG>CAG	p.R1068Q	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.R384Q|ANK1_uc003xoi.2_Missense_Mutation_p.R1068Q|ANK1_uc003xoj.2_Missense_Mutation_p.R1068Q|ANK1_uc003xol.2_Missense_Mutation_p.R1068Q|ANK1_uc003xom.2_Missense_Mutation_p.R1109Q	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1068					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CTGGCAGAGCCGTGACATGAT	0.597													25	9					0	0	0.004656	0	0
MYST3	7994	broad.mit.edu	37	8	41790311	41790311	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:41790311G>A	uc010lxb.2	-	18	5971	c.5427C>T	c.(5425-5427)ACC>ACT	p.T1809T	MYST3_uc010lxc.2_Silent_p.T1809T|MYST3_uc003xon.3_Silent_p.T1809T	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1809					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GTGGCGTCATGGTGGCTTGTG	0.532													54	17					0	0	0.003610	0	0
CHRNB3	1142	broad.mit.edu	37	8	42586887	42586887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:42586887C>T	uc003xpi.1	+	5	565	c.437C>T	c.(436-438)CCC>CTC	p.P146L		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	146	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TGGACCCCTCCCGCCAGCTAC	0.532													31	6					0	0	0.001512	0	0
RNF170	81790	broad.mit.edu	37	8	42725192	42725192	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:42725192G>A	uc003xpo.2	-	4	754	c.277C>T	c.(277-279)CAA>TAA	p.Q93*	RNF170_uc011lcx.1_Nonsense_Mutation_p.Q93*|RNF170_uc010lxp.2_Nonsense_Mutation_p.Q9*|RNF170_uc003xpm.2_Nonsense_Mutation_p.Q93*|RNF170_uc003xpp.2_Silent_p.T21T|RNF170_uc003xpn.2_Silent_p.T21T|RNF170_uc003xpq.3_Nonsense_Mutation_p.Q93*	NM_001160223	NP_001153695	Q96K19	RN170_HUMAN	ring finger protein 170 isoform a	93	RING-type.					integral to membrane	zinc ion binding				0	all_lung(13;1.25e-11)|Lung NSC(13;3.55e-10)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00645)|Lung NSC(58;0.0176)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			AAGGAGGCTTGGTGCAGGCAG	0.483													49	12					0	0	0.003610	0	0
KIAA0146	23514	broad.mit.edu	37	8	48626126	48626126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:48626126C>T	uc003xqd.2	+	16	2273	c.2264C>T	c.(2263-2265)TCC>TTC	p.S755F	KIAA0146_uc011ldc.1_Missense_Mutation_p.S685F|KIAA0146_uc011ldd.1_Missense_Mutation_p.S695F|KIAA0146_uc003xqe.2_Missense_Mutation_p.S230F|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc010lxt.2_Missense_Mutation_p.S444F|KIAA0146_uc011ldf.1_Missense_Mutation_p.S260F|KIAA0146_uc011ldg.1_Missense_Mutation_p.S245F|KIAA0146_uc003xqg.1_RNA	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	755											0		Lung NSC(58;0.175)				GGTGCAAGTTCCTGTGAGCTG	0.537													21	45					0	0	0.001882	0	0
PXDNL	137902	broad.mit.edu	37	8	52321172	52321172	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:52321172G>A	uc003xqu.3	-	17	3113	c.3012C>T	c.(3010-3012)ATC>ATT	p.I1004I	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1004					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCGCGCCCACGATCTTCCTGG	0.622													12	3					0	0	0.001368	0	0
PXDNL	137902	broad.mit.edu	37	8	52387679	52387680	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:52387679_52387680CC>TT	uc003xqu.3	-	7	647_648	c.546_547GG>AA	c.(544-549)CTGGTT>CTAATT	p.V183I		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	183	LRRCT.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CAGTCACAAACCAGGGCGTTGG	0.48													28	13					0	0	0.004672	0	0
ST18	9705	broad.mit.edu	37	8	53045668	53045668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:53045668C>T	uc003xqz.2	-	16	2549	c.2393G>A	c.(2392-2394)GGT>GAT	p.G798D	ST18_uc011ldq.1_Missense_Mutation_p.G445D|ST18_uc011ldr.1_Missense_Mutation_p.G763D|ST18_uc011lds.1_Missense_Mutation_p.G703D|ST18_uc003xra.2_Missense_Mutation_p.G798D	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	798						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TTTGACACCACCTTTCCTTGC	0.468													61	53					0	0	0.003610	0	0
RB1CC1	9821	broad.mit.edu	37	8	53573503	53573503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:53573503G>A	uc003xre.3	-	11	2168	c.1610C>T	c.(1609-1611)TCC>TTC	p.S537F	RB1CC1_uc003xrf.3_Missense_Mutation_p.S537F	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	537					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				TTTCCCAAAGGATTCCCTTTT	0.294													18	16					0	0	0.000743	0	0
OPRK1	4986	broad.mit.edu	37	8	54142099	54142099	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:54142099T>A	uc003xrh.1	-	3	1276	c.901A>T	c.(901-903)AGC>TGC	p.S301C	OPRK1_uc003xri.1_Missense_Mutation_p.S301C|OPRK1_uc010lyc.1_Missense_Mutation_p.S212C	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	301	Extracellular (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	TGGGAGGTGCTCCCCAGAGCC	0.542													10	31					0	0	0.001368	0	0
OPRK1	4986	broad.mit.edu	37	8	54147659	54147659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:54147659C>T	uc003xrh.1	-	2	645	c.270G>A	c.(268-270)ATG>ATA	p.M90I	OPRK1_uc003xri.1_Missense_Mutation_p.M90I|OPRK1_uc010lyc.1_Missense_Mutation_p.M1I	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	90	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	TTGCTGTCTTCATCTTTGTGT	0.373													45	54					0	0	0.002852	0	0
RP1	6101	broad.mit.edu	37	8	55537550	55537550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:55537550C>T	uc003xsd.1	+	4	1256	c.1108C>T	c.(1108-1110)CCA>TCA	p.P370S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	370					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GATGAGTTTTCCAGGAAGAAC	0.398													35	24					0	0	0.002836	0	0
RP1	6101	broad.mit.edu	37	8	55542638	55542638	+	Missense_Mutation	SNP	G	A	A	rs149282954	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:55542638G>A	uc003xsd.1	+	4	6344	c.6196G>A	c.(6196-6198)GAT>AAT	p.D2066N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2066					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TAAAGCAGTCGATGAGAATAA	0.338													28	20					0	0	0.005443	0	0
XKR4	114786	broad.mit.edu	37	8	56270245	56270245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:56270245C>T	uc003xsf.2	+	2	846	c.814C>T	c.(814-816)CAC>TAC	p.H272Y		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	272						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TAGATATTTCCACACAATATA	0.383													33	27					0	0	0.002836	0	0
XKR4	114786	broad.mit.edu	37	8	56270281	56270281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:56270281G>A	uc003xsf.2	+	2	882	c.850G>A	c.(850-852)GGG>AGG	p.G284R		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	284						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CCGACAGAGTGGGGAGAATGA	0.388													35	51					0	0	0.003214	0	0
XKR4	114786	broad.mit.edu	37	8	56436024	56436024	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:56436024C>T	uc003xsf.2	+	3	1223	c.1191C>T	c.(1189-1191)TTC>TTT	p.F397F		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	397	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CCTCGGTTTTCCAGCTGTACT	0.512													90	75					0	0	0.003610	0	0
MOS	4342	broad.mit.edu	37	8	57025559	57025559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:57025559C>T	uc011leb.1	-	1	983	c.983G>A	c.(982-984)AGG>AAG	p.R328K		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	328	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			CGCGCTCGGCCTCTGCGCCGC	0.607													28	16					0	0	0.001061	0	0
PENK	5179	broad.mit.edu	37	8	57354100	57354100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:57354100C>T	uc003xsz.2	-	2	616	c.535G>A	c.(535-537)GAG>AAG	p.E179K	PENK_uc003xta.3_Missense_Mutation_p.E179K	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	179					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			ACTTCTTCCTCATTATCACTG	0.532													79	67					0	0	0.003610	0	0
NSMAF	8439	broad.mit.edu	37	8	59548091	59548091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:59548091G>A	uc003xtt.2	-	3	378	c.164C>T	c.(163-165)TCC>TTC	p.S55F	NSMAF_uc011lee.1_Missense_Mutation_p.S86F|NSMAF_uc003xtu.2_Missense_Mutation_p.S55F	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	55					ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				TATTTTTAAGGAGCCTCTGAT	0.323													55	151					0	0	0.003610	0	0
CA8	767	broad.mit.edu	37	8	61178561	61178561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:61178561C>T	uc003xtz.1	-	3	588	c.340G>A	c.(340-342)GAA>AAA	p.E114K	CA8_uc003xua.1_Missense_Mutation_p.E114K|CA8_uc003xub.2_Missense_Mutation_p.E114K	NM_004056	NP_004047	P35219	CAH8_HUMAN	carbonic anhydrase VIII	114					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0		all_cancers(86;0.172)|all_epithelial(80;0.0383)|all_lung(136;0.0413)|Lung NSC(129;0.0474)				AATCTCACTTCGTACAGTTCA	0.403													20	24					0	0	0.001216	0	0
CLVS1	157807	broad.mit.edu	37	8	62370915	62370915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:62370915C>T	uc003xuh.2	+	5	1115	c.791C>T	c.(790-792)CCT>CTT	p.P264L	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Intron	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	264	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CTAATACACCCTGAATTTTTG	0.413													35	92					0	0	0.002522	0	0
NKAIN3	286183	broad.mit.edu	37	8	63492222	63492222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:63492222G>A	uc010lyq.1	+	2	311	c.179G>A	c.(178-180)CGA>CAA	p.R60Q		NM_173688	NP_775959	Q8N8D7	NKAI3_HUMAN	Na+/K+ transporting ATPase interacting 3	60						integral to membrane|plasma membrane					0	Breast(64;0.127)	Lung NSC(129;0.187)				TACAGACCTCGATACATAATG	0.323													34	53					0	0	0.003271	0	0
NKAIN3	286183	broad.mit.edu	37	8	63902730	63902730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:63902730C>T	uc010lyq.1	+	6	668	c.536C>T	c.(535-537)TCA>TTA	p.S179L		NM_173688	NP_775959	Q8N8D7	NKAI3_HUMAN	Na+/K+ transporting ATPase interacting 3	179						integral to membrane|plasma membrane					0	Breast(64;0.127)	Lung NSC(129;0.187)				ttctcagattcatgtgatctg	0.104													6	7					0	0	0.003080	0	0
GGH	8836	broad.mit.edu	37	8	63948262	63948262	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:63948262G>A	uc003xuw.2	-	2	460	c.177C>T	c.(175-177)TCC>TCT	p.S59S		NM_003878	NP_003869	Q92820	GGH_HUMAN	gamma-glutamyl hydrolase precursor	59	Gamma-glutamyl hydrolase.				glutamine metabolic process	extracellular space|lysosome|melanosome	gamma-glutamyl-peptidase activity				0	Breast(64;0.0716)	all_cancers(86;0.189)|Lung NSC(129;0.0324)|all_lung(136;0.0593)|all_epithelial(80;0.131)			Folic Acid(DB00158)|L-Glutamic Acid(DB00142)	ACTTTACATAGGACGCAGCAA	0.313													34	94					0	0	0.002522	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66963846	66963846	+	Missense_Mutation	SNP	G	A	A	rs141686243		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:66963846G>A	uc003xvs.1	+	3	355	c.64G>A	c.(64-66)GAA>AAA	p.E22K	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	22	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			AGCTCTATACGAAATTCTTGG	0.398													62	31					0	0	0.003610	0	0
CRH	1392	broad.mit.edu	37	8	67089270	67089271	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:67089270_67089271GG>AA	uc003xvy.1	-	2	627_628	c.442_443CC>TT	c.(442-444)CCG>TTG	p.P148L		NM_000756	NP_000747	P06850	CRF_HUMAN	corticotropin releasing hormone precursor	148					female pregnancy|negative regulation of circadian sleep/wake cycle, REM sleep|parturition|positive regulation of circadian sleep/wake cycle, wakefulness|positive regulation of cortisol secretion|signal transduction|synaptic transmission	extracellular region|soluble fraction	neuropeptide hormone activity				0		all_cancers(86;2.58e-06)|all_epithelial(80;6.27e-09)|all_lung(136;0.000414)|Lung NSC(129;0.0011)	Epithelial(68;0.0136)|all cancers(69;0.0507)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)		Corticotropin(DB01285)	TTCTCTCTCCGGTGCCTCCTGG	0.678											OREG0018805	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	9					0	0	0.004672	0	0
SGK3	23678	broad.mit.edu	37	8	67759428	67759428	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:67759428C>G	uc003xwr.2	+	15	1374	c.1075C>G	c.(1075-1077)CCT>GCT	p.P359A	SGK3_uc003xwp.2_Missense_Mutation_p.P353A|SGK3_uc003xwt.2_Missense_Mutation_p.P359A|SGK3_uc003xwu.2_Missense_Mutation_p.P327A	NM_001033578	NP_001028750	Q96BR1	SGK3_HUMAN	serum/glucocorticoid regulated kinase 3 isoform	359	Protein kinase.				cell communication|response to stress	cytoplasmic membrane-bounded vesicle|early endosome	ATP binding|phosphatidylinositol binding|protein serine/threonine kinase activity			ovary(1)|large_intestine(1)|lung(1)|breast(1)	4	Breast(64;0.186)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0046)|OV - Ovarian serous cystadenocarcinoma(28;0.0112)|all cancers(69;0.0141)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TTTTTTCCAGCCTCCTTTTTA	0.383													16	88					0	0	0.001216	0	0
PREX2	80243	broad.mit.edu	37	8	69058566	69058566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:69058566C>T	uc003xxv.1	+	34	4237	c.4210C>T	c.(4210-4212)CAT>TAT	p.H1404Y		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1404					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GTTTAAAATTCATCCTGTTCT	0.318													42	34					0	0	0.002222	0	0
PREX2	80243	broad.mit.edu	37	8	69069575	69069575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:69069575G>A	uc003xxv.1	+	35	4277	c.4250G>A	c.(4249-4251)GGA>GAA	p.G1417E		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1417					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGCATGGAAGGATATTATTAC	0.343													22	19					0	0	0.002299	0	0
SULF1	23213	broad.mit.edu	37	8	70517105	70517105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:70517105G>A	uc010lza.1	+	13	2032	c.1315G>A	c.(1315-1317)GAA>AAA	p.E439K	SULF1_uc003xyd.2_Missense_Mutation_p.E439K|SULF1_uc003xye.2_Missense_Mutation_p.E439K|SULF1_uc003xyf.2_Missense_Mutation_p.E439K|SULF1_uc003xyg.2_Missense_Mutation_p.E439K|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	439					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GCCCAAATATGAACGGGTCAA	0.473													81	41					0	0	0.003610	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70667774	70667774	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:70667774C>T	uc003xyl.2	-	4	1850	c.1143G>A	c.(1141-1143)AAG>AAA	p.K381K	SLCO5A1_uc010lzb.2_Silent_p.K381K|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Silent_p.K381K|SLCO5A1_uc010lzc.2_Silent_p.K381K	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	381	Cytoplasmic (Potential).|Poly-Lys.					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			AAAATTTTTTCTTTTTCTTTT	0.378													20	61					0	0	0.001882	0	0
KCNB2	9312	broad.mit.edu	37	8	73480462	73480462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:73480462G>A	uc003xzb.2	+	2	1081	c.493G>A	c.(493-495)GAA>AAA	p.E165K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	165	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GCGAGAAGGAGAAGAGTTTGA	0.458													45	156					0	0	0.003610	0	0
KCNB2	9312	broad.mit.edu	37	8	73848499	73848500	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:73848499_73848500CC>TT	uc003xzb.2	+	3	1497_1498	c.909_910CC>TT	c.(907-912)TTCCGA>TTTTGA	p.R304*		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	304	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TCCAGATCTTCCGAATCATGCG	0.525													22	41					0	0	0.004672	0	0
KCNB2	9312	broad.mit.edu	37	8	73848771	73848772	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:73848771_73848772GG>AA	uc003xzb.2	+	3	1769_1770	c.1181_1182GG>AA	c.(1180-1182)GGG>GAA	p.G394E		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	394					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACATTACTAGGGAAAATTGTGG	0.441													45	41					0	0	0.004672	0	0
KCNB2	9312	broad.mit.edu	37	8	73850006	73850006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:73850006G>A	uc003xzb.2	+	3	3004	c.2416G>A	c.(2416-2418)GAA>AAA	p.E806K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	806	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GAGCTTCACTGAAATAGATAC	0.527													14	43					0	0	0.002450	0	0
LY96	23643	broad.mit.edu	37	8	74903690	74903690	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:74903690C>T	uc003yad.2	+	1	104	c.13C>T	c.(13-15)CTG>TTG	p.L5L		NM_015364	NP_056179	Q9Y6Y9	LY96_HUMAN	MD-2 protein precursor	5					cellular defense response|detection of lipopolysaccharide|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	extracellular space|lipopolysaccharide receptor complex|plasma membrane	coreceptor activity|lipopolysaccharide receptor activity|protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0208)|BRCA - Breast invasive adenocarcinoma(89;0.0499)|all cancers(69;0.0619)			GTTACCATTTCTGTTTTTTTC	0.368													49	55					0	0	0.003610	0	0
LY96	23643	broad.mit.edu	37	8	74922334	74922334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:74922334G>A	uc003yad.2	+	3	392	c.301G>A	c.(301-303)GAT>AAT	p.D101N		NM_015364	NP_056179	Q9Y6Y9	LY96_HUMAN	MD-2 protein precursor	101					cellular defense response|detection of lipopolysaccharide|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	extracellular space|lipopolysaccharide receptor complex|plasma membrane	coreceptor activity|lipopolysaccharide receptor activity|protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0208)|BRCA - Breast invasive adenocarcinoma(89;0.0499)|all cancers(69;0.0619)			ATCTGATGACGATTACTCTTT	0.313													58	40					0	0	0.003610	0	0
HNF4G	3174	broad.mit.edu	37	8	76471221	76471221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:76471221C>T	uc003yaq.2	+	9	1201	c.931C>T	c.(931-933)CTT>TTT	p.L311F	HNF4G_uc003yar.2_Missense_Mutation_p.L348F	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	311					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			GTTTGTTAAACTTTTTGGGAT	0.398													59	62					0	0	0.003610	0	0
HNF4G	3174	broad.mit.edu	37	8	76471257	76471257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:76471257G>A	uc003yaq.2	+	9	1237	c.967G>A	c.(967-969)GAA>AAA	p.E323K	HNF4G_uc003yar.2_Missense_Mutation_p.E360K	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	323					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			TCTACTTCAGGAAATGCTATT	0.338													45	81					0	0	0.002522	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617118	77617118	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:77617118C>T	uc003yav.2	+	2	1182	c.795C>T	c.(793-795)TTC>TTT	p.F265F	ZFHX4_uc003yat.1_Silent_p.F265F|ZFHX4_uc003yau.1_Silent_p.F265F|ZFHX4_uc003yaw.1_Silent_p.F265F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	265						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGTCCAAATTCGATGGTTGTG	0.423										HNSCC(33;0.089)			23	61					0	0	0.002299	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617514	77617514	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:77617514G>A	uc003yav.2	+	2	1578	c.1191G>A	c.(1189-1191)GGG>GGA	p.G397G	ZFHX4_uc003yat.1_Silent_p.G397G|ZFHX4_uc003yau.1_Silent_p.G397G|ZFHX4_uc003yaw.1_Silent_p.G397G	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	397						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AGCCGCTGGGGATTACCCAAA	0.532										HNSCC(33;0.089)			20	28					0	0	0.001523	0	0
ZFHX4	79776	broad.mit.edu	37	8	77763207	77763207	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:77763207G>A	uc003yav.2	+	10	4302	c.3915G>A	c.(3913-3915)CCG>CCA	p.P1305P	ZFHX4_uc003yau.1_Silent_p.P1350P|ZFHX4_uc003yaw.1_Silent_p.P1305P	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1305						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AGCAGAAACCGACTAAAGAAC	0.398										HNSCC(33;0.089)			14	33					0	0	0.001855	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766752	77766752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:77766752C>T	uc003yav.2	+	10	7847	c.7460C>T	c.(7459-7461)CCC>CTC	p.P2487L	ZFHX4_uc003yau.1_Missense_Mutation_p.P2532L|ZFHX4_uc003yaw.1_Missense_Mutation_p.P2487L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2487						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TTGGAAAGGCCCATGGACATG	0.527										HNSCC(33;0.089)			38	101					0	0	0.001287	0	0
ZFHX4	79776	broad.mit.edu	37	8	77776180	77776180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:77776180G>A	uc003yav.2	+	11	10482	c.10095G>A	c.(10093-10095)ATG>ATA	p.M3365I		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3361	C2H2-type 19; degenerate.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AGTGCCAGATGATGTTTACTG	0.423										HNSCC(33;0.089)			7	15					0	0	0.001984	0	0
ZFHX4	79776	broad.mit.edu	37	8	77776596	77776596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:77776596C>T	uc003yav.2	+	11	10898	c.10511C>T	c.(10510-10512)TCC>TTC	p.S3504F		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3500	Ser-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CCTTCCCTTTCCTTGCCTTCA	0.507										HNSCC(33;0.089)			25	70					0	0	0.003330	0	0
