Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLCH2	9651	broad.mit.edu	37	1	2418770	2418770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:2418770G>A	uc001aji.1	+	7	1343	c.1069G>A	c.(1069-1071)GAC>AAC	p.D357N	PLCH2_uc010nyz.1_Missense_Mutation_p.D145N|PLCH2_uc009vle.1_Missense_Mutation_p.D145N|PLCH2_uc001ajj.1_Missense_Mutation_p.D145N|PLCH2_uc001ajk.1_Missense_Mutation_p.D145N	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	357	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		GTCACGGGTGGACATGTATGC	0.627000													5	22					0	0	0.000274275	0	0
RERE	473	broad.mit.edu	37	1	8422900	8422900	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:8422900G>C	uc001ape.2	-	17	2555	c.1745C>G	c.(1744-1746)TCG>TGG	p.S582W	RERE_uc001apf.2_Missense_Mutation_p.S582W|RERE_uc010nzx.1_Missense_Mutation_p.S314W|RERE_uc001apd.2_Missense_Mutation_p.S28W	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	582					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GCGTAGTGTCGACATCTGCCC	0.617000													17	62					0	0	0.000566183	0	0
MTOR	2475	broad.mit.edu	37	1	11316216	11316216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:11316216G>A	uc001asd.2	-	5	659	c.538C>T	c.(538-540)CCT>TCT	p.P180S		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	180					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						AAGAAGGTAGGGACGCTGATG	0.527000													6	35					0	0	0.00116845	0	0
TNFRSF8	943	broad.mit.edu	37	1	12144568	12144568	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:12144568T>G	uc001atq.2	+	2	333	c.111T>G	c.(109-111)TAT>TAG	p.Y37*	TNFRSF8_uc010obc.1_Intron	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	37	TNFR-Cys 1.|Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		GCCACTACTATGACAAGGCTG	0.572000													20	84					0	0	0.00229938	0	0
IGSF21	84966	broad.mit.edu	37	1	18702887	18702887	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:18702887C>T	uc001bau.1	+	7	1482	c.1099C>T	c.(1099-1101)CAG>TAG	p.Q367*	IGSF21_uc001bav.1_Nonsense_Mutation_p.Q188*	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	367	Ig-like 2.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CCATGGGTTTCAGGTCAGCCT	0.577000													11	90					0	0	0.00136819	0	0
UBR4	23352	broad.mit.edu	37	1	19518857	19518857	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:19518857G>A	uc001bbi.2	-	11	1223	c.1219C>T	c.(1219-1221)CAA>TAA	p.Q407*		NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	407					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CCCAGCAATTGGAAATTCTGA	0.428000													22	96					0	0	0.00278032	0	0
LDLRAD2	401944	broad.mit.edu	37	1	22142479	22142479	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:22142479C>T	uc001bfg.1	+	3	742	c.555C>T	c.(553-555)ATC>ATT	p.I185I		NM_001013693	NP_001013715	Q5SZI1	LRAD2_HUMAN	low density lipoprotein receptor class A domain	185	Extracellular (Potential).|LDL-receptor class A.					integral to membrane	receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.00166)|all_lung(284;0.00172)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;5.2e-26)|COAD - Colon adenocarcinoma(152;1.13e-05)|GBM - Glioblastoma multiforme(114;1.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00598)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)		GCAGGTGCATCCCCTCAAGCC	0.627000													7	81					0	0	0.000157383	0	0
ZNF683	257101	broad.mit.edu	37	1	26694131	26694131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:26694131G>A	uc001bmg.1	-	3	390	c.272C>T	c.(271-273)CCC>CTC	p.P91L	ZNF683_uc001bmh.1_Missense_Mutation_p.P91L|ZNF683_uc009vsj.1_Missense_Mutation_p.P91L	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	91					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		TGTGCCCAGGGGTGCCGGCTG	0.692000													6	36					0	0	0.00198382	0	0
AHDC1	27245	broad.mit.edu	37	1	27876232	27876232	+	Silent	SNP	G	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:27876232G>T	uc009vsy.2	-	6	3364	c.2395C>A	c.(2395-2397)CGG>AGG	p.R799R	AHDC1_uc009vsz.1_Silent_p.R799R	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	799	Gly-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GCAAAGGCCCGGGCCTCGGTC	0.682000													19	82					2.94398e-08	1.16997e-07	0.000958276	1	0
C1orf38	9473	broad.mit.edu	37	1	28209071	28209071	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:28209071G>A	uc001bpc.3	+	4	1264	c.1236G>A	c.(1234-1236)GAG>GAA	p.E412E	C1orf38_uc001boz.2_Intron|C1orf38_uc001bpa.2_Intron|C1orf38_uc010ofn.1_Silent_p.E216E|C1orf38_uc010ofo.1_Silent_p.E283E	NM_001105556	NP_001099026	Q5TEJ8	THMS2_HUMAN	basement membrane-induced gene isoform 3	412	CABIT 2.				cell adhesion|inflammatory response					ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;0.000129)|Lung NSC(340;0.000259)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;2.52e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)		AGTGCAAAGAGGAGGCAGAGA	0.627000													4	42					0	0	0.00024832	0	0
SFRS4	6429	broad.mit.edu	37	1	29475057	29475057	+	Silent	SNP	C	A	A	rs148084661	byFrequency	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:29475057C>A	uc001bro.2	-	6	1723	c.1350G>T	c.(1348-1350)TCG>TCT	p.S450S	SFRS4_uc010ofy.1_3'UTR	NM_005626	NP_005617	Q08170	SRSF4_HUMAN	splicing factor, arginine/serine-rich 4	450	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|RNA binding				0		Colorectal(325;0.00161)|Breast(348;0.0364)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0529)|Lung NSC(340;0.0654)|all_lung(284;0.074)|Ovarian(437;0.104)|Medulloblastoma(700;0.151)		Colorectal(126;1.01e-07)|COAD - Colon adenocarcinoma(152;6.21e-06)|STAD - Stomach adenocarcinoma(196;0.0196)|BRCA - Breast invasive adenocarcinoma(304;0.0531)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.138)		GGTTTGGTTTCGATTTGGAAT	0.517000													24	142					2.89027e-11	1.15289e-10	0.00229938	1	0
CSMD2	114784	broad.mit.edu	37	1	34033312	34033312	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:34033312T>C	uc001bxn.1	-	54	8221	c.8192A>G	c.(8191-8193)AAC>AGC	p.N2731S	CSMD2_uc001bxm.1_Missense_Mutation_p.N2754S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2731	Sushi 18.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTAGCTGTAGTTCTCCCCATT	0.557000													6	30					0	0	0.00198382	0	0
CC2D1B	200014	broad.mit.edu	37	1	52821912	52821912	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:52821912T>C	uc001ctq.1	-	18	2156	c.2018A>G	c.(2017-2019)CAG>CGG	p.Q673R	CC2D1B_uc001ctr.2_Missense_Mutation_p.Q213R|CC2D1B_uc001cts.2_Missense_Mutation_p.Q358R	NM_032449	NP_115825	Q5T0F9	C2D1B_HUMAN	coiled-coil and C2 domain containing 1B	673										ovary(2)	2						GTCGAGGCCCTGAGCCTGGGC	0.572000													22	102					0	0	0.00047179	0	0
DAB1	1600	broad.mit.edu	37	1	57535063	57535063	+	Silent	SNP	A	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:57535063A>T	uc001cys.1	-	10	1307	c.633T>A	c.(631-633)CGT>CGA	p.R211R	DAB1_uc001cyt.1_Silent_p.R211R|DAB1_uc001cyq.1_Intron|DAB1_uc001cyr.1_Intron|DAB1_uc009vzw.1_Intron|DAB1_uc009vzx.1_Silent_p.R211R	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	211					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TTTCGGGATCACGGATTGGCT	0.403000													25	107					0	0	0.00106085	0	0
KANK4	163782	broad.mit.edu	37	1	62740733	62740733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:62740733C>T	uc001dah.3	-	3	420	c.43G>A	c.(43-45)GAA>AAA	p.E15K	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	15										ovary(3)|skin(2)|lung(1)	6						TCTTTCTCTTCATCCCCCTGA	0.438000													24	129					0	0	0.00127121	0	0
LEPR	3953	broad.mit.edu	37	1	66101934	66101934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:66101934C>T	uc001dci.2	+	20	2936	c.2734C>T	c.(2734-2736)CTT>TTT	p.L912F	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	912	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGGTCCTCTTCTTTTGGAGCC	0.358000													42	221					0	0	0.000781405	0	0
PDE4B	5142	broad.mit.edu	37	1	66827409	66827409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:66827409C>T	uc001dcn.2	+	10	1144	c.953C>T	c.(952-954)TCA>TTA	p.S318L	PDE4B_uc009war.2_Missense_Mutation_p.S226L|PDE4B_uc001dco.2_Missense_Mutation_p.S318L|PDE4B_uc001dcp.2_Missense_Mutation_p.S303L|PDE4B_uc001dcq.2_Missense_Mutation_p.S146L|PDE4B_uc009was.2_Missense_Mutation_p.S85L	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	318					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	ATGCATAGTTCAAGCCTAAAC	0.433000													18	77					0	0	0.00074312	0	0
USP33	23032	broad.mit.edu	37	1	78191366	78191366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:78191366G>A	uc001dht.2	-	12	1657	c.1310C>T	c.(1309-1311)TCG>TTG	p.S437L	USP33_uc001dhs.2_Missense_Mutation_p.S158L|USP33_uc001dhu.2_Missense_Mutation_p.S406L|USP33_uc001dhv.2_Missense_Mutation_p.S242L|USP33_uc001dhw.2_Missense_Mutation_p.S437L	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	437					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						AGGGCTTGCCGATAAACGTGG	0.403000													10	67					0	0	0.000978159	0	0
HSP90B3P	343477	broad.mit.edu	37	1	92109213	92109213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:92109213G>A	uc010osx.1	+	3	1240	c.1240G>A	c.(1240-1242)GAG>AAG	p.E414K		NR_003130				SubName: Full=cDNA FLJ58812, highly similar to Endoplasmin (Heat shock protein 90kDa beta member 1);												0						TGGCAACACGGAGAGAATCAT	0.473000													6	21					0	0	0.00116845	0	0
F3	2152	broad.mit.edu	37	1	95001606	95001606	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:95001606G>A	uc001dqr.2	-	3	506	c.327C>T	c.(325-327)TCC>TCT	p.S109S	F3_uc001dqp.2_RNA|F3_uc001dqq.2_RNA|F3_uc001dqs.2_Silent_p.S109S	NM_001993	NP_001984	P13726	TF_HUMAN	coagulation factor III precursor	109	Extracellular (Potential).				activation of caspase activity|activation of plasma proteins involved in acute inflammatory response|anti-apoptosis|blood coagulation, extrinsic pathway|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of protein kinase B signaling cascade	extracellular matrix|extracellular space|integral to membrane	cell surface binding|phospholipid binding|protease binding			central_nervous_system(1)	1		all_lung(203;0.00106)|Lung NSC(277;0.00475)		all cancers(265;0.0232)|Epithelial(280;0.121)	Coagulation factor VIIa(DB00036)	CTGCAGGGTAGGAGAAGACCC	0.522000													36	175					0	0	0.00058488	0	0
SLC44A3	126969	broad.mit.edu	37	1	95303320	95303320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:95303320C>T	uc001dqv.3	+	6	670	c.563C>T	c.(562-564)TCC>TTC	p.S188F	SLC44A3_uc001dqx.3_Missense_Mutation_p.S188F|SLC44A3_uc010otq.1_Missense_Mutation_p.S120F|SLC44A3_uc010otr.1_Missense_Mutation_p.S152F|SLC44A3_uc001dqw.3_Missense_Mutation_p.S140F|SLC44A3_uc010ots.1_Missense_Mutation_p.S108F|SLC44A3_uc009wds.2_Missense_Mutation_p.S91F|SLC44A3_uc010ott.1_Missense_Mutation_p.S108F|SLC44A3_uc010otu.1_RNA	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	188						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	GAGTGCTACTCCCTATTTGCA	0.378000													27	107					0	0	0.00106085	0	0
RWDD3	25950	broad.mit.edu	37	1	95699828	95699828	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:95699828G>A	uc009wdu.2	+	1	118	c.42G>A	c.(40-42)GCG>GCA	p.A14A	RWDD3_uc001drd.3_Intron|uc001dre.1_5'Flank|RWDD3_uc010oty.1_5'UTR|RWDD3_uc009wdt.2_Silent_p.A14A|RWDD3_uc001drf.3_Silent_p.A14A|RWDD3_uc001drh.3_5'UTR|RWDD3_uc009wdv.2_RNA|RWDD3_uc001drg.3_RNA|RWDD3_uc001dri.3_Silent_p.A14A	NM_015485	NP_056300	Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3 isoform a	14	RWD.					cytoplasm|nucleus	protein binding			ovary(1)	1		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		TCCTGGCCGCGATTTTCTGCA	0.726000													5	8					0	0	0.00116845	0	0
DPYD	1806	broad.mit.edu	37	1	98039396	98039396	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:98039396T>A	uc001drv.2	-	11	1396	c.1259A>T	c.(1258-1260)AAT>ATT	p.N420I		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	420					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTCATCTTCATTCCATTTTCC	0.453000													16	120					0	0	0.000566183	0	0
GSTM2	2946	broad.mit.edu	37	1	110217428	110217428	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:110217428C>T	uc001dyi.2	+	8	941	c.627C>T	c.(625-627)TTC>TTT	p.F209F	GSTM2_uc001dyj.2_Silent_p.F209F|GSTM2_uc010ovt.1_Intron|GSTM2_uc009wfk.2_Intron	NM_000848	NP_000839	P28161	GSTM2_HUMAN	glutathione S-transferase mu 2 isoform 1	209					glutathione metabolic process|xenobiotic catabolic process	cytoplasm	glutathione transferase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		all cancers(265;0.0122)|Colorectal(144;0.0129)|Epithelial(280;0.0146)|Lung(183;0.0422)|COAD - Colon adenocarcinoma(174;0.047)|LUSC - Lung squamous cell carcinoma(189;0.227)	Glutathione(DB00143)	GACCTGTGTTCACAAAGATGG	0.582000													41	150					0	0	0.0025221	0	0
KCNA10	3744	broad.mit.edu	37	1	111061064	111061064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:111061064C>T	uc001dzt.1	-	1	734	c.346G>A	c.(346-348)GAA>AAA	p.E116K		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	116						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		ATCCTTTTTTCCCGGTCTCCC	0.468000													28	72					0	0	0.00178596	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112999051	112999051	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:112999051C>T	uc001ebx.2	+	6	1165	c.937C>T	c.(937-939)CAA>TAA	p.Q313*	CTTNBP2NL_uc001ebz.2_5'Flank	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	313						actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTGTTTTGCCAAACAGAGAG	0.493000													18	145					0	0	0.000566183	0	0
MOV10	4343	broad.mit.edu	37	1	113232048	113232048	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:113232048T>C	uc001eck.2	+	4	623	c.353T>C	c.(352-354)CTT>CCT	p.L118P	MOV10_uc001ecl.2_Missense_Mutation_p.L118P|MOV10_uc001ecn.2_Missense_Mutation_p.L118P|MOV10_uc001ecm.2_Missense_Mutation_p.L58P|MOV10_uc009wgj.1_Missense_Mutation_p.L58P	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	118					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		GCTGAGTATCTTCATGGGAAA	0.597000													10	64					0	0	0.00244969	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			35	164					1.04594e-18	4.19547e-18	0.00128727	1	0
SLC22A15	55356	broad.mit.edu	37	1	116574189	116574189	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:116574189C>T	uc001egb.3	+	6	1061	c.931C>T	c.(931-933)CTG>TTG	p.L311L	SLC22A15_uc001ega.2_3'UTR	NM_018420	NP_060890	Q8IZD6	S22AF_HUMAN	solute carrier family 22, member 15	311	Helical; (Potential).				ion transport	integral to membrane	transmembrane transporter activity			large_intestine(2)	2	Lung SC(450;0.184)	all_cancers(81;3.17e-06)|all_epithelial(167;2.32e-06)|all_lung(203;9.81e-06)|Lung NSC(69;5.94e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CACTTTGATCCTGATGTTCAT	0.478000													7	116					0	0	0.00198382	0	0
ARNT	405	broad.mit.edu	37	1	150811929	150811929	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:150811929G>A	uc001evr.1	-	6	617	c.474C>T	c.(472-474)TTC>TTT	p.F158F	ARNT_uc001evs.1_Silent_p.F143F|ARNT_uc009wmb.1_Silent_p.F149F|ARNT_uc009wmc.1_Silent_p.F158F|ARNT_uc009wmd.1_Silent_p.F143F|ARNT_uc009wme.1_Silent_p.F158F|ARNT_uc010pcl.1_Silent_p.F142F	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	158					positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity			skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			GATCAGTGAGGAAAGACGGCT	0.453000			T	ETV6	AML								14	150					0	0	0.000308642	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058027	152058027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:152058027C>T	uc001ezo.1	-	3	2196	c.2131G>A	c.(2131-2133)GGA>AGA	p.G711R		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	711							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GTTGCTCTTCCTTTCTCTTCT	0.443000													26	147					0	0	0.000586117	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059398	152059398	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:152059398G>A	uc001ezo.1	-	3	825	c.760C>T	c.(760-762)CAG>TAG	p.Q254*		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	254							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TTTCCTTCCTGTTCTCCAAAC	0.443000													14	188					0	0	0.00074312	0	0
IVL	3713	broad.mit.edu	37	1	152882714	152882714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:152882714G>A	uc001fau.2	+	2	487	c.441G>A	c.(439-441)ATG>ATA	p.M147I		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	147					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACTGGGAATGAAGAAAGAGC	0.299000													7	51					0	0	0.000274275	0	0
SPRR3	6707	broad.mit.edu	37	1	152975541	152975541	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:152975541G>A	uc001fax.3	+	3	195	c.45G>A	c.(43-45)CAG>CAA	p.Q15Q	SPRR3_uc001faz.3_Silent_p.Q15Q|SPRR3_uc001fay.2_Silent_p.Q15Q	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	15					keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACCACCTCAGCTTCAACAGC	0.488000													10	69					0	0	0.000978159	0	0
SHE	126669	broad.mit.edu	37	1	154471638	154471638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:154471638C>T	uc001ffb.2	-	2	755	c.668G>A	c.(667-669)GGA>GAA	p.G223E	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	223										breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GTCGTTCTCTCCGACTCTCTC	0.438000													16	84					0	0	0.00074312	0	0