CA13	377677	broad.mit.edu	37	8	86162971	86162971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:86162971C>T	uc003ydg.2	+	2	382	c.40C>T	c.(40-42)CCT>TCT	p.P14S	CA13_uc003ydf.1_RNA	NM_198584	NP_940986	Q8N1Q1	CAH13_HUMAN	carbonic anhydrase XIII	14					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0						TATTTAAGGTCCTATTCACTG	0.254													39	51					0	0	0.001706	0	0
PSKH2	85481	broad.mit.edu	37	8	87060847	87060847	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:87060847C>T	uc011lfy.1	-	3	1002	c.1002G>A	c.(1000-1002)AGG>AGA	p.R334R		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	334							ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			GGGATATGGCCCTCTGGAGAT	0.537													20	60					0	0	0.002299	0	0
PSKH2	85481	broad.mit.edu	37	8	87076613	87076613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:87076613G>A	uc011lfy.1	-	2	433	c.433C>T	c.(433-435)CTC>TTC	p.L145F		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	145	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			CGATCAAAGAGCTCCCCTCCG	0.522													17	49					0	0	0.004990	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885042	88885043	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:88885042_88885043CC>TT	uc003ydz.2	-	1	1254_1255	c.1157_1158GG>AA	c.(1156-1158)CGG>CAA	p.R386Q		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	386										ovary(1)	1						AAAGGTCCTCCCGGACAGCCAT	0.55													7	45					0	0	0.004672	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885081	88885081	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:88885081C>T	uc003ydz.2	-	1	1216	c.1119G>A	c.(1117-1119)GGG>GGA	p.G373G		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	373										ovary(1)	1						CTCGGAAGCCCCCGAGGCGAG	0.597													6	44					0	0	0.001168	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885815	88885815	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:88885815A>T	uc003ydz.2	-	1	482	c.385T>A	c.(385-387)TCT>ACT	p.S129T		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	129										ovary(1)	1						CAGCACATAGAATTCACCTTC	0.567													40	38					0	0	0.005524	0	0
RUNX1T1	862	broad.mit.edu	37	8	92982957	92982957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:92982957C>T	uc003yfd.2	-	10	1552	c.1468G>A	c.(1468-1470)GTC>ATC	p.V490I	RUNX1T1_uc003yfc.1_Missense_Mutation_p.V463I|RUNX1T1_uc003yfe.1_Missense_Mutation_p.V453I|RUNX1T1_uc010mao.2_Missense_Mutation_p.V463I|RUNX1T1_uc011lgi.1_Missense_Mutation_p.V501I|RUNX1T1_uc010man.1_Missense_Mutation_p.V115I|RUNX1T1_uc003yfb.1_Missense_Mutation_p.V453I	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	490					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GCCTCGGCGACCGTGCGCTCC	0.602													18	31					0	0	0.003330	0	0
RUNX1T1	862	broad.mit.edu	37	8	92982967	92982967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:92982967C>T	uc003yfd.2	-	10	1542	c.1458G>A	c.(1456-1458)ATG>ATA	p.M486I	RUNX1T1_uc003yfc.1_Missense_Mutation_p.M459I|RUNX1T1_uc003yfe.1_Missense_Mutation_p.M449I|RUNX1T1_uc010mao.2_Missense_Mutation_p.M459I|RUNX1T1_uc011lgi.1_Missense_Mutation_p.M497I|RUNX1T1_uc010man.1_Missense_Mutation_p.M111I|RUNX1T1_uc003yfb.1_Missense_Mutation_p.M449I	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	486					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			CCGTGCGCTCCATCTTGGCCC	0.612													18	34					0	0	0.003954	0	0
RUNX1T1	862	broad.mit.edu	37	8	92982977	92982977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:92982977C>T	uc003yfd.2	-	10	1532	c.1448G>A	c.(1447-1449)AGG>AAG	p.R483K	RUNX1T1_uc003yfc.1_Missense_Mutation_p.R456K|RUNX1T1_uc003yfe.1_Missense_Mutation_p.R446K|RUNX1T1_uc010mao.2_Missense_Mutation_p.R456K|RUNX1T1_uc011lgi.1_Missense_Mutation_p.R494K|RUNX1T1_uc010man.1_Missense_Mutation_p.R108K|RUNX1T1_uc003yfb.1_Missense_Mutation_p.R446K	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	483					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.R483H(2)		lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			CATCTTGGCCCTCTCTGTTGT	0.622													33	28					0	0	0.002836	0	0
TMEM67	91147	broad.mit.edu	37	8	94767232	94767232	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:94767232C>T	uc011lgk.1	+	1	161	c.90C>T	c.(88-90)CTC>CTT	p.L30L	TMEM67_uc010mau.2_Silent_p.L30L|TMEM67_uc010mav.2_Silent_p.L30L|TMEM67_uc010mat.1_Intron|TMEM67_uc010maw.2_Silent_p.L30L|TMEM67_uc003yga.3_Intron	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	30					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			TGTTGTTCCTCCCTCGCTTCT	0.607													63	49					0	0	0.003610	0	0
GEM	2669	broad.mit.edu	37	8	95262778	95262778	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:95262778G>A	uc003ygj.2	-	5	900	c.651C>T	c.(649-651)TTC>TTT	p.F217F	GEM_uc003ygi.2_Silent_p.F217F	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	217					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			AGGTCTCGATGAACTTGCAGT	0.547													23	18					0	0	0.002299	0	0
DPY19L4	286148	broad.mit.edu	37	8	95793318	95793318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:95793318C>T	uc003ygx.2	+	16	1763	c.1639C>T	c.(1639-1641)CCC>TCC	p.P547S		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	547						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					TTAGTTTTTTCCCAGATTAAT	0.318													114	108					0	0	0.003610	0	0
PLEKHF2	79666	broad.mit.edu	37	8	96166783	96166783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:96166783C>T	uc003yhn.1	+	2	758	c.511C>T	c.(511-513)CGT>TGT	p.R171C		NM_024613	NP_078889	Q9H8W4	PKHF2_HUMAN	phafin 2	171	FYVE-type.					transport vesicle	metal ion binding|protein binding			ovary(2)	2	Breast(36;3.18e-05)					ACCTGTTAATCGTCGCCACCA	0.488													233	558					0	0	0.003610	0	0
TSPYL5	85453	broad.mit.edu	37	8	98288944	98288944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:98288944G>A	uc003yhy.2	-	1	1233	c.1129C>T	c.(1129-1131)CCC>TCC	p.P377S		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	377					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					AACTGCAAGGGATTGGGCCAC	0.463													69	203					0	0	0.003610	0	0
POP1	10940	broad.mit.edu	37	8	99149177	99149177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:99149177C>T	uc003yij.3	+	9	1457	c.1357C>T	c.(1357-1359)CAC>TAC	p.H453Y	POP1_uc011lgv.1_Missense_Mutation_p.H453Y|POP1_uc003yik.2_Missense_Mutation_p.H453Y	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	453					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			TGCTTCTGTCCACACTGTAAG	0.378													81	46					0	0	0.003610	0	0
VPS13B	157680	broad.mit.edu	37	8	100568854	100568854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:100568854C>T	uc003yiv.2	+	31	5108	c.4997C>T	c.(4996-4998)CCA>CTA	p.P1666L	VPS13B_uc003yiw.2_Missense_Mutation_p.P1641L	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1666					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TCTCAAAATCCAGCCCTTGAG	0.408													12	37					0	0	0.000978	0	0
RRM2B	50484	broad.mit.edu	37	8	103244404	103244404	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:103244404T>C	uc003ykn.2	-	2	421	c.177A>G	c.(175-177)GCA>GCG	p.A59A	RRM2B_uc003yko.2_RNA|RRM2B_uc010mbv.1_Intron|RRM2B_uc010mbw.1_Intron|RRM2B_uc010mbx.1_Intron|RRM2B_uc010mby.1_Intron	NM_015713	NP_056528	Q7LG56	RIR2B_HUMAN	ribonucleotide reductase M2 B (TP53 inducible)	59					deoxyribonucleoside diphosphate metabolic process|DNA repair|nucleobase, nucleoside and nucleotide interconversion	nucleoplasm	ribonucleoside-diphosphate reductase activity|transition metal ion binding			ovary(2)	2	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000728)			AGGAAGCCTGTGCCTGTTTAT	0.423								Direct_reversal_of_damage|Modulation_of_nucleotide_pools					70	50					0	0	0.003610	0	0
AZIN1	51582	broad.mit.edu	37	8	103841673	103841674	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:103841673_103841674CC>AA	uc003ykx.2	-	12	1803_1804	c.1061_1062GG>TT	c.(1060-1062)TGG>TTT	p.W354F	AZIN1_uc003yky.2_Missense_Mutation_p.W354F	NM_015878	NP_056962	O14977	AZIN1_HUMAN	ornithine decarboxylase antizyme inhibitor	354					polyamine biosynthetic process|regulation of cellular amino acid metabolic process	cytosol	catalytic activity|protein binding				0	Lung NSC(17;0.000143)|all_lung(17;0.000294)		OV - Ovarian serous cystadenocarcinoma(57;0.000196)|STAD - Stomach adenocarcinoma(118;0.0414)			AGGATGGACCCCAAAGGCTGCT	0.391													10	365					0	0	0.004672	0	0
RIMS2	9699	broad.mit.edu	37	8	105105856	105105856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:105105856G>A	uc003yls.2	+	21	3120	c.2879G>A	c.(2878-2880)GGA>GAA	p.G960E	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Missense_Mutation_p.G1033E|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CGCCCAGGAGGAAACAAGAAA	0.383										HNSCC(12;0.0054)			14	51					0	0	0.003163	0	0
RIMS2	9699	broad.mit.edu	37	8	105257166	105257166	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:105257166G>A	uc003yls.2	+	24	3652	c.3411G>A	c.(3409-3411)AGG>AGA	p.R1137R	RIMS2_uc003ylp.2_Silent_p.R1119R|RIMS2_uc003ylw.2_Silent_p.R1126R|RIMS2_uc003ylq.2_Silent_p.R933R|RIMS2_uc003ylr.2_Silent_p.R958R	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1181					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AAAAACTAAGGAGCACTGTCC	0.448										HNSCC(12;0.0054)			86	62					0	0	0.003610	0	0
RIMS2	9699	broad.mit.edu	37	8	105263337	105263337	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:105263337C>T	uc003yls.2	+	27	4072	c.3831C>T	c.(3829-3831)CCC>CCT	p.P1277P	RIMS2_uc003ylp.2_Silent_p.P1259P|RIMS2_uc003ylw.2_Silent_p.P1266P|RIMS2_uc003ylq.2_Silent_p.P1073P|RIMS2_uc003ylr.2_Silent_p.P1098P	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1321	C2 2.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CGCTGGAACCCCTTTACCAGC	0.363										HNSCC(12;0.0054)			24	21					0	0	0.003330	0	0
DPYS	1807	broad.mit.edu	37	8	105405031	105405031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:105405031C>T	uc003yly.3	-	8	1553	c.1424G>A	c.(1423-1425)CGA>CAA	p.R475Q	DPYS_uc010mcf.1_Missense_Mutation_p.R45Q	NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	475					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTGCTTTATTCGTTTGTAAAT	0.473													52	154					0	0	0.003610	0	0
DPYS	1807	broad.mit.edu	37	8	105436599	105436599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:105436599C>T	uc003yly.3	-	7	1240	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	371					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AATCTGTTTTCATCCATTTTA	0.338													29	27					0	0	0.001061	0	0
DPYS	1807	broad.mit.edu	37	8	105440310	105440310	+	Silent	SNP	G	A	A	rs141994148		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:105440310G>A	uc003yly.3	-	6	1119	c.990C>T	c.(988-990)TTC>TTT	p.F330F		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	330					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GGCAGGTGTTGAAAGTGCAGT	0.433													65	32					0	0	0.003610	0	0
DPYS	1807	broad.mit.edu	37	8	105459626	105459626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:105459626C>T	uc003yly.3	-	3	658	c.529G>A	c.(529-531)GAA>AAA	p.E177K		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	177					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GAGAAGGCTTCGTACAGCTCC	0.428													49	36					0	0	0.003610	0	0
ZFPM2	23414	broad.mit.edu	37	8	106456604	106456604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:106456604G>A	uc003ymd.2	+	3	319	c.296G>A	c.(295-297)GGA>GAA	p.G99E		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	99					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GACTGGGATGGACCAGGTAGG	0.428													7	16					0	0	0.003080	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814467	106814467	+	Silent	SNP	G	A	A	rs111634505		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:106814467G>A	uc003ymd.2	+	8	2180	c.2157G>A	c.(2155-2157)AAG>AAA	p.K719K	ZFPM2_uc011lhs.1_Silent_p.K450K	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	719					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTCCACTGAAGAGGTCTGCTT	0.512													27	15					0	0	0.001271	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110420401	110420401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:110420401C>T	uc003yne.2	+	18	2041	c.1937C>T	c.(1936-1938)TCT>TTT	p.S646F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	646	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGGATCGCTTCTAAGCCACTC	0.443										HNSCC(38;0.096)			24	43					0	0	0.003954	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110463372	110463372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:110463372G>A	uc003yne.2	+	41	6448	c.6344G>A	c.(6343-6345)GGA>GAA	p.G2115E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2115	IPT/TIG 14.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTGGGATCAGGATTCAGGTAC	0.512										HNSCC(38;0.096)	OREG0018931	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	5					0	0	0.000443	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110464387	110464387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:110464387G>A	uc003yne.2	+	42	6489	c.6385G>A	c.(6385-6387)GAA>AAA	p.E2129K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2129	IPT/TIG 14.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CACCATAGCTGAAGCCAAATG	0.398										HNSCC(38;0.096)			38	28					0	0	0.002852	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110474030	110474030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:110474030G>A	uc003yne.2	+	48	7380	c.7276G>A	c.(7276-7278)GGA>AGA	p.G2426R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2426	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTGTCTCCAAGGAAAGTTTGG	0.368										HNSCC(38;0.096)			12	19					0	0	0.001368	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477133	110477133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:110477133C>T	uc003yne.2	+	49	8176	c.8072C>T	c.(8071-8073)CCT>CTT	p.P2691L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2691	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATCCTGGCTCCTTATGTTGGA	0.463										HNSCC(38;0.096)			75	48					0	0	0.003610	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110489605	110489605	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:110489605G>A	uc003yne.2	+	53	9173	c.9069G>A	c.(9067-9069)AAG>AAA	p.K3023K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3023	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAATTCCCAAGAAGCGACCAG	0.388										HNSCC(38;0.096)			20	60					0	0	0.001216	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110489617	110489617	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:110489617C>T	uc003yne.2	+	53	9185	c.9081C>T	c.(9079-9081)GCC>GCT	p.A3027A		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3027	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGCGACCAGCCACATATAAGT	0.363										HNSCC(38;0.096)			18	51					0	0	0.000743	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110523033	110523033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:110523033G>A	uc003yne.2	+	71	11527	c.11423G>A	c.(11422-11424)GGA>GAA	p.G3808E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3808	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGGTGTGCTGGATATACATGC	0.403										HNSCC(38;0.096)			156	98					0	0	0.003610	0	0
CSMD3	114788	broad.mit.edu	37	8	113293423	113293423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:113293423C>T	uc003ynu.2	-	59	9647	c.9488G>A	c.(9487-9489)GGA>GAA	p.G3163E	CSMD3_uc003yns.2_Missense_Mutation_p.G2365E|CSMD3_uc003ynt.2_Missense_Mutation_p.G3123E|CSMD3_uc011lhx.1_Missense_Mutation_p.G2994E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3163	Extracellular (Potential).|Sushi 23.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGGTAAAGTTCCAGACCATGT	0.338										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			23	78					0	0	0.003330	0	0
CSMD3	114788	broad.mit.edu	37	8	113332163	113332163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:113332163C>T	uc003ynu.2	-	46	7372	c.7213G>A	c.(7213-7215)GAA>AAA	p.E2405K	CSMD3_uc003yns.2_Missense_Mutation_p.E1607K|CSMD3_uc003ynt.2_Missense_Mutation_p.E2365K|CSMD3_uc011lhx.1_Missense_Mutation_p.E2301K|CSMD3_uc003ynw.1_Missense_Mutation_p.E116K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2405	Extracellular (Potential).|Sushi 13.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTCAAAATTTCAGCATTGGGC	0.363										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			50	85					0	0	0.003610	0	0
CSMD3	114788	broad.mit.edu	37	8	113418864	113418864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:113418864C>T	uc003ynu.2	-	35	5857	c.5698G>A	c.(5698-5700)GTT>ATT	p.V1900I	CSMD3_uc003yns.2_Missense_Mutation_p.V1102I|CSMD3_uc003ynt.2_Missense_Mutation_p.V1860I|CSMD3_uc011lhx.1_Missense_Mutation_p.V1796I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1900	Sushi 10.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCAAAAAGAACCGATGAACCG	0.423										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			29	72					0	0	0.001512	0	0
CSMD3	114788	broad.mit.edu	37	8	113662510	113662510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:113662510C>T	uc003ynu.2	-	19	3232	c.3073G>A	c.(3073-3075)GAT>AAT	p.D1025N	CSMD3_uc003yns.2_Missense_Mutation_p.D297N|CSMD3_uc003ynt.2_Missense_Mutation_p.D985N|CSMD3_uc011lhx.1_Missense_Mutation_p.D921N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1025	Extracellular (Potential).|Sushi 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATGGAGAAATCATGACCATAG	0.428										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			90	67					0	0	0.003610	0	0
CSMD3	114788	broad.mit.edu	37	8	114448954	114448954	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:114448954A>T	uc003ynu.2	-	1	289	c.130T>A	c.(130-132)TTT>ATT	p.F44I	CSMD3_uc011lhx.1_Missense_Mutation_p.F44I|CSMD3_uc010mcx.1_Missense_Mutation_p.F44I|CSMD3_uc003ynx.3_Missense_Mutation_p.F44I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	44	Helical; (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAAAACGTAAATCCACTTTTA	0.498										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			69	193					0	0	0.003610	0	0
SLC30A8	169026	broad.mit.edu	37	8	118183363	118183363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:118183363C>T	uc003yoh.2	+	7	1150	c.920C>T	c.(919-921)TCT>TTT	p.S307F	SLC30A8_uc010mcz.2_Missense_Mutation_p.S258F|SLC30A8_uc011lia.1_Missense_Mutation_p.S258F|SLC30A8_uc003yog.2_Missense_Mutation_p.S258F	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	307	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CACATCTGGTCTCTAACAATG	0.443													277	221					0	0	0.003610	0	0
COL14A1	7373	broad.mit.edu	37	8	121174684	121174684	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:121174684G>A	uc003yox.2	+	4	490	c.225G>A	c.(223-225)CTG>CTA	p.L75L		NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	75	Fibronectin type-III 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CTAACCAGCTGAATCTGCAGA	0.313													52	47					0	0	0.003610	0	0
COL14A1	7373	broad.mit.edu	37	8	121228714	121228714	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:121228714G>A	uc003yox.2	+	14	1987	c.1722G>A	c.(1720-1722)GGG>GGA	p.G574G	COL14A1_uc003yoy.2_Silent_p.G252G|COL14A1_uc010mde.1_Silent_p.G252G	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	574	Fibronectin type-III 4.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ATGCAGATGGGACTGAAATCA	0.308													55	32					0	0	0.003610	0	0
COL14A1	7373	broad.mit.edu	37	8	121256239	121256239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:121256239G>A	uc003yox.2	+	20	2736	c.2471G>A	c.(2470-2472)GGA>GAA	p.G824E	COL14A1_uc003yoy.2_Missense_Mutation_p.G502E	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	824	Fibronectin type-III 6.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TCCGCTCCTGGAAAAACCTGT	0.443													32	94					0	0	0.003755	0	0
COL14A1	7373	broad.mit.edu	37	8	121262996	121262996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:121262996G>A	uc003yox.2	+	22	3008	c.2743G>A	c.(2743-2745)GTG>ATG	p.V915M	COL14A1_uc003yoy.2_Missense_Mutation_p.V593M	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	915	Fibronectin type-III 7.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GACAGGCATGGTGAAAACATG	0.378													33	19					0	0	0.003755	0	0
COL14A1	7373	broad.mit.edu	37	8	121267517	121267517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:121267517G>A	uc003yox.2	+	23	3056	c.2791G>A	c.(2791-2793)GAA>AAA	p.E931K	COL14A1_uc003yoy.2_Missense_Mutation_p.E609K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	931	Fibronectin type-III 8.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging	p.E931K(1)		ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CAAACATGTTGAAATGACCAG	0.463													83	51					0	0	0.003610	0	0
COL14A1	7373	broad.mit.edu	37	8	121267583	121267583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:121267583G>A	uc003yox.2	+	23	3122	c.2857G>A	c.(2857-2859)GAA>AAA	p.E953K	COL14A1_uc003yoy.2_Missense_Mutation_p.E631K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	953	Fibronectin type-III 8.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GGTTGTTATAGAATCCCTCCA	0.448													38	71					0	0	0.001951	0	0