INSRR	3645	broad.mit.edu	37	1	156823762	156823762	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:156823762C>G	uc010pht.1	-	2	673	c.419G>C	c.(418-420)CGT>CCT	p.R140P	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.R140P	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	140					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CTTCTCCACACGCACAGCCCC	0.627000													3	22					0	0	0.00024832	0	0
CD1D	912	broad.mit.edu	37	1	158151902	158151902	+	Nonsense_Mutation	SNP	C	T	T	rs149673076	by1000genomes	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:158151902C>T	uc001frr.2	+	4	908	c.409C>T	c.(409-411)CAA>TAA	p.Q137*	CD1D_uc009wsr.1_Nonsense_Mutation_p.Q137*|CD1D_uc009wss.2_Nonsense_Mutation_p.Q137*|CD1D_uc009wst.1_Nonsense_Mutation_p.Q33*	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	137	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					TGTAGCATTTCAAGGAAAAGA	0.507000													28	204					0	0	0.000720815	0	0
OR10R2	343406	broad.mit.edu	37	1	158450492	158450492	+	Silent	SNP	T	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:158450492T>G	uc010pik.1	+	1	825	c.825T>G	c.(823-825)GCT>GCG	p.A275A	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	275	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					ATGGCTGTGCTTCCTTCATCT	0.493000													6	77					0	0	0.00116845	0	0
FCGR3A	2214	broad.mit.edu	37	1	161518385	161518385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:161518385C>T	uc001gat.3	-	4	282	c.145G>A	c.(145-147)GGA>AGA	p.G49R	FCGR3A_uc001gar.2_Missense_Mutation_p.G85R|FCGR3A_uc001gas.2_Missense_Mutation_p.G84R|FCGR3A_uc009wuh.2_Missense_Mutation_p.G48R|FCGR3A_uc009wui.2_Missense_Mutation_p.G49R	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	49	Ig-like C2-type 1.|Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GAGTAGGCTCCCTGGCACTTC	0.537000													27	237					0	0	0.00127121	0	0
DUSP27	92235	broad.mit.edu	37	1	167096187	167096187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:167096187G>A	uc001geb.1	+	5	1819	c.1819G>A	c.(1819-1821)GAG>AAG	p.E607K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	607					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GAACAAGGAGGAGGTGGTGGA	0.612000													4	34					0	0	0.000602214	0	0
RALGPS2	55103	broad.mit.edu	37	1	178802587	178802587	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:178802587T>C	uc001glz.2	+	8	847	c.509T>C	c.(508-510)TTT>TCT	p.F170S	RALGPS2_uc001gly.1_Missense_Mutation_p.F170S|RALGPS2_uc010pnb.1_Missense_Mutation_p.F170S	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	170	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						AAAACTACCTTTGAAAAATTA	0.289000													20	66					0	0	0.00121646	0	0
CACNA1E	777	broad.mit.edu	37	1	181726163	181726163	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:181726163C>T	uc001gow.2	+	30	4395	c.4230C>T	c.(4228-4230)TTC>TTT	p.F1410F	CACNA1E_uc009wxs.2_Silent_p.F1298F|CACNA1E_uc001gox.1_Silent_p.F636F|CACNA1E_uc009wxt.2_Silent_p.F636F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1410	III.|Helical; Name=S6 of repeat III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TTGTGGTCTTCCCCTTCTTCT	0.488000													23	86					0	0	0.00188189	0	0
C1orf14	81626	broad.mit.edu	37	1	182873317	182873317	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:182873317G>A	uc001gpu.2	-	8	1870	c.1585C>T	c.(1585-1587)CAG>TAG	p.Q529*	C1orf14_uc001gpv.2_Nonsense_Mutation_p.Q410*|C1orf14_uc010pnz.1_Nonsense_Mutation_p.Q387*|C1orf14_uc001gpw.2_Nonsense_Mutation_p.Q249*	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	601	PbH1 2.										0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		TGAAATACCTGGGCGCCAGTT	0.358000													13	61					0	0	0.00244969	0	0
LAMC2	3918	broad.mit.edu	37	1	183195866	183195866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:183195866C>T	uc001gqa.2	+	9	1414	c.1100C>T	c.(1099-1101)TCA>TTA	p.S367L	LAMC2_uc001gpz.3_Missense_Mutation_p.S367L|LAMC2_uc010poa.1_Missense_Mutation_p.S67L	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	367	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						ACCCTGATTTCAGCCCGCCCT	0.502000													40	164					0	0	0.00285205	0	0
C1orf26	54823	broad.mit.edu	37	1	185143999	185143999	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:185143999C>T	uc001grg.3	+	5	834	c.720C>T	c.(718-720)TCC>TCT	p.S240S	C1orf26_uc001grh.3_Silent_p.S240S	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	240											0						CTATAAAATCCCGTGACACCC	0.368000													26	145					0	0	0.00106085	0	0
CFHR5	81494	broad.mit.edu	37	1	196952077	196952077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:196952077C>T	uc001gts.3	+	2	249	c.121C>T	c.(121-123)CCT>TCT	p.P41S		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	41	Sushi 1.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AGATTATAACCCTTTTTCCCA	0.338000													10	83					0	0	0.000442599	0	0
DENND1B	163486	broad.mit.edu	37	1	197479747	197479747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:197479747G>A	uc010ppe.1	-	22	2449	c.2111C>T	c.(2110-2112)TCG>TTG	p.S704L	DENND1B_uc010ppf.1_RNA	NM_001142795	NP_001136267	Q6P3S1	DEN1B_HUMAN	DENN/MADD domain containing 1B isoform 1	Error:Variant_position_missing_in_Q6P3S1_after_alignment						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity				0						AACAAAAGTCGATGAATGCCG	0.423000													22	96					0	0	0.00047179	0	0
KIF21B	23046	broad.mit.edu	37	1	200978520	200978520	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:200978520C>T	uc001gvs.1	-	2	455	c.138G>A	c.(136-138)AAG>AAA	p.K46K	KIF21B_uc001gvr.1_Silent_p.K46K|KIF21B_uc009wzl.1_Silent_p.K46K|KIF21B_uc010ppn.1_Silent_p.K46K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	46	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						AGGTGAAGGCCTTGTCCTTCC	0.567000													10	56					0	0	0.000442599	0	0
CACNA1S	779	broad.mit.edu	37	1	201046104	201046104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:201046104C>T	uc001gvv.2	-	12	1998	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	591	II.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CGCCGTACTTCTGTGTCTTCA	0.378000													18	102					0	0	0.00152264	0	0
HHAT	55733	broad.mit.edu	37	1	210796966	210796966	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:210796966G>C	uc009xcx.2	+	11	1508	c.1342G>C	c.(1342-1344)GGG>CGG	p.G448R	HHAT_uc010psq.1_Missense_Mutation_p.G311R|HHAT_uc001hhz.3_Missense_Mutation_p.G448R|HHAT_uc010psr.1_Missense_Mutation_p.G449R|HHAT_uc010pss.1_Missense_Mutation_p.G403R|HHAT_uc009xcy.2_Missense_Mutation_p.G383R|HHAT_uc010pst.1_Missense_Mutation_p.G385R|HHAT_uc010psu.1_Missense_Mutation_p.G383R|HHAT_uc001hia.3_Missense_Mutation_p.G138R	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	448	GTP-binding (Probable).|Helical; (Potential).		G -> E (in a melanoma cell line; abolishes GTP-binding).		multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		GGTATTTCTTGGGGGCAATGA	0.488000													16	260					0	0	0.000422831	0	0
KCNH1	3756	broad.mit.edu	37	1	211192452	211192452	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:211192452G>A	uc001hib.2	-	6	875	c.705C>T	c.(703-705)GTC>GTT	p.V235V	KCNH1_uc001hic.2_Silent_p.V235V	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	235	Helical; Name=Segment S1; (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CATTATAAGGGACCAAGATGG	0.423000													12	76					0	0	0.00136819	0	0
TARBP1	6894	broad.mit.edu	37	1	234586267	234586267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:234586267G>A	uc001hwd.2	-	10	1768	c.1768C>T	c.(1768-1770)CCT>TCT	p.P590S		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	590					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			CTACACGTAGGGGATGGCTTA	0.358000													23	86					0	0	0.000586117	0	0
RYR2	6262	broad.mit.edu	37	1	237660020	237660020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:237660020C>T	uc001hyl.1	+	20	2291	c.2171C>T	c.(2170-2172)TCC>TTC	p.S724F		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	724	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GATCTCTTCTCCTATGGATTT	0.493000													26	170					0	0	0.000878237	0	0
RYR2	6262	broad.mit.edu	37	1	237796904	237796904	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:237796904C>T	uc001hyl.1	+	43	6702	c.6582C>T	c.(6580-6582)GCC>GCT	p.A2194A		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2194	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGATGGTGGCCAACTGTTGCC	0.393000													38	257					0	0	0.000781405	0	0
CEP170	9859	broad.mit.edu	37	1	243364124	243364124	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:243364124G>A	uc001hzs.2	-	5	696	c.288C>T	c.(286-288)TTC>TTT	p.F96F	CEP170_uc001hzt.2_Silent_p.F96F|CEP170_uc001hzu.2_Silent_p.F96F	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	96						centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			GTACTACAGTGAAAAGATTTG	0.323000													10	42					0	0	0.000308642	0	0
OR2G3	81469	broad.mit.edu	37	1	247769216	247769216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:247769216C>T	uc010pyz.1	+	1	329	c.329C>T	c.(328-330)ACT>ATT	p.T110I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CTGGGCTCCACTGAATGTATC	0.493000													55	241					0	0	0.000781405	0	0
OR2T2	401992	broad.mit.edu	37	1	248616305	248616305	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:248616305C>T	uc001iek.1	+	1	207	c.207C>T	c.(205-207)ATC>ATT	p.I69I		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGCTCTCCATCATGGATACCA	0.512000													12	194					0	0	0.000720815	0	0
OR2T10	127069	broad.mit.edu	37	1	248756553	248756553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr1:248756553C>T	uc010pzn.1	-	1	517	c.517G>A	c.(517-519)GAG>AAG	p.E173K		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGCTGAATCTCATGGGATCTG	0.502000													21	80					0	0	0.00229938	0	0
ITGA8	8516	broad.mit.edu	37	10	15714643	15714643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:15714643G>A	uc001ioc.1	-	7	782	c.782C>T	c.(781-783)TCC>TTC	p.S261F	ITGA8_uc010qcb.1_Missense_Mutation_p.S261F	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	261	Extracellular (Potential).|FG-GAP 4.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GTCATCATAGGAAGCTGGAGC	0.423000													33	117					0	0	0.00283554	0	0
KIAA1217	56243	broad.mit.edu	37	10	24831694	24831694	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:24831694C>T	uc001iru.3	+	18	4010	c.3607C>T	c.(3607-3609)CAA>TAA	p.Q1203*	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Nonsense_Mutation_p.Q1167*|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Nonsense_Mutation_p.Q886*|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Nonsense_Mutation_p.Q886*|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Nonsense_Mutation_p.Q39*	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1203					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AATGGAATTCCAAAAGGTGAG	0.423000													12	53					0	0	0.00136819	0	0
PCDH15	65217	broad.mit.edu	37	10	55582494	55582494	+	Silent	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:55582494A>G	uc001jju.1	-	33	5387	c.4992T>C	c.(4990-4992)TTT>TTC	p.F1664F	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.F1661F|PCDH15_uc010qhw.1_Silent_p.F1624F|PCDH15_uc010qhx.1_Silent_p.F1595F|PCDH15_uc010qhy.1_Silent_p.F1671F|PCDH15_uc010qhz.1_Silent_p.F1666F|PCDH15_uc010qia.1_Silent_p.F1644F|PCDH15_uc010qib.1_Silent_p.F1641F	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1664	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GAGGCCTGGGAAAGCAAAATG	0.413000										HNSCC(58;0.16)			17	54					0	0	0.000566183	0	0
PCDH15	65217	broad.mit.edu	37	10	55600246	55600246	+	Missense_Mutation	SNP	G	A	A	rs111033363	byFrequency	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:55600246G>A	uc001jju.1	-	29	4212	c.3817C>T	c.(3817-3819)CGC>TGC	p.R1273C	PCDH15_uc010qhq.1_Missense_Mutation_p.R1278C|PCDH15_uc010qhr.1_Missense_Mutation_p.R1273C|PCDH15_uc010qhs.1_Missense_Mutation_p.R1285C|PCDH15_uc010qht.1_Missense_Mutation_p.R1280C|PCDH15_uc010qhu.1_Missense_Mutation_p.R1273C|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.R1273C|PCDH15_uc010qhw.1_Missense_Mutation_p.R1236C|PCDH15_uc010qhx.1_Missense_Mutation_p.R1202C|PCDH15_uc010qhy.1_Missense_Mutation_p.R1278C|PCDH15_uc010qhz.1_Missense_Mutation_p.R1273C|PCDH15_uc010qia.1_Missense_Mutation_p.R1251C|PCDH15_uc010qib.1_Missense_Mutation_p.R1251C	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1273	Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGAACATAGCGATCCAAGATC	0.408000										HNSCC(58;0.16)			6	46					0	0	0.00116845	0	0
ANK3	288	broad.mit.edu	37	10	61894132	61894132	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:61894132C>T	uc001jky.2	-	25	2931	c.2739_splice	c.e25-1	p.S913_splice	ANK3_uc001jkw.2_Splice_Site_p.S47_splice|ANK3_uc009xpa.2_Splice_Site_p.S47_splice|ANK3_uc001jkx.2_Splice_Site_p.S91_splice|ANK3_uc010qih.1_Splice_Site_p.S914_splice|ANK3_uc001jkz.3_Splice_Site_p.S907_splice|ANK3_uc001jla.1_5'Flank|ANK3_uc001jlb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1						establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGAGCGGAGGCTGTTGTATTT	0.408000													13	19					0	0	0.00136819	0	0
KIAA1279	26128	broad.mit.edu	37	10	70775712	70775712	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:70775712T>C	uc001joy.2	+	7	1502	c.1406T>C	c.(1405-1407)GTC>GCC	p.V469A		NM_015634	NP_056449	Q96EK5	KBP_HUMAN	KIF1 binding protein	469					cell differentiation|mitochondrial transport|nervous system development	mitochondrion	kinesin binding			ovary(1)	1						TATCTGTTGGTCAACAGACAG	0.428000													3	33					0	0	6.4e-05	0	0
NRG3	10718	broad.mit.edu	37	10	84738844	84738844	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:84738844G>A	uc001kco.2	+	8	1578	c.1551G>A	c.(1549-1551)AGG>AGA	p.R517R	NRG3_uc010qlz.1_Silent_p.R516R|NRG3_uc001kcp.2_Silent_p.R296R|NRG3_uc001kcq.2_Silent_p.R167R|NRG3_uc001kcr.2_Silent_p.R167R	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	517	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		AAGAATCAAGGATCCCAGACC	0.478000													10	44					0	0	0.000673444	0	0
NRG3	10718	broad.mit.edu	37	10	84744859	84744859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:84744859C>T	uc001kco.2	+	9	1616	c.1589C>T	c.(1588-1590)TCA>TTA	p.S530L	NRG3_uc010qlz.1_Missense_Mutation_p.S529L|NRG3_uc001kcp.2_Missense_Mutation_p.S333L|NRG3_uc001kcq.2_Missense_Mutation_p.S180L|NRG3_uc001kcr.2_Missense_Mutation_p.S204L	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	554	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		TTCAGGTATTCATCCAGTGGT	0.294000													21	205					0	0	0.00188189	0	0
TNKS2	80351	broad.mit.edu	37	10	93579031	93579031	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:93579031A>T	uc001khp.2	+	4	822	c.525A>T	c.(523-525)GAA>GAT	p.E175D		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	175					positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				TCACAGGTGAATATAAGAAAG	0.239000													11	23					0	0	0.000978159	0	0
PLCE1	51196	broad.mit.edu	37	10	96018860	96018860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:96018860C>T	uc001kjk.2	+	13	4401	c.3767C>T	c.(3766-3768)ACC>ATC	p.T1256I	PLCE1_uc010qnx.1_Missense_Mutation_p.T1240I|PLCE1_uc001kjm.2_Missense_Mutation_p.T948I	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1256					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CCACTCTACACCAACCTGACA	0.473000													22	114					0	0	0.000586117	0	0
PKD2L1	9033	broad.mit.edu	37	10	102056771	102056771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:102056771C>T	uc001kqx.1	-	6	1534	c.1151G>A	c.(1150-1152)AGC>AAC	p.S384N	PKD2L1_uc009xwm.1_Missense_Mutation_p.S337N	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	384	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		GTTCCAGATGCTGCTGAGGTA	0.517000													9	44					0	0	0.000673444	0	0
GBF1	8729	broad.mit.edu	37	10	104135128	104135128	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:104135128C>T	uc001kux.1	+	30	3910	c.3670C>T	c.(3670-3672)CTG>TTG	p.L1224L	GBF1_uc001kuy.1_Silent_p.L1224L|GBF1_uc001kuz.1_Silent_p.L1225L	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1224					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		GCTGCTCTCCCTGCGCATTTT	0.577000													17	71					0	0	0.00121646	0	0
DMBT1	1755	broad.mit.edu	37	10	124336089	124336089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:124336089G>A	uc001lgk.1	+	7	564	c.458G>A	c.(457-459)GGA>GAA	p.G153E	DMBT1_uc001lgl.1_Missense_Mutation_p.G153E|DMBT1_uc001lgm.1_Missense_Mutation_p.G153E|DMBT1_uc009xzz.1_Missense_Mutation_p.G153E|DMBT1_uc010qtx.1_Missense_Mutation_p.G153E|DMBT1_uc009yaa.1_Missense_Mutation_p.G5E	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	153	SRCR 1.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCAGCTCCAGGAAATGCCTGG	0.612000													37	123					0	0	0.000814825	0	0
DMBT1	1755	broad.mit.edu	37	10	124399818	124399818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:124399818C>T	uc001lgk.1	+	52	6924	c.6818C>T	c.(6817-6819)CCT>CTT	p.P2273L	DMBT1_uc001lgl.1_Missense_Mutation_p.P2263L|DMBT1_uc001lgm.1_Missense_Mutation_p.P1645L|DMBT1_uc009xzz.1_Missense_Mutation_p.P2272L|DMBT1_uc010qtx.1_Missense_Mutation_p.P993L|DMBT1_uc009yab.1_Missense_Mutation_p.P976L|DMBT1_uc009yac.1_Missense_Mutation_p.P567L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2273	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ACCAGCCGCCCTTACTACGTG	0.473000													22	92					0	0	0.00229938	0	0