COL14A1	7373	broad.mit.edu	37	8	121293205	121293205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:121293205C>T	uc003yox.2	+	31	3996	c.3731C>T	c.(3730-3732)TCA>TTA	p.S1244L	COL14A1_uc003yoz.2_Missense_Mutation_p.S209L	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1244	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AAAGATTTTTCATCAGTGGAA	0.358													25	25					0	0	0.002780	0	0
MTBP	27085	broad.mit.edu	37	8	121457755	121457755	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:121457755C>T	uc003ypc.1	+	1	90	c.45C>T	c.(43-45)TTC>TTT	p.F15F	MRPL13_uc003ypa.2_5'Flank|MRPL13_uc010mdf.2_5'Flank|MTBP_uc003ypb.1_Silent_p.F15F|MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	15					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			AAGGAAAATTCCCGTCGGCGG	0.592													49	25					0	0	0.003610	0	0
WDR67	93594	broad.mit.edu	37	8	124096453	124096453	+	Missense_Mutation	SNP	C	T	T	rs144033919		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:124096453C>T	uc003ypp.1	+	4	482	c.392C>T	c.(391-393)TCG>TTG	p.S131L	WDR67_uc011lig.1_Missense_Mutation_p.S131L|WDR67_uc011lih.1_Missense_Mutation_p.S21L|WDR67_uc003ypq.1_RNA|WDR67_uc003ypo.1_Missense_Mutation_p.S131L	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	131	WD 2.					centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			TCAGTATTTTCGATCTCTGTG	0.398													74	59					0	0	0.003610	0	0
WDR67	93594	broad.mit.edu	37	8	124140536	124140536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:124140536C>T	uc003ypp.1	+	14	1990	c.1900C>T	c.(1900-1902)CGG>TGG	p.R634W	WDR67_uc011lig.1_Missense_Mutation_p.R634W|WDR67_uc011lih.1_Missense_Mutation_p.R524W|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Intron|WDR67_uc003ypt.1_Missense_Mutation_p.R91W|WDR67_uc003ypu.1_Missense_Mutation_p.R91W	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	634						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			TTTTCACCATCGGAATAACCT	0.328													19	69					0	0	0.001882	0	0
FAM83A	84985	broad.mit.edu	37	8	124195494	124195494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:124195494C>T	uc003ypv.2	+	2	2412	c.398C>T	c.(397-399)TCC>TTC	p.S133F	FAM83A_uc003ypw.2_Missense_Mutation_p.S133F|FAM83A_uc003ypy.2_Missense_Mutation_p.S133F|FAM83A_uc003ypx.2_Missense_Mutation_p.S133F|FAM83A_uc003ypz.2_Missense_Mutation_p.S133F	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	133										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			AAGGAAAAATCCAGCGCCACT	0.607													75	44					0	0	0.003610	0	0
ANXA13	312	broad.mit.edu	37	8	124710666	124710666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:124710666G>A	uc003yqu.2	-	4	393	c.320C>T	c.(319-321)TCC>TTC	p.S107F	ANXA13_uc003yqt.2_Missense_Mutation_p.S148F	NM_004306	NP_004297	P27216	ANX13_HUMAN	annexin A13 isoform a	107	Annexin 2.				cell differentiation	plasma membrane	calcium ion binding|calcium-dependent phospholipid binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(37;2.06e-11)|Ovarian(258;0.00579)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00288)			AATGAGGACGGACTCATCTGT	0.602													26	63					0	0	0.001271	0	0
FER1L6	654463	broad.mit.edu	37	8	125035699	125035699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:125035699C>T	uc003yqw.2	+	18	2355	c.2149C>T	c.(2149-2151)CCT>TCT	p.P717S	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	717	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GCACACTATCCCTGACGTTTT	0.527													38	70					0	0	0.001287	0	0
GSDMC	56169	broad.mit.edu	37	8	130789712	130789712	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:130789712T>C	uc003ysr.2	-	2	1004	c.122A>G	c.(121-123)AAG>AGG	p.K41R		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	41						mitochondrion				ovary(2)|skin(1)	3						ATCCTTCTTCTTTCGTAATAT	0.393													27	87					0	0	0.003954	0	0
ADCY8	114	broad.mit.edu	37	8	131861884	131861884	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:131861884G>A	uc003ytd.3	-	10	2632	c.2376C>T	c.(2374-2376)TCC>TCT	p.S792S	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	792	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TAATCAAAATGGATGCAAAGA	0.443										HNSCC(32;0.087)			27	26					0	0	0.002096	0	0
ADCY8	114	broad.mit.edu	37	8	131916126	131916126	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:131916126G>A	uc003ytd.3	-	7	2059	c.1803C>T	c.(1801-1803)ATC>ATT	p.I601I	ADCY8_uc010mds.2_Silent_p.I601I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	601	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			ACTCCTTGACGATATCTTCAG	0.483										HNSCC(32;0.087)			57	34					0	0	0.003610	0	0
OC90	729330	broad.mit.edu	37	8	133036768	133036768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:133036768G>A	uc003ytg.2	-	13	1394	c.1394C>T	c.(1393-1395)TCA>TTA	p.S465L	OC90_uc011lix.1_Missense_Mutation_p.S465L	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	481					lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			GGGACCCAGTGACTTCCGCAG	0.612													13	20					0	0	0.001855	0	0
OC90	729330	broad.mit.edu	37	8	133036790	133036790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:133036790C>T	uc003ytg.2	-	13	1372	c.1372G>A	c.(1372-1374)GCC>ACC	p.A458T	OC90_uc011lix.1_Missense_Mutation_p.A458T	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	474					lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			AACCTCTTGGCTCTGCCGAGG	0.612													24	12					0	0	0.002780	0	0
KCNQ3	3786	broad.mit.edu	37	8	133187814	133187814	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:133187814G>A	uc003ytj.2	-	5	1044	c.819C>T	c.(817-819)ATC>ATT	p.I273I	KCNQ3_uc010mdt.2_Silent_p.I273I	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	273	Helical; Name=Segment S5; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ATGAAGAAAGGATGAGTGTCA	0.443													20	30					0	0	0.001523	0	0
KCNQ3	3786	broad.mit.edu	37	8	133196562	133196562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:133196562G>A	uc003ytj.2	-	3	755	c.530C>T	c.(529-531)GCT>GTT	p.A177V	KCNQ3_uc010mdt.2_Missense_Mutation_p.A177V	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	177					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ACATCCAGCAGCCCAGATCCT	0.532													20	87					0	0	0.002299	0	0
LRRC6	23639	broad.mit.edu	37	8	133627318	133627318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:133627318C>T	uc003ytk.2	-	8	1014	c.940G>A	c.(940-942)GAA>AAA	p.E314K	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	314	CS.					cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ATCTGCTTTTCGTTATCTTTC	0.318													68	50					0	0	0.003610	0	0
PHF20L1	51105	broad.mit.edu	37	8	133806708	133806708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:133806708C>T	uc003ytt.2	+	3	461	c.136C>T	c.(136-138)CAT>TAT	p.H46Y	PHF20L1_uc003ytr.2_Missense_Mutation_p.H46Y|PHF20L1_uc010mdv.2_Missense_Mutation_p.H46Y|PHF20L1_uc003yts.2_Missense_Mutation_p.H46Y|PHF20L1_uc011lja.1_Missense_Mutation_p.H46Y|PHF20L1_uc003ytu.1_RNA|PHF20L1_uc003ytq.2_Missense_Mutation_p.H46Y	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	46	Tudor 1.						nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			GATGTTGGTCCATTTTGAGCG	0.383													19	45					0	0	0.001216	0	0
WISP1	8840	broad.mit.edu	37	8	134239812	134239812	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:134239812C>T	uc003yub.2	+	5	1039	c.963C>T	c.(961-963)TCC>TCT	p.S321S	WISP1_uc003yuc.2_Silent_p.S234S|WISP1_uc010meb.2_Silent_p.S149S|WISP1_uc010mec.2_3'UTR|WISP1_uc010med.2_Silent_p.S76S|WISP1_uc003yud.2_RNA	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	321	CTCK.				cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			TCGACGTGTCCTTCCAGTGTC	0.517													59	36					0	0	0.003610	0	0
ZFAT	57623	broad.mit.edu	37	8	135612690	135612690	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:135612690G>A	uc003yup.2	-	7	2639	c.2464C>T	c.(2464-2466)CAC>TAC	p.H822Y	ZFAT_uc003yun.2_Missense_Mutation_p.H810Y|ZFAT_uc003yuo.2_Missense_Mutation_p.H810Y|ZFAT_uc010meh.2_Missense_Mutation_p.H810Y|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.H810Y|ZFAT_uc010mej.2_Missense_Mutation_p.H760Y|ZFAT_uc003yur.2_Missense_Mutation_p.H810Y|ZFATAS_uc003yus.1_RNA	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	822	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			AGTGCTGTGTGAACTTTAAGA	0.473													40	90					0	0	0.001287	0	0
FAM135B	51059	broad.mit.edu	37	8	139160833	139160833	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:139160833G>A	uc003yuy.2	-	14	3549	c.3378C>T	c.(3376-3378)TTC>TTT	p.F1126F	FAM135B_uc003yux.2_Silent_p.F1027F|FAM135B_uc003yuz.2_Intron|FAM135B_uc003yva.2_Silent_p.F688F|FAM135B_uc003yvb.2_Intron	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1126										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CCTCTGGTGGGAAATATGGTA	0.378										HNSCC(54;0.14)			17	38					0	0	0.000743	0	0
FAM135B	51059	broad.mit.edu	37	8	139160922	139160922	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:139160922G>A	uc003yuy.2	-	14	3460	c.3289C>T	c.(3289-3291)CAG>TAG	p.Q1097*	FAM135B_uc003yux.2_Nonsense_Mutation_p.Q998*|FAM135B_uc003yuz.2_Intron|FAM135B_uc003yva.2_Nonsense_Mutation_p.Q659*|FAM135B_uc003yvb.2_Intron	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1097										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TCTTTGGCCTGATAAAAACTG	0.393										HNSCC(54;0.14)			19	15					0	0	0.001216	0	0
FAM135B	51059	broad.mit.edu	37	8	139164457	139164457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:139164457G>A	uc003yuy.2	-	13	2432	c.2261C>T	c.(2260-2262)CCT>CTT	p.P754L	FAM135B_uc003yux.2_Missense_Mutation_p.P655L|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.P316L|FAM135B_uc003yvb.2_Missense_Mutation_p.P316L	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	754										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CTCCTCAAAAGGTAAAGAGCT	0.537										HNSCC(54;0.14)			10	45					0	0	0.000673	0	0
FAM135B	51059	broad.mit.edu	37	8	139165314	139165314	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:139165314G>A	uc003yuy.2	-	13	1575	c.1404C>T	c.(1402-1404)TCC>TCT	p.S468S	FAM135B_uc003yux.2_Silent_p.S369S|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.S30S|FAM135B_uc003yvb.2_Silent_p.S30S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	468										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AATCCATTTGGGATGGTTTTA	0.383										HNSCC(54;0.14)			30	48					0	0	0.003610	0	0
COL22A1	169044	broad.mit.edu	37	8	139628251	139628251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:139628251C>T	uc003yvd.2	-	55	4364	c.3917G>A	c.(3916-3918)GGA>GAA	p.G1306E	COL22A1_uc011ljo.1_Missense_Mutation_p.G586E	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1306	Pro-rich.|Gly-rich.|Collagen-like 12.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TACATCTTTTCCTGGTAACCC	0.567										HNSCC(7;0.00092)			14	24					0	0	0.004007	0	0
COL22A1	169044	broad.mit.edu	37	8	139688824	139688824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:139688824C>T	uc003yvd.2	-	41	3574	c.3127G>A	c.(3127-3129)GGC>AGC	p.G1043S	COL22A1_uc011ljo.1_Missense_Mutation_p.G323S	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1043	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			ACCCCAATGCCTGGGTCACCA	0.522										HNSCC(7;0.00092)			5	4					0	0	0.000602	0	0
COL22A1	169044	broad.mit.edu	37	8	139838970	139838970	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:139838970C>T	uc003yvd.2	-	6	1347	c.900G>A	c.(898-900)CGG>CGA	p.R300R		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	300	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TTTTCCTGAACCGGAAGGTTG	0.512										HNSCC(7;0.00092)			14	52					0	0	0.002450	0	0
KCNK9	51305	broad.mit.edu	37	8	140630500	140630500	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:140630500C>T	uc003yvf.1	-	2	1189	c.1125_splice	c.e2+1	p.*375_splice	KCNK9_uc003yvg.1_3'UTR|KCNK9_uc003yve.1_Intron	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9							integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			CCTCCCCACACCTAAACGGAC	0.418													73	74					0	0	0.003610	0	0
KCNK9	51305	broad.mit.edu	37	8	140630513	140630513	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:140630513C>T	uc003yvf.1	-	2	1177	c.1113G>A	c.(1111-1113)CGG>CGA	p.R371R	KCNK9_uc003yvg.1_Silent_p.R371R|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	371	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			AAACGGACTTCCGGCGTTTCA	0.448													74	72					0	0	0.003610	0	0
KCNK9	51305	broad.mit.edu	37	8	140631107	140631107	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:140631107G>A	uc003yvf.1	-	2	583	c.519C>T	c.(517-519)ATC>ATT	p.I173I	KCNK9_uc003yvg.1_Silent_p.I173I|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	173	Helical; (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			CGGCCGCCCCGATGCACAGCG	0.562													9	20					0	0	0.000673	0	0
TRAPPC9	83696	broad.mit.edu	37	8	140922487	140922487	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:140922487C>T	uc003yvj.2	-	20	3002	c.2868G>A	c.(2866-2868)GAG>GAA	p.E956E	TRAPPC9_uc003yvh.2_Silent_p.E1054E|TRAPPC9_uc010mel.1_Silent_p.E377E|TRAPPC9_uc003yvi.1_Silent_p.E947E	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	956					cell differentiation	endoplasmic reticulum|Golgi apparatus		p.L956L(1)		skin(2)	2						ATTGCCCCTTCTCCCCAGGGG	0.532													20	49					0	0	0.001882	0	0
PTK2	5747	broad.mit.edu	37	8	141675085	141675085	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:141675085C>A	uc003yvu.2	-	31	3107	c.2877G>T	c.(2875-2877)TTG>TTT	p.L959F	PTK2_uc011ljp.1_Missense_Mutation_p.L267F|PTK2_uc003yvo.2_Missense_Mutation_p.L587F|PTK2_uc011ljq.1_Missense_Mutation_p.L657F|PTK2_uc003yvp.2_Missense_Mutation_p.L627F|PTK2_uc003yvq.2_Missense_Mutation_p.L464F|PTK2_uc003yvr.2_Missense_Mutation_p.L902F|PTK2_uc003yvs.2_Missense_Mutation_p.L913F|PTK2_uc003yvt.2_Missense_Mutation_p.L981F|PTK2_uc003yvv.2_Missense_Mutation_p.L862F|PTK2_uc011ljr.1_Missense_Mutation_p.L972F	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	959	Interaction with TGFB1I1.|Interaction with RGNEF (By similarity).				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			TCCTCAGGGCCAAGCCGACTT	0.453													36	33					1.60099e-16	2.77769e-16	0.004878	1	0
FLJ43860	389690	broad.mit.edu	37	8	142504968	142504968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:142504968C>T	uc003ywi.2	-	4	559	c.478G>A	c.(478-480)GAG>AAG	p.E160K	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	160							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CAGGTCTCCTCCAGGACGTCA	0.617													10	8					0	0	0.000978	0	0
CYP11B2	1585	broad.mit.edu	37	8	143993405	143993405	+	Silent	SNP	C	T	T	rs141179680		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:143993405C>T	uc003yxk.1	-	9	1506	c.1503G>A	c.(1501-1503)GCG>GCA	p.A501A		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	501					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	ACTAGTTAATCGCTCTGAAAG	0.557									Familial_Hyperaldosteronism_type_I				23	56					0	0	0.002780	0	0
GPIHBP1	338328	broad.mit.edu	37	8	144295164	144295164	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144295164C>T	uc003yxu.1	+	1	97	c.22C>T	c.(22-24)CTG>TTG	p.L8L		NM_178172	NP_835466	Q8IV16	HDBP1_HUMAN	glycosylphosphatidylinositol anchored high	8					cholesterol homeostasis|intracellular protein transport|positive regulation of chylomicron remnant clearance|positive regulation of lipoprotein lipase activity|protein import|protein localization at cell surface|protein stabilization|response to heparin|triglyceride homeostasis	anchored to external side of plasma membrane|apical plasma membrane|basolateral plasma membrane|high-density lipoprotein particle|integral to membrane|intracellular	apolipoprotein binding|chylomicron binding|lipase binding|lipid binding|protein transmembrane transporter activity				0	all_cancers(97;6.49e-11)|all_epithelial(106;2.77e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CGGGGCTGTCCTGCTTGCCCT	0.667													19	6					0	0	0.001523	0	0
GPIHBP1	338328	broad.mit.edu	37	8	144297295	144297295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144297295G>A	uc003yxu.1	+	4	532	c.457G>A	c.(457-459)GGG>AGG	p.G153R		NM_178172	NP_835466	Q8IV16	HDBP1_HUMAN	glycosylphosphatidylinositol anchored high	153					cholesterol homeostasis|intracellular protein transport|positive regulation of chylomicron remnant clearance|positive regulation of lipoprotein lipase activity|protein import|protein localization at cell surface|protein stabilization|response to heparin|triglyceride homeostasis	anchored to external side of plasma membrane|apical plasma membrane|basolateral plasma membrane|high-density lipoprotein particle|integral to membrane|intracellular	apolipoprotein binding|chylomicron binding|lipase binding|lipid binding|protein transmembrane transporter activity				0	all_cancers(97;6.49e-11)|all_epithelial(106;2.77e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					AACAGGCAAGGGGGCAGGCGG	0.682													11	25					0	0	0.000978	0	0
TOP1MT	116447	broad.mit.edu	37	8	144407676	144407676	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144407676G>A	uc003yxz.2	-	5	530	c.511C>T	c.(511-513)CAG>TAG	p.Q171*	TOP1MT_uc011lkd.1_Nonsense_Mutation_p.Q73*|TOP1MT_uc011lke.1_Nonsense_Mutation_p.Q73*|TOP1MT_uc010mfb.2_Nonsense_Mutation_p.Q73*|TOP1MT_uc011lkf.1_5'Flank|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	171					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	AACTCTTGCTGAAGTTTTTCT	0.458													26	74					0	0	0.005443	0	0
ZC3H3	23144	broad.mit.edu	37	8	144522228	144522228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144522228G>A	uc003yyd.2	-	11	2827	c.2798C>T	c.(2797-2799)CCC>CTC	p.P933L		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	933					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CTTGGTGAGGGGGGCCCTAGG	0.706													3	5					0	0	0.004672	0	0
ZNF623	9831	broad.mit.edu	37	8	144732244	144732244	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144732244C>T	uc003yzd.2	+	1	291	c.202C>T	c.(202-204)CTG>TTG	p.L68L	ZNF623_uc011lkp.1_Silent_p.L28L|ZNF623_uc003yzc.2_Silent_p.L28L	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	68					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			AGGTCAGAGCCTGGGGAGTTC	0.582													37	33					0	0	0.004878	0	0
FAM83H	286077	broad.mit.edu	37	8	144808844	144808844	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144808844G>A	uc003yzk.2	-	5	2856	c.2787C>T	c.(2785-2787)CCC>CCT	p.P929P	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	929					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GCTCCGGCACGGGGGGCACCG	0.731													6	5					0	0	0.001984	0	0
EPPK1	83481	broad.mit.edu	37	8	144940391	144940391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144940391G>A	uc003zaa.1	-	2	15054	c.15041C>T	c.(15040-15042)GCC>GTC	p.A5014V		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5014	Plectin 64.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCCGCCCGTGGCGATCTGGGC	0.692													11	243					0	0	0.004007	0	0
EPPK1	83481	broad.mit.edu	37	8	144941802	144941802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144941802G>A	uc003zaa.1	-	1	5633	c.5620C>T	c.(5620-5622)CGT>TGT	p.R1874C		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1874						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTCCCCACACGAAGTGTGTGC	0.607													37	25					0	0	0.004289	0	0
EPPK1	83481	broad.mit.edu	37	8	144943558	144943558	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144943558G>A	uc003zaa.1	-	1	3877	c.3864C>T	c.(3862-3864)TTC>TTT	p.F1288F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1288	Plectin 22.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGTCAACAAGGAAGCCAGATG	0.667													32	29					0	0	0.002836	0	0
EPPK1	83481	broad.mit.edu	37	8	144944646	144944646	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144944646G>A	uc003zaa.1	-	1	2789	c.2776C>T	c.(2776-2778)CTG>TTG	p.L926L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	926	Plectin 17.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGGCCGCACAGGTACCTGCGG	0.677													15	21					0	0	0.000743	0	0
EPPK1	83481	broad.mit.edu	37	8	144945175	144945175	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144945175G>A	uc003zaa.1	-	1	2260	c.2247C>T	c.(2245-2247)TTC>TTT	p.F749F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	749	Plectin 14.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCATCTGATCGAAGTAGCCGC	0.642													33	81					0	0	0.003755	0	0
EPPK1	83481	broad.mit.edu	37	8	144947061	144947061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:144947061C>T	uc003zaa.1	-	1	374	c.361G>A	c.(361-363)GGC>AGC	p.G121S		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	121	Plectin 3.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCAGGATAGCCCGTAGTGGCA	0.677													23	21					0	0	0.002780	0	0