FAM24B	196792	broad.mit.edu	37	10	124610020	124610020	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr10:124610020G>A	uc001lgt.2	-	3	346	c.12C>T	c.(10-12)ATC>ATT	p.I4I	CUZD1_uc001lgs.2_5'UTR|CUZD1_uc010qtz.1_Intron|LOC399815_uc001lgu.3_5'Flank	NM_152644	NP_689857	Q8N5W8	FA24B_HUMAN	hypothetical protein LOC196792 precursor	4						extracellular region					0		all_neural(114;0.0765)|Lung NSC(174;0.163)|all_lung(145;0.205)		Colorectal(40;0.136)|COAD - Colon adenocarcinoma(40;0.141)		TACCACCAGCGATGACAGGCA	0.493000													25	87					0	0	0.000586117	0	0
IGF2	3481	broad.mit.edu	37	11	2156625	2156625	+	Silent	SNP	G	A	A	rs140032633		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:2156625G>A	uc009yde.2	-	2	232	c.129C>T	c.(127-129)TTC>TTT	p.F43F	IGF2_uc001lvf.2_5'Flank|IGF2_uc001lvg.2_Silent_p.F43F|IGF2_uc009ydf.2_Silent_p.F99F|IGF2_uc001lvh.2_Silent_p.F43F|INS-IGF2_uc001lvi.2_RNA|MIR483_hsa-mir-483|MI0002467_5'Flank|INS-IGF2_uc001lvj.1_RNA	NM_001007139	NP_001007140	P01344	IGF2_HUMAN	insulin-like growth factor 2 isoform 1	43	B.				glucose metabolic process|ossification|phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling|positive regulation of activated T cell proliferation|positive regulation of cell division|positive regulation of glycogen (starch) synthase activity|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|skeletal system development	extracellular space	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|protein serine/threonine kinase activator activity|receptor activator activity			central_nervous_system(1)	1		all_epithelial(84;5.04e-06)|Breast(177;0.000777)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.0179)|COAD - Colon adenocarcinoma(6;0.029)	BRCA - Breast invasive adenocarcinoma(625;1.09e-05)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		CCCCACAGACGAACTGGAGGG	0.627000													6	17					0	0	0.00116845	0	0
SYT9	143425	broad.mit.edu	37	11	7441752	7441752	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:7441752G>A	uc001mfe.2	+	6	1590	c.1353G>A	c.(1351-1353)GAG>GAA	p.E451E	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	451	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		GTCACAATGAGATCATCGGCG	0.438000													11	53					0	0	0.000308642	0	0
MICAL2	9645	broad.mit.edu	37	11	12280079	12280079	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:12280079G>A	uc001mjz.2	+	25	3495	c.3207G>A	c.(3205-3207)CGG>CGA	p.R1069R	MICAL2_uc010rch.1_Silent_p.R879R|MICAL2_uc001mka.2_Silent_p.R1069R|MICAL2_uc010rci.1_Silent_p.R1048R|MICAL2_uc001mkb.2_Silent_p.R843R|MICAL2_uc001mkc.2_Silent_p.R822R|MICAL2_uc001mkd.2_Silent_p.R651R|MICAL2_uc010rcj.1_Silent_p.R281R|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	1069	Potential.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GGAAGAGACGGGCAGAGTTGA	0.423000													13	72					0	0	0.000308642	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955621	18955621	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:18955621G>A	uc001mpg.2	-	1	929	c.711C>T	c.(709-711)TTC>TTT	p.F237F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	237	Helical; Name=6; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						ATAAAAATAGGAAAAACTGAA	0.488000													6	25					0	0	0.00116845	0	0
OR5D13	390142	broad.mit.edu	37	11	55541585	55541585	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:55541585C>T	uc010ril.1	+	1	672	c.672C>T	c.(670-672)TTC>TTT	p.F224F		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TGCTTATTTTCACTACCATTA	0.438000													19	70					0	0	0.000958276	0	0
OR5L1	219437	broad.mit.edu	37	11	55579281	55579281	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:55579281C>T	uc001nhw.1	+	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				CTGAGGTCTTCCTGCTGGCCG	0.483000													24	138					0	0	0.00278032	0	0
OR5T1	390155	broad.mit.edu	37	11	56043872	56043872	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:56043872G>T	uc001nio.1	+	1	758	c.758G>T	c.(757-759)TGT>TTT	p.C253F		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					TTCTCTACATGTGGAGCTCAC	0.433000													30	124					3.1745e-13	1.26862e-12	0.001512	1	0
OR8H1	219469	broad.mit.edu	37	11	56058178	56058178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:56058178G>A	uc010rje.1	-	1	361	c.361C>T	c.(361-363)CGC>TGC	p.R121C		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GCTACGTAGCGATCATAGGCC	0.438000													30	85					0	0	0.00127121	0	0
OR5M11	219487	broad.mit.edu	37	11	56310098	56310098	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:56310098G>A	uc010rjl.1	-	1	636	c.636C>T	c.(634-636)ATC>ATT	p.I212I		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACACCAAGACGATGGTGAGGG	0.502000													7	46					0	0	0.00198382	0	0
DDB1	1642	broad.mit.edu	37	11	61081357	61081357	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:61081357T>C	uc001nrc.3	-	15	2064	c.1838A>G	c.(1837-1839)TAC>TGC	p.Y613C	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.Y613C	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	613	Interaction with CDT1.|Interaction with CUL4A.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						GAGCCCAAAGTAGAAAAGCGC	0.448000								NER					12	54					0	0	0.00136819	0	0
OTUB1	55611	broad.mit.edu	37	11	63764603	63764603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:63764603G>A	uc001nyf.1	+	6	1109	c.505G>A	c.(505-507)GAC>AAC	p.D169N	OTUB1_uc001nyg.1_Missense_Mutation_p.D212N|OTUB1_uc010rmz.1_Missense_Mutation_p.D206N|OTUB1_uc010rna.1_Missense_Mutation_p.D178N|OTUB1_uc009ypa.2_Missense_Mutation_p.D68N|OTUB1_uc009ypb.1_Missense_Mutation_p.D139N	NM_017670	NP_060140	Q96FW1	OTUB1_HUMAN	otubain 1	169	OTU.				protein K48-linked deubiquitination	cytoplasm	NEDD8-specific protease activity|omega peptidase activity|ubiquitin binding|ubiquitin-specific protease activity			breast(1)	1						GAGCACCTCCGACTACCTTGT	0.597000													21	73					0	0	0.00188189	0	0
KLC2	64837	broad.mit.edu	37	11	66031131	66031131	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:66031131G>A	uc010rov.1	+	6	996	c.753G>A	c.(751-753)CGG>CGA	p.R251R	KLC2_uc010row.1_Silent_p.R251R|KLC2_uc009yra.2_Intron|KLC2_uc001ohb.2_Silent_p.R251R|KLC2_uc010rox.1_Silent_p.R174R|KLC2_uc001ohc.2_Silent_p.R251R|KLC2_uc001ohd.2_Silent_p.R174R|KLC2_uc001ohe.1_Silent_p.R112R	NM_001134775	NP_001128247	Q9H0B6	KLC2_HUMAN	kinesin light chain 2 isoform 1	251	TPR 2.				blood coagulation	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0						CTGCTCCCAGGGATCAGAACA	0.582000													7	33					0	0	0.000157383	0	0
SERPINH1	871	broad.mit.edu	37	11	75282859	75282859	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:75282859A>G	uc001owr.2	+	5	1217	c.988A>G	c.(988-990)ATT>GTT	p.I330V	SERPINH1_uc009yug.2_Missense_Mutation_p.I330V|SERPINH1_uc001ows.2_Missense_Mutation_p.I330V|SERPINH1_uc001owt.2_Missense_Mutation_p.I113V	NM_001235	NP_001226	P50454	SERPH_HUMAN	serine (or cysteine) proteinase inhibitor, clade	330					regulation of proteolysis|response to unfolded protein	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	collagen binding|serine-type endopeptidase inhibitor activity			ovary(2)	2	Ovarian(111;0.11)					GACTGAGGCCATTGACAAGAA	0.602000													8	41					0	0	0.000673444	0	0
NAALAD2	10003	broad.mit.edu	37	11	89907060	89907060	+	Silent	SNP	A	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:89907060A>C	uc001pdf.3	+	14	1588	c.1479A>C	c.(1477-1479)TCA>TCC	p.S493S	NAALAD2_uc009yvx.2_Silent_p.S460S|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	493	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				AAGACCCTTCACCTGAAAATA	0.398000													25	154					0	0	0.00106085	0	0
KBTBD3	143879	broad.mit.edu	37	11	105923628	105923628	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:105923628C>T	uc001pja.2	-	4	2428	c.1788G>A	c.(1786-1788)GTG>GTA	p.V596V	KBTBD3_uc001pjb.2_Silent_p.V596V|KBTBD3_uc009yxm.2_Silent_p.V517V	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	592	Kelch 5.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		TAAACTGAATCACCTGGCAGT	0.378000													11	104					0	0	0.000978159	0	0
USP2	9099	broad.mit.edu	37	11	119229960	119229960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:119229960G>A	uc001pwm.3	-	5	1337	c.1042C>T	c.(1042-1044)CCG>TCG	p.P348S	USP2_uc001pwl.3_Missense_Mutation_p.P139S|USP2_uc001pwn.3_Missense_Mutation_p.P105S	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	348					cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		ACAAAGCGCGGTGCGTATCTC	0.502000													6	31					0	0	0.000157383	0	0
OR10G4	390264	broad.mit.edu	37	11	123886812	123886812	+	Silent	SNP	C	T	T	rs3017764		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:123886812C>T	uc010sac.1	+	1	531	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		AGCACTACTTCTGTGACGCAC	0.552000													16	157					0	0	0.000958276	0	0
C11orf45	219833	broad.mit.edu	37	11	128774431	128774431	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:128774431G>A	uc001qeu.2	-	2	225	c.31C>T	c.(31-33)CTG>TTG	p.L11L	KCNJ5_uc001qet.2_Intron|KCNJ5_uc009zck.2_Intron|C11orf45_uc009zcl.2_Silent_p.L11L|C11orf45_uc001qev.2_Silent_p.L11L	NM_145013	NP_659450	Q8TAV5	CK045_HUMAN	hypothetical protein LOC219833 precursor	11						extracellular region					0	all_hematologic(175;0.0641)	Lung NSC(97;0.00521)|Breast(109;0.00715)|all_lung(97;0.0111)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.00531)|LUSC - Lung squamous cell carcinoma(976;0.0193)|Lung(977;0.0195)		Gtgctactcaggtgtgcactg	0.090000													6	56					0	0	0.00116845	0	0
OPCML	4978	broad.mit.edu	37	11	132290109	132290109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:132290109G>A	uc001qgs.2	-	7	1066	c.1016C>T	c.(1015-1017)GCC>GTC	p.A339V	OPCML_uc001qgu.2_Missense_Mutation_p.A332V|OPCML_uc010sck.1_Missense_Mutation_p.A348V|OPCML_uc001qgt.2_Missense_Mutation_p.A338V|OPCML_uc010scl.1_Missense_Mutation_p.A298V	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	339					cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		GAAGAAGTGGGCTAAGAGGGT	0.502000													15	79					0	0	0.000958276	0	0
SLC6A13	6540	broad.mit.edu	37	12	369019	369019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:369019C>T	uc001qic.1	-	2	253	c.200G>A	c.(199-201)GGA>GAA	p.G67E	SLC6A13_uc009zdj.1_Missense_Mutation_p.G67E|SLC6A13_uc010sdl.1_Missense_Mutation_p.G67E|SLC6A13_uc001qid.1_Missense_Mutation_p.G67E	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	67					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CATCTCACCTCCCCCATTTTT	0.522000													14	95					0	0	0.00185496	0	0
CD163L1	283316	broad.mit.edu	37	12	7521977	7521977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:7521977C>T	uc001qsy.2	-	15	4041	c.4015G>A	c.(4015-4017)GAA>AAA	p.E1339K	CD163L1_uc010sge.1_Missense_Mutation_p.E1349K	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1339	SRCR 12.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CCAGCATCTTCCTTGTGTCCA	0.507000													10	120					0	0	0.00136819	0	0
FAM90A1	55138	broad.mit.edu	37	12	8374566	8374566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:8374566G>A	uc001qui.2	-	7	1806	c.1247C>T	c.(1246-1248)TCT>TTT	p.S416F	FAM90A1_uc001quh.2_Missense_Mutation_p.S416F	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	416							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		CTTCTCAGGAGAGTGAAATGA	0.612000													4	43					0	0	0.000602214	0	0
PZP	5858	broad.mit.edu	37	12	9353640	9353640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:9353640C>T	uc001qvl.2	-	6	547	c.518G>A	c.(517-519)CGA>CAA	p.R173Q	PZP_uc009zgl.2_Missense_Mutation_p.R42Q	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TTGTGCAATTCGATTTCTTCT	0.443000													8	86					0	0	0.000157383	0	0
PRB1	5542	broad.mit.edu	37	12	11506190	11506190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:11506190C>T	uc001qzw.1	-	4	884	c.847G>A	c.(847-849)GGA>AGA	p.G283R	PRB1_uc001qzu.1_Missense_Mutation_p.G150R|PRB1_uc001qzv.1_Missense_Mutation_p.G130R	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	344	15.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].					extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGGGTGGTCCTTGTGGCTTT	0.617000													14	150					0	0	0.000422831	0	0
PRB2	653247	broad.mit.edu	37	12	11546119	11546119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:11546119C>T	uc010shk.1	-	3	928	c.893G>A	c.(892-894)CGA>CAA	p.R298Q		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGAGGAGATCGAGAACTTCG	0.612000													30	250					0	0	0.000814825	0	0
PTPRO	5800	broad.mit.edu	37	12	15734656	15734656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:15734656C>T	uc001rcv.1	+	23	3350	c.3176C>T	c.(3175-3177)GCC>GTC	p.A1059V	PTPRO_uc001rcw.1_Missense_Mutation_p.A1031V|PTPRO_uc001rcx.1_Missense_Mutation_p.A248V|PTPRO_uc001rcy.1_Missense_Mutation_p.A248V|PTPRO_uc001rcz.1_Missense_Mutation_p.A220V|PTPRO_uc001rda.1_Missense_Mutation_p.A220V	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	1059	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				GAACCTATAGCCTATGGAGAC	0.453000													6	63					0	0	0.000274275	0	0
DNM1L	10059	broad.mit.edu	37	12	32866276	32866276	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:32866276T>C	uc001rld.2	+	6	751	c.590T>C	c.(589-591)CTT>CCT	p.L197P	DNM1L_uc010skf.1_Intron|DNM1L_uc010skg.1_RNA|DNM1L_uc001rle.2_Missense_Mutation_p.L197P|DNM1L_uc001rlf.2_Missense_Mutation_p.L197P|DNM1L_uc010skh.1_Missense_Mutation_p.L263P|DNM1L_uc001rlg.2_Missense_Mutation_p.L263P|DNM1L_uc001rlh.2_Missense_Mutation_p.L250P|DNM1L_uc010ski.1_Intron	NM_012062	NP_036192	O00429	DNM1L_HUMAN	dynamin 1-like isoform 1	197	GTPase domain.				cellular component disassembly involved in apoptosis|mitochondrial fragmentation involved in apoptosis|mitochondrial membrane organization|positive regulation of mitochondrial fission	cis-Golgi network|cytosol|endomembrane system|endoplasmic reticulum|mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2	Lung NSC(5;2.15e-06)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TCAGAGGCACTTAAAATTTCA	0.368000													17	81					0	0	0.000422831	0	0
SYT10	341359	broad.mit.edu	37	12	33579198	33579198	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:33579198C>T	uc001rll.1	-	2	681	c.384G>A	c.(382-384)GAG>GAA	p.E128E	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	128	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTATTGCAGGCTCAATAGCTT	0.393000													15	158					0	0	0.00074312	0	0
ABCD2	225	broad.mit.edu	37	12	40012941	40012941	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:40012941G>A	uc001rmb.2	-	1	903	c.477C>T	c.(475-477)TTC>TTT	p.F159F		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	159	ABC transmembrane type-1.|Helical; (Potential).|Interaction with PEX19.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						CACTGTTGACGAAGGTAGCAG	0.423000													10	66					0	0	0.000442599	0	0
LALBA	3906	broad.mit.edu	37	12	48962902	48962902	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:48962902G>A	uc001rrt.2	-	2	281	c.255C>T	c.(253-255)GTC>GTT	p.V85V		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	85					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						TTGACTGAGGGACCTGGCTGC	0.468000													12	107					0	0	0.000978159	0	0
RND1	27289	broad.mit.edu	37	12	49255887	49255887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:49255887C>T	uc001rsn.2	-	3	326	c.223G>A	c.(223-225)GAT>AAT	p.D75N		NM_014470	NP_055285	Q92730	RND1_HUMAN	GTP-binding protein RHO6 precursor	75					actin filament organization|axon guidance|negative regulation of cell adhesion|neuron remodeling|small GTPase mediated signal transduction	adherens junction|cytoskeleton|cytosol	GTP binding|GTPase activity|receptor binding			ovary(1)	1						CGGACATTATCGTAGTAGGGA	0.507000													7	71					0	0	0.000274275	0	0
SLC4A8	9498	broad.mit.edu	37	12	51888782	51888782	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:51888782C>T	uc001rys.1	+	21	3001	c.2823C>T	c.(2821-2823)TTC>TTT	p.F941F	SLC4A8_uc001rym.2_Silent_p.F888F|SLC4A8_uc001ryn.2_Silent_p.F888F|SLC4A8_uc001ryo.2_Silent_p.F888F|SLC4A8_uc010snj.1_Silent_p.F968F|SLC4A8_uc001ryr.2_Silent_p.F941F	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	941	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		AGCCAGATTTCATCTACCTGC	0.527000													14	94					0	0	0.000422831	0	0
KRT73	319101	broad.mit.edu	37	12	53002076	53002076	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:53002076C>T	uc001sas.2	-	9	1562	c.1527G>A	c.(1525-1527)GGG>GGA	p.G509G		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	509	Tail.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCCTGGCTTCCCCACGGGGGC	0.582000													8	53					0	0	0.000157383	0	0
KRT73	319101	broad.mit.edu	37	12	53004471	53004471	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:53004471A>G	uc001sas.2	-	7	1294	c.1259T>C	c.(1258-1260)CTT>CCT	p.L420P		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	420	Rod.|Coil 2.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CACGCTCAAAAGCTCTTGGTA	0.622000													3	66					0	0	6.4e-05	0	0
GTSF1	121355	broad.mit.edu	37	12	54858877	54858877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:54858877G>A	uc001sgb.2	-	3	177	c.91C>T	c.(91-93)CCT>TCT	p.P31S		NM_144594	NP_653195	Q8WW33	GTSF1_HUMAN	gametocyte specific factor 1	31	CHHC-type.						metal ion binding				0		Myeloproliferative disorder(1001;0.00452)				AGATGATAAGGAAACCTGCAA	0.403000													12	146					0	0	0.00244969	0	0