PLEC	5339	broad.mit.edu	37	8	145006848	145006848	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145006848G>A	uc003zaf.1	-	15	2351	c.2181C>T	c.(2179-2181)TAC>TAT	p.Y727Y	PLEC_uc003zab.1_Silent_p.Y590Y|PLEC_uc003zac.1_Silent_p.Y594Y|PLEC_uc003zad.2_Silent_p.Y590Y|PLEC_uc003zae.1_Silent_p.Y558Y|PLEC_uc003zag.1_Silent_p.Y568Y|PLEC_uc003zah.2_Silent_p.Y576Y|PLEC_uc003zaj.2_Silent_p.Y617Y	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	727	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GGCAGTCACGGTAGGCACCCC	0.721													4	5					0	0	0.000248	0	0
PARP10	84875	broad.mit.edu	37	8	145059154	145059154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145059154G>A	uc003zal.3	-	5	1124	c.1016C>T	c.(1015-1017)CCC>CTC	p.P339L	PARP10_uc003zak.3_Missense_Mutation_p.P45L|PARP10_uc011lku.1_Missense_Mutation_p.P351L|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Missense_Mutation_p.P339L|PARP10_uc010mfn.1_Missense_Mutation_p.P254L|PARP10_uc010mfo.1_3'UTR	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	339						Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGACCCCATGGGACCTGTCCT	0.607													27	43					0	0	0.001512	0	0
GRINA	2907	broad.mit.edu	37	8	145065437	145065437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145065437C>T	uc003zan.1	+	2	212	c.46C>T	c.(46-48)CCC>TCC	p.P16S	GRINA_uc003zao.1_Missense_Mutation_p.P16S|GRINA_uc003zap.1_Missense_Mutation_p.P16S	NM_001009184	NP_001009184	Q7Z429	GRINA_HUMAN	glutamate receptor, ionotropic, N-methyl	16	Pro-rich.					integral to membrane				central_nervous_system(1)	1	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CAACTATCCTCCCCCCAACCC	0.622													16	18					0	0	0.004007	0	0
OPLAH	26873	broad.mit.edu	37	8	145113430	145113431	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145113430_145113431CC>TT	uc003zar.3	-	6	833_834	c.751_752GG>AA	c.(751-753)GGC>AAC	p.G251N	OPLAH_uc003zat.1_Missense_Mutation_p.G29N	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	251							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	ACGGCAGAAGCCCTGCACGTAG	0.698													13	37					0	0	0.004672	0	0
CYC1	1537	broad.mit.edu	37	8	145151587	145151587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145151587C>T	uc003zaz.3	+	5	755	c.712C>T	c.(712-714)CCT>TCT	p.P238S	CYC1_uc003zay.2_Missense_Mutation_p.P179S	NM_001916	NP_001907	P08574	CY1_HUMAN	cytochrome c-1	238					respiratory electron transport chain|transport	cell junction|integral to membrane|mitochondrial inner membrane|respiratory chain	electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity|heme binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;8.71e-40)|all cancers(56;3e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCCCTACTTTCCTGGCCAGGC	0.577													34	31					0	0	0.003755	0	0
DGAT1	8694	broad.mit.edu	37	8	145540555	145540555	+	Silent	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145540555T>A	uc003zbv.3	-	16	1540	c.1272A>T	c.(1270-1272)CGA>CGT	p.R424R	DGAT1_uc010mfv.2_Missense_Mutation_p.N259Y	NM_012079	NP_036211	O75907	DGAT1_HUMAN	diacylglycerol O-acyltransferase 1	424	Lumenal (Potential).				triglyceride biosynthetic process|very-low-density lipoprotein particle assembly	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;7.67e-40)|all cancers(56;7.88e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			GGCGGAACATTCGCAGAGGGA	0.657													10	16					0	0	0.000443	0	0
GPR172A	79581	broad.mit.edu	37	8	145583581	145583581	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145583581C>T	uc003zcc.1	+	3	586	c.429C>T	c.(427-429)TTC>TTT	p.F143F	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Silent_p.F143F|GPR172A_uc003zce.1_Silent_p.F143F|GPR172A_uc010mfy.1_Silent_p.F143F|GPR172A_uc003zcf.1_Silent_p.F143F|GPR172A_uc011llc.1_Silent_p.F55F	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	143						integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			CACCTCGCTTCTTACGGTCAT	0.622													85	80					0	0	0.003610	0	0
NFKBIL2	4796	broad.mit.edu	37	8	145667672	145667672	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145667672G>A	uc011llg.1	-	6	717	c.702C>T	c.(700-702)ACC>ACT	p.T234T		NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	234	TPR 5.				cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GCTTCCTCATGGTGTGCGCAC	0.647													19	32					0	0	0.001523	0	0
RECQL4	9401	broad.mit.edu	37	8	145741607	145741607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:145741607G>A	uc003zdj.2	-	5	928	c.896C>T	c.(895-897)CCA>CTA	p.P299L	LRRC14_uc003zdk.1_5'Flank|LRRC14_uc003zdl.1_5'Flank	NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	299					DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			AGGTTCCCCTGGAGGGTCTTC	0.662			N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				14	13					0	0	0.001855	0	0
ZNF7	7553	broad.mit.edu	37	8	146068344	146068344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr8:146068344G>A	uc003zeg.3	+	5	1989	c.1852G>A	c.(1852-1854)GGG>AGG	p.G618R	ZNF7_uc010mge.2_Missense_Mutation_p.G629R|ZNF7_uc011lln.1_Missense_Mutation_p.G522R|ZNF7_uc003zeh.2_Intron|ZNF7_uc003zek.3_Missense_Mutation_p.G522R|COMMD5_uc003zel.1_Intron	NM_003416	NP_003407	P17097	ZNF7_HUMAN	zinc finger protein 7	618					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.0812)|Ovarian(118;0.0822)|Acute lymphoblastic leukemia(644;0.143)	Epithelial(56;8.75e-39)|OV - Ovarian serous cystadenocarcinoma(54;1.13e-38)|all cancers(56;8.48e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;2.11e-07)		TGCCCTGGAAGGGTCCACCTT	0.433													27	52					0	0	0.004656	0	0
DOCK8	81704	broad.mit.edu	37	9	439338	439338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:439338G>A	uc003zgf.2	+	40	5285	c.5173G>A	c.(5173-5175)GAG>AAG	p.E1725K	DOCK8_uc010mgu.2_Missense_Mutation_p.E1027K|DOCK8_uc010mgv.2_Missense_Mutation_p.E1625K|DOCK8_uc003zgk.2_Missense_Mutation_p.E1183K	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	1725	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		GTACTTCACCGAGAGTGGCCT	0.617													13	10					0	0	0.003163	0	0
SMARCA2	6595	broad.mit.edu	37	9	2054680	2054680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:2054680C>T	uc003zhc.2	+	6	1229	c.1130C>T	c.(1129-1131)ACC>ATC	p.T377I	SMARCA2_uc003zhd.2_Missense_Mutation_p.T377I|SMARCA2_uc010mha.2_Missense_Mutation_p.T368I	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	377					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		ACCAAAGCAACCGTGGAACTA	0.403													31	15					0	0	0.002445	0	0
KIAA0020	9933	broad.mit.edu	37	9	2831320	2831320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:2831320G>A	uc003zhp.1	-	6	637	c.541C>T	c.(541-543)CGT>TGT	p.R181C	KIAA0020_uc010mhc.1_Missense_Mutation_p.R180C|KIAA0020_uc003zhq.1_Missense_Mutation_p.R181C	NM_014878	NP_055693	Q15397	K0020_HUMAN	KIAA0020 protein	181	Pumilio 1.|PUM-HD.					endoplasmic reticulum|nucleolus	RNA binding	p.R181P(1)		ovary(1)	1				GBM - Glioblastoma multiforme(50;0.0319)		TGGATCACACGAGTTGAATCG	0.338													49	17					0	0	0.003610	0	0
GLIS3	169792	broad.mit.edu	37	9	3829444	3829444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:3829444G>A	uc003zhw.1	-	9	2251	c.2057C>T	c.(2056-2058)TCC>TTC	p.S686F	GLIS3_uc003zhx.1_Missense_Mutation_p.S841F|GLIS3_uc010mhf.1_Missense_Mutation_p.S235F|GLIS3_uc003zhv.1_RNA	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	686					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AATTCTCTGGGAATCGGGGTA	0.532													20	12					0	0	0.003954	0	0
GLIS3	169792	broad.mit.edu	37	9	4285999	4285999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:4285999C>T	uc003zii.1	-	2	1140	c.427G>A	c.(427-429)GAT>AAT	p.D143N	GLIS3_uc003zhx.1_Intron|GLIS3_uc003zic.1_Intron|GLIS3_uc003zie.1_Intron|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_Intron|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_Intron|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron			Q8NEA6	GLIS3_HUMAN	SubName: Full=GLIS family zinc finger 3 transcript variant TS2; SubName: Full=GLIS family zinc finger 3 transcript variant TS3; SubName: Full=GLIS family zinc finger 3 transcript variant TS4; SubName: Full=GLIS family zinc finger 3 transcript variant TS5; Flags: Fragment;	Error:Variant_position_missing_in_Q8NEA6_after_alignment					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AGAAAAAAATCGTTTCCATTT	0.393													14	9					0	0	0.001855	0	0
SLC1A1	6505	broad.mit.edu	37	9	4576650	4576650	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:4576650C>T	uc003zij.1	+	10	1316	c.1080C>T	c.(1078-1080)CCC>CCT	p.P360P	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	360					D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	TCGTGTTACCCGTTGGTGCAA	0.483													41	26					0	0	0.001951	0	0
JAK2	3717	broad.mit.edu	37	9	5069174	5069174	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:5069174C>T	uc010mhm.2	+	10	1592	c.1479C>T	c.(1477-1479)TTC>TTT	p.F493F	JAK2_uc003ziw.2_Silent_p.F493F	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	493					actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		ATATAATTTTCCAGTTTACTA	0.353		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				20	10					0	0	0.002780	0	0
PTPRD	5789	broad.mit.edu	37	9	8341692	8341692	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:8341692C>T	uc003zkk.2	-	39	5658	c.4947_splice	c.e39+1	p.K1649_splice	PTPRD_uc003zkp.2_Splice_Site_p.K1243_splice|PTPRD_uc003zkq.2_Splice_Site_p.K1242_splice|PTPRD_uc003zkr.2_Splice_Site_p.K1233_splice|PTPRD_uc003zks.2_Splice_Site_p.K1242_splice|PTPRD_uc003zkl.2_Splice_Site_p.K1640_splice|PTPRD_uc003zkm.2_Splice_Site_p.K1636_splice|PTPRD_uc003zkn.2_Splice_Site_p.K1238_splice|PTPRD_uc003zko.2_Splice_Site_p.K1239_splice	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D						transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CAATACCATACCTTAAATTCG	0.403										TSP Lung(15;0.13)			44	22					0	0	0.003610	0	0
PTPRD	5789	broad.mit.edu	37	9	8500768	8500768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:8500768C>T	uc003zkk.2	-	23	2825	c.2114G>A	c.(2113-2115)CGA>CAA	p.R705Q	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.R705Q|PTPRD_uc003zkm.2_Missense_Mutation_p.R692Q|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	705	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TTCATTGGTTCGAATCAACAC	0.473										TSP Lung(15;0.13)			17	10					0	0	0.004990	0	0
FREM1	158326	broad.mit.edu	37	9	14824054	14824054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:14824054G>A	uc003zlm.2	-	12	2728	c.2138C>T	c.(2137-2139)CCT>CTT	p.P713L	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	713	CSPG 4.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CAGGGCCGTAGGATTCTTAAC	0.433													4	1					0	0	0.001168	0	0
FREM1	158326	broad.mit.edu	37	9	14859410	14859410	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:14859410G>A	uc003zlm.2	-	4	992	c.402C>T	c.(400-402)ATC>ATT	p.I134I	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	134					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCATATGGATGATGTTACAGT	0.408													60	35					0	0	0.003610	0	0
C9orf93	203238	broad.mit.edu	37	9	15745559	15745559	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:15745559C>T	uc003zmd.2	+	18	2916	c.2601C>T	c.(2599-2601)CTC>CTT	p.L867L	C9orf93_uc003zme.2_Silent_p.L782L|C9orf93_uc011lmu.1_Silent_p.L875L|C9orf93_uc003zmf.1_Silent_p.L175L	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	867											0				GBM - Glioblastoma multiforme(50;4.84e-07)		TCAGTTGGCTCACCAGTTCTG	0.353													103	37					0	0	0.003610	0	0
CNTLN	54875	broad.mit.edu	37	9	17466874	17466874	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:17466874C>T	uc003zmz.2	+	23	3863	c.3837C>T	c.(3835-3837)TTC>TTT	p.F1279F	CNTLN_uc003zmy.2_Silent_p.F1280F|CNTLN_uc010mio.2_Silent_p.F959F	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	1280	Potential.					centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		TAGAAGAGTTCACCACATTTG	0.393													36	14					0	0	0.001951	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18707036	18707036	+	Silent	SNP	C	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:18707036C>A	uc003zne.3	+	14	1993	c.1866C>A	c.(1864-1866)TCC>TCA	p.S622S		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	622	TSP type-1 5.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GCTCCGAGTCCTGTGGAGGAG	0.537													11	7					1.5842e-08	2.73632e-08	0.001855	1	0
ADAMTSL1	92949	broad.mit.edu	37	9	18795486	18795486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:18795486G>A	uc003zne.3	+	20	3896	c.3769G>A	c.(3769-3771)GGA>AGA	p.G1257R		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1257	Ig-like C2-type 2.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CAATGCCTTGGGATACGACTC	0.388													7	7					0	0	0.001984	0	0
IFNW1	3467	broad.mit.edu	37	9	21141124	21141124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:21141124C>T	uc003zol.1	-	1	1021	c.446G>A	c.(445-447)GGA>GAA	p.G149E		NM_002177	NP_002168	P05000	IFNW1_HUMAN	interferon, omega 1 precursor	149					cell cycle arrest|defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0				GBM - Glioblastoma multiforme(5;2.35e-185)|Lung(24;2.24e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GACACGGATTCCCTGGAAGTA	0.488													14	10					0	0	0.001855	0	0
IFNA6	3443	broad.mit.edu	37	9	21350398	21350398	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:21350398G>A	uc011lni.1	-	1	489	c.489C>T	c.(487-489)GCC>GCT	p.A163A		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	163					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		CAACCTCCCAGGCACAAGGGC	0.453													81	41					0	0	0.003610	0	0
IFNA6	3443	broad.mit.edu	37	9	21350703	21350703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:21350703G>A	uc011lni.1	-	1	184	c.184C>T	c.(184-186)CCC>TCC	p.P62S		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	62					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TCCTCCTGGGGAAATCTGAAG	0.512													36	15					0	0	0.005524	0	0
IFNA13	3447	broad.mit.edu	37	9	21367995	21367995	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:21367995G>A	uc003zpa.2	-	1	81	c.15C>T	c.(13-15)CCC>CCT	p.P5P		NM_006900	NP_008831	P01562	IFNA1_HUMAN	interferon, alpha 13 precursor	4					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			ovary(1)	1				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)		GTAAAGCAAAGGGCGAGGCCA	0.547													15	9					0	0	0.004007	0	0
CDKN2A	1029	broad.mit.edu	37	9	21974679	21974679	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:21974679G>A	uc003zpk.2	-	1	360	c.148C>T	c.(148-150)CAG>TAG	p.Q50*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Nonsense_Mutation_p.Q50*|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	50	ANK 2.		Q -> R (in CMM2).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(25)|p.Q50*(5)|p.Q50R(1)|p.V28_V51del(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CTACCCACCTGGATCGGCCTC	0.682		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			86	57					0	0	0.003610	0	0
TEK	7010	broad.mit.edu	37	9	27202880	27202880	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:27202880T>G	uc003zqi.3	+	13	2414	c.1972T>G	c.(1972-1974)TCT>GCT	p.S658A	TEK_uc011lno.1_Missense_Mutation_p.S615A|TEK_uc011lnp.1_Missense_Mutation_p.S511A|TEK_uc003zqj.1_Missense_Mutation_p.S592A	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	658	Extracellular (Potential).|Fibronectin type-III 3.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		AGCTGTGATTTCTTGGACAAT	0.343													40	20					0	0	0.003610	0	0
TAF1L	138474	broad.mit.edu	37	9	32631735	32631735	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:32631735C>T	uc003zrg.1	-	1	3933	c.3843G>A	c.(3841-3843)CTG>CTA	p.L1281L	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1281					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CCCCACATTTCAGTTTTAGGT	0.473													55	18					0	0	0.003610	0	0
NFX1	4799	broad.mit.edu	37	9	33366686	33366686	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:33366686C>T	uc003zsq.2	+	22	3160	c.3099C>T	c.(3097-3099)ATC>ATT	p.I1033I	SUGT1P1_uc010mjq.1_Intron|NFX1_uc003zsr.2_Silent_p.I1034I	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	1033	R3H.				inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		ACCGCCGGATCATCCATGACT	0.493													9	4					0	0	0.000673	0	0
DCAF12	25853	broad.mit.edu	37	9	34107373	34107373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:34107373G>A	uc003ztt.2	-	3	866	c.524C>T	c.(523-525)CCT>CTT	p.P175L		NM_015397	NP_056212	Q5T6F0	DCA12_HUMAN	DDB1 and CUL4 associated factor 12	175	WD 1.					centrosome|CUL4 RING ubiquitin ligase complex					0						TACACACACAGGATCCAGCGT	0.488													42	7					0	0	0.003610	0	0
DNAI1	27019	broad.mit.edu	37	9	34500829	34500829	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:34500829C>T	uc003zum.2	+	11	1204	c.1011C>T	c.(1009-1011)GCC>GCT	p.A337A		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	337					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		CCGTCACTGCCCTCTGCTGGT	0.552									Kartagener_syndrome		OREG0019152	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	6					0	0	0.001216	0	0
UNC13B	10497	broad.mit.edu	37	9	35295908	35295908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:35295908C>T	uc003zwq.2	+	8	1034	c.742C>T	c.(742-744)CCA>TCA	p.P248S	UNC13B_uc010mkl.1_Missense_Mutation_p.P248S|UNC13B_uc003zwr.2_Missense_Mutation_p.P248S	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	248					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			CCTTGATTATCCAGAGCGGCG	0.483													6	2					0	0	0.001168	0	0
TMEM8B	51754	broad.mit.edu	37	9	35852909	35852909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:35852909C>T	uc003zym.2	+	12	1920	c.905C>T	c.(904-906)TCC>TTC	p.S302F	TMEM8B_uc003zyo.2_Missense_Mutation_p.S302F	NM_001042589	NP_001036054	A6NDV4	TMM8B_HUMAN	transmembrane protein 8B isoform a	302	Helical; (Potential).				cell-matrix adhesion|regulation of growth|regulation of mitotic cell cycle	cell surface|endoplasmic reticulum|integral to membrane|mitochondrion|nucleus|plasma membrane	protein binding			ovary(1)	1						TTCCTGGGCTCCTTAATGTCC	0.532													36	8					0	0	0.004878	0	0
OR2S2	56656	broad.mit.edu	37	9	35957729	35957729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:35957729G>A	uc011lpi.1	-	1	423	c.367C>T	c.(367-369)CGC>TGC	p.R123C		NM_019897	NP_063950	Q9NQN1	OR2S1_HUMAN	olfactory receptor, family 2, subfamily S,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00613)|STAD - Stomach adenocarcinoma(86;0.194)			GCCACATAGCGATCAAATGCC	0.562													16	9					0	0	0.004990	0	0
FAM75A2	642265	broad.mit.edu	37	9	39361104	39361104	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:39361104G>A	uc004abm.2	+	4	3371	c.3342G>A	c.(3340-3342)AGG>AGA	p.R1114R		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	1114						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		AGAAGTCTAGGAAGCCCAACT	0.483													87	36					0	0	0.003610	0	0
ANKRD20A4	728747	broad.mit.edu	37	9	69420375	69420375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:69420375G>A	uc004afn.2	+	13	1377	c.1265G>A	c.(1264-1266)GGG>GAG	p.G422E		NM_001098805	NP_001092275	Q4UJ75	A20A4_HUMAN	ankyrin repeat domain 20 family, member A4	422											0						AGAAAGATTGGGAAAACGTAT	0.343													35	195					0	0	0.004878	0	0
ANKRD20A4	728747	broad.mit.edu	37	9	69420398	69420398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:69420398C>T	uc004afn.2	+	13	1400	c.1288C>T	c.(1288-1290)CCC>TCC	p.P430S		NM_001098805	NP_001092275	Q4UJ75	A20A4_HUMAN	ankyrin repeat domain 20 family, member A4	430											0						TCAGCAATTTCCCAAGAAGCT	0.323													84	228					0	0	0.003610	0	0
TMC1	117531	broad.mit.edu	37	9	75403289	75403289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:75403289G>A	uc004aiz.1	+	14	1459	c.919G>A	c.(919-921)GAT>AAT	p.D307N	TMC1_uc010moz.1_Missense_Mutation_p.D265N|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.D161N|TMC1_uc010mpa.1_Missense_Mutation_p.D161N	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	307	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						TGGAGGTGGAGATGACAACAC	0.403													43	8					0	0	0.002522	0	0
TMC1	117531	broad.mit.edu	37	9	75407149	75407149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:75407149G>A	uc004aiz.1	+	17	1987	c.1447G>A	c.(1447-1449)GAA>AAA	p.E483K	TMC1_uc010moz.1_Missense_Mutation_p.E441K|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.E337K|TMC1_uc010mpa.1_Missense_Mutation_p.E337K	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	483	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						TACCCTTTGGGAAGCCAATAT	0.413													157	18					0	0	0.003610	0	0