MUCL1	118430	broad.mit.edu	37	12	55252002	55252002	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:55252002C>T	uc001sgk.2	+	4	317	c.249C>T	c.(247-249)CTC>CTT	p.L83L		NM_058173	NP_477521	Q96DR8	MUCL1_HUMAN	small breast epithelial mucin precursor	83						extracellular region|membrane					0						TTGGGGATCTCCCGAATGGTA	0.413000													21	142					0	0	0.00047179	0	0
OR10P1	121130	broad.mit.edu	37	12	56030861	56030861	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:56030861C>G	uc010spq.1	+	1	186	c.186C>G	c.(184-186)TTC>TTG	p.F62L		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						TGTACTTCTTCCTGCGCCAAC	0.602000													12	77					0	0	0.000958276	0	0
PTPRB	5787	broad.mit.edu	37	12	71029486	71029486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:71029486C>T	uc001swc.3	-	2	460	c.416G>A	c.(415-417)GGA>GAA	p.G139E	PTPRB_uc001swa.3_Missense_Mutation_p.G139E|PTPRB_uc001swd.3_Missense_Mutation_p.G138E|PTPRB_uc009zrr.1_Intron|PTPRB_uc001swe.2_Missense_Mutation_p.G139E	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GACCAGTTTTCCCTCCTTGTT	0.408000													5	64					0	0	0.00198382	0	0
GLIPR1	11010	broad.mit.edu	37	12	75875797	75875797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:75875797G>A	uc001sxs.2	+	2	506	c.358G>A	c.(358-360)GAA>AAA	p.E120K	GLIPR1_uc009zsb.1_Missense_Mutation_p.E120K	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	120					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						CTGGTATGACGAAATCCAGGA	0.453000													9	56					0	0	0.000442599	0	0
SLC6A15	55117	broad.mit.edu	37	12	85264378	85264378	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:85264378G>A	uc001szv.2	-	9	1867	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	SLC6A15_uc010sul.1_Silent_p.F351F|SLC6A15_uc001szw.1_Silent_p.F166F	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	458	Helical; Name=8; (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						TCACTGACCAGAAGGGAGATG	0.443000													20	96					0	0	0.00278032	0	0
PLEKHG7	440107	broad.mit.edu	37	12	93139326	93139326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:93139326G>A	uc001tcj.2	+	5	504	c.274G>A	c.(274-276)GAG>AAG	p.E92K		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G	92	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						CTTTTATCTTGAGAGCCTGAG	0.403000													26	195					0	0	0.00178596	0	0
NUDT4	11163	broad.mit.edu	37	12	93793086	93793087	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:93793086_93793087CC>AT	uc001tcm.2	+	5	872_873	c.474_475CC>AT	c.(472-477)TCCCTT>TCATTT	p.L159F	NUDT4_uc010sup.1_Missense_Mutation_p.L159F|NUDT4_uc001tcn.2_Missense_Mutation_p.L107F|NUDT4_uc010suq.1_Missense_Mutation_p.L108F|NUDT4_uc001tco.2_Missense_Mutation_p.L107F	NM_019094	NP_061967	Q9NZJ9	NUDT4_HUMAN	nudix-type motif 4 isoform alpha	159					calcium-mediated signaling|cyclic nucleotide metabolic process|cyclic-nucleotide-mediated signaling|intracellular transport|regulation of RNA export from nucleus	cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0						CAGTCCCTTCCCTTCCGGATAA	0.475000													10	246					0	0	6.4e-05	0	0
SLC17A8	246213	broad.mit.edu	37	12	100774643	100774643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:100774643C>T	uc010svi.1	+	2	579	c.266C>T	c.(265-267)TCC>TTC	p.S89F	SLC17A8_uc009ztx.2_Missense_Mutation_p.S89F	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	89	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TTCTGCATTTCCTTTGGGATC	0.517000													10	148					0	0	0.000673444	0	0
KSR2	283455	broad.mit.edu	37	12	118199021	118199021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:118199021G>A	uc001two.2	-	4	749	c.694C>T	c.(694-696)CCG>TCG	p.P232S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	261	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GTGCGCGGCGGGGTGCGGACC	0.746000													13	102					0	0	0.000308642	0	0
KSR2	283455	broad.mit.edu	37	12	118405883	118405883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:118405883C>T	uc001two.2	-	1	146	c.91G>A	c.(91-93)GAG>AAG	p.E31K		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	60					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACACCTACCTCCAGGGTCCGG	0.453000													12	168					0	0	0.00136819	0	0
ULK1	8408	broad.mit.edu	37	12	132394839	132394839	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:132394839G>A	uc001uje.2	+	11	1117	c.849G>A	c.(847-849)TCG>TCA	p.S283S		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	283					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CCAGCCCCTCGGTCAGGAAAT	0.617000													17	119					0	0	0.00188189	0	0
EP400	57634	broad.mit.edu	37	12	132551330	132551330	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:132551330C>T	uc001ujn.2	+	48	8600	c.8565C>T	c.(8563-8565)CCC>CCT	p.P2855P	EP400_uc001ujl.2_Silent_p.P2854P|EP400_uc001ujm.2_Silent_p.P2774P|EP400_uc001ujp.2_Intron	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2891					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCCGGGTTCCCACTTCTCAGC	0.572000													5	49					0	0	0.00116845	0	0
FLT3	2322	broad.mit.edu	37	13	28608116	28608116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:28608116C>T	uc001urw.2	-	15	1932	c.1850G>A	c.(1849-1851)GGA>GAA	p.G617E	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.G617E	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	617	Protein kinase.|ATP (By similarity).|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity	p.G617_S618ins21(1)		haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AGCACCTGATCCTAGTACCTT	0.403000			Mis|O		AML|ALL								29	161					0	0	0.00127121	0	0
LCP1	3936	broad.mit.edu	37	13	46716547	46716547	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:46716547T>A	uc001vaz.3	-	13	1508	c.1382A>T	c.(1381-1383)AAC>ATC	p.N461I	LCP1_uc010ack.2_Missense_Mutation_p.N30I|LCP1_uc001vay.3_Missense_Mutation_p.N58I|LCP1_uc001vba.3_Missense_Mutation_p.N461I	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	461	Actin-binding 2.|CH 3.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		TACCGCGTAGTTACAATTCTC	0.373000			T	BCL6	NHL 								6	54					0	0	0.00198382	0	0
ARL11	115761	broad.mit.edu	37	13	50204908	50204908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:50204908G>A	uc001vdf.1	+	2	471	c.325G>A	c.(325-327)GAC>AAC	p.D109N		NM_138450	NP_612459	Q969Q4	ARL11_HUMAN	ADP-ribosylation factor-like 11	109					small GTPase mediated signal transduction	intracellular	GTP binding|protein binding				0		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.119)|Kidney(9;0.169)	GBM - Glioblastoma multiforme(99;1.67e-09)		AGTCCTGAACGACCCCAACAT	0.567000													17	101					0	0	0.000958276	0	0
LECT1	11061	broad.mit.edu	37	13	53282744	53282744	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:53282744C>G	uc001vhf.2	-	6	827	c.716G>C	c.(715-717)GGA>GCA	p.G239A	LECT1_uc001vhg.2_Missense_Mutation_p.G239A|LECT1_uc001vhh.2_Missense_Mutation_p.G228A	NM_007015	NP_008946	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1 isoform 1	239					cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				ovary(2)	2		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		ATTCAGTCTTCCAGCGCCTGG	0.448000													15	74					0	0	0.000422831	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454471	84454471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:84454471C>T	uc001vlk.2	-	1	2058	c.1172G>A	c.(1171-1173)CGA>CAA	p.R391Q		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	391	Extracellular (Potential).|LRR 7.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GTGCGATTTTCGGATGCTGTG	0.448000													32	139					0	0	0.0024448	0	0
ABCC4	10257	broad.mit.edu	37	13	95858840	95858840	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:95858840G>A	uc001vmd.3	-	8	1226	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	ABCC4_uc010afk.2_Silent_p.F369F|ABCC4_uc001vme.2_Silent_p.F369F|ABCC4_uc010tih.1_Silent_p.F294F|ABCC4_uc001vmf.2_Silent_p.F326F|ABCC4_uc010afl.1_Silent_p.F326F|ABCC4_uc010afm.1_Silent_p.F382F	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	369	ABC transmembrane type-1 1.|Helical; (Potential).				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TGGCTGAGGGGAAGAAGAGGG	0.547000													7	77					0	0	0.00198382	0	0
DOCK9	23348	broad.mit.edu	37	13	99489772	99489772	+	Silent	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:99489772A>G	uc001vnt.2	-	39	4279	c.4224T>C	c.(4222-4224)CTT>CTC	p.L1408L	DOCK9_uc001vnw.2_Silent_p.L1407L|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Silent_p.L1408L|DOCK9_uc001vnq.2_5'UTR|DOCK9_uc001vnr.2_Silent_p.L51L|DOCK9_uc010tin.1_Silent_p.L51L|DOCK9_uc001vns.2_5'UTR|DOCK9_uc010tio.1_Silent_p.L100L|DOCK9_uc010tip.1_Silent_p.L118L|DOCK9_uc001vnu.1_5'UTR|DOCK9_uc010tiq.1_Silent_p.L386L	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1408					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TAAATAGAGAAAGCGTGTCCA	0.448000													8	37					0	0	0.000673444	0	0
COL4A1	1282	broad.mit.edu	37	13	110819513	110819513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:110819513C>T	uc001vqw.3	-	44	4063	c.3941G>A	c.(3940-3942)GGA>GAA	p.G1314E	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1314	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			ACCTTGAAATCCTGGAACTCC	0.537000													19	247					0	0	0.00152264	0	0
COL4A1	1282	broad.mit.edu	37	13	110828850	110828850	+	Silent	SNP	A	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:110828850A>C	uc001vqw.3	-	36	3101	c.2979T>G	c.(2977-2979)GGT>GGG	p.G993G	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	993	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TACCTGGATCACCTTTAGGTC	0.512000													6	46					0	0	0.00198382	0	0
TFDP1	7027	broad.mit.edu	37	13	114287473	114287473	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr13:114287473T>C	uc001vtw.2	+	6	559	c.347T>C	c.(346-348)CTA>CCA	p.L116P	TFDP1_uc010tkd.1_Missense_Mutation_p.L21P|TFDP1_uc010tke.1_Missense_Mutation_p.L21P|TFDP1_uc001vty.3_Missense_Mutation_p.L116P|TFDP1_uc001vtx.2_5'UTR|TFDP1_uc010agx.2_Missense_Mutation_p.L116P	NM_007111	NP_009042	Q14186	TFDP1_HUMAN	transcription factor Dp-1	116	Potential.				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			lung(4)|ovary(2)|skin(1)	7	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.132)|all_epithelial(44;0.0731)|all_lung(25;0.149)|Breast(118;0.153)	all cancers(43;0.0576)			GGCAAGGGCCTACGGCATTTC	0.527000										TSP Lung(29;0.18)			13	45					0	0	0.00244969	0	0
FAM158A	51016	broad.mit.edu	37	14	24610511	24610511	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:24610511C>G	uc001wmi.2	-	2	166	c.3G>C	c.(1-3)ATG>ATC	p.M1I		NM_016049	NP_057133	Q9Y3B6	F158A_HUMAN	hypothetical protein LOC51016	1											0						CCACCTCCCCCATGGCGAGCG	0.657000											OREG0022618	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	46					0	0	6.4e-05	0	0
TGM1	7051	broad.mit.edu	37	14	24718595	24718595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:24718595C>T	uc001wod.2	-	15	2502	c.2378G>A	c.(2377-2379)GGG>GAG	p.G793E	TGM1_uc010tog.1_Missense_Mutation_p.G351E	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	793					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	GAAGAAGCCCCCATCCCCAGG	0.632000													5	51					0	0	0.00116845	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885124	24885124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:24885124C>T	uc001wpf.3	+	9	4487	c.4169C>T	c.(4168-4170)CCC>CTC	p.P1390L		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1390	Helical; (Potential).				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GAGCTCCTGCCCCTCTGGAGG	0.627000													9	73					0	0	0.000274275	0	0
AKAP6	9472	broad.mit.edu	37	14	33004824	33004824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:33004824C>T	uc001wrq.2	+	3	559	c.389C>T	c.(388-390)TCC>TTC	p.S130F	AKAP6_uc010aml.2_Missense_Mutation_p.S127F	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	130					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		ACAGAGTTCTCCCTAAAGCTG	0.478000													10	81					0	0	0.000442599	0	0
BAZ1A	11177	broad.mit.edu	37	14	35231092	35231092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:35231092G>A	uc001wsk.2	-	24	4682	c.4114C>T	c.(4114-4116)CCC>TCC	p.P1372S	BAZ1A_uc001wsl.2_Missense_Mutation_p.P1340S	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	1372					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		GGGAAGTTGGGACTATTTTCT	0.413000													7	141					0	0	0.000157383	0	0
KCNH5	27133	broad.mit.edu	37	14	63246485	63246485	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:63246485G>A	uc001xfx.2	-	10	2031	c.1980C>T	c.(1978-1980)TTC>TTT	p.F660F	KCNH5_uc001xfy.2_Intron|KCNH5_uc001xfz.1_Silent_p.F602F	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	660	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GATTCCTTGAGAAGGAGTTTG	0.443000													11	101					0	0	0.00136819	0	0
C14orf50	145376	broad.mit.edu	37	14	65054821	65054821	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:65054821G>A	uc001xhl.1	+	11	987	c.891_splice	c.e11-1	p.R297_splice	C14orf50_uc001xhm.1_Splice_Site_p.R27_splice	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376											skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		CTCCCCGACAGGAGAATGATG	0.343000													7	82					0	0	0.00198382	0	0
CCDC88C	440193	broad.mit.edu	37	14	91760534	91760534	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:91760534C>T	uc010aty.2	-	23	4194	c.4095G>A	c.(4093-4095)GAG>GAA	p.E1365E		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1365	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCTTCTGCTCCTCATGGTACT	0.547000													12	173					0	0	0.00244969	0	0
ADAM6	8755	broad.mit.edu	37	14	107099220	107099220	+	RNA	SNP	A	T	T	rs148129115	by1000genomes	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr14:107099220A>T	uc010tyt.1	-	98		c.4502T>A								Parts of antibodies, mostly variable regions.												0						GTCTCTGGAGATGGTGAATCG	0.498000													4	49					0	0	0.00024832	0	0
CYFIP1	23191	broad.mit.edu	37	15	22933650	22933650	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:22933650T>C	uc001yus.2	+	7	763	c.659T>C	c.(658-660)ATC>ACC	p.I220T	CYFIP1_uc001yut.2_Missense_Mutation_p.I220T|CYFIP1_uc010aya.1_Missense_Mutation_p.I248T	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	220					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		CATAACAAGATCACACAGGTA	0.522000													6	66					0	0	0.000157383	0	0
C15orf2	23742	broad.mit.edu	37	15	24922823	24922823	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:24922823C>T	uc001ywo.2	+	1	2283	c.1809C>T	c.(1807-1809)TCC>TCT	p.S603S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	603					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TCCCAAATTCCCAAATACATT	0.458000													23	61					0	0	0.00229938	0	0
ATP10A	57194	broad.mit.edu	37	15	25936910	25936910	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:25936910G>A	uc010ayu.2	-	15	3223	c.3117C>T	c.(3115-3117)ATC>ATT	p.I1039I		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1039	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		CTGCCACCTGGATCATGCTGA	0.468000													52	208					0	0	0.000781405	0	0
C15orf23	90417	broad.mit.edu	37	15	40675119	40675119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:40675119C>T	uc001zll.2	+	1	198	c.83C>T	c.(82-84)CCG>CTG	p.P28L	C15orf23_uc010ucp.1_Missense_Mutation_p.P28L|C15orf23_uc001zlo.2_Missense_Mutation_p.P28L|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	28						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		CACCCACTTCCGCCTAGCTAC	0.567000													15	56					0	0	0.000566183	0	0
STRC	161497	broad.mit.edu	37	15	43892249	43892249	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:43892249G>A	uc001zsf.2	-	28	5226	c.5148C>T	c.(5146-5148)GTC>GTT	p.V1716V	STRC_uc010bdl.2_Silent_p.V943V|STRC_uc001zse.2_Silent_p.V234V	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1716					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		GCTCAGGAGTGACAGCCACAG	0.547000													8	41					0	0	0.000442599	0	0
HERC1	8925	broad.mit.edu	37	15	63955362	63955362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:63955362G>A	uc002amp.2	-	44	8870	c.8722C>T	c.(8722-8724)CGG>TGG	p.R2908W		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2908					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CCTTCTCTCCGACTTTGATTC	0.403000													27	229					0	0	0.00178596	0	0
LRRC49	54839	broad.mit.edu	37	15	71302157	71302157	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:71302157C>T	uc002asw.2	+	13	1666	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F	LRRC49_uc002asu.2_Silent_p.F463F|LRRC49_uc002asx.2_Silent_p.F429F|LRRC49_uc010ukf.1_Silent_p.F478F|LRRC49_uc002asy.2_Silent_p.F179F|LRRC49_uc002asz.2_Silent_p.F445F	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	473						cytoplasm|microtubule				ovary(1)	1						ACCTTAAATTCAAGGAAACAA	0.358000													17	60					0	0	0.00074312	0	0
TBC1D21	161514	broad.mit.edu	37	15	74173842	74173842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:74173842G>A	uc002avz.2	+	2	246	c.163G>A	c.(163-165)GAA>AAA	p.E55K	TBC1D21_uc010ulc.1_Intron	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	55						intracellular	Rab GTPase activator activity			ovary(2)	2						TAACATCCTGGAAAGGGTGGG	0.542000													12	55					0	0	0.00244969	0	0
CPEB1	64506	broad.mit.edu	37	15	83222286	83222286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:83222286G>A	uc002bit.2	-	7	1311	c.1174C>T	c.(1174-1176)CGT>TGT	p.R392C	CPEB1_uc002biq.2_Missense_Mutation_p.R257C|CPEB1_uc002bir.2_Missense_Mutation_p.R257C|CPEB1_uc002bis.2_Missense_Mutation_p.R257C|CPEB1_uc010uod.1_Missense_Mutation_p.R106C|CPEB1_uc010uoe.1_Missense_Mutation_p.R335C|CPEB1_uc002biu.2_Missense_Mutation_p.R359C|CPEB1_uc010uof.1_Missense_Mutation_p.R257C|CPEB1_uc002biv.2_Missense_Mutation_p.R332C|CPEB1_uc002bip.2_Missense_Mutation_p.R106C	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	332	RRM 1.|Necessary for stress granule assembly and correct localization in dcp1 bodies.				mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			CCAAAAACACGGAAGGTGTTA	0.458000													4	26					0	0	0.00024832	0	0
C15orf51	196968	broad.mit.edu	37	15	100341233	100341233	+	RNA	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:100341233G>A	uc010urx.1	-	3		c.414C>T			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_Intron|C15orf51_uc010bow.2_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GGTGGTCTTGGGCTTCGCACC	0.572000													4	38					0	0	0.00024832	0	0
SRL	6345	broad.mit.edu	37	16	4242301	4242301	+	Silent	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:4242301A>G	uc002cvz.3	-	6	1288	c.1275T>C	c.(1273-1275)GGT>GGC	p.G425G	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	884						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						CCAGAAAGCAACCTCCCATGT	0.547000													3	76					0	0	6.4e-05	0	0
TMEM186	25880	broad.mit.edu	37	16	8890377	8890377	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:8890377C>G	uc002cze.2	-	2	108	c.74G>C	c.(73-75)TGG>TCG	p.W25S	PMM2_uc002czf.3_5'Flank|PMM2_uc010uyf.1_5'Flank|PMM2_uc010uyg.1_5'Flank|PMM2_uc010uyh.1_5'Flank|PMM2_uc010buj.2_5'Flank|PMM2_uc010uyi.1_5'Flank|PMM2_uc010uye.1_5'Flank	NM_015421	NP_056236	Q96B77	TM186_HUMAN	transmembrane protein 186	25						integral to membrane|mitochondrion				ovary(1)	1						ACTGCAGCACCACAGCCCATG	0.552000													4	65					0	0	0.00024832	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857008	9857008	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:9857008A>T	uc002czo.3	-	13	4941	c.4393T>A	c.(4393-4395)TAA>AAA	p.*1465K	GRIN2A_uc010uym.1_Nonstop_Mutation_p.*1465K|GRIN2A_uc010uyn.1_3'UTR|GRIN2A_uc002czr.3_3'UTR	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1465					response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GAAGATTTTTAAACATCAGAT	0.378000													6	49					0	0	0.00116845	0	0
KIAA0430	9665	broad.mit.edu	37	16	15704908	15704908	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:15704908G>A	uc002ddr.2	-	19	3868	c.3675C>T	c.(3673-3675)ATC>ATT	p.I1225I	KIAA0430_uc002ddq.2_Silent_p.I1059I|KIAA0430_uc010uzv.1_Silent_p.I1221I|KIAA0430_uc010uzw.1_Silent_p.I1224I	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1224						peroxisome	nucleotide binding|RNA binding				0						TCTCTGATACGATGTCAATCA	0.403000													19	67					0	0	0.00121646	0	0
DNAH3	55567	broad.mit.edu	37	16	20976501	20976501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:20976501G>A	uc010vbe.1	-	53	8705	c.8705C>T	c.(8704-8706)GCT>GTT	p.A2902V	DNAH3_uc010vbd.1_Missense_Mutation_p.A337V	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2902	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCGTTTGGGAGCCACCACCTT	0.582000													36	112					0	0	0.00058488	0	0
COG7	91949	broad.mit.edu	37	16	23415116	23415116	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:23415116G>A	uc002dlo.2	-	13	1890	c.1702C>T	c.(1702-1704)CGA>TGA	p.R568*		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	568					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		AGCGCTGCTCGAGGTGCAGCC	0.502000													11	43					0	0	0.000673444	0	0
SBK1	388228	broad.mit.edu	37	16	28330371	28330371	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:28330371C>T	uc002dpd.2	+	3	1071	c.282C>T	c.(280-282)TTC>TTT	p.F94F		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	94	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						TGAAGAACTTCCTACGGGAGG	0.522000													14	134					0	0	0.000422831	0	0
TMEM219	124446	broad.mit.edu	37	16	29974552	29974552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:29974552C>T	uc002duw.2	+	2	255	c.88C>T	c.(88-90)CTT>TTT	p.L30F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TMEM219_uc002duy.2_Missense_Mutation_p.L30F|TMEM219_uc010bzk.1_Missense_Mutation_p.L30F|TMEM219_uc002duz.2_Missense_Mutation_p.L30F|TMEM219_uc010bzl.1_RNA	NM_194280	NP_919256	Q86XT9	TM219_HUMAN	transmembrane protein 219	30	Helical; (Potential).					integral to membrane					0						CCTGCTGCTCCTTGGCCTCTC	0.657000													18	65					0	0	0.00074312	0	0
MAPK3	5595	broad.mit.edu	37	16	30129473	30129473	+	Silent	SNP	G	A	A	rs143182888		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:30129473G>A	uc002dws.2	-	4	655	c.555C>T	c.(553-555)TTC>TTT	p.F185F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAPK3_uc002dwr.2_Silent_p.F71F|MAPK3_uc002dwv.3_Silent_p.F185F|MAPK3_uc002dwt.2_Silent_p.F185F|MAPK3_uc002dwu.2_RNA|MAPK3_uc010bzp.2_RNA	NM_002746	NP_002737	P27361	MK03_HUMAN	mitogen-activated protein kinase 3 isoform 1	185	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|cellular response to mechanical stimulus|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|interleukin-1-mediated signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription initiation from RNA polymerase I promoter	cytosol|nucleoplasm	ATP binding|MAP kinase activity|phosphatase binding				0					Arsenic trioxide(DB01169)|Isoproterenol(DB01064)|Simvastatin(DB00641)|Sulindac(DB00605)	GGGCCAGGCCGAAATCACAAA	0.592000													8	27					0	0	0.000442599	0	0
MYST1	84148	broad.mit.edu	37	16	31141410	31141410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:31141410C>T	uc002eay.2	+	7	862	c.844C>T	c.(844-846)CCG>TCG	p.P282S	MYST1_uc002eax.2_Missense_Mutation_p.P282S|MYST1_uc002eaz.2_Missense_Mutation_p.P124S|MYST1_uc002eba.2_Missense_Mutation_p.P66S|MYST1_uc002ebb.2_RNA	NM_032188	NP_115564	Q9H7Z6	MYST1_HUMAN	MYST histone acetyltransferase 1 isoform 1	282					histone H4-K16 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex|MSL complex	histone acetyltransferase activity|metal ion binding|methylated histone residue binding|transcription factor binding			ovary(1)	1						TGACGTGGAGCCGTTCGTCTT	0.562000													49	219					0	0	0.000781405	0	0
ABCC11	85320	broad.mit.edu	37	16	48218385	48218385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:48218385G>A	uc002eff.1	-	22	3574	c.3224C>T	c.(3223-3225)TCC>TTC	p.S1075F	ABCC11_uc002efg.1_Missense_Mutation_p.S1075F|ABCC11_uc002efh.1_Missense_Mutation_p.S1075F|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	1075	Cytoplasmic (Potential).|ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GACTTTAAAGGAGTAGGGGGT	0.557000									Cerumen_Type				15	59					0	0	0.000308642	0	0
SALL1	6299	broad.mit.edu	37	16	51173168	51173168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:51173168G>A	uc010vgs.1	-	2	2996	c.2965C>T	c.(2965-2967)CTC>TTC	p.L989F	SALL1_uc010vgr.1_Missense_Mutation_p.L892F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	989					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AAAGGGAAGAGGATCCCCAAA	0.433000													5	43					0	0	0.00116845	0	0
CES7	221223	broad.mit.edu	37	16	55880368	55880368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:55880368G>A	uc002eip.2	-	13	1872	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	CES7_uc002eio.2_Missense_Mutation_p.P525S|CES7_uc002eiq.2_Missense_Mutation_p.P336S|CES7_uc002eir.2_Missense_Mutation_p.P469S	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	575						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		ACTTCTCAAGGAGCACAAAAG	0.468000													15	65					0	0	0.00244969	0	0
GPR114	221188	broad.mit.edu	37	16	57600608	57600608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:57600608C>T	uc002elx.3	+	7	729	c.644C>T	c.(643-645)TCC>TTC	p.S215F	GPR114_uc010vhr.1_Missense_Mutation_p.S215F|GPR114_uc002ely.2_Missense_Mutation_p.S215F	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	215	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						GAGCAGCCCTCCCACTCTCAG	0.607000													17	57					0	0	0.000958276	0	0
CDH8	1006	broad.mit.edu	37	16	61859019	61859019	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:61859019G>A	uc002eog.1	-	5	984	c.732C>T	c.(730-732)ATC>ATT	p.I244I	CDH8_uc002eoh.2_Silent_p.I13I	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	244	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		CTTTGGCTTGGATAACAACCA	0.458000													12	93					0	0	0.00185496	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333000													2	16					0	0	6.4e-05	0	0
KCNG4	93107	broad.mit.edu	37	16	84271028	84271028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:84271028G>A	uc010voc.1	-	2	185	c.64C>T	c.(64-66)CCT>TCT	p.P22S	KCNG4_uc002fhu.1_Missense_Mutation_p.P22S	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	22	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						TGACTCCAAGGGCTGTGGGAA	0.627000													9	56					0	0	0.000673444	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84922916	84922916	+	Silent	SNP	G	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:84922916G>T	uc010voh.1	+	14	1613	c.1386G>T	c.(1384-1386)GTG>GTT	p.V462V	CRISPLD2_uc010vog.1_Intron|CRISPLD2_uc002fio.2_Silent_p.V461V	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	462	LCCL 2.					extracellular region|transport vesicle					0						TGATGCCCGTGGATAAAAAGA	0.562000													12	85					1.41608e-15	5.66958e-15	0.00185496	1	0
RTN4RL1	146760	broad.mit.edu	37	17	1840442	1840442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:1840442G>A	uc002ftp.2	-	2	693	c.674C>T	c.(673-675)ACC>ATC	p.T225I		NM_178568	NP_848663	Q86UN2	R4RL1_HUMAN	reticulon 4 receptor-like 1 precursor	225	LRR 8.				axon regeneration	anchored to plasma membrane	receptor activity				0						GAGGAAGAGGGTGGTCAGCCT	0.652000													5	18					0	0	0.00198382	0	0
METT10D	79066	broad.mit.edu	37	17	2323568	2323568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:2323568G>A	uc002fut.2	-	10	1533	c.1385C>T	c.(1384-1386)CCC>CTC	p.P462L	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_RNA|METT10D_uc002fuv.2_Intron|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_Missense_Mutation_p.P244L	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	462							methyltransferase activity				0						ATCCTCCGTGGGTTCCGGGTT	0.632000													23	123					0	0	0.000586117	0	0
USP43	124739	broad.mit.edu	37	17	9631342	9631342	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:9631342T>C	uc010cod.2	+	15	2407	c.2407T>C	c.(2407-2409)TCC>CCC	p.S803P	USP43_uc002gma.3_Missense_Mutation_p.S492P|USP43_uc010vva.1_Missense_Mutation_p.S798P|USP43_uc010coe.2_Missense_Mutation_p.S600P|USP43_uc002gmc.3_Missense_Mutation_p.S315P	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	803					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						ACCCACCACTTCCCGAGCCAA	0.562000													4	40					0	0	0.00116845	0	0
DNAH9	1770	broad.mit.edu	37	17	11535910	11535910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:11535910G>A	uc002gne.2	+	8	1593	c.1525G>A	c.(1525-1527)GAA>AAA	p.E509K		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	509	Potential.|Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCAGGACTTTGAAAATGACGT	0.393000													12	62					0	0	0.00185496	0	0
RAB34	83871	broad.mit.edu	37	17	27042487	27042487	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:27042487G>A	uc002hce.2	-	6	1042	c.418C>T	c.(418-420)CTG>TTG	p.L140L	RAB34_uc002hcg.2_Silent_p.L140L|RAB34_uc002hcf.2_Silent_p.L141L|RAB34_uc010was.1_Silent_p.L197L|RAB34_uc010wat.1_Silent_p.L197L|RAB34_uc002hch.2_Silent_p.L140L|RAB34_uc010wau.1_Silent_p.L118L|RAB34_uc010wav.1_Silent_p.L198L	NM_031934	NP_114140	Q9BZG1	RAB34_HUMAN	Ras-related protein RAB34 isoform 1	140					protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	Lung NSC(42;0.00431)					GTATGTTCCAGAGATGCCACA	0.493000													8	66					0	0	0.000274275	0	0
CPD	1362	broad.mit.edu	37	17	28772936	28772936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:28772936C>T	uc002hfb.1	+	12	2786	c.2771C>T	c.(2770-2772)TCA>TTA	p.S924L	CPD_uc010wbo.1_Missense_Mutation_p.S677L|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	924	Extracellular (Potential).|Carboxypeptidase-like 3.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						CGCTCCTCCTCAAATCTGGCT	0.393000													15	124					0	0	0.000308642	0	0
SLFN13	146857	broad.mit.edu	37	17	33769237	33769237	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:33769237G>C	uc002hjk.1	-	3	1597	c.1267C>G	c.(1267-1269)CTA>GTA	p.L423V	SLFN13_uc010wch.1_Missense_Mutation_p.L423V|SLFN13_uc002hjl.2_Missense_Mutation_p.L423V|SLFN13_uc010ctt.2_Missense_Mutation_p.L105V|SLFN13_uc002hjm.2_Missense_Mutation_p.L92V	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	423						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		AACTCCTTTAGTCCTTCATGC	0.463000													7	57					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	17	37186429	37186430	+	RNA	DNP	CC	TT	TT			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:37186429_37186430CC>TT	uc002hrd.1	+	1		c.271_272CC>TT								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		AATGAGAACCCCTCTCCAACCC	0.545000													8	78					0	0	6.4e-05	0	0
KRT35	3886	broad.mit.edu	37	17	39637220	39637220	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:39637220G>C	uc002hws.2	-	1	173	c.130C>G	c.(130-132)CCT>GCT	p.P44A		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	44	Head.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				CTGGCCACAGGGGAGAGACTT	0.617000													3	63					0	0	6.4e-05	0	0
KRT15	3866	broad.mit.edu	37	17	39671762	39671762	+	Silent	SNP	G	A	A	rs142117852	byFrequency	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:39671762G>A	uc002hwy.2	-	6	1400	c.1209C>T	c.(1207-1209)ATC>ATT	p.I403I	KRT15_uc002hwz.2_Silent_p.I305I|KRT15_uc002hxa.2_Silent_p.I238I|KRT15_uc002hxb.1_Silent_p.I238I	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	403	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				GGTAAGTAGCGATCTCCTGCT	0.607000													7	81					0	0	0.000274275	0	0
MPP3	4356	broad.mit.edu	37	17	41879100	41879100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:41879100G>A	uc002iei.3	-	20	1893	c.1727C>T	c.(1726-1728)ACT>ATT	p.T576I	MPP3_uc002ieh.2_Missense_Mutation_p.T601I|MPP3_uc002iej.2_RNA	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	576					signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		TACCCAGTGAGTGTCCTTGCT	0.373000													9	85					0	0	0.000978159	0	0
COL1A1	1277	broad.mit.edu	37	17	48262930	48262930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:48262930G>A	uc002iqm.2	-	51	4454	c.4328C>T	c.(4327-4329)GCC>GTC	p.A1443V		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1443	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GTCCAAGGGGGCCACATCGAT	0.607000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						15	88					0	0	0.000422831	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342311	60342311	+	RNA	SNP	G	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:60342311G>T	uc010woz.1	-	14		c.1818C>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AAAACGAGGAGGCGAAGCTTG	0.458000													9	105					5.3912e-06	2.13071e-05	0.00074312	1	0
MRC2	9902	broad.mit.edu	37	17	60742070	60742070	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:60742070C>T	uc002jad.2	+	2	682	c.280C>T	c.(280-282)CTG>TTG	p.L94L	MRC2_uc002jac.2_Silent_p.L94L	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	94	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CATGCAGTGCCTGGGCACAGG	0.617000													6	70					0	0	0.00198382	0	0
MRC2	9902	broad.mit.edu	37	17	60766270	60766270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:60766270G>A	uc002jad.2	+	23	3685	c.3283G>A	c.(3283-3285)GAT>AAT	p.D1095N	MRC2_uc002jae.2_Missense_Mutation_p.D166N|MRC2_uc002jaf.2_Silent_p.T40T	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1095	Extracellular (Potential).|C-type lectin 6.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CCGCTGGGACGATCGGAGCTG	0.672000													6	47					0	0	0.000157383	0	0
PLEKHM1P	440456	broad.mit.edu	37	17	62796513	62796513	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:62796513T>A	uc002jew.3	-	6	1438	c.527A>T	c.(526-528)TAT>TTT	p.Y176F	PLEKHM1P_uc002jev.3_RNA|PLEKHM1P_uc010wqe.1_Missense_Mutation_p.Y176F	NR_024386				RecName: Full=Putative pleckstrin homology domain-containing family M member 1P;												0						AGAAAATATATAGGGCATCCA	0.542000													9	62					0	0	0.000673444	0	0
APOH	350	broad.mit.edu	37	17	64225487	64225487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:64225487G>A	uc002jfn.3	-	1	70	c.11C>T	c.(10-12)CCA>CTA	p.P4L		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	4					blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			GATGAGCACTGGAGAAATCAT	0.383000													5	22					0	0	0.00116845	0	0
BPTF	2186	broad.mit.edu	37	17	65899939	65899939	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:65899939A>G	uc002jgf.2	+	8	2639	c.2578A>G	c.(2578-2580)AAG>GAG	p.K860E	BPTF_uc002jge.2_Missense_Mutation_p.K986E|BPTF_uc010wqm.1_Missense_Mutation_p.K923E	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	986	Potential.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			aagagaagaaaaggagaaagt	0.239000													10	37					0	0	0.000442599	0	0