ANXA1	301	broad.mit.edu	37	9	75775278	75775278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:75775278C>T	uc004ajf.1	+	5	444	c.370C>T	c.(370-372)CGT>TGT	p.R124C	ANXA1_uc004aje.1_Missense_Mutation_p.R124C|ANXA1_uc004ajg.1_Missense_Mutation_p.R124C	NM_000700	NP_000691	P04083	ANXA1_HUMAN	annexin I	124	Annexin 2.				alpha-beta T cell differentiation|anti-apoptosis|cell surface receptor linked signaling pathway|cellular component movement|inflammatory response|keratinocyte differentiation|lipid metabolic process|peptide cross-linking|positive regulation of vesicle fusion	basolateral plasma membrane|cilium|cornified envelope|cytoplasm|extracellular region|nucleus	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity|protein binding, bridging|receptor binding|structural molecule activity			breast(1)|central_nervous_system(1)	2		all_epithelial(88;2.54e-11)		OV - Ovarian serous cystadenocarcinoma(323;2.82e-06)|GBM - Glioblastoma multiforme(74;0.0325)	Alclometasone(DB00240)|Amcinonide(DB00288)|Beclomethasone(DB00394)|Betamethasone(DB00443)|Clobetasol(DB01013)|Clocortolone(DB00838)|Desonide(DB01260)|Desoximetasone(DB00547)|Dexamethasone(DB01234)|Diflorasone(DB00223)|Flumethasone Pivalate(DB00663)|Halobetasol Propionate(DB00596)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mometasone(DB00764)|Prednicarbate(DB01130)|Prednisone(DB00635)|Rimexolone(DB00896)|Triamcinolone(DB00620)	TGATGAACTTCGTGCTGCCAT	0.368													98	15					0	0	0.003610	0	0
ANXA1	301	broad.mit.edu	37	9	75783979	75783979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:75783979G>A	uc004ajf.1	+	12	967	c.893G>A	c.(892-894)AGG>AAG	p.R298K	ANXA1_uc004aje.1_Missense_Mutation_p.R298K|ANXA1_uc004ajg.1_Missense_Mutation_p.R298K	NM_000700	NP_000691	P04083	ANXA1_HUMAN	annexin I	298	Annexin 4.				alpha-beta T cell differentiation|anti-apoptosis|cell surface receptor linked signaling pathway|cellular component movement|inflammatory response|keratinocyte differentiation|lipid metabolic process|peptide cross-linking|positive regulation of vesicle fusion	basolateral plasma membrane|cilium|cornified envelope|cytoplasm|extracellular region|nucleus	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity|protein binding, bridging|receptor binding|structural molecule activity			breast(1)|central_nervous_system(1)	2		all_epithelial(88;2.54e-11)		OV - Ovarian serous cystadenocarcinoma(323;2.82e-06)|GBM - Glioblastoma multiforme(74;0.0325)	Alclometasone(DB00240)|Amcinonide(DB00288)|Beclomethasone(DB00394)|Betamethasone(DB00443)|Clobetasol(DB01013)|Clocortolone(DB00838)|Desonide(DB01260)|Desoximetasone(DB00547)|Dexamethasone(DB01234)|Diflorasone(DB00223)|Flumethasone Pivalate(DB00663)|Halobetasol Propionate(DB00596)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mometasone(DB00764)|Prednicarbate(DB01130)|Prednisone(DB00635)|Rimexolone(DB00896)|Triamcinolone(DB00620)	GCATTGATCAGGATTATGGTT	0.368													119	21					0	0	0.003610	0	0
RORB	6096	broad.mit.edu	37	9	77245258	77245258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:77245258G>A	uc004aji.2	+	2	150	c.101G>A	c.(100-102)GGA>GAA	p.G34E	RORB_uc004ajh.2_Missense_Mutation_p.G23E	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	34	Nuclear receptor.|NR C4-type.				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						ATCCACTACGGAGTCATCACA	0.448													54	6					0	0	0.003610	0	0
RORB	6096	broad.mit.edu	37	9	77257394	77257394	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:77257394C>T	uc004aji.2	+	4	382	c.333C>T	c.(331-333)CAC>CAT	p.H111H	RORB_uc004ajh.2_Silent_p.H100H	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	111	Hinge (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						Tgcagaagcaccagcagcggc	0.423													54	9					0	0	0.003610	0	0
TRPM6	140803	broad.mit.edu	37	9	77403532	77403532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:77403532C>T	uc004ajl.1	-	20	2903	c.2665G>A	c.(2665-2667)GAG>AAG	p.E889K	TRPM6_uc004ajk.1_Missense_Mutation_p.E884K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	889	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TAACTCACCTCCCTGACCACC	0.493													60	12					0	0	0.003610	0	0
PCSK5	5125	broad.mit.edu	37	9	78547391	78547391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:78547391G>A	uc004ajz.2	+	2	827	c.289G>A	c.(289-291)GAA>AAA	p.E97K	PCSK5_uc004ajy.2_Missense_Mutation_p.E97K|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	97					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CATTTCAATGGAACCAAAGGT	0.478													38	6					0	0	0.005524	0	0
PRUNE2	158471	broad.mit.edu	37	9	79322791	79322791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:79322791C>T	uc010mpk.2	-	8	4523	c.4399G>A	c.(4399-4401)GAA>AAA	p.E1467K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1467					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TTACATTCTTCAGTTTTCTCA	0.433													48	13					0	0	0.003610	0	0
VPS13A	23230	broad.mit.edu	37	9	79932584	79932584	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:79932584C>T	uc004akr.2	+	40	5186	c.4926C>T	c.(4924-4926)ATC>ATT	p.I1642I	VPS13A_uc004akp.3_Silent_p.I1642I|VPS13A_uc004akq.3_Silent_p.I1642I|VPS13A_uc004aks.2_Silent_p.I1603I|VPS13A_uc004akt.2_5'Flank|VPS13A_uc010mpo.1_Silent_p.I238I	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1642					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						CACAAGTGATCGATATGTCAG	0.294													31	4					0	0	0.004878	0	0
FRMD3	257019	broad.mit.edu	37	9	85905579	85905579	+	Silent	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:85905579T>C	uc004ams.1	-	13	1336	c.1134A>G	c.(1132-1134)GAA>GAG	p.E378E	FRMD3_uc004amr.1_Silent_p.E364E	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	378						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						GCTGCAGGGGTTCCATGTTAA	0.517													72	8					0	0	0.003610	0	0
C9orf64	84267	broad.mit.edu	37	9	86554574	86554574	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:86554574A>G	uc004anb.2	-	4	1126	c.878T>C	c.(877-879)CTT>CCT	p.L293P	C9orf64_uc004anc.2_Missense_Mutation_p.L152P	NM_032307	NP_115683	Q5T6V5	CI064_HUMAN	hypothetical protein LOC84267	293											0						AAGCTCCAGAAGACAATCCCG	0.453													64	8					0	0	0.003610	0	0
DAPK1	1612	broad.mit.edu	37	9	90312085	90312085	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:90312085C>T	uc004apc.2	+	22	2715	c.2577C>T	c.(2575-2577)TTC>TTT	p.F859F	DAPK1_uc004apd.2_Silent_p.F859F|DAPK1_uc011ltg.1_Intron|DAPK1_uc011lth.1_Silent_p.F596F	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	859					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						GGCTCAGTTTCCTGAAGTCCC	0.493									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				29	1					0	0	0.001061	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535308	90535308	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:90535308C>T	uc010mqi.2	+	4	515	c.486C>T	c.(484-486)TCC>TCT	p.S162S	FAM75C1_uc004apq.3_Silent_p.S145S	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CCATTGTCTCCCCGTTAGCTT	0.597													106	15					0	0	0.003610	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535652	90535652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:90535652C>T	uc010mqi.2	+	4	859	c.830C>T	c.(829-831)CCA>CTA	p.P277L	FAM75C1_uc004apq.3_Missense_Mutation_p.P260L	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						GCTTCTGTCCCAGCCATCTCA	0.547													79	12					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	9	90746875	90746875	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:90746875G>A	uc011lti.1	-	4	1106	c.1077C>T	c.(1075-1077)TCC>TCT	p.S359S						SubName: Full=cDNA FLJ59639;																		CTGGGAAAGAGGATTGAAGAT	0.537													8	204					0	0	0.000958	0	0
SEMA4D	10507	broad.mit.edu	37	9	92007373	92007373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:92007373G>A	uc004aqo.1	-	10	1159	c.587C>T	c.(586-588)CCT>CTT	p.P196L	SEMA4D_uc011ltm.1_Missense_Mutation_p.P196L|SEMA4D_uc011ltn.1_RNA|SEMA4D_uc011lto.1_RNA|SEMA4D_uc004aqp.1_Missense_Mutation_p.P194L	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	196	Sema.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						TGTCCTCAGAGGACTGTGGGA	0.498													62	16					0	0	0.003610	0	0
SYK	6850	broad.mit.edu	37	9	93650881	93650881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:93650881G>A	uc004aqz.2	+	13	2012	c.1807G>A	c.(1807-1809)GAT>AAT	p.D603N	SYK_uc004ara.2_Missense_Mutation_p.D580N|SYK_uc004arb.2_Missense_Mutation_p.D580N|SYK_uc004arc.2_Missense_Mutation_p.D603N|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	603	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity	p.D580H(1)		lung(2)|stomach(1)|ovary(1)|skin(1)	5						AGAGATGTACGATCTCATGAA	0.478			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								14	4					0	0	0.003163	0	0
C9orf129	445577	broad.mit.edu	37	9	96097807	96097807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:96097807G>A	uc010mre.2	-	3	578	c.214C>T	c.(214-216)CAC>TAC	p.H72Y		NM_001098808	NP_001092278	Q5T035	CI129_HUMAN	hypothetical protein LOC445577	72										ovary(1)	1						TTCCCTTCGTGAGGAATGTTG	0.607													16	3					0	0	0.005443	0	0
PTCH1	5727	broad.mit.edu	37	9	98220325	98220325	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:98220325G>A	uc004avk.3	-	18	3326	c.3138C>T	c.(3136-3138)TTC>TTT	p.F1046F	PTCH1_uc010mro.2_Silent_p.F895F|PTCH1_uc010mrp.2_Silent_p.F895F|PTCH1_uc010mrq.2_Silent_p.F895F|PTCH1_uc004avl.3_Silent_p.F895F|PTCH1_uc010mrr.2_Silent_p.F980F|PTCH1_uc004avm.3_Silent_p.F1045F	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1046	Helical; (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.F1046F(2)|p.I963fs*2(1)|p.F1045F(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GGTTCAGAAGGAAGACAGCGC	0.552									Basal_Cell_Nevus_syndrome				28	7					0	0	0.004656	0	0
HEMGN	55363	broad.mit.edu	37	9	100693345	100693345	+	Missense_Mutation	SNP	G	A	A	rs139664531	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:100693345G>A	uc004axy.2	-	3	440	c.332C>T	c.(331-333)CCT>CTT	p.P111L	HEMGN_uc004axz.2_Missense_Mutation_p.P111L	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	111					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TATGCTCCCAGGTGGCTCAGT	0.418													64	12					0	0	0.003610	0	0
GABBR2	9568	broad.mit.edu	37	9	101073469	101073469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:101073469C>T	uc004ays.2	-	14	2068	c.1912G>A	c.(1912-1914)GAT>AAT	p.D638N		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	638	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	ATGGAGATATCCCGTCCTGCT	0.547													27	3					0	0	0.001786	0	0
COL15A1	1306	broad.mit.edu	37	9	101797356	101797356	+	Missense_Mutation	SNP	C	T	T	rs142089094	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:101797356C>T	uc004azb.1	+	18	2346	c.2140C>T	c.(2140-2142)CCT>TCT	p.P714S		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	714	Triple-helical region 2 (COL2).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				AGCTGGCCCTCCTGGGGTCAT	0.612													41	5					0	0	0.001287	0	0
RNF20	56254	broad.mit.edu	37	9	104324684	104324684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:104324684C>T	uc004bbn.2	+	20	2998	c.2908C>T	c.(2908-2910)CAT>TAT	p.H970Y		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	970					histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		CAATGATTTTCATCGCATCTA	0.448													27	6					0	0	0.005443	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449125	104449125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:104449125G>A	uc004bbp.1	-	2	1658	c.1057C>T	c.(1057-1059)CGT>TGT	p.R353C	GRIN3A_uc004bbq.1_Missense_Mutation_p.R353C	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	353	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	AGCACCCAACGAAGTTCAGGG	0.512													22	3					0	0	0.002299	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449252	104449252	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:104449252G>A	uc004bbp.1	-	2	1531	c.930C>T	c.(928-930)TTC>TTT	p.F310F	GRIN3A_uc004bbq.1_Silent_p.F310F	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	310	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GGATCTGTAGGAAGCTCAAGA	0.493													44	9					0	0	0.001706	0	0
OR13F1	138805	broad.mit.edu	37	9	107266963	107266963	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:107266963C>T	uc011lvm.1	+	1	420	c.420C>T	c.(418-420)ACC>ACT	p.T140T		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						ATAGGAGAACCTGTGTGCAGA	0.532													69	9					0	0	0.003610	0	0
OR13C2	392376	broad.mit.edu	37	9	107367600	107367600	+	Silent	SNP	G	A	A	rs148118547		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:107367600G>A	uc011lvq.1	-	1	309	c.309C>T	c.(307-309)CTC>CTT	p.L103L		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGGCCAAGCCGAGGAACATCT	0.512													46	9					0	0	0.003610	0	0
OR13C9	286362	broad.mit.edu	37	9	107380206	107380206	+	Missense_Mutation	SNP	A	G	G	rs76976154		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:107380206A>G	uc011lvr.1	-	1	280	c.280T>C	c.(280-282)TTT>CTT	p.F94L		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGCCAGAAAAGGAAATGGTC	0.507													8	97					0	0	0.003163	0	0
ZNF462	58499	broad.mit.edu	37	9	109692838	109692838	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:109692838C>T	uc004bcz.2	+	4	6169	c.5880C>T	c.(5878-5880)ATC>ATT	p.I1960I	ZNF462_uc010mto.2_Silent_p.I1808I|ZNF462_uc004bda.2_Silent_p.I1808I|ZNF462_uc011lvz.1_5'Flank	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1960					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						TGCCAAAGATCAAGGAGAGGA	0.478													30	3					0	0	0.001061	0	0
ZNF462	58499	broad.mit.edu	37	9	109701389	109701389	+	Splice_Site	SNP	G	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:109701389G>T	uc004bcz.2	+	7	6716	c.6427_splice	c.e7+1	p.D2143_splice	ZNF462_uc010mto.2_Splice_Site_p.D2052_splice|ZNF462_uc004bda.2_Splice_Site_p.D2051_splice|ZNF462_uc011lvz.1_Splice_Site_p.D100_splice|ZNF462_uc004bdb.1_Splice_Site_p.D51_splice	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462						transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GACTCCAATGGTAAAAATGGG	0.493													69	11					4.83814e-26	8.41982e-26	0.003610	1	0
EPB41L4B	54566	broad.mit.edu	37	9	111965972	111965972	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:111965972C>T	uc004bdz.1	-	19	2212	c.1917G>A	c.(1915-1917)AAG>AAA	p.K639K		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	639						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GACTGGATTTCTTATTGATAT	0.373													57	11					0	0	0.003610	0	0
PTPN3	5774	broad.mit.edu	37	9	112225638	112225638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:112225638C>T	uc004bed.2	-	2	189	c.77G>A	c.(76-78)CGA>CAA	p.R26Q	PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.R26Q|PTPN3_uc011lwh.1_5'UTR|PTPN3_uc004bee.3_Missense_Mutation_p.R26Q	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	26					negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						GACTTCTGATCGAGTTTTCTC	0.388													89	21					0	0	0.003610	0	0
TXNDC8	255220	broad.mit.edu	37	9	113096597	113096597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:113096597C>T	uc004bes.2	-	2	77	c.28G>A	c.(28-30)GAA>AAA	p.E10K	TXNDC8_uc011lwl.1_Missense_Mutation_p.E10K	NM_001003936	NP_001003936	Q6A555	TXND8_HUMAN	thioredoxin domain containing 8	10	Thioredoxin.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	Golgi apparatus	electron carrier activity|protein disulfide oxidoreductase activity				0						GTTTTAAATTCATTCTGAAAA	0.353													29	6					0	0	0.001271	0	0
SVEP1	79987	broad.mit.edu	37	9	113173551	113173551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:113173551C>T	uc010mtz.2	-	37	6777	c.6440G>A	c.(6439-6441)GGA>GAA	p.G2147E	SVEP1_uc010mty.2_Missense_Mutation_p.G73E	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2147	Sushi 13.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TGGTGGCTCTCCACACCGCAC	0.507													50	12					0	0	0.003610	0	0
MUSK	4593	broad.mit.edu	37	9	113547935	113547935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:113547935G>A	uc004bey.2	+	12	1813	c.1715G>A	c.(1714-1716)AGG>AAG	p.R572K	MUSK_uc004bez.1_Missense_Mutation_p.R152K	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	572	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						GAGTATCCAAGGAATAACATT	0.448													67	19					0	0	0.003610	0	0
KIAA0368	23392	broad.mit.edu	37	9	114187776	114187776	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:114187776G>A	uc004bfe.1	-	13	1671	c.1671C>T	c.(1669-1671)ACC>ACT	p.T557T	KIAA0368_uc010muc.1_Silent_p.T379T	NM_001080398	NP_001073867			KIAA0368 protein												0						TTTCTGGACAGCTTTAAATAA	0.323													13	3					0	0	0.003163	0	0
ZNF883	169834	broad.mit.edu	37	9	115760185	115760185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:115760185G>A	uc011lwy.1	-	5	1594	c.355C>T	c.(355-357)CAT>TAT	p.H119Y		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	119	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCCAGTATGGATTCTCTCA	0.388													29	5					0	0	0.001061	0	0
FKBP15	23307	broad.mit.edu	37	9	115931755	115931755	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:115931755G>A	uc004bgs.2	-	26	3352	c.3234C>T	c.(3232-3234)GTC>GTT	p.V1078V	FKBP15_uc004bgr.2_Silent_p.V515V|FKBP15_uc011lxc.1_Silent_p.V659V|FKBP15_uc011lxd.1_Silent_p.V1010V	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	1078					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						CCCTGACACAGACCTTTCCTG	0.587													112	17					0	0	0.003610	0	0
DFNB31	25861	broad.mit.edu	37	9	117169089	117169089	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:117169089G>A	uc004biz.3	-	9	2431	c.1782C>T	c.(1780-1782)CTC>CTT	p.L594L	DFNB31_uc004bix.2_Silent_p.L243L|DFNB31_uc004biy.3_Silent_p.L211L|DFNB31_uc004bja.3_Silent_p.L594L	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	594	Pro-rich.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GGCCTAGTGGGAGGTCGTTGC	0.617													13	0					0	0	0.001368	0	0
TNC	3371	broad.mit.edu	37	9	117846615	117846615	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:117846615G>A	uc004bjj.3	-	4	2366	c.2004C>T	c.(2002-2004)TTC>TTT	p.F668F	TNC_uc010mvf.2_Silent_p.F668F	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	668	Fibronectin type-III 1.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CAGGCACACGGAACTGCATTT	0.567													30	9					0	0	0.001512	0	0
DEC1	50514	broad.mit.edu	37	9	118162708	118162708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:118162708G>A	uc004bjk.1	+	6	603	c.84G>A	c.(82-84)ATG>ATA	p.M28I	DEC1_uc004bjl.1_Intron	NM_017418	NP_059114	Q9P2X7	DEC1_HUMAN	deleted in esophageal cancer 1	28					negative regulation of cell proliferation					ovary(1)	1						tgttacacatgatggtaggtg	0													61	12					0	0	0.003610	0	0
PAPPA	5069	broad.mit.edu	37	9	118950101	118950101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:118950101G>A	uc004bjn.2	+	2	1465	c.1084G>A	c.(1084-1086)GAA>AAA	p.E362K	PAPPA_uc011lxp.1_Missense_Mutation_p.E155K|PAPPA_uc011lxq.1_Missense_Mutation_p.E155K	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	362	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CAACCTCTATGAAGATGATCA	0.542													21	6					0	0	0.001882	0	0
TRIM32	22954	broad.mit.edu	37	9	119460032	119460032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:119460032C>T	uc004bjx.2	+	2	169	c.11C>T	c.(10-12)GCA>GTA	p.A4V	ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjs.1_Intron|ASTN2_uc004bjt.1_Intron|TRIM32_uc004bjw.2_Missense_Mutation_p.A4V	NM_001099679	NP_001093149	Q13049	TRI32_HUMAN	tripartite motif-containing 32	4	Poly-Ala.				fat cell differentiation|innate immune response|negative regulation of apoptosis|negative regulation of fibroblast proliferation|positive regulation of cell cycle|positive regulation of cell growth|positive regulation of cell migration|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein catabolic process|positive regulation of proteolysis|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to tumor necrosis factor|response to UV	nucleus	myosin binding|protein self-association|RNA binding|Tat protein binding|transcription coactivator activity|translation initiation factor binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(2)|kidney(1)	3						ATGGCTGCAGCAGCAGCTTCT	0.522									Bardet-Biedl_syndrome				17	3					0	0	0.000743	0	0
TLR4	7099	broad.mit.edu	37	9	120475721	120475721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:120475721G>A	uc004bjz.2	+	3	1606	c.1315G>A	c.(1315-1317)GAG>AAG	p.E439K	TLR4_uc004bka.2_Missense_Mutation_p.E399K|TLR4_uc004bkb.2_Missense_Mutation_p.E239K	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	439	LRR 13.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						ACAAATGAGTGAGTTTTCAGT	0.388													76	10					0	0	0.003610	0	0
PSMD5	5711	broad.mit.edu	37	9	123589142	123589142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:123589142G>A	uc004bko.2	-	6	734	c.715C>T	c.(715-717)CAT>TAT	p.H239Y	PSMD5_uc011lye.1_Missense_Mutation_p.H196Y	NM_005047	NP_005038	Q16401	PSMD5_HUMAN	proteasome 26S non-ATPase subunit 5	239					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|proteasome regulatory particle assembly|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding				0						TGTCGCCCATGATGAGTATAT	0.353													68	21					0	0	0.003610	0	0