CD300A	11314	broad.mit.edu	37	17	72469802	72469802	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:72469802C>T	uc002jkv.2	+	2	489	c.168C>T	c.(166-168)TTC>TTT	p.F56F	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	56	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						CACAGATTTTCCTATGTGACA	0.557000													6	72					0	0	0.00198382	0	0
KIAA0195	9772	broad.mit.edu	37	17	73484131	73484131	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:73484131C>T	uc002jnz.3	+	6	803	c.528C>T	c.(526-528)AAC>AAT	p.N176N	KIAA0195_uc010wsa.1_Silent_p.N186N|KIAA0195_uc010wsb.1_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	176					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			ACCTGGTCAACCTGCCAGTCA	0.567000													9	45					0	0	0.000673444	0	0
RHBDF2	79651	broad.mit.edu	37	17	74469098	74469098	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:74469098G>A	uc002jrq.1	-	17	2279	c.1986C>T	c.(1984-1986)TTC>TTT	p.F662F	RHBDF2_uc002jrp.1_Silent_p.F633F|RHBDF2_uc002jrr.1_Silent_p.F514F	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	662	Helical; (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						CAGCATGTAGGAAGAGAGACA	0.632000													7	61					0	0	0.000442599	0	0
ANKRD12	23253	broad.mit.edu	37	18	9256464	9256464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr18:9256464G>A	uc002knv.2	+	9	3456	c.3199G>A	c.(3199-3201)GAA>AAA	p.E1067K	ANKRD12_uc002knw.2_Missense_Mutation_p.E1044K|ANKRD12_uc002knx.2_Missense_Mutation_p.E1044K|ANKRD12_uc010dkx.1_Missense_Mutation_p.E774K	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1067						nucleus				ovary(2)|central_nervous_system(1)	3						CCGACCTAAAGAAAAGAGGTT	0.323000													17	160					0	0	0.000566183	0	0
TTC39C	125488	broad.mit.edu	37	18	21649138	21649138	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr18:21649138C>T	uc002kuw.2	+	4	815	c.363C>T	c.(361-363)TCC>TCT	p.S121S	TTC39C_uc002kuu.2_Silent_p.S60S	NM_001135993	NP_001129465	Q8N584	TT39C_HUMAN	tetratricopeptide repeat domain 39C isoform 1	121							binding			ovary(1)	1						TCCGAAAATCCGCCCCCTCTA	0.433000													8	78					0	0	0.000157383	0	0
DSG1	1828	broad.mit.edu	37	18	28934521	28934521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr18:28934521G>A	uc002kwp.2	+	15	2574	c.2362G>A	c.(2362-2364)GAA>AAA	p.E788K	DSG1_uc010xbp.1_Missense_Mutation_p.E147K	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	788	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			CCTTCCTCAGGAAACAGAGCC	0.488000													8	98					0	0	0.000157383	0	0
ASXL3	80816	broad.mit.edu	37	18	31323893	31323893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr18:31323893C>T	uc010dmg.1	+	12	4136	c.4081C>T	c.(4081-4083)CCC>TCC	p.P1361S	ASXL3_uc002kxq.2_Missense_Mutation_p.P1068S	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1361					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TGTCTTGATTCCCCCAATGGG	0.488000											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	130					0	0	0.00152264	0	0
SLC39A6	25800	broad.mit.edu	37	18	33706343	33706343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr18:33706343G>A	uc010dmy.2	-	2	918	c.628C>T	c.(628-630)CCT>TCT	p.P210S	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	210	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						AGTTTTCCAGGTCTTGGAGTC	0.478000													18	143					0	0	0.000566183	0	0
C18orf25	147339	broad.mit.edu	37	18	43842988	43842988	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr18:43842988G>A	uc002lbw.2	+	6	1501	c.1122G>A	c.(1120-1122)TGG>TGA	p.W374*	C18orf25_uc002lbx.2_Nonsense_Mutation_p.W313*	NM_145055	NP_659492	Q96B23	CR025_HUMAN	ARKadia-like 1 isoform a	373										central_nervous_system(2)	2						CACAGTCATGGACTGCTGTGA	0.502000													9	58					0	0	0.000274275	0	0
ATP9B	374868	broad.mit.edu	37	18	77063667	77063667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr18:77063667C>T	uc002lmx.2	+	14	1489	c.1475C>T	c.(1474-1476)GCC>GTC	p.A492V	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Missense_Mutation_p.A492V|ATP9B_uc002lmz.1_Missense_Mutation_p.A186V	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	492	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		TCCTATGGCGCCGACACGATG	0.542000													11	70					0	0	0.00244969	0	0
MUC16	94025	broad.mit.edu	37	19	9000475	9000475	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:9000475C>T	uc002mkp.2	-	54	40713	c.40509G>A	c.(40507-40509)AAG>AAA	p.K13503K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.K320K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13505	SEA 10.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTGTTAAACTTTCTAGAGC	0.507000													15	63					0	0	0.000566183	0	0
MUC16	94025	broad.mit.edu	37	19	9090729	9090729	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:9090729C>T	uc002mkp.2	-	1	1290	c.1086G>A	c.(1084-1086)GAG>GAA	p.E362E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	362	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAAGGATAGTCTCTGCTGTCT	0.488000													8	28					0	0	0.000157383	0	0
ICAM3	3385	broad.mit.edu	37	19	10449497	10449497	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:10449497G>A	uc002mob.2	-	2	259	c.204C>T	c.(202-204)TCC>TCT	p.S68S	ICAM3_uc010dxd.1_5'UTR|ICAM3_uc010xlf.1_5'UTR	NM_002162	NP_002153	P32942	ICAM3_HUMAN	intercellular adhesion molecule 3 precursor	68	Extracellular (Potential).|Ig-like C2-type 1.				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;6.13e-09)|Epithelial(33;9.69e-06)|all cancers(31;2.05e-05)			CCTTTGATAGGGACGTCTCCA	0.567000													14	50					0	0	0.000566183	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15586637	15586637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:15586637G>A	uc002nbf.3	-	2	977	c.844C>T	c.(844-846)CTT>TTT	p.L282F	PGLYRP2_uc002nbg.3_Missense_Mutation_p.L282F	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	282					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						TAGTCTCCAAGGATGACCCCA	0.622000													7	51					0	0	0.000274275	0	0
CYP4F2	8529	broad.mit.edu	37	19	16000503	16000503	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:16000503C>T	uc002nbs.1	-	7	698	c.648G>A	c.(646-648)GAG>GAA	p.E216E	CYP4F2_uc010xot.1_Silent_p.E67E|CYP4F2_uc010xou.1_Silent_p.E67E	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	216					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						CACTGGGTTTCCTGCAGGATA	0.468000													23	137					0	0	0.00127121	0	0
ZNF208	7757	broad.mit.edu	37	19	22156964	22156964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:22156964C>T	uc002nqp.2	-	4	1021	c.872G>A	c.(871-873)GGC>GAC	p.G291D	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AAAGGCTTTGCCACATTCTTC	0.388000													10	38					0	0	0.000673444	0	0
SLC7A9	11136	broad.mit.edu	37	19	33333197	33333197	+	Silent	SNP	G	A	A	rs34430815		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:33333197G>A	uc002ntv.3	-	11	1218	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I	SLC7A9_uc002ntt.3_RNA|SLC7A9_uc002ntu.3_Silent_p.I367I|SLC7A9_uc002ntw.3_Silent_p.I158I	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	367	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	TGTCACCAGGGATGATATAAA	0.393000													21	69					0	0	0.00278032	0	0
ZNF792	126375	broad.mit.edu	37	19	35449031	35449031	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:35449031G>A	uc002nxh.1	-	4	2115	c.1728C>T	c.(1726-1728)ACC>ACT	p.T576T		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	576	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			GCCGAATGAGGGTAGGCCTTT	0.502000													6	27					0	0	0.00116845	0	0
ZNF570	148268	broad.mit.edu	37	19	37975746	37975746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:37975746C>T	uc002ogk.1	+	5	1751	c.1222C>T	c.(1222-1224)CAT>TAT	p.H408Y	ZNF570_uc010efl.1_Missense_Mutation_p.H464Y|ZNF570_uc010xtr.1_Missense_Mutation_p.H205Y	NM_144694	NP_653295	Q96NI8	ZN570_HUMAN	zinc finger protein 570	408	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCAGAGAATTCATACTGGAGA	0.423000													15	72					0	0	0.000308642	0	0
MEGF8	1954	broad.mit.edu	37	19	42848171	42848171	+	Silent	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:42848171T>C	uc002otl.3	+	10	2369	c.1734T>C	c.(1732-1734)AGT>AGC	p.S578S	MEGF8_uc002otm.3_Silent_p.S119S	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	578	Extracellular (Potential).|PSI 1.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CGGAATGCAGTTGGTGCCAAG	0.627000													5	44					0	0	0.00116845	0	0
MEGF8	1954	broad.mit.edu	37	19	42880568	42880568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:42880568C>T	uc002otl.3	+	41	8613	c.7978C>T	c.(7978-7980)CGC>TGC	p.R2660C	MEGF8_uc002otm.3_Missense_Mutation_p.R2268C|MEGF8_uc002otn.3_Missense_Mutation_p.R321C	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2727	Cytoplasmic (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CGCCTTCCGCCGCTCTGAGCC	0.736000													11	35					0	0	0.00136819	0	0
ZNF180	7733	broad.mit.edu	37	19	44982298	44982298	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:44982298C>A	uc002ozf.3	-	5	682	c.400G>T	c.(400-402)GCT>TCT	p.A134S	ZNF180_uc002ozh.3_5'UTR|ZNF180_uc002ozi.3_Missense_Mutation_p.A107S|ZNF180_uc002ozg.3_Missense_Mutation_p.A133S|ZNF180_uc010ejm.2_Missense_Mutation_p.A109S	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	134	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				ACTCCATTAGCTGGTTCTTCA	0.373000													10	79					2.17888e-05	8.59557e-05	0.000442599	1	0
IGFL2	147920	broad.mit.edu	37	19	46664099	46664099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:46664099C>T	uc010xxv.1	+	3	338	c.302C>T	c.(301-303)TCC>TTC	p.S101F	IGFL2_uc002peb.2_Missense_Mutation_p.S112F	NM_001135113	NP_001128585	Q6UWQ7	IGFL2_HUMAN	IGF-like family member 2 isoform b	101						extracellular region	protein binding				0		Ovarian(192;0.0908)|all_neural(266;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(486;0.031)|Epithelial(262;0.247)		GGTGTGAATTCCCAGTGCCAC	0.562000													8	73					0	0	0.000157383	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49348650	49348650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:49348650G>A	uc002pkx.2	-	16	2271	c.1720C>T	c.(1720-1722)CCT>TCT	p.P574S	PLEKHA4_uc002pkw.1_Missense_Mutation_p.P89S|PLEKHA4_uc010eml.2_Missense_Mutation_p.P549S	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	574						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		TGTGGGGAAGGGAGGTGGCGA	0.572000													6	75					0	0	0.00198382	0	0
NKG7	4818	broad.mit.edu	37	19	51875550	51875550	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:51875550C>G	uc002pwj.2	-	2	340	c.169G>C	c.(169-171)GTG>CTG	p.V57L	NKG7_uc002pwk.2_Intron	NM_005601	NP_005592	Q16617	NKG7_HUMAN	natural killer cell group 7 sequence	57						integral to plasma membrane				central_nervous_system(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000211)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GTCTGCGTCACGTGGATGTAG	0.597000													27	100					0	0	0.000878237	0	0
LILRA6	79168	broad.mit.edu	37	19	54745472	54745472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:54745472G>A	uc002qeu.1	-	4	762	c.638C>T	c.(637-639)CCC>CTC	p.P213L	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Missense_Mutation_p.P213L|LILRA6_uc002qek.1_Missense_Mutation_p.P213L|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Missense_Mutation_p.P213L|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_Intron|LILRB3_uc002qeo.1_Missense_Mutation_p.P213L|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Missense_Mutation_p.P213L|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Missense_Mutation_p.P213L|LILRA6_uc010yep.1_Missense_Mutation_p.P213L|LILRA6_uc010yeq.1_Missense_Mutation_p.P213L|LILRA6_uc002qet.3_Intron|LILRA6_uc002qev.1_Missense_Mutation_p.P74L	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	213	Extracellular (Potential).					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AATCTCCAGGGGGTCACTGGG	0.592000													11	92					0	0	0.000566183	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55247447	55247447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:55247447G>A	uc002qgu.1	+	8	1135	c.1117G>A	c.(1117-1119)GAA>AAA	p.E373K	KIR2DL3_uc002qgv.2_Intron|KIR2DL3_uc002qgx.2_5'Flank|KIR2DL3_uc002qgy.2_5'Flank|KIR2DL3_uc010erw.1_5'Flank	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	373	Cytoplasmic (Potential).		E -> D (in allele KIR3DL3*027, allele KIR3DL3*029 and allele KIR3DL3*031).			integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		GGACTCTGATGAACAAGACCC	0.537000													18	135					0	0	0.00178596	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55354350	55354350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:55354350C>T	uc002qhm.1	+	6	738	c.692C>T	c.(691-693)CCC>CTC	p.P231L	KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Intron|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	231	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TGGCCTTCACCCACTGAACCA	0.493000													25	173					0	0	0.00283554	0	0
PEG3	5178	broad.mit.edu	37	19	57326051	57326051	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:57326051C>T	uc002qnu.2	-	7	4110	c.3759G>A	c.(3757-3759)CTG>CTA	p.L1253L	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.L1224L|PEG3_uc002qnv.2_Silent_p.L1253L|PEG3_uc002qnw.2_Silent_p.L1129L|PEG3_uc002qnx.2_Silent_p.L1127L|PEG3_uc010etr.2_Silent_p.L1253L	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1253					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGCTCTGCTCCAGTAAATCAT	0.478000													6	52					0	0	0.00198382	0	0
USP29	57663	broad.mit.edu	37	19	57641091	57641091	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:57641091T>A	uc002qny.2	+	4	1404	c.1048T>A	c.(1048-1050)TTA>ATA	p.L350I		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	350					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CAAGAGAGAATTACTTGGGAA	0.383000													15	91					0	0	0.000308642	0	0
ZIM3	114026	broad.mit.edu	37	19	57646378	57646378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr19:57646378C>T	uc002qnz.1	-	5	1713	c.1327G>A	c.(1327-1329)GGA>AGA	p.G443R		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	443					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGTTTTTGTCCAGTATGGGTT	0.418000													21	172					0	0	0.00229938	0	0
APOB	338	broad.mit.edu	37	2	21230873	21230873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:21230873G>A	uc002red.2	-	26	8995	c.8867C>T	c.(8866-8868)TCC>TTC	p.S2956F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2956					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGTCCAAAGGAAGTGAGGGG	0.408000													108	474					0	0	0.000781405	0	0
HADHB	3032	broad.mit.edu	37	2	26507820	26507820	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:26507820A>G	uc002rgz.2	+	14	1470	c.1219A>G	c.(1219-1221)ACC>GCC	p.T407A	HADHB_uc010ykv.1_Missense_Mutation_p.T385A|HADHB_uc010ykw.1_Missense_Mutation_p.T392A|HADHB_uc002rha.2_Missense_Mutation_p.T284A|HADHB_uc010ykx.1_Missense_Mutation_p.T333A	NM_000183	NP_000174	P55084	ECHB_HUMAN	mitochondrial trifunctional protein, beta	407					fatty acid beta-oxidation	mitochondrial nucleoid	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acyltransferase activity|enoyl-CoA hydratase activity|protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGTAGAAAAACCAAGGTGAG	0.338000													23	229					0	0	0.00278032	0	0
CAD	790	broad.mit.edu	37	2	27457439	27457439	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:27457439C>T	uc002rji.2	+	23	3834	c.3672C>T	c.(3670-3672)CCC>CCT	p.P1224P	CAD_uc010eyw.2_Silent_p.P1161P	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1224	CPSase B.|ATP-grasp 2.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GCTCCTTCCCCTTCGTTTCCA	0.498000													32	134					0	0	0.0024448	0	0
ALK	238	broad.mit.edu	37	2	29436869	29436869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:29436869C>T	uc002rmy.2	-	24	4631	c.3724G>A	c.(3724-3726)GAA>AAA	p.E1242K	ALK_uc010ymo.1_Missense_Mutation_p.E174K	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1242	Protein kinase.|Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	AAGTGGTTTTCCTCCAAATAC	0.572000			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				9	61					0	0	0.000442599	0	0
GALNT14	79623	broad.mit.edu	37	2	31135139	31135139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:31135139G>A	uc002rnr.2	-	14	2069	c.1450C>T	c.(1450-1452)CCT>TCT	p.P484S	GALNT14_uc002rnq.2_Missense_Mutation_p.P464S|GALNT14_uc002rns.2_Missense_Mutation_p.P489S|GALNT14_uc010ymr.1_Missense_Mutation_p.P449S	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	484	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GGGGCGCCAGGGAACAAGGTG	0.552000													19	71					0	0	0.00074312	0	0
EFEMP1	2202	broad.mit.edu	37	2	56097910	56097910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:56097910G>A	uc002rzh.2	-	10	1595	c.1265C>T	c.(1264-1266)ACC>ATC	p.T422I	EFEMP1_uc002rzi.2_Missense_Mutation_p.T422I|EFEMP1_uc002rzj.2_Missense_Mutation_p.T422I|EFEMP1_uc010ypc.1_Missense_Mutation_p.T284I	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	422	Mediates interaction with TIMP3.				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AGTATTGATGGTGTTGGCATA	0.418000													12	71					0	0	0.000978159	0	0