GSN	2934	broad.mit.edu	37	9	124074640	124074640	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:124074640C>T	uc004blf.1	+	5	751	c.690C>T	c.(688-690)TCC>TCT	p.S230S	GSN_uc004bld.1_Silent_p.S179S|GSN_uc010mvq.1_Silent_p.S190S|GSN_uc010mvr.1_Silent_p.S190S|GSN_uc010mvu.1_Silent_p.S179S|GSN_uc010mvt.1_Silent_p.S179S|GSN_uc010mvs.1_Silent_p.S179S|GSN_uc004ble.1_Silent_p.S179S|GSN_uc010mvv.1_Silent_p.S179S|GSN_uc011lyh.1_Silent_p.S196S|GSN_uc011lyi.1_Silent_p.S179S|GSN_uc011lyj.1_Silent_p.S203S|GSN_uc004blg.1_5'UTR	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	230	Gelsolin-like 2.				actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						GGTGTGGTTCCAACAGCAATC	0.612													75	13					0	0	0.003610	0	0
OR1L6	392390	broad.mit.edu	37	9	125512228	125512228	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:125512228C>T	uc011lzc.1	+	1	210	c.210C>T	c.(208-210)ATC>ATT	p.I70I		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	70	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTTCCTCATCATGTACCTGC	0.532													82	26					0	0	0.003610	0	0
GAPVD1	26130	broad.mit.edu	37	9	128061327	128061327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:128061327C>T	uc010mwx.2	+	4	453	c.127C>T	c.(127-129)CGT>TGT	p.R43C	GAPVD1_uc004bpo.2_Missense_Mutation_p.R43C|GAPVD1_uc011lzs.1_Missense_Mutation_p.R43C|GAPVD1_uc004bpp.2_Missense_Mutation_p.R43C|GAPVD1_uc004bpq.2_Missense_Mutation_p.R43C|GAPVD1_uc004bpr.2_Missense_Mutation_p.R43C|GAPVD1_uc004bps.2_Missense_Mutation_p.R43C|GAPVD1_uc010mwy.1_5'Flank	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	43					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AAAGTTGTATCGTACAGCATG	0.403													55	10					0	0	0.003610	0	0
ZBTB34	403341	broad.mit.edu	37	9	129641834	129641834	+	Silent	SNP	A	G	G			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:129641834A>G	uc004bqm.3	+	2	241	c.144A>G	c.(142-144)GCA>GCG	p.A48A		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	48	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCCACAAAGCAGTCCTTGCTG	0.498													76	13					0	0	0.003610	0	0
ZNF79	7633	broad.mit.edu	37	9	130198199	130198199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:130198199C>T	uc004bqw.3	+	4	659	c.245C>T	c.(244-246)TCC>TTC	p.S82F	ZNF79_uc011maf.1_Missense_Mutation_p.S58F|ZNF79_uc011mag.1_Missense_Mutation_p.S58F	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	82	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						CTTCCAGTTTCCCAGCCTGGC	0.507													87	20					0	0	0.003610	0	0
STXBP1	6812	broad.mit.edu	37	9	130422359	130422359	+	Silent	SNP	C	T	T	rs149736085		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:130422359C>T	uc004brl.2	+	5	494	c.297C>T	c.(295-297)TAC>TAT	p.Y99Y	STXBP1_uc004brk.2_Silent_p.Y99Y	NM_001032221	NP_001027392	P61764	STXB1_HUMAN	syntaxin binding protein 1 isoform b	99					axon target recognition|energy reserve metabolic process|glutamate secretion|negative regulation of synaptic transmission, GABAergic|neurotransmitter secretion|platelet aggregation|platelet degranulation|protein transport|regulation of insulin secretion|regulation of synaptic vesicle priming|synaptic vesicle maturation|vesicle docking involved in exocytosis	cytosol|mitochondrion|plasma membrane|platelet alpha granule|protein complex	identical protein binding|syntaxin-1 binding|syntaxin-2 binding			skin(1)	1						CTGCTAAATACCGGGCTGCAC	0.527													37	7					0	0	0.002222	0	0
CDK9	1025	broad.mit.edu	37	9	130550269	130550269	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:130550269C>T	uc004bse.2	+	4	432	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_001261	NP_001252	P50750	CDK9_HUMAN	cyclin-dependent kinase 9	103	Protein kinase.				cell proliferation|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription elongation factor complex	ATP binding|cyclin-dependent protein kinase activity|DNA binding|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(1)	1						ACCTGGTGTTCGACTTCTGCG	0.488													53	11					0	0	0.003610	0	0
PIP5KL1	138429	broad.mit.edu	37	9	130688231	130688231	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:130688231G>A	uc011mao.1	-	8	723	c.678C>T	c.(676-678)AGC>AGT	p.S226S	PIP5KL1_uc004bsu.2_Silent_p.S23S	NM_001135219	NP_001128691	Q5T9C9	PI5L1_HUMAN	phosphatidylinositol-4-phosphate 5-kinase-like 1	226	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			lung(1)|kidney(1)	2						CCACCCAGCGGCTCACCTCGC	0.562													29	6					0	0	0.001512	0	0
SLC27A4	10999	broad.mit.edu	37	9	131117433	131117433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:131117433G>A	uc004but.2	+	10	1710	c.1426G>A	c.(1426-1428)GAT>AAT	p.D476N	SLC27A4_uc004buu.2_Intron	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	476					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						GATTGCCAAGGATGTCTTCAA	0.627													14	2					0	0	0.002450	0	0
C9orf106	414318	broad.mit.edu	37	9	132084114	132084114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:132084114G>A	uc004bxs.2	+	2	75	c.22G>A	c.(22-24)GAT>AAT	p.D8N		NM_001012715	NP_001012733	Q8NAJ2	CI106_HUMAN	hypothetical protein LOC414318	8											0		Ovarian(14;0.00556)|Medulloblastoma(224;0.235)				gGCCTTGAGCGATAAACCTCA	0.184													34	2					0	0	0.004289	0	0
FIBCD1	84929	broad.mit.edu	37	9	133779687	133779687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:133779687C>T	uc004bzz.2	-	7	1395	c.1150G>A	c.(1150-1152)GGC>AGC	p.G384S	FIBCD1_uc011mcc.1_Missense_Mutation_p.G384S	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	384	Fibrinogen C-terminal.|Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		AACCTCATGCCGCTGTGCTTC	0.632													50	10					0	0	0.003610	0	0
LAMC3	10319	broad.mit.edu	37	9	133901756	133901757	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:133901756_133901757CC>TT	uc004caa.1	+	2	556_557	c.458_459CC>TT	c.(457-459)GCC>GTT	p.A153V		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	153	Laminin N-terminal.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CGCAGCCGCGCCGACGGCCCAT	0.644													35	3					0	0	0.004672	0	0
C9orf98	158067	broad.mit.edu	37	9	135601098	135601098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:135601098G>A	uc004cbu.1	-	13	1973	c.1417C>T	c.(1417-1419)CCC>TCC	p.P473S	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_Missense_Mutation_p.P269S	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	473	Adenylate kinase.					cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		TTGGGCAGGGGATTAATGATC	0.582													10	1					0	0	0.001855	0	0
CEL	1056	broad.mit.edu	37	9	135946631	135946631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:135946631C>T	uc010naa.1	+	11	1767	c.1751C>T	c.(1750-1752)CCC>CTC	p.P584L		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	581	3.|17 X 11 AA tandem repeats, glycodomain, O-linked (mucin type).				cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		GAGACCGCCCCCGTGCCGCCC	0.801													42	7					0	0	0.002522	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136302972	136302973	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:136302972_136302973CC>TT	uc004cdv.3	+	13	1983_1984	c.1539_1540CC>TT	c.(1537-1542)CCCCGG>CCTTGG	p.R514W	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Missense_Mutation_p.R514W|ADAMTS13_uc004cdu.1_Missense_Mutation_p.R483W|ADAMTS13_uc004cdw.3_Missense_Mutation_p.R514W|ADAMTS13_uc004cdx.3_Missense_Mutation_p.R483W|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Missense_Mutation_p.R184W|ADAMTS13_uc004cds.1_Intron|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	514					cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CAAGTGGCCCCCGGGAGGACGG	0.629													60	18					0	0	0.004672	0	0
COL5A1	1289	broad.mit.edu	37	9	137619233	137619233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:137619233C>T	uc004cfe.2	+	5	1158	c.776C>T	c.(775-777)CCA>CTA	p.P259L		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	259	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GACCCCAATCCAGATGAATAT	0.522													37	6					0	0	0.004289	0	0
KIAA0649	9858	broad.mit.edu	37	9	138377233	138377233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:138377233C>T	uc004cfr.1	+	4	1426	c.877C>T	c.(877-879)CCC>TCC	p.P293S		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	293						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		CCGCAAACCTCCCCGGTTAGC	0.617													76	16					0	0	0.003610	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713098	138713098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:138713098G>A	uc004cgr.3	-	11	3409	c.3409C>T	c.(3409-3411)CCT>TCT	p.P1137S	CAMSAP1_uc004cgq.3_Missense_Mutation_p.P1027S|CAMSAP1_uc010nbg.2_Missense_Mutation_p.P859S	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1137						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CTGCTGGCAGGGAAGGGTCTC	0.637													54	13					0	0	0.003610	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138714338	138714338	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:138714338G>A	uc004cgr.3	-	11	2169	c.2169C>T	c.(2167-2169)CCC>CCT	p.P723P	CAMSAP1_uc004cgq.3_Silent_p.P613P|CAMSAP1_uc010nbg.2_Silent_p.P445P	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	723						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CGTGGGAGTTGGGGCTTTTTG	0.552													28	6					0	0	0.001271	0	0
UBAC1	10422	broad.mit.edu	37	9	138831522	138831522	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:138831522G>A	uc004cgt.2	-	8	1178	c.960C>T	c.(958-960)GCC>GCT	p.A320A	UBAC1_uc004cgs.1_Silent_p.A320A|UBAC1_uc004cgu.2_RNA	NM_016172	NP_057256	Q9BSL1	UBAC1_HUMAN	ubiquitin associated domain containing 1	320	UBA 2.					Golgi apparatus|plasma membrane	protein binding			skin(2)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.1e-06)|Epithelial(140;7.79e-06)		CACTCACCGCGGCATTCTGCT	0.323													41	9					0	0	0.002222	0	0
SEC16A	9919	broad.mit.edu	37	9	139369688	139369688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:139369688G>A	uc004chx.2	-	3	2689	c.2380C>T	c.(2380-2382)CCT>TCT	p.P794S	SEC16A_uc004chv.3_Missense_Mutation_p.P421S|SEC16A_uc004chw.2_Missense_Mutation_p.P794S|SEC16A_uc010nbn.2_Missense_Mutation_p.P794S|SEC16A_uc010nbo.1_Missense_Mutation_p.P794S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	616					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		ATTTTGGGAGGATTCTCAAGG	0.582													25	5					0	0	0.003954	0	0
ABCA2	20	broad.mit.edu	37	9	139905529	139905529	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:139905529G>A	uc011mem.1	-	38	6097	c.5949C>T	c.(5947-5949)TTC>TTT	p.F1983F	ABCA2_uc011mel.1_Silent_p.F1984F|ABCA2_uc004ckl.1_Silent_p.F1914F|ABCA2_uc004ckm.1_Silent_p.F2014F	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1983					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		TGTCCCACTCGAACGGGGACT	0.672													18	5					0	0	0.004990	0	0
ABCA2	20	broad.mit.edu	37	9	139911795	139911795	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:139911795G>A	uc011mem.1	-	17	2551	c.2403C>T	c.(2401-2403)TTC>TTT	p.F801F	ABCA2_uc011mel.1_Silent_p.F802F|ABCA2_uc004ckl.1_Silent_p.F732F|ABCA2_uc004ckm.1_Silent_p.F832F|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	801	Helical; (Potential).				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CAGACACCAGGAAGCTGGGTG	0.672													21	4					0	0	0.002299	0	0
EXD3	54932	broad.mit.edu	37	9	140242631	140242631	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:140242631G>A	uc004cmp.2	-	17	2086	c.1890C>T	c.(1888-1890)TTC>TTT	p.F630F	C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_RNA	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	630					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						ACACCACACGGAAGGCCCTGG	0.667													14	6					0	0	0.004007	0	0
EHMT1	79813	broad.mit.edu	37	9	140638380	140638380	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr9:140638380C>T	uc011mfc.1	+	6	1045	c.1008C>T	c.(1006-1008)AGC>AGT	p.S336S	EHMT1_uc004coa.2_Silent_p.S336S|EHMT1_uc004cob.1_Silent_p.S305S	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	336					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		GCGCCAGCAGCCTGCACGTGA	0.612													14	2					0	0	0.002450	0	0
MXRA5	25878	broad.mit.edu	37	X	3229200	3229200	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:3229200G>A	uc004crg.3	-	7	7201	c.7044C>T	c.(7042-7044)ATC>ATT	p.I2348I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2348	Ig-like C2-type 8.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCTTGTTCCGGATGGTGGCGG	0.557													49	8					0	0	0.003610	0	0
MXRA5	25878	broad.mit.edu	37	X	3239094	3239094	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:3239094C>T	uc004crg.3	-	5	4789	c.4632G>A	c.(4630-4632)GTG>GTA	p.V1544V		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1544						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTTCATTGTTCACTGGGGTTG	0.418													69	5					0	0	0.003610	0	0
MXRA5	25878	broad.mit.edu	37	X	3240723	3240724	+	Missense_Mutation	DNP	AA	GG	GG			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:3240723_3240724AA>GG	uc004crg.3	-	5	3159_3160	c.3002_3003TT>CC	c.(3001-3003)CTT>CCC	p.L1001P		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1001						extracellular region		p.L1001F(1)		ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGGTTGGAGTAAGGTGTGCAAA	0.465													39	5					0	0	0.004672	0	0
VCX	26609	broad.mit.edu	37	X	7811698	7811698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:7811698G>A	uc004crz.2	+	3	481	c.262G>A	c.(262-264)GAG>AAG	p.E88K		NM_013452	NP_038480	Q9H320	VCX1_HUMAN	variable charge, X chromosome	88	Glu-rich.				chromatin organization|ribosome assembly|spermatogenesis	nucleolus	chromatin binding				0		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)				CCCTCAGCACGAGCTGCCGCC	0.711													15	32					0	0	0.001882	0	0
WWC3	55841	broad.mit.edu	37	X	10094265	10094265	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:10094265C>T	uc004csx.3	+	15	2223	c.2025C>T	c.(2023-2025)CCC>CCT	p.P675P	WWC3_uc010nds.2_Silent_p.P339P|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	675	C2.									ovary(4)	4						TCAGAATCCCCGTGCATTCCA	0.557													38	13					0	0	0.005524	0	0
OFD1	8481	broad.mit.edu	37	X	13778281	13778281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:13778281C>T	uc004cvp.3	+	16	2061	c.1702C>T	c.(1702-1704)CGT>TGT	p.R568C	OFD1_uc004cvr.3_Missense_Mutation_p.R135C|OFD1_uc011mil.1_Missense_Mutation_p.R135C|OFD1_uc004cvq.3_Missense_Mutation_p.R428C|OFD1_uc010nen.2_Missense_Mutation_p.R567C|OFD1_uc004cvs.3_RNA|OFD1_uc004cvu.3_Missense_Mutation_p.R527C|OFD1_uc004cvv.3_Missense_Mutation_p.R527C	NM_003611	NP_003602	O75665	OFD1_HUMAN	oral-facial-digital syndrome 1	568					cilium movement involved in determination of left/right asymmetry|G2/M transition of mitotic cell cycle	centriole|cilium|cytosol|microtubule basal body|nuclear membrane	alpha-tubulin binding|gamma-tubulin binding				0						TGTGATCGATCGTTCTGTCAA	0.418													47	14					0	0	0.003610	0	0
GLRA2	2742	broad.mit.edu	37	X	14548226	14548226	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:14548226T>A	uc010nep.2	+	2	379	c.47T>A	c.(46-48)TTC>TAC	p.F16Y	GLRA2_uc010neq.2_Missense_Mutation_p.F16Y|GLRA2_uc004cwe.3_Missense_Mutation_p.F16Y|GLRA2_uc011mio.1_5'UTR|GLRA2_uc011mip.1_5'Flank	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	16					neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	TTTGCATTTTTCTTAGAGACA	0.368													18	8					0	0	0.003330	0	0
REPS2	9185	broad.mit.edu	37	X	17153431	17153431	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:17153431C>T	uc004cxv.1	+	16	1881	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F	REPS2_uc004cxw.1_Silent_p.F569F|REPS2_uc011miw.1_Silent_p.F368F	NM_004726	NP_004717	Q8NFH8	REPS2_HUMAN	RALBP1 associated Eps domain containing 2	570	Interaction with ASAP1 (By similarity).|Interaction with RALBP1.				epidermal growth factor receptor signaling pathway|protein complex assembly	cytoplasm	calcium ion binding|protein binding			skin(2)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					GTAGGAAATTCAGACCAGAAA	0.418													69	13					0	0	0.003610	0	0
PHKA2	5256	broad.mit.edu	37	X	18972393	18972393	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:18972393G>A	uc004cyv.3	-	2	646	c.216C>T	c.(214-216)GCC>GCT	p.A72A	PHKA2_uc010nfh.1_RNA|PHKA2_uc010nfi.1_Silent_p.A14A	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	72					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					CGTAGGCCTTGGCCTTGTCCT	0.552													30	10					0	0	0.004289	0	0
SMPX	23676	broad.mit.edu	37	X	21761903	21761903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:21761903G>A	uc004daa.2	-	3	280	c.97C>T	c.(97-99)CCC>TCC	p.P33S		NM_014332	NP_055147	Q9UHP9	SMPX_HUMAN	small muscle protein, X-linked	33					striated muscle contraction						0						TTTCTTCTGGGGGGTTGACCT	0.443													48	12					0	0	0.003610	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212488	26212488	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:26212488G>A	uc004dbr.2	+	2	674	c.525G>A	c.(523-525)GAG>GAA	p.E175E	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	175										ovary(3)	3						GTGAAGATGAGGAAAGTGTAA	0.507													21	4					0	0	0.001882	0	0
GK	2710	broad.mit.edu	37	X	30714762	30714762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:30714762C>T	uc004dch.3	+	8	870	c.691C>T	c.(691-693)CCA>TCA	p.P231S	GK_uc010ngj.2_Missense_Mutation_p.P231S|GK_uc004dci.3_Missense_Mutation_p.P231S|GK_uc011mjz.1_Missense_Mutation_p.P26S|GK_uc011mka.1_Missense_Mutation_p.P68S|GK_uc010ngk.2_Missense_Mutation_p.P26S	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	231					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						GGAAATTCTTCCAAATGTCCG	0.219													44	9					0	0	0.003610	0	0
FAM47A	158724	broad.mit.edu	37	X	34148524	34148524	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:34148524G>A	uc004ddg.2	-	1	1905	c.1872C>T	c.(1870-1872)TCC>TCT	p.S624S		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	624										ovary(4)|central_nervous_system(1)	5						GATTCCTGATGGATTCTTCAT	0.438													26	3					0	0	0.004656	0	0
FAM47B	170062	broad.mit.edu	37	X	34962065	34962065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:34962065G>A	uc004ddi.1	+	1	1135	c.1117G>A	c.(1117-1119)GAA>AAA	p.E373K		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	373										ovary(3)|breast(1)	4						GACAACCGAGGAACTCACCAA	0.547													11	2					0	0	0.000673	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820403	35820403	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:35820403C>T	uc010ngt.1	+	2	369	c.90C>T	c.(88-90)GTC>GTT	p.V30V		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	30										lung(3)|ovary(2)|breast(1)|skin(1)	7						TTGCACAGGTCTCCAAGGCTC	0.557													17	3					0	0	0.004007	0	0
FAM47C	442444	broad.mit.edu	37	X	37026573	37026573	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:37026573C>T	uc004ddl.1	+	1	104	c.90C>T	c.(88-90)TTC>TTT	p.F30F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	30										ovary(3)	3						CCAAGTACTTCGCGAAGCGCA	0.642													8	1					0	0	0.000443	0	0
FAM47C	442444	broad.mit.edu	37	X	37028481	37028481	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:37028481C>T	uc004ddl.1	+	1	2012	c.1998C>T	c.(1996-1998)CTC>CTT	p.L666L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	666										ovary(3)	3						TGTCCAGTCTCCCCCCGGAGC	0.637													9	7					0	0	0.002450	0	0
FAM47C	442444	broad.mit.edu	37	X	37029030	37029030	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:37029030G>A	uc004ddl.1	+	1	2561	c.2547G>A	c.(2545-2547)TCG>TCA	p.S849S		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	849										ovary(3)	3						GACACACATCGAGAAAACTCC	0.468													35	6					0	0	0.001485	0	0
BCOR	54880	broad.mit.edu	37	X	39923790	39923791	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:39923790_39923791GA>AT	uc004den.3	-	7	3592_3593	c.3300_3301TC>AT	c.(3298-3303)CTTCCT>CTATCT	p.P1101S	BCOR_uc004dep.3_Missense_Mutation_p.P1101S|BCOR_uc004deo.3_Missense_Mutation_p.P1083S|BCOR_uc010nhb.2_5'Flank|BCOR_uc004dem.3_Missense_Mutation_p.P1101S	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	1101					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						TTCTCCACAGGAAGATCTTTGT	0.589													23	4					0	0	0.004672	0	0
MED14	9282	broad.mit.edu	37	X	40572218	40572218	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:40572218A>T	uc004dex.3	-	6	869	c.729T>A	c.(727-729)GTT>GTA	p.V243V	MED14_uc010nhe.1_Silent_p.V127V	NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	243	Interaction with STAT2.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						GACGCCATGGAACATCAGGGT	0.373													13	2					0	0	0.001855	0	0