PAPOLG	64895	broad.mit.edu	37	2	61019409	61019409	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:61019409T>A	uc002sai.2	+	17	1895	c.1664T>A	c.(1663-1665)GTA>GAA	p.V555E	PAPOLG_uc002saj.2_Missense_Mutation_p.V244E|PAPOLG_uc002sak.2_Missense_Mutation_p.V90E|PAPOLG_uc010fch.2_Missense_Mutation_p.V244E	NM_022894	NP_075045	Q9BWT3	PAPOG_HUMAN	poly(A) polymerase gamma	555					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(2;0.0797)		LUSC - Lung squamous cell carcinoma(5;1.19e-07)|Lung(5;2.86e-06)|Epithelial(17;0.0768)			AGCCCTTCTGTAGGAGAAACA	0.388000													12	55					0	0	0.00244969	0	0
ZNF638	27332	broad.mit.edu	37	2	71576199	71576199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:71576199C>T	uc002shx.2	+	2	434	c.115C>T	c.(115-117)CTC>TTC	p.L39F	ZNF638_uc010fec.2_Missense_Mutation_p.L145F|ZNF638_uc010yqw.1_Intron|ZNF638_uc002shw.2_Missense_Mutation_p.L39F|ZNF638_uc002shy.2_Missense_Mutation_p.L39F|ZNF638_uc002shz.2_Missense_Mutation_p.L39F|ZNF638_uc002sia.2_Missense_Mutation_p.L39F|ZNF638_uc002sib.1_Missense_Mutation_p.L39F	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	39					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						ATCTATGGGTCTCCCAAGATT	0.498000													12	100					0	0	0.000978159	0	0
DYSF	8291	broad.mit.edu	37	2	71909735	71909735	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:71909735G>A	uc002sie.2	+	54	6508	c.6132G>A	c.(6130-6132)CGG>CGA	p.R2044R	DYSF_uc010feg.2_Silent_p.R2075R|DYSF_uc010feh.2_Silent_p.R2051R|DYSF_uc002sig.3_Silent_p.R2030R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.R2065R|DYSF_uc010fef.2_Silent_p.R2082R|DYSF_uc010fei.2_Silent_p.R2061R|DYSF_uc010fek.2_Silent_p.R2062R|DYSF_uc010fej.2_Silent_p.R2052R|DYSF_uc010fel.2_Silent_p.R2031R|DYSF_uc010feo.2_Silent_p.R2076R|DYSF_uc010fem.2_Silent_p.R2066R|DYSF_uc010fen.2_Silent_p.R2083R|DYSF_uc002sif.2_Silent_p.R2045R|DYSF_uc010yqy.1_Silent_p.R925R|DYSF_uc010yqz.1_Silent_p.R805R	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	2044	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGCGTTTCCGGTGGGCcatca	0.522000													17	59					0	0	0.000958276	0	0
WDR54	84058	broad.mit.edu	37	2	74650042	74650042	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:74650042T>C	uc002slb.2	+	3	328	c.268T>C	c.(268-270)TCA>CCA	p.S90P		NM_032118	NP_115494	Q9H977	WDR54_HUMAN	WD repeat domain 54	90											0						GGTACTCACCTCACATCGAGG	0.542000													6	53					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	2	90008044	90008044	+	RNA	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:90008044C>T	uc010fhm.2	+	9		c.1217C>T								Parts of antibodies, mostly variable regions.																		TCAGGGGGTCCCATCTCGGTT	0.473000													25	71					0	0	0.00106085	0	0
ZNF514	84874	broad.mit.edu	37	2	95815412	95815412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:95815412G>A	uc002sue.1	-	5	1192	c.818C>T	c.(817-819)TCG>TTG	p.S273L	ZNF514_uc002sud.1_Missense_Mutation_p.S346L	NM_032788	NP_116177	Q96K75	ZN514_HUMAN	zinc finger protein 514	273	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AACAAGAGACGAACTCTGGCT	0.418000													18	70					0	0	0.000566183	0	0
RNF149	284996	broad.mit.edu	37	2	101924848	101924848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:101924848G>A	uc002taz.1	-	1	305	c.203C>T	c.(202-204)TCG>TTG	p.S68L	RNF149_uc002tax.1_RNA	NM_173647	NP_775918	Q8NC42	RN149_HUMAN	ring finger protein 149 precursor	68	PA.					integral to membrane	ligase activity|zinc ion binding			ovary(1)|breast(1)	2						CTCCTTGGGCGAGCTGTCGCC	0.706000													6	39					0	0	0.00116845	0	0
RGPD4	285190	broad.mit.edu	37	2	108488418	108488418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:108488418G>A	uc010ywk.1	+	20	4040	c.3958G>A	c.(3958-3960)GAA>AAA	p.E1320K	RGPD4_uc002tdu.2_Missense_Mutation_p.E507K|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1320					intracellular transport		binding			skin(2)	2						TGGCACTGATGAAGAATCTGA	0.408000													47	171					0	0	0.000781405	0	0
ANAPC1	64682	broad.mit.edu	37	2	112582574	112582574	+	Silent	SNP	A	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:112582574A>C	uc002thi.2	-	24	3028	c.2781T>G	c.(2779-2781)GCT>GCG	p.A927A		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	927					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						CCAATCTTTCAGCTAGACTAG	0.373000													19	225					0	0	0.00278032	0	0
ANAPC1	64682	broad.mit.edu	37	2	112608458	112608458	+	Silent	SNP	T	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:112608458T>G	uc002thi.2	-	14	1792	c.1545A>C	c.(1543-1545)CCA>CCC	p.P515P		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	515					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						GAGAGGGAGCTGGCAGTCCAG	0.403000													10	56					0	0	0.00136819	0	0
IL1F5	26525	broad.mit.edu	37	2	113820103	113820103	+	Missense_Mutation	SNP	G	A	A	rs144420774		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:113820103G>A	uc002tis.2	+	5	450	c.317G>A	c.(316-318)GGG>GAG	p.G106E	IL1F5_uc002tit.2_Missense_Mutation_p.G106E	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	106						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						CGGGACATGGGGCTCACCTCC	0.607000													7	50					0	0	0.00198382	0	0
IL1RN	3557	broad.mit.edu	37	2	113885205	113885205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:113885205G>A	uc002tjb.2	+	1	68	c.4G>A	c.(4-6)GAA>AAA	p.E2K	IL1RN_uc002tix.1_Intron|IL1RN_uc002tiy.2_Intron|IL1RN_uc002tiz.2_Intron|IL1RN_uc002tja.2_Intron	NM_173842	NP_776214	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 1	2					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	TCACAGAATGGAAATCTGCAG	0.527000									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				8	25					0	0	0.000274275	0	0
ACTR3	10096	broad.mit.edu	37	2	114714970	114714970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:114714970G>A	uc002tkx.1	+	12	1515	c.1195G>A	c.(1195-1197)GAT>AAT	p.D399N	ACTR3_uc010yyc.1_Missense_Mutation_p.D337N|ACTR3_uc010yyd.1_Missense_Mutation_p.D348N	NM_005721	NP_005712	P61158	ARP3_HUMAN	ARP3 actin-related protein 3 homolog	399					cellular component movement|cilium morphogenesis	Arp2/3 protein complex	actin binding|ATP binding			skin(1)	1						CACCAAAAAGGATTATGAAGA	0.368000													5	90					0	0	0.00198382	0	0
MGAT5	4249	broad.mit.edu	37	2	135076307	135076307	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:135076307T>G	uc002ttv.1	+	4	715	c.570T>G	c.(568-570)AGT>AGG	p.S190R		NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	190	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		TTTACCTCAGTGAGGTGAGTA	0.453000													7	103					0	0	0.000157383	0	0
THSD7B	80731	broad.mit.edu	37	2	137814319	137814319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:137814319G>A	uc002tva.1	+	2	376	c.376G>A	c.(376-378)GAA>AAA	p.E126K	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.E16K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGTTGCAAATGAAATATGCGA	0.522000													12	135					0	0	0.000978159	0	0
THSD7B	80731	broad.mit.edu	37	2	138169379	138169379	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:138169379C>T	uc002tva.1	+	13	2803	c.2803C>T	c.(2803-2805)CGA>TGA	p.R935*	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Nonsense_Mutation_p.R825*	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGCGCTTTCGAGCAGTAGC	0.507000													8	68					0	0	0.000157383	0	0
LRP1B	53353	broad.mit.edu	37	2	141272283	141272283	+	Silent	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:141272283A>G	uc002tvj.1	-	51	9180	c.8208T>C	c.(8206-8208)CAT>CAC	p.H2736H		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2736	Extracellular (Potential).|LDL-receptor class A 16.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CACAAATCCAATGCTTAGAAA	0.368000										TSP Lung(27;0.18)			7	59					0	0	0.00198382	0	0
ABCB11	8647	broad.mit.edu	37	2	169780299	169780299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:169780299C>T	uc002ueo.1	-	28	3925	c.3799G>A	c.(3799-3801)GGT>AGT	p.G1267S	ABCB11_uc010zda.1_Missense_Mutation_p.G685S|ABCB11_uc010zdb.1_Missense_Mutation_p.G743S	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1267	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CAGGTCCGACCCTCTCTGGCT	0.527000													11	47					0	0	0.00185496	0	0
LRP2	4036	broad.mit.edu	37	2	169995190	169995190	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:169995190T>C	uc002ues.2	-	75	13628	c.13415A>G	c.(13414-13416)GAA>GGA	p.E4472G		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4472	Cytoplasmic (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATTCCCATTTTCAGAGGGCTT	0.413000													8	42					0	0	0.000157383	0	0
LRP2	4036	broad.mit.edu	37	2	170062962	170062962	+	Missense_Mutation	SNP	G	A	A	rs34893088		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:170062962G>A	uc002ues.2	-	39	7481	c.7268C>T	c.(7267-7269)TCT>TTT	p.S2423F		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2423	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATAGTCTAGAGACATGACAGT	0.418000													22	64					0	0	0.00229938	0	0
CHN1	1123	broad.mit.edu	37	2	175676295	175676295	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:175676295T>A	uc002uji.2	-	10	1438	c.908A>T	c.(907-909)TAC>TTC	p.Y303F	CHN1_uc010zeq.1_Missense_Mutation_p.Y277F|CHN1_uc002ujj.2_Missense_Mutation_p.Y78F|CHN1_uc002ujg.2_Missense_Mutation_p.Y178F	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	303	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			TGATACTCGGTATAGTCCTTC	0.348000			T	TAF15	extraskeletal myxoid chondrosarcoma								5	48					0	0	0.00116845	0	0
TTC30B	150737	broad.mit.edu	37	2	178416698	178416698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:178416698C>T	uc002uln.2	-	1	827	c.794G>A	c.(793-795)AGA>AAA	p.R265K	TTC30B_uc010zfc.1_Missense_Mutation_p.R37K	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	265					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			CTCATAGTTTCTCAGTTGGTA	0.512000													19	150					0	0	0.000958276	0	0
TTN	7273	broad.mit.edu	37	2	179424718	179424718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:179424718C>T	uc010zfg.1	-	275	78661	c.78437G>A	c.(78436-78438)GGA>GAA	p.G26146E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G19841E|TTN_uc010zfi.1_Missense_Mutation_p.G19774E|TTN_uc010zfj.1_Missense_Mutation_p.G19649E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27073							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTGTTAGTCCGCTTATTGT	0.413000													5	57					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179428070	179428070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:179428070C>T	uc010zfg.1	-	275	75309	c.75085G>A	c.(75085-75087)GAT>AAT	p.D25029N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D18724N|TTN_uc010zfi.1_Missense_Mutation_p.D18657N|TTN_uc010zfj.1_Missense_Mutation_p.D18532N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25956							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCGCCACCATCATAAATTGGC	0.498000													8	53					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179440104	179440104	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:179440104C>T	uc010zfg.1	-	275	63275	c.63051G>A	c.(63049-63051)GTG>GTA	p.V21017V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V14712V|TTN_uc010zfi.1_Silent_p.V14645V|TTN_uc010zfj.1_Silent_p.V14520V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21944							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTAACCCTTTCACGGTTGTGA	0.498000													7	65					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179477040	179477040	+	Missense_Mutation	SNP	C	T	T	rs148018042	by1000genomes	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:179477040C>T	uc010zfg.1	-	215	42732	c.42508G>A	c.(42508-42510)GAA>AAA	p.E14170K	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E7865K|TTN_uc010zfi.1_Missense_Mutation_p.E7798K|TTN_uc010zfj.1_Missense_Mutation_p.E7673K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15097							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTCAATTTCGGTGTAGTCG	0.453000													8	53					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179477551	179477551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:179477551C>T	uc010zfg.1	-	214	42417	c.42193G>A	c.(42193-42195)GAA>AAA	p.E14065K	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E7760K|TTN_uc010zfi.1_Missense_Mutation_p.E7693K|TTN_uc010zfj.1_Missense_Mutation_p.E7568K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14992							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTTCACTTTCCCCAGCCTTA	0.502000													4	21					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179560875	179560875	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:179560875C>T	uc010zfg.1	-	111	27416	c.27192G>A	c.(27190-27192)AAG>AAA	p.K9064K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.K5725K|TTN_uc010fre.1_Silent_p.K175K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9991							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTCTTCTCCTTGTGGACTG	0.353000													4	8					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179584291	179584291	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:179584291G>A	uc010zfg.1	-	79	20420	c.20196C>T	c.(20194-20196)GTC>GTT	p.V6732V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V3393V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7659							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGAAACATGGACGGATACAG	0.398000													52	203					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179597057	179597057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:179597057C>T	uc010zfg.1	-	54	13131	c.12907G>A	c.(12907-12909)GAA>AAA	p.E4303K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E964K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5230							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTAACTTTTCAACAAATGTG	0.393000													28	136					0	0	0.000692331	0	0
DNAH7	56171	broad.mit.edu	37	2	196602772	196602772	+	Missense_Mutation	SNP	C	T	T	rs62203618		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:196602772C>T	uc002utj.3	-	65	12049	c.11948G>A	c.(11947-11949)CGG>CAG	p.R3983Q	DNAH7_uc002uti.3_Missense_Mutation_p.R466Q	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3983					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TACTCCTCTCCGCTCACTTGT	0.463000													7	61					0	0	0.00198382	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202466597	202466597	+	Silent	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:202466597T>C	uc002uye.2	-	4	429	c.381A>G	c.(379-381)CAA>CAG	p.Q127Q	ALS2CR11_uc002uyf.2_Silent_p.Q127Q|ALS2CR11_uc010fti.2_Silent_p.Q127Q	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	127										large_intestine(1)|ovary(1)|skin(1)	3						TAGCATAATGTTGTAAACTGA	0.269000													6	51					0	0	0.00198382	0	0
FZD5	7855	broad.mit.edu	37	2	208632349	208632349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:208632349G>A	uc002vcj.2	-	2	1525	c.1115C>T	c.(1114-1116)TCC>TTC	p.S372F		NM_003468	NP_003459	Q13467	FZD5_HUMAN	frizzled 5 precursor	372	Helical; Name=4; (Potential).				angiogenesis|anterior/posterior axis specification, embryo|axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to molecule of bacterial origin|embryonic camera-type eye development|gonad development|labyrinthine layer blood vessel development|positive regulation of interferon-gamma production|positive regulation of transcription from RNA polymerase II promoter|post-embryonic camera-type eye development|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell projection|cell surface|Golgi membrane|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|protein kinase binding|Wnt-protein binding			ovary(2)|lung(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.13)|Lung(261;0.134)		TGCCGTGATGGACTTGACGCT	0.667000													6	9					0	0	0.00198382	0	0
ABCA12	26154	broad.mit.edu	37	2	215839571	215839571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:215839571G>A	uc002vew.2	-	35	5619	c.5399C>T	c.(5398-5400)ACG>ATG	p.T1800M	ABCA12_uc002vev.2_Missense_Mutation_p.T1482M|ABCA12_uc010zjn.1_Missense_Mutation_p.T727M	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1800					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AAGTGCTTCCGTGCTCGGGTG	0.378000													16	115					0	0	0.000422831	0	0
DNAJB2	3300	broad.mit.edu	37	2	220146740	220146740	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:220146740C>T	uc002vkx.1	+	5	546	c.309C>T	c.(307-309)TTC>TTT	p.F103F	DNAJB2_uc010zla.1_Silent_p.F103F|DNAJB2_uc002vkw.1_Silent_p.F103F|DNAJB2_uc002vky.2_5'Flank|DNAJB2_uc010zlb.1_5'Flank	NM_006736	NP_006727	P25686	DNJB2_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 2	103					ER-associated protein catabolic process|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of inclusion body assembly|negative regulation of protein deubiquitination|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein folding|response to unfolded protein	inclusion body	heat shock protein binding|Hsp70 protein binding|polyubiquitin binding|proteasome binding|protein binding|unfolded protein binding				0		Renal(207;0.0474)		Epithelial(149;1.97e-06)|all cancers(144;0.00028)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGAGGTCTTCCGGGAATTCT	0.592000													16	54					0	0	0.000566183	0	0