DDX3X	1654	broad.mit.edu	37	X	41203558	41203558	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:41203558C>T	uc004dfe.2	+	10	1786	c.931C>T	c.(931-933)CGA>TGA	p.R311*	DDX3X_uc010nhf.1_Nonsense_Mutation_p.R295*|DDX3X_uc004dff.2_Nonsense_Mutation_p.R311*|DDX3X_uc011mkq.1_Nonsense_Mutation_p.R295*|DDX3X_uc011mkr.1_Nonsense_Mutation_p.R311*|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	311	Necessary for interaction with XPO1.|Helicase ATP-binding.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						TCAGCAGATTCGAGACTTGGA	0.408										HNSCC(61;0.18)			108	18					0	0	0.003610	0	0
CASK	8573	broad.mit.edu	37	X	41437616	41437616	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:41437616G>A	uc004dfl.3	-	15	1526	c.1480C>T	c.(1480-1482)CAA>TAA	p.Q494*	CASK_uc004dfj.3_Nonsense_Mutation_p.Q57*|CASK_uc004dfk.3_Nonsense_Mutation_p.Q309*|CASK_uc004dfm.3_Nonsense_Mutation_p.Q494*|CASK_uc004dfn.3_Nonsense_Mutation_p.Q488*	NM_003688	NP_003679	O14936	CSKP_HUMAN	calcium/calmodulin-dependent serine protein	494	PDZ.				cell adhesion	actin cytoskeleton|cytoplasm|nucleus|plasma membrane	ATP binding|calmodulin binding|guanylate kinase activity|protein serine/threonine kinase activity			ovary(3)|lung(2)|stomach(1)	6						GTGTTCTTTTGAAACTGTACC	0.423													18	2					0	0	0.001523	0	0
SSX5	6758	broad.mit.edu	37	X	48047102	48047102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:48047102C>T	uc004dja.1	-	7	585	c.532G>A	c.(532-534)GAA>AAA	p.E178K	SSX5_uc004diz.1_Missense_Mutation_p.E219K	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						CTGATCTCTTCATAAATCACC	0.488													96	22					0	0	0.003610	0	0
SSX7	280658	broad.mit.edu	37	X	52677369	52677369	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:52677369C>T	uc004dqx.1	-	6	567	c.408G>A	c.(406-408)GGG>GGA	p.G136G		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	136					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					ACAGGTGTTTCCCATCGTTCT	0.483													77	18					0	0	0.003610	0	0
FAM120C	54954	broad.mit.edu	37	X	54161361	54161361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:54161361G>A	uc004dsz.3	-	7	1602	c.1519C>T	c.(1519-1521)CCC>TCC	p.P507S	FAM120C_uc011moh.1_Missense_Mutation_p.P507S	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	507										ovary(1)|central_nervous_system(1)	2						AGGTAATTGGGAAACTGGGAT	0.512													19	3					0	0	0.001523	0	0
FOXR2	139628	broad.mit.edu	37	X	55650562	55650562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:55650562C>T	uc004duo.2	+	1	730	c.418C>T	c.(418-420)CCT>TCT	p.P140S		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	140					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						TGAGCAGTCTCCTTTACAGAA	0.517													11	2					0	0	0.000978	0	0
FAM123B	139285	broad.mit.edu	37	X	63409897	63409897	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:63409897G>A	uc004dvo.2	-	2	3543	c.3270C>T	c.(3268-3270)GTC>GTT	p.V1090V		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	1090	Pro-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						GCTCAGGCCGGACCCTGGGCA	0.627													6	2					0	0	0.003080	0	0
EDA2R	60401	broad.mit.edu	37	X	65825019	65825019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:65825019G>A	uc004dwq.2	-	2	148	c.137C>T	c.(136-138)CCT>CTT	p.P46L	EDA2R_uc004dwr.2_Missense_Mutation_p.P46L|EDA2R_uc004dws.2_Missense_Mutation_p.P46L|EDA2R_uc011mpb.1_RNA|EDA2R_uc011mpc.1_Intron|EDA2R_uc010nkt.1_Missense_Mutation_p.P46L|EDA2R_uc004dwt.1_Missense_Mutation_p.P46L	NM_021783	NP_068555	Q9HAV5	TNR27_HUMAN	X-linked ectodysplasin receptor	46	Extracellular (Potential).|TNFR-Cys 2.				cell differentiation|embryo development|epidermis development|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	tumor necrosis factor receptor activity			upper_aerodigestive_tract(1)	1						GTACCTGCGAGGAGGGCAGGC	0.512													8	0					0	0	0.000443	0	0
IGBP1	3476	broad.mit.edu	37	X	69366643	69366643	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:69366643A>T	uc004dxv.2	+	3	1142	c.643A>T	c.(643-645)ATA>TTA	p.I215L	IGBP1_uc004dxw.2_Missense_Mutation_p.I215L	NM_001551	NP_001542	P78318	IGBP1_HUMAN	immunoglobulin binding protein 1	215					B cell activation|negative regulation of caspase activity|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|regulation of microtubule-based movement|response to interleukin-1|response to tumor necrosis factor|signal transduction	cytoplasm	protein phosphatase type 2A regulator activity			kidney(1)|pancreas(1)	2						TGACCAGGAAATAAAGATCCT	0.408													12	6					0	0	0.001855	0	0
MED12	9968	broad.mit.edu	37	X	70344182	70344182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:70344182C>T	uc004dyy.2	+	13	2117	c.1918C>T	c.(1918-1920)CCT>TCT	p.P640S	MED12_uc011mpq.1_Missense_Mutation_p.P640S|MED12_uc004dyz.2_Missense_Mutation_p.P640S|MED12_uc004dza.2_Missense_Mutation_p.P487S	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	640					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					CTTTGATGATCCTGCCGATGA	0.542													3	2					0	0	0.004672	0	0
TAF1	6872	broad.mit.edu	37	X	70607247	70607247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:70607247C>T	uc004dzu.3	+	15	2411	c.2360C>T	c.(2359-2361)CCC>CTC	p.P787L	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.P808L|TAF1_uc004dzv.3_5'Flank	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	787					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				CAGCAGTGTCCCTTGTTTGAA	0.443													31	5					0	0	0.002836	0	0
CXCR3	2833	broad.mit.edu	37	X	70836739	70836739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:70836739C>T	uc004eaf.2	-	2	651	c.583G>A	c.(583-585)GAC>AAC	p.D195N	BCYRN1_uc011mpt.1_Intron|CXCR3_uc011mpx.1_Missense_Mutation_p.D242N	NM_001504	NP_001495	P49682	CXCR3_HUMAN	chemokine (C-X-C motif) receptor 3 isoform A	195	Extracellular (Potential).				cell adhesion|cellular component movement|chemotaxis|elevation of cytosolic calcium ion concentration	cytoplasm|integral to plasma membrane	C-X-C chemokine receptor activity			ovary(2)|central_nervous_system(1)	3	Renal(35;0.156)					AGGCGCTCGTCGTGGTGGGCC	0.587													19	7					0	0	0.002780	0	0
NHSL2	340527	broad.mit.edu	37	X	71360221	71360221	+	Silent	SNP	A	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:71360221A>T	uc011mqa.1	+	6	2823	c.2823A>T	c.(2821-2823)TCA>TCT	p.S941S	NHSL2_uc004eak.1_Silent_p.S575S|NHSL2_uc010nli.2_Silent_p.S710S	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	941											0	Renal(35;0.156)					CAGGGGAGTCAACAGCACCCT	0.547													13	1					0	0	0.001855	0	0
TSIX	9383	broad.mit.edu	37	X	73045928	73045928	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:73045928C>T	uc004ebn.2	+	1		c.33889C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CTAGAAATCCCAAACCCCAGA	0.493													33	8					0	0	0.002445	0	0
XIST	7503	broad.mit.edu	37	X	73050937	73050937	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:73050937C>T	uc004ebm.1	-	4		c.11746G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						ACTTTATCTTCCTATCTGGGA	0.443													7	6					0	0	0.004482	0	0
XIST	7503	broad.mit.edu	37	X	73062187	73062187	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:73062187G>A	uc004ebm.1	-	1		c.10402C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGTGTACACTGGAAACACAAA	0.443													5	1					0	0	0.001168	0	0
XIST	7503	broad.mit.edu	37	X	73062678	73062678	+	RNA	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:73062678T>A	uc004ebm.1	-	1		c.9911A>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CAGCACAATCTTACCTAATAG	0.493													25	5					0	0	0.003330	0	0
XIST	7503	broad.mit.edu	37	X	73063783	73063783	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:73063783C>T	uc004ebm.1	-	1		c.8806G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GTTGATAGTCCACCAGAAGGG	0.408													19	2					0	0	0.000743	0	0
XIST	7503	broad.mit.edu	37	X	73068992	73068992	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:73068992G>A	uc004ebm.1	-	1		c.3597C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TAGTCTTCATGATTAATGGGT	0.408													29	2					0	0	0.001786	0	0
RLIM	51132	broad.mit.edu	37	X	73811373	73811373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:73811373G>A	uc004ebu.2	-	5	2067	c.1777C>T	c.(1777-1779)CAT>TAT	p.H593Y	RLIM_uc004ebw.2_Missense_Mutation_p.H593Y	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	593	RING-type.				random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CAGTGGACATGGTACTCATGG	0.393													24	5					0	0	0.003330	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963455	73963455	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:73963455G>A	uc004eby.2	-	3	1554	c.937C>T	c.(937-939)CGA>TGA	p.R313*		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	313					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GATTCATATCGAATTTTCAGG	0.418													40	11					0	0	0.001951	0	0
MIR325	442899	broad.mit.edu	37	X	76225921	76225921	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:76225921C>T	hsa-mir-325|MI0000824	-			c.6C>T			uc010nlv.1_Intron																	0						gaaccaagcactgtattggtt	0.139													61	13					0	0	0.003610	0	0
P2RY10	27334	broad.mit.edu	37	X	78216791	78216791	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:78216791C>T	uc004ede.2	+	4	1143	c.774C>T	c.(772-774)CCC>CCT	p.P258P	P2RY10_uc004edf.2_Silent_p.P258P	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	258	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						GCTTCACTCCCTATCATATTA	0.453													39	5					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	X	80185378	80185378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:80185378G>A	uc004eec.1	+	1	451	c.277G>A	c.(277-279)GAC>AAC	p.D93N						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		CCTGGGCTGCGACATGGTTTT	0.493													16	3					0	0	0.001216	0	0
Unknown	0	broad.mit.edu	37	X	80185618	80185618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:80185618C>T	uc004eec.1	+	1	691	c.517C>T	c.(517-519)CTT>TTT	p.L173F						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		CACCGTCAATCTTGCCTGGAC	0.493													25	6					0	0	0.001512	0	0
CYLC1	1538	broad.mit.edu	37	X	83128069	83128069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:83128069C>T	uc004eei.1	+	4	374	c.353C>T	c.(352-354)TCC>TTC	p.S118F	CYLC1_uc004eeh.1_Missense_Mutation_p.S117F	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	118					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						TATAAAAAGTCCAAAGATGAA	0.373													12	1					0	0	0.000978	0	0
SATL1	340562	broad.mit.edu	37	X	84362877	84362877	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:84362877C>T	uc011mqx.1	-	1	1098	c.1098G>A	c.(1096-1098)ACG>ACA	p.T366T	SATL1_uc004een.2_Silent_p.T366T	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	179	Gln-rich.						N-acetyltransferase activity			breast(2)	2						CTGCTTGGCTCGTGCTTGATT	0.532													26	6					0	0	0.001271	0	0
POF1B	79983	broad.mit.edu	37	X	84562249	84562249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:84562249C>T	uc004eer.2	-	11	1230	c.1084G>A	c.(1084-1086)GAT>AAT	p.D362N	POF1B_uc004ees.2_Missense_Mutation_p.D362N	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	362	Potential.						actin binding				0						AATGATAAATCTTTCTCAAGT	0.328													16	1					0	0	0.000743	0	0
KLHL4	56062	broad.mit.edu	37	X	86772938	86772938	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:86772938C>T	uc004efb.2	+	1	224	c.42C>T	c.(40-42)ATC>ATT	p.I14I	KLHL4_uc004efa.2_Silent_p.I14I	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	14						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TGAAACAGATCCTAAGGCTAC	0.478													56	19					0	0	0.003610	0	0
RPA4	29935	broad.mit.edu	37	X	96140057	96140057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:96140057C>T	uc004efv.3	+	1	1046	c.748C>T	c.(748-750)CCC>TCC	p.P250S	DIAPH2_uc004eft.3_Intron|DIAPH2_uc004efu.3_Intron|DIAPH2_uc004efs.2_Intron	NM_013347	NP_037479	Q13156	RFA4_HUMAN	replication protein A4, 34kDa	250					DNA damage checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair	DNA replication factor A complex|nucleoplasm	single-stranded DNA binding				0						CCACATCTATCCCACTGTGGA	0.498								Other_identified_genes_with_known_or_suspected_DNA_repair_function					36	4					0	0	0.001706	0	0
CSTF2	1478	broad.mit.edu	37	X	100078283	100078283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:100078283C>T	uc004egh.2	+	4	368	c.310C>T	c.(310-312)CTT>TTT	p.L104F	CSTF2_uc010nnd.2_Missense_Mutation_p.L104F|CSTF2_uc004egi.2_Missense_Mutation_p.L104F	NM_001325	NP_001316	P33240	CSTF2_HUMAN	cleavage stimulation factor subunit 2	104					mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cleavage body|mRNA cleavage and polyadenylation specificity factor complex	nucleotide binding|protein binding|protein binding|RNA binding			skin(1)	1						TTGATTAGGCCTTGGCACTGG	0.463													30	4					0	0	0.003271	0	0
XKRX	402415	broad.mit.edu	37	X	100169665	100169665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:100169665C>T	uc004egn.2	-	3	1617	c.1012G>A	c.(1012-1014)GAT>AAT	p.D338N	XKRX_uc011mre.1_Missense_Mutation_p.D134N	NM_212559	NP_997724	Q6PP77	XKR2_HUMAN	XK, Kell blood group complex subunit-related,	338						integral to membrane|plasma membrane				breast(1)	1						TCGACGAGATCTCTGTCTGCC	0.502													81	16					0	0	0.003610	0	0
GPRASP2	114928	broad.mit.edu	37	X	101971489	101971489	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:101971489C>T	uc004ejk.2	+	4	3026	c.1692C>T	c.(1690-1692)GTC>GTT	p.V564V	GPRASP2_uc004ejl.2_Silent_p.V564V|GPRASP2_uc004ejm.2_Silent_p.V564V|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	564						cytoplasm	protein binding			ovary(1)	1						ACCGGTCAGTCCGGGAAATTC	0.493													37	8					0	0	0.004878	0	0
NXF3	56000	broad.mit.edu	37	X	102333497	102333497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:102333497C>T	uc004eju.2	-	17	1513	c.1442G>A	c.(1441-1443)AGC>AAC	p.S481N	NXF3_uc010noi.1_Silent_p.Q327Q	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	481	Poly-Ser.|NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CCTGGAACTGCTGCCAGGGGT	0.547													47	7					0	0	0.003610	0	0
TEX13A	56157	broad.mit.edu	37	X	104463949	104463949	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:104463949G>A	uc004ema.2	-	5	1039	c.927C>T	c.(925-927)TCC>TCT	p.S309S	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.P310L	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	309						intracellular	zinc ion binding			ovary(2)	2						CTGAGAAGGAGGAAAAAGGGC	0.532													18	5					0	0	0.001523	0	0
SERPINA7	6906	broad.mit.edu	37	X	105279185	105279185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:105279185G>A	uc004eme.1	-	2	830	c.814C>T	c.(814-816)CCC>TCC	p.P272S	SERPINA7_uc010npd.2_Missense_Mutation_p.P272S|SERPINA7_uc010npe.1_Missense_Mutation_p.P272S	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	272					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	CCCTCCTTGGGAAGAACAAAG	0.458													49	8					0	0	0.003610	0	0
COL4A6	1288	broad.mit.edu	37	X	107414671	107414671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:107414671C>T	uc004enw.3	-	33	3329	c.3226G>A	c.(3226-3228)GAA>AAA	p.E1076K	COL4A6_uc004env.3_Missense_Mutation_p.E1075K|COL4A6_uc011msn.1_Missense_Mutation_p.E1075K|COL4A6_uc010npk.2_Missense_Mutation_p.E1075K	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1076	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CCGGAAATTTCAACTGTCTGG	0.433									Alport_syndrome_with_Diffuse_Leiomyomatosis				35	9					0	0	0.001287	0	0
COL4A5	1287	broad.mit.edu	37	X	107814643	107814643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:107814643G>A	uc004enz.1	+	7	587	c.385G>A	c.(385-387)GGA>AGA	p.G129R	COL4A5_uc011mso.1_Missense_Mutation_p.G129R	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	129	Triple-helical region.		G -> V (in APSX; juvenile type).|G -> E (in APSX; juvenile type).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CTCCTTCTAGGGAGAACGTGG	0.358									Alport_syndrome_with_Diffuse_Leiomyomatosis				93	25					0	0	0.003610	0	0
COL4A5	1287	broad.mit.edu	37	X	107869005	107869005	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:107869005C>T	uc004enz.1	+	35	3289	c.3087C>T	c.(3085-3087)ATC>ATT	p.I1029I	COL4A5_uc011mso.1_Silent_p.I1029I|COL4A5_uc004eob.1_Silent_p.I637I	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1029	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						AAGGAACCATCGGTGATATGG	0.413									Alport_syndrome_with_Diffuse_Leiomyomatosis				22	6					0	0	0.004656	0	0
TDGF3	6998	broad.mit.edu	37	X	109764320	109764320	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:109764320G>A	uc004eos.1	+	1		c.781G>A				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						GAATTAAAGCGATGCTAACGC	0.408													18	6					0	0	0.000958	0	0
TDGF3	6998	broad.mit.edu	37	X	109764416	109764416	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:109764416C>T	uc004eos.1	+	1		c.877C>T				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						ATGGCCATTTCTAAAGCCTTT	0.502													18	9					0	0	0.004990	0	0
PAK3	5063	broad.mit.edu	37	X	110435809	110435809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:110435809G>A	uc004epa.2	+	10	1027	c.1000G>A	c.(1000-1002)GAA>AAA	p.E334K	PAK3_uc010npt.1_Missense_Mutation_p.E319K|PAK3_uc010npu.1_Missense_Mutation_p.E319K|PAK3_uc004eoy.1_Missense_Mutation_p.E74K|PAK3_uc004eoz.2_Missense_Mutation_p.E319K|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.E355K|PAK3_uc010npw.1_Missense_Mutation_p.E340K	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	334	Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						GGTCATGAGGGAAAATAAGAA	0.308										TSP Lung(19;0.15)			18	1					0	0	0.001216	0	0
PAK3	5063	broad.mit.edu	37	X	110439848	110439848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:110439848C>T	uc004epa.2	+	13	1459	c.1432C>T	c.(1432-1434)CTT>TTT	p.L478F	PAK3_uc010npt.1_Missense_Mutation_p.L463F|PAK3_uc010npu.1_Missense_Mutation_p.L463F|PAK3_uc004eoy.1_Missense_Mutation_p.L218F|PAK3_uc004eoz.2_Missense_Mutation_p.L463F|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.L499F|PAK3_uc010npw.1_Missense_Mutation_p.L484F	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	478	Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						ACCCCCTTACCTTAATGAAAA	0.438										TSP Lung(19;0.15)			25	5					0	0	0.001061	0	0
CAPN6	827	broad.mit.edu	37	X	110491989	110491989	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:110491989T>C	uc004epc.1	-	10	1460	c.1292A>G	c.(1291-1293)AAC>AGC	p.N431S	CAPN6_uc011msu.1_Missense_Mutation_p.N176S	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	431	Domain III.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						GAATTTGCGGTTCATCTCCAC	0.448													20	6					0	0	0.002299	0	0
DCX	1641	broad.mit.edu	37	X	110574170	110574170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:110574170C>T	uc004epd.2	-	5	1323	c.1151G>A	c.(1150-1152)CGA>CAA	p.R384Q	DCX_uc011msv.1_Missense_Mutation_p.R384Q|DCX_uc004epe.2_Missense_Mutation_p.R303Q|DCX_uc004epf.2_Missense_Mutation_p.R303Q|DCX_uc004epg.2_Missense_Mutation_p.R303Q	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	384	Pro/Ser-rich.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						AGACTTGCTTCGGCGCATAGG	0.527													43	8					0	0	0.002222	0	0
ALG13	79868	broad.mit.edu	37	X	110951451	110951451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:110951451C>T	uc011msy.1	+	4	614	c.580C>T	c.(580-582)CCT>TCT	p.P194S	ALG13_uc011msw.1_Missense_Mutation_p.P116S|ALG13_uc011msx.1_Missense_Mutation_p.P90S|ALG13_uc011msz.1_Missense_Mutation_p.P116S|ALG13_uc011mta.1_Missense_Mutation_p.P90S|ALG13_uc011mtb.1_Missense_Mutation_p.P90S			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	194					dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						CGCTTTTTTTCCTCTCCCTCT	0.468													23	6					0	0	0.001882	0	0
LRCH2	57631	broad.mit.edu	37	X	114347894	114347894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:114347894C>T	uc010nqe.2	-	21	2214	c.2183G>A	c.(2182-2184)AGA>AAA	p.R728K	LRCH2_uc004epz.2_Missense_Mutation_p.R711K	NM_020871	NP_065922	Q5VUJ6	LRCH2_HUMAN	leucine-rich repeats and calponin homology (CH)	728	CH.									ovary(1)	1						CAAACAAAGTCTTTCCTGGAG	0.328													13	5					0	0	0.002450	0	0
WDR44	54521	broad.mit.edu	37	X	117576579	117576579	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:117576579T>A	uc004eqn.2	+	17	2745	c.2320T>A	c.(2320-2322)TTG>ATG	p.L774M	WDR44_uc004eqo.2_Missense_Mutation_p.L774M|WDR44_uc011mtr.1_Missense_Mutation_p.L685M|WDR44_uc010nqi.2_Missense_Mutation_p.L484M	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	774	WD 5.					cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						TTTGAGAGATTTGTCACTATC	0.343													34	9					0	0	0.001706	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221966	118221966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:118221966G>A	uc004era.3	-	11	3227	c.3227C>T	c.(3226-3228)CCT>CTT	p.P1076L		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1076										ovary(4)|skin(1)	5						TGGTGCCACAGGACTGCTCCA	0.522													48	5					0	0	0.003610	0	0
AKAP14	158798	broad.mit.edu	37	X	119037548	119037548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:119037548C>T	uc004ese.2	+	4	398	c.260C>T	c.(259-261)TCG>TTG	p.S87L	AKAP14_uc004esd.2_Missense_Mutation_p.S87L|AKAP14_uc004esf.2_Missense_Mutation_p.S87L	NM_178813	NP_848928	Q86UN6	AKA28_HUMAN	A kinase (PRKA) anchor protein 14 isoform a	87						cytoplasm					0						GAATATTTTTCGGTAAGTTAG	0.413													17	2					0	0	0.004007	0	0
CUL4B	8450	broad.mit.edu	37	X	119664110	119664110	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:119664110C>T	uc004esw.2	-	21	2931	c.2494_splice	c.e21-1	p.V832_splice	CUL4B_uc010nqq.2_Splice_Site_p.V533_splice|CUL4B_uc004esv.2_Splice_Site_p.V814_splice	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1						cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						GTTCTTCAACCTAACAAAAAA	0.318													57	8					0	0	0.003610	0	0
CT47B1	643311	broad.mit.edu	37	X	120008882	120008882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:120008882C>T	uc011muc.1	-	1	898	c.643G>A	c.(643-645)GCC>ACC	p.A215T		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	215											0						GGCTCCCTGGCCATCTCGGCC	0.552													19	6					0	0	0.001523	0	0
ODZ1	10178	broad.mit.edu	37	X	123539080	123539080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:123539080C>T	uc004euj.2	-	26	5235	c.5171G>A	c.(5170-5172)GGT>GAT	p.G1724D	ODZ1_uc011muj.1_Missense_Mutation_p.G1730D|ODZ1_uc010nqy.2_Missense_Mutation_p.G1731D	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1724	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ACGCAGGGAACCATCTGGATT	0.542													20	5					0	0	0.001216	0	0
ODZ1	10178	broad.mit.edu	37	X	123556122	123556122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:123556122C>T	uc004euj.2	-	23	4514	c.4450G>A	c.(4450-4452)GGT>AGT	p.G1484S	ODZ1_uc011muj.1_Missense_Mutation_p.G1490S|ODZ1_uc010nqy.2_Missense_Mutation_p.G1491S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1484	Extracellular (Potential).|NHL 5.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding	p.F1484V(1)		ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AAGGTCATACCTGAAAAACAG	0.438													14	5					0	0	0.002450	0	0
ODZ1	10178	broad.mit.edu	37	X	123779147	123779147	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:123779147C>T	uc004euj.2	-	10	1786	c.1722G>A	c.(1720-1722)GAG>GAA	p.E574E	ODZ1_uc011muj.1_Silent_p.E573E|ODZ1_uc010nqy.2_Silent_p.E574E	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	574	EGF-like 2.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AGTGTCCTTTCTCGTATTCTC	0.502													89	14					0	0	0.003610	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185270	127185270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:127185270G>A	uc004eum.2	-	1	1113	c.916C>T	c.(916-918)CTC>TTC	p.L306F		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	306						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						CCAGGGAGGAGAGTGGTGCCC	0.502													27	5					0	0	0.001786	0	0
UTP14A	10813	broad.mit.edu	37	X	129045003	129045003	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:129045003C>T	uc004euz.2	+	5	286	c.258C>T	c.(256-258)GTC>GTT	p.V86V	UTP14A_uc011mup.1_Silent_p.V86V|UTP14A_uc011muq.1_Silent_p.V32V	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	86					rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						AAAAGCTGGTCCTTGCAGATC	0.428													51	6					0	0	0.003610	0	0
IGSF1	3547	broad.mit.edu	37	X	130409593	130409593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:130409593C>T	uc004ewd.2	-	16	3281	c.3043G>A	c.(3043-3045)GGA>AGA	p.G1015R	IGSF1_uc004ewe.3_Missense_Mutation_p.G1009R|IGSF1_uc004ewf.2_Missense_Mutation_p.G995R	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1015	Extracellular (Potential).|Ig-like C2-type 10.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CTGGTGGATCCCCAGAGCTGC	0.532													20	3					0	0	0.001882	0	0
MST4	51765	broad.mit.edu	37	X	131206371	131206371	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:131206371G>A	uc004ewk.1	+	9	1309	c.1008G>A	c.(1006-1008)AAG>AAA	p.K336K	MST4_uc004ewl.1_Silent_p.K259K|MST4_uc011mux.1_Silent_p.K358K|MST4_uc010nrj.1_Silent_p.K336K|MST4_uc004ewm.1_Silent_p.K274K	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1	336					cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					CTGATCCAAAGAAAGTACAGA	0.393													11	2					0	0	0.000978	0	0
USP26	83844	broad.mit.edu	37	X	132162061	132162061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:132162061G>A	uc010nrm.1	-	6	658	c.188C>T	c.(187-189)TCC>TTC	p.S63F	USP26_uc011mvf.1_Missense_Mutation_p.S63F	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	63					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TCCTCTATAGGATTTAAGGAC	0.323													25	8					0	0	0.001271	0	0
TFDP3	51270	broad.mit.edu	37	X	132351975	132351975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:132351975C>T	uc004exb.1	-	1	402	c.313G>A	c.(313-315)GAG>AAG	p.E105K		NM_016521	NP_057605	Q5H9I0	TFDP3_HUMAN	transcription factor Dp family, member 3	105						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCATTCTTCTCTCCTTTCCTG	0.582													31	6					0	0	0.003271	0	0
SAGE1	55511	broad.mit.edu	37	X	134988657	134988657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:134988657G>A	uc004ezh.2	+	7	850	c.683G>A	c.(682-684)CGG>CAG	p.R228Q	SAGE1_uc010nry.1_Missense_Mutation_p.R197Q|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	228										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					CTTCGACCACGGCGTATTAAT	0.418													43	18					0	0	0.003610	0	0
SAGE1	55511	broad.mit.edu	37	X	134992272	134992272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:134992272C>T	uc004ezh.2	+	15	1974	c.1807C>T	c.(1807-1809)CCA>TCA	p.P603S	SAGE1_uc010nry.1_Missense_Mutation_p.P572S|SAGE1_uc011mvv.1_Missense_Mutation_p.P227S	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	603										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GACTGTTCCACCAGCATTTAT	0.403													44	10					0	0	0.003214	0	0
GPR112	139378	broad.mit.edu	37	X	135428482	135428482	+	Missense_Mutation	SNP	G	A	A	rs143735478		TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:135428482G>A	uc004ezu.1	+	6	2908	c.2617G>A	c.(2617-2619)GAA>AAA	p.E873K	GPR112_uc010nsb.1_Missense_Mutation_p.E668K|GPR112_uc010nsc.1_Missense_Mutation_p.E640K	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	873	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGTGACAGACGAATCAGCACA	0.403													102	14					0	0	0.003610	0	0
GPR112	139378	broad.mit.edu	37	X	135430785	135430785	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:135430785C>T	uc004ezu.1	+	6	5211	c.4920C>T	c.(4918-4920)ATC>ATT	p.I1640I	GPR112_uc010nsb.1_Silent_p.I1435I|GPR112_uc010nsc.1_Silent_p.I1407I	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1640	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTTCCAGGATCACACCTACGA	0.453													66	18					0	0	0.003610	0	0
GPR112	139378	broad.mit.edu	37	X	135494424	135494424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:135494424G>A	uc004ezu.1	+	24	9227	c.8936G>A	c.(8935-8937)GGA>GAA	p.G2979E	GPR112_uc010nsb.1_Missense_Mutation_p.G2774E	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2979	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCTGGCTTAGGATTCTTCATT	0.468													22	4					0	0	0.002299	0	0
GPR101	83550	broad.mit.edu	37	X	136112601	136112601	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:136112601G>A	uc011mwh.1	-	1	1233	c.1233C>T	c.(1231-1233)TCC>TCT	p.S411S		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	411	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					AGGGCCCCAGGGATAGCACAT	0.522													8	7					0	0	0.004482	0	0
CXorf66	347487	broad.mit.edu	37	X	139038684	139038684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:139038684C>T	uc004fbb.2	-	3	479	c.457G>A	c.(457-459)GGA>AGA	p.G153R		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	153	Ser-rich.|Cytoplasmic (Potential).					integral to membrane					0						GTTAACTTTCCTGCACTGTTT	0.413													103	37					0	0	0.003610	0	0
MIR320D2	100302169	broad.mit.edu	37	X	140008356	140008356	+	RNA	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:140008356C>T	hsa-mir-320d-2|MI0008192	-			c.29C>T																				0						CCCAGCTTTTCCTGACTCCAA	0.338													16	1					0	0	0.004990	0	0
MAGEC3	139081	broad.mit.edu	37	X	140926198	140926198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:140926198C>T	uc011mwp.1	+	1	97	c.97C>T	c.(97-99)CCA>TCA	p.P33S		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	33										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGCCTTATCCCCAGTGGTGCT	0.562													39	9					0	0	0.003610	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969287	140969287	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:140969287T>C	uc011mwp.1	+	4	614	c.614T>C	c.(613-615)CTC>CCC	p.L205P		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	205	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AAAGAGCCTCTCACAAGAGCA	0.448													56	12					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996386	140996386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:140996386C>T	uc004fbt.2	+	4	3482	c.3196C>T	c.(3196-3198)CGT>TGT	p.R1066C	MAGEC1_uc010nsl.1_Missense_Mutation_p.R133C	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1066	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTCTCCTCCTCGTTACGAATT	0.493										HNSCC(15;0.026)			55	4					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996397	140996397	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:140996397C>T	uc004fbt.2	+	4	3493	c.3207C>T	c.(3205-3207)TTC>TTT	p.F1069F	MAGEC1_uc010nsl.1_Silent_p.F136F	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1069	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GTTACGAATTCCTGTGGGGTC	0.488										HNSCC(15;0.026)			53	6					0	0	0.003610	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290876	141290876	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:141290876G>A	uc004fbu.1	-	3	1246	c.898C>T	c.(898-900)CTG>TTG	p.L300L		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	300	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GGACCCCACAGGAATTCATAA	0.488										HNSCC(46;0.14)			35	9					0	0	0.004289	0	0
SLITRK4	139065	broad.mit.edu	37	X	142716504	142716504	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:142716504C>T	uc004fbx.2	-	2	2797	c.2421G>A	c.(2419-2421)AGG>AGA	p.R807R	SLITRK4_uc004fby.2_Silent_p.R807R	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	807	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ACTCACTCTTCCTTTGTTCCA	0.428													40	3					0	0	0.005524	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718198	142718198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:142718198C>T	uc004fbx.2	-	2	1103	c.727G>A	c.(727-729)GAA>AAA	p.E243K	SLITRK4_uc004fby.2_Missense_Mutation_p.E243K	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	243	Extracellular (Potential).|LRRCT 1.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTGGGAGTTTCACAGATAGCT	0.438													23	9					0	0	0.002299	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795341	142795341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:142795341C>T	uc004fbz.2	-	2	1091	c.337G>A	c.(337-339)GAA>AAA	p.E113K		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	113										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAGGTCTTCGTCCTCCTGT	0.532													25	120					0	0	0.003610	0	0
PASD1	139135	broad.mit.edu	37	X	150832763	150832763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:150832763G>A	uc004fev.3	+	11	1346	c.1014G>A	c.(1012-1014)ATG>ATA	p.M338I		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	338						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAGGCCTGATGGATCCAGTGG	0.597													17	5					0	0	0.000958	0	0
CNGA2	1260	broad.mit.edu	37	X	150911752	150911752	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:150911752C>T	uc004fey.1	+	7	1001	c.777C>T	c.(775-777)TTC>TTT	p.F259F		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	259	Extracellular (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGTTTGAGTTCTTTGACCGGA	0.522													53	7					0	0	0.003610	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303319	151303319	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:151303319C>T	uc004ffk.2	-	5	1182	c.774G>A	c.(772-774)GGG>GGA	p.G258G	MAGEA10_uc004ffl.2_Silent_p.G258G	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	258	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGCTCCATCCCATCATACA	0.527													37	10					0	0	0.001287	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303487	151303487	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:151303487G>A	uc004ffk.2	-	5	1014	c.606C>T	c.(604-606)GTC>GTT	p.V202V	MAGEA10_uc004ffl.2_Silent_p.V202V	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	202	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGGTGACAAGGACAAAGGAGT	0.498													23	6					0	0	0.003330	0	0
MIR105-2	406898	broad.mit.edu	37	X	151562957	151562957	+	RNA	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:151562957G>A	hsa-mir-105-2|MI0000112	-			c.8G>A			GABRA3_uc010ntk.1_Intron|MIR105-1_hsa-mir-105-1|MI0000111_5'Flank|uc004ffo.2_5'Flank|MIR767_hsa-mir-767|MI0003763_5'Flank|uc011myf.1_RNA																	0						ATTTGACCACGATGCACACAC	0.453													36	5					0	0	0.001485	0	0
BGN	633	broad.mit.edu	37	X	152771449	152771449	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:152771449C>T	uc004fhr.1	+	4	652	c.480C>T	c.(478-480)TCC>TCT	p.S160S	BGN_uc004fhq.1_RNA	NM_001711	NP_001702	P21810	PGS1_HUMAN	biglycan preproprotein	160	LRR 4.					proteinaceous extracellular matrix|transport vesicle	extracellular matrix structural constituent			breast(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TACCCAGCTCCCTGGTGGAGC	0.607													11	2					0	0	0.001368	0	0
OPN1LW	5956	broad.mit.edu	37	X	153421925	153421925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:153421925C>T	uc004fjz.3	+	5	934	c.901C>T	c.(901-903)CCT>TCT	p.P301S		NM_020061	NP_064445	P04000	OPSR_HUMAN	opsin 1 (cone pigments), long-wave-sensitive	301	Helical; Name=7; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CGCCTTCCACCCTTTGATGGC	0.542													86	19					0	0	0.003610	0	0
FLNA	2316	broad.mit.edu	37	X	153590643	153590643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:153590643C>T	uc004fkk.2	-	18	2872	c.2623G>A	c.(2623-2625)GTG>ATG	p.V875M	FLNA_uc010nuu.1_Missense_Mutation_p.V875M	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	875	Filamin 7.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCGGCCTTCACCTTACTGGCG	0.662													25	1					0	0	0.003330	0	0
GDI1	2664	broad.mit.edu	37	X	153667183	153667183	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrX:153667183C>T	uc004fli.3	+	3	568	c.226C>T	c.(226-228)CTG>TTG	p.L76L	GDI1_uc011mzo.1_Silent_p.L76L	NM_001493	NP_001484	P31150	GDIA_HUMAN	GDP dissociation inhibitor 1	76					protein transport|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|midbody	GTPase activator activity|protein binding				0	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GAATGTTGACCTGATTCCCAA	0.567													90	12					0	0	0.003610	0	0
TGIF2LY	90655	broad.mit.edu	37	Y	3447612	3447612	+	Silent	SNP	C	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrY:3447612C>T	uc004fqk.2	+	2	391	c.327C>T	c.(325-327)CTC>CTT	p.L109L		NM_139214	NP_631960	Q8IUE0	TF2LY_HUMAN	TGFB-induced factor homeobox 2-like, Y-linked	109	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GACGCATTCTCCCGGATATGC	0.507													43	10					0	0	0.003610	0	0
TSPY2	64591	broad.mit.edu	37	Y	6114348	6114348	+	Silent	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrY:6114348G>A	uc004fqr.1	+	1	85	c.39G>A	c.(37-39)GAG>GAA	p.E13E	TTTY23_uc004fqq.1_5'Flank|TSPY2_uc004fqs.1_Silent_p.E13E	NM_022573	NP_072095	A6NKD2	TSPY2_HUMAN	testis specific protein, Y-linked 2	13					cell differentiation|gonadal mesoderm development|nucleosome assembly|spermatogenesis	cytoplasm|nucleus					0						GGGTGCCAGAGAGGCTGCGGC	0.716													15	3					0	0	0.000743	0	0
TSPY2	64591	broad.mit.edu	37	Y	6115606	6115606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chrY:6115606G>A	uc004fqr.1	+	3	614	c.568G>A	c.(568-570)GAA>AAA	p.E190K	TSPY2_uc004fqs.1_Missense_Mutation_p.E190K	NM_022573	NP_072095	A6NKD2	TSPY2_HUMAN	testis specific protein, Y-linked 2	190					cell differentiation|gonadal mesoderm development|nucleosome assembly|spermatogenesis	cytoplasm|nucleus					0						CTGACAGGTGGAAGAAGAGAA	0.448													29	12					0	0	0.001271	0	0
OR2M3	127062	broad.mit.edu	37	1	248366915	248366916	+	Frame_Shift_Ins	INS	-	T	T	rs141760284	byFrequency	TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr1:248366915_248366916insT	uc010pzg.1	+	1	546_547	c.546_547insT	c.(544-549)CCCTCCfs	p.P182fs		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	182_183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GTGACTTCCCCTCCCTACTAAT	0.421													71	149	---	---	---	---					
DYNC2H1	79659	broad.mit.edu	37	11	103033810	103033832	+	Frame_Shift_Del	DEL	GAAGGAATGTGTTACTACTGGGC	-	-			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:103033810_103033832delGAAGGAATGTGTTACTACTGGGC	uc001pho.2	+	30	4689_4711	c.4545_4567delGAAGGAATGTGTTACTACTGGGC	c.(4543-4569)TTGAAGGAATGTGTTACTACTGGGCGAfs	p.L1515fs	DYNC2H1_uc001phn.1_Frame_Shift_Del_p.L1515fs|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	1515_1523	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AACAGTTGTTGAAGGAATGTGTTACTACTGGGCGAAGTTCTCA	0.336													8	238	---	---	---	---					
CCDC15	80071	broad.mit.edu	37	11	124856681	124856681	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr11:124856681delT	uc001qbm.3	+	7	1056	c.797delT	c.(796-798)CTTfs	p.L266fs		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	266						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		TCTTCATCTCTTGTAACTGAT	0.328													2	4	---	---	---	---					
HCFC2	29915	broad.mit.edu	37	12	104496938	104496942	+	Frame_Shift_Del	DEL	ACATC	-	-			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr12:104496938_104496942delACATC	uc001tkj.3	+	15	2369_2373	c.2266_2270delACATC	c.(2266-2271)ACATCCfs	p.T756fs	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	756_757	Fibronectin type-III 3.				regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						TATTGATTATACATCCAGGCCTGCC	0.400													27	69	---	---	---	---					
MAP1D	254042	broad.mit.edu	37	2	172926305	172926305	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr2:172926305delC	uc002uhk.2	+	2	193	c.120delC	c.(118-120)TTCfs	p.F40fs	MAP1D_uc010zdw.1_5'UTR	NM_199227	NP_954697	Q6UB28	AMP1D_HUMAN	methionine aminopeptidase 1D precursor	40					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis	mitochondrion	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GAAGAAATTTCTTTTTTCGGA	0.388													16	286	---	---	---	---					
ZNF831	128611	broad.mit.edu	37	20	57829676	57829677	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr20:57829676_57829677insT	uc002yan.2	+	5	4912_4913	c.4912_4913insT	c.(4912-4914)ATTfs	p.I1638fs		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1638						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GCCCATAGAAATTCCTGAAGCC	0.480													22	76	---	---	---	---					
RASA2	5922	broad.mit.edu	37	3	141277785	141277785	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr3:141277785delA	uc003etz.1	+	8	742	c.742delA	c.(742-744)ATTfs	p.I248fs	RASA2_uc010huq.1_Frame_Shift_Del_p.I248fs|RASA2_uc003eua.1_Frame_Shift_Del_p.I248fs|RASA2_uc011bnc.1_5'UTR	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	248	C2 2.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						AGAGGAGGACATTGAAAAGCT	0.313													49	31	---	---	---	---					
GYPB	2994	broad.mit.edu	37	4	144940417	144940417	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr4:144940417delT	uc003ijm.1	-	1	80	c.24delA	c.(22-24)GTAfs	p.V8fs	GYPA_uc003ijn.2_Intron|GYPB_uc011chs.1_RNA|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_RNA|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_RNA|GYPB_uc011chw.1_RNA|GYPB_uc011chx.1_RNA|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_RNA	NM_002100	NP_002091	P06028	GLPB_HUMAN	glycophorin B precursor	8						integral to plasma membrane					0	all_hematologic(180;0.158)					ACAATAGTAATACAAAGATTA	0.343													8	19	---	---	---	---					
TAS2R1	50834	broad.mit.edu	37	5	9629698	9629698	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A29E-06A-11D-A197-08	TCGA-EE-A29E-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	3d76a236-62ac-4e16-8575-cac08a9d40de	8abc37be-e9b6-4481-9c98-560d410b2835	g.chr5:9629698delC	uc003jem.1	-	1	766	c.447delG	c.(445-447)GGGfs	p.G149fs		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	149	Extracellular (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						GGACCATAAACCCTGCATATT	0.393													24	43	---	---	---	---					