C2orf57	165100	broad.mit.edu	37	2	232458344	232458344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:232458344G>A	uc002vrz.2	+	1	733	c.682G>A	c.(682-684)GGA>AGA	p.G228R		NM_152614	NP_689827	Q53QW1	CB057_HUMAN	hypothetical protein LOC165100	228										ovary(1)	1		Renal(207;0.025)|all_hematologic(139;0.0735)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;1.33e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)		GGACAGCTTAGGAGACCTGCA	0.612000													29	120					0	0	0.00178596	0	0
OR6B2	389090	broad.mit.edu	37	2	240969565	240969565	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:240969565G>A	uc002vyr.2	-	2	328	c.282C>T	c.(280-282)TTC>TTT	p.F94F	OR6B2_uc010zoc.1_Silent_p.F94F	NM_001005853	NP_001005853	Q6IFH4	OR6B2_HUMAN	olfactory receptor, family 6, subfamily B,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.4e-29)|all cancers(36;2.08e-27)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TGCACCCGACGAAAGAGATGC	0.572000													5	37					0	0	0.000602214	0	0
PRR21	643905	broad.mit.edu	37	2	240981461	240981461	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr2:240981461G>A	uc010zod.1	-	1	939	c.939C>T	c.(937-939)TCC>TCT	p.S313S		NM_001080835	NP_001074304	Q8WXC7	PRR21_HUMAN	proline rich 21	313	Pro-rich.									ovary(1)|skin(1)	2						GAAGAGGCATGGACGAAGGGC	0.607000													21	102					0	0	0.00047179	0	0
TMC2	117532	broad.mit.edu	37	20	2552825	2552825	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:2552825G>A	uc002wgf.1	+	5	570	c.555G>A	c.(553-555)AGG>AGA	p.R185R	TMC2_uc002wgg.1_Silent_p.R169R|TMC2_uc010zpw.1_Silent_p.R17R|TMC2_uc010zpx.1_Silent_p.R16R	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	185	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						TTCTAAGCAGGGAGGCCCAGG	0.423000													8	46					0	0	0.000274275	0	0
TMC2	117532	broad.mit.edu	37	20	2582822	2582822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:2582822C>T	uc002wgf.1	+	11	1303	c.1288C>T	c.(1288-1290)CGT>TGT	p.R430C	TMC2_uc002wgg.1_Missense_Mutation_p.R414C|TMC2_uc010zpw.1_Missense_Mutation_p.R262C|TMC2_uc010zpx.1_Missense_Mutation_p.R261C	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	430	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						AAGATTTCTTCGTGTCCTGGC	0.388000													7	54					0	0	0.00198382	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3675518	3675518	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:3675518C>T	uc002wja.2	-	11	2736	c.2736G>A	c.(2734-2736)GTG>GTA	p.V912V	SIGLEC1_uc002wjb.1_5'Flank|SIGLEC1_uc002wiz.3_Silent_p.V912V	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	912	Ig-like C2-type 9.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						AGCTCAGGACCACAGCCTGGC	0.632000													5	32					0	0	0.00116845	0	0
RASSF2	9770	broad.mit.edu	37	20	4766926	4766926	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:4766926G>A	uc002wld.2	-	10	916	c.862C>T	c.(862-864)CAG>TAG	p.Q288*	RASSF2_uc002wlc.2_RNA|RASSF2_uc002wle.2_RNA|RASSF2_uc002wlf.2_Nonsense_Mutation_p.Q288*|RASSF2_uc010gbh.2_Intron	NM_170774	NP_739580	P50749	RASF2_HUMAN	Ras association domain family 2	288	SARAH.				cell cycle|signal transduction	nucleus	protein binding	p.Q288E(1)		ovary(3)|lung(2)|large_intestine(1)	6						TGGAGCTTCTGAATGAAGCTT	0.498000													36	251					0	0	0.000692331	0	0
PROKR2	128674	broad.mit.edu	37	20	5283226	5283226	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:5283226C>T	uc010zqw.1	-	2	615	c.615G>A	c.(613-615)AAG>AAA	p.K205K	PROKR2_uc010zqx.1_Silent_p.K205K|PROKR2_uc010zqy.1_Silent_p.K205K	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	205	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CACAGAAGATCTTCTCCTGGC	0.512000										HNSCC(71;0.22)			18	116					0	0	0.000958276	0	0
C20orf79	140856	broad.mit.edu	37	20	18794566	18794566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:18794566C>T	uc002wrk.2	+	1	197	c.107C>T	c.(106-108)CCT>CTT	p.P36L	uc002wrj.1_Intron	NM_178483	NP_848578	Q9UJQ7	CT079_HUMAN	hypothetical protein LOC140856	36							sterol binding			skin(3)	3						ATGCCACATCCTCTAGAGCTG	0.502000													9	50					0	0	0.000673444	0	0
C20orf26	26074	broad.mit.edu	37	20	20144804	20144804	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:20144804C>T	uc002wru.2	+	11	1213	c.1137C>T	c.(1135-1137)CCC>CCT	p.P379P	C20orf26_uc010gcw.1_Silent_p.P333P|C20orf26_uc010zse.1_Silent_p.P379P|C20orf26_uc010zsf.1_Silent_p.P379P	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	379										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		ACTTCCGCCCCATCTACAGGG	0.502000													10	89					0	0	0.000673444	0	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	Missense_Mutation	SNP	G	C	C	rs145412486	by1000genomes	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:29628236G>C	uc010ztl.1	+	3	180	c.148G>C	c.(148-150)GCT>CCT	p.A50P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A2P					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGGAAAATGGCTTTGTTGGC	0.333000													4	103					0	0	0.00198382	0	0
RBM12	10137	broad.mit.edu	37	20	34242834	34242834	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:34242834G>A	uc002xdq.2	-	3	643	c.411C>T	c.(409-411)ACC>ACT	p.T137T	CPNE1_uc010zvj.1_5'Flank|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Silent_p.T137T|RBM12_uc002xds.2_Silent_p.T137T	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	137						nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GAACAGAAGTGGTGGCAGTAA	0.473000											OREG0004046	type=REGULATORY REGION|Gene=RBM12|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	21	119					0	0	0.000720815	0	0
TGM2	7052	broad.mit.edu	37	20	36784484	36784484	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:36784484G>A	uc002xhr.2	-	3	298	c.198C>T	c.(196-198)GCC>GCT	p.A66A	TGM2_uc010zvx.1_Intron|TGM2_uc010zvy.1_Silent_p.A6A|TGM2_uc002xhs.1_Intron|TGM2_uc002xht.2_Silent_p.A66A|TGM2_uc002xhu.3_Silent_p.A66A	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	66					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	CCTGGCTAGGGGCTGGGCCTG	0.438000													5	29					0	0	0.00198382	0	0
FAM83D	81610	broad.mit.edu	37	20	37580865	37580865	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:37580865T>C	uc002xjg.2	+	4	1591	c.1550T>C	c.(1549-1551)GTG>GCG	p.V517A		NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	487	Ser-rich.				cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				CAAGGCTCTGTGGCAAGCTCC	0.517000													11	55					0	0	0.000673444	0	0
PCK1	5105	broad.mit.edu	37	20	56140627	56140627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr20:56140627G>A	uc002xyn.3	+	10	1799	c.1636G>A	c.(1636-1638)GGA>AGA	p.G546R	PCK1_uc010zzm.1_Missense_Mutation_p.G229R	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	546					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CCGGATCGATGGAAAAGCCAG	0.547000													6	56					0	0	0.00116845	0	0
N6AMT1	29104	broad.mit.edu	37	21	30255315	30255315	+	Silent	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr21:30255315A>G	uc002ymo.1	-	2	239	c.213T>C	c.(211-213)GCT>GCC	p.A71A	N6AMT1_uc002ymp.1_Silent_p.A71A|N6AMT1_uc002ymq.1_RNA	NM_013240	NP_037372	Q9Y5N5	HEMK2_HUMAN	N-6 adenine-specific DNA methyltransferase 1	71					positive regulation of cell growth	protein complex	nucleic acid binding|protein binding|protein methyltransferase activity				0						ACATGTACAAAGCCTGAGGGC	0.343000													8	49					0	0	0.000274275	0	0
FAM165B	54065	broad.mit.edu	37	21	35757832	35757832	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr21:35757832C>T	uc002ytu.3	+	3	264	c.69C>T	c.(67-69)CTC>CTT	p.L23L	FAM165B_uc002ytv.2_Intron|FAM165B_uc002ytw.2_RNA	NM_058182	NP_478062	P58511	F165B_HUMAN	chromosome 21 open reading frame 51	23	Helical; (Potential).					integral to membrane					0						CATTAATTCTCTGCCTGACAT	0.418000													50	198					0	0	0.000781405	0	0
DSCAM	1826	broad.mit.edu	37	21	41414516	41414516	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr21:41414516A>G	uc002yyq.1	-	32	5920	c.5468T>C	c.(5467-5469)ATG>ACG	p.M1823T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1823	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTGCTCTTCCATCTTGGCGTG	0.537000													10	83					0	0	0.000978159	0	0
DSCAM	1826	broad.mit.edu	37	21	41711182	41711182	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr21:41711182C>T	uc002yyq.1	-	7	1823	c.1371G>A	c.(1369-1371)CAG>CAA	p.Q457Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	457	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ACGTGATCATCTGGCTGATGC	0.597000													13	35					0	0	0.00185496	0	0
DSCAM	1826	broad.mit.edu	37	21	41741076	41741076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr21:41741076C>T	uc002yyq.1	-	4	1057	c.605G>A	c.(604-606)CGA>CAA	p.R202Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	202	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCCGGTGTATCGATGCCGCGT	0.433000													14	73					0	0	0.00244969	0	0
LOC96610	96610	broad.mit.edu	37	22	22664240	22664240	+	RNA	SNP	T	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:22664240T>G	uc011aim.1	+	30		c.2097T>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GATAAGCTGCTGATGAGCGGT	0.532000													4	87					0	0	0.00024832	0	0
MYO18B	84700	broad.mit.edu	37	22	26422411	26422411	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:26422411G>C	uc003abz.1	+	43	6721	c.6471G>C	c.(6469-6471)AGG>AGC	p.R2157S	MYO18B_uc003aca.1_Missense_Mutation_p.R2038S|MYO18B_uc010guy.1_Missense_Mutation_p.R2039S|MYO18B_uc010guz.1_Missense_Mutation_p.R2037S|MYO18B_uc011aka.1_Missense_Mutation_p.R1311S|MYO18B_uc011akb.1_Missense_Mutation_p.R1670S|MYO18B_uc010gva.1_Missense_Mutation_p.R140S|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2157						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CTTGGCACAGGATAAACGAAG	0.488000													37	179					0	0	0.00170553	0	0
MYO18B	84700	broad.mit.edu	37	22	26422903	26422903	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:26422903G>A	uc003abz.1	+	43	7213	c.6963G>A	c.(6961-6963)TTG>TTA	p.L2321L	MYO18B_uc003aca.1_Silent_p.L2202L|MYO18B_uc010guy.1_Silent_p.L2203L|MYO18B_uc010guz.1_Silent_p.L2201L|MYO18B_uc011aka.1_Silent_p.L1475L|MYO18B_uc011akb.1_Silent_p.L1834L|MYO18B_uc010gva.1_Silent_p.L304L|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2321						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GTGGTCTCTTGAGGTCCACCA	0.582000													13	44					0	0	0.00244969	0	0
MYO18B	84700	broad.mit.edu	37	22	26423606	26423606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:26423606G>A	uc003abz.1	+	43	7916	c.7666G>A	c.(7666-7668)GAT>AAT	p.D2556N	MYO18B_uc003aca.1_Missense_Mutation_p.D2437N|MYO18B_uc010guy.1_Missense_Mutation_p.D2438N|MYO18B_uc010guz.1_Missense_Mutation_p.D2436N|MYO18B_uc011aka.1_Missense_Mutation_p.D1710N|MYO18B_uc011akb.1_Missense_Mutation_p.D2069N|MYO18B_uc010gva.1_Missense_Mutation_p.D539N|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2556						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GAAAGACGACGATGTTGCGAG	0.552000													4	18					0	0	0.000602214	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688708	26688708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:26688708G>A	uc003acb.2	+	2	587	c.431G>A	c.(430-432)AGG>AAG	p.R144K	SEZ6L_uc003acc.2_Missense_Mutation_p.R144K|SEZ6L_uc011akc.1_Missense_Mutation_p.R144K|SEZ6L_uc003acd.2_Missense_Mutation_p.R144K|SEZ6L_uc011akd.1_Missense_Mutation_p.R144K|SEZ6L_uc003ace.2_Missense_Mutation_p.R144K|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	144	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						ACTGTCCAAAGGGCAGGGTCC	0.667000													5	37					0	0	0.00198382	0	0
CACNG2	10369	broad.mit.edu	37	22	36960604	36960604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:36960604C>T	uc003aps.1	-	4	1048	c.766G>A	c.(766-768)GGC>AGC	p.G256S		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	256					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						CCCTTGATGCCCACGGGGGAG	0.682000													28	105					0	0	0.00178596	0	0
DDX17	10521	broad.mit.edu	37	22	38890739	38890739	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:38890739G>A	uc003avy.3	-	8	1213	c.1110C>T	c.(1108-1110)TTC>TTT	p.F370F	DDX17_uc003avx.3_Silent_p.F370F|DDX17_uc011anu.1_Silent_p.F283F	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	291	Helicase ATP-binding.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					AATCACGAAGGAAATCCTCTG	0.463000													30	197					0	0	0.00178596	0	0
DMC1	11144	broad.mit.edu	37	22	38948707	38948707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:38948707G>A	uc003avz.1	-	7	560	c.385C>T	c.(385-387)CGT>TGT	p.R129C	DMC1_uc011anv.1_Missense_Mutation_p.R129C|DMC1_uc003awa.1_Missense_Mutation_p.R129C	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	129	ATP (Potential).				reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					TTTCCAGTACGAAATTCTGTG	0.274000								Homologous_recombination					17	128					0	0	0.00074312	0	0
MGAT3	4248	broad.mit.edu	37	22	39883496	39883496	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:39883496C>T	uc003axv.3	+	2	383	c.144C>T	c.(142-144)AGC>AGT	p.S48S	MGAT3_uc010gxy.2_Silent_p.S48S	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	48	Lumenal (Potential).|Pro-rich.				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					TGGTGTCCAGCTTTTTCTGGA	0.637000													38	207					0	0	0.00195071	0	0
CACNA1I	8911	broad.mit.edu	37	22	40075294	40075294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:40075294G>A	uc003ayc.2	+	32	5238	c.5238G>A	c.(5236-5238)ATG>ATA	p.M1746I	CACNA1I_uc003ayd.2_Missense_Mutation_p.M1711I|CACNA1I_uc003aye.2_Missense_Mutation_p.M1661I|CACNA1I_uc003ayf.2_Missense_Mutation_p.M1626I	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1746	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACGCCGAGATGGATGCCGAGC	0.537000													6	6					0	0	0.00116845	0	0
FAM118A	55007	broad.mit.edu	37	22	45719160	45719160	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:45719160C>G	uc003bfz.3	+	4	768	c.152C>G	c.(151-153)TCG>TGG	p.S51W	FAM118A_uc003bga.3_Missense_Mutation_p.S51W	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	51						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		GCCCTTTGCTCGTGGAGAAGC	0.607000													10	52					0	0	0.000978159	0	0
ACR	49	broad.mit.edu	37	22	51183135	51183135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:51183135G>A	uc003bnh.3	+	5	778	c.766G>A	c.(766-768)GTC>ATC	p.V256I		NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	256	Peptidase S1.				acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		CGCCTATGTGGTCGTGGGAAT	0.597000													5	28					0	0	0.000602214	0	0
GRM7	2917	broad.mit.edu	37	3	7721864	7721864	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:7721864G>A	uc003bqm.2	+	9	2854	c.2580G>A	c.(2578-2580)AAG>AAA	p.K860K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.K860K|GRM7_uc003bql.2_Silent_p.K860K|GRM7_uc003bqn.1_Silent_p.K443K	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	860	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AGAAACGGAAGCGAAGCTTCA	0.522000													15	64					0	0	0.000422831	0	0
SETD5	55209	broad.mit.edu	37	3	9483415	9483415	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:9483415T>C	uc003brt.2	+	9	1384	c.949T>C	c.(949-951)TTC>CTC	p.F317L	SETD5_uc003brs.1_Missense_Mutation_p.F298L|SETD5_uc003bru.2_Missense_Mutation_p.F219L|SETD5_uc003brv.2_Missense_Mutation_p.F206L|SETD5_uc010hck.2_5'Flank|SETD5_uc003brw.1_5'Flank|SETD5_uc003brx.2_5'Flank	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	317	SET.									ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		CAATGGGCATTTCTTCAAAAA	0.423000													21	102					0	0	0.00188189	0	0
IL17RC	84818	broad.mit.edu	37	3	9970149	9970149	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:9970149C>T	uc003bua.2	+	11	1487	c.1251C>T	c.(1249-1251)TCC>TCT	p.S417S	CIDEC_uc003bto.2_Intron|IL17RC_uc011ato.1_RNA|IL17RC_uc010hcs.2_Silent_p.S321S|IL17RC_uc003btz.2_Silent_p.S346S|IL17RC_uc011atp.1_Silent_p.S202S|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Silent_p.S331S|IL17RC_uc010hct.2_Silent_p.S346S|IL17RC_uc010hcu.2_Silent_p.S346S|IL17RC_uc010hcv.2_Silent_p.S331S|IL17RC_uc011atq.1_Silent_p.S331S|IL17RC_uc003buc.2_5'UTR|IL17RC_uc003bue.2_5'Flank	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	417	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						CACCGCTTTCCTGGGAGAACG	0.672000													9	86					0	0	0.000673444	0	0
GRIP2	80852	broad.mit.edu	37	3	14561972	14561972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:14561972G>A	uc011avi.1	-	9	1076	c.1076C>T	c.(1075-1077)TCG>TTG	p.S359L	GRIP2_uc011avh.1_5'UTR	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	262	PDZ 3.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GGTGGTGAGCGAGATCCCCAG	0.567000													9	28					0	0	0.000673444	0	0
GADL1	339896	broad.mit.edu	37	3	30842485	30842485	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:30842485G>A	uc003cep.2	-	12	1193	c.1146C>T	c.(1144-1146)ATC>ATT	p.I382I	GADL1_uc003ceq.1_Silent_p.I382I	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	382					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	TGCTACACTGGATAGACTTGT	0.438000													16	61					0	0	0.000422831	0	0
CMTM8	152189	broad.mit.edu	37	3	32398964	32398964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:32398964C>T	uc003cex.2	+	2	541	c.247C>T	c.(247-249)CTC>TTC	p.L83F	CMTM8_uc010hfu.2_Intron	NM_178868	NP_849199	Q8IZV2	CKLF8_HUMAN	CKLF-like MARVEL transmembrane domain containing	83	Helical; (Potential).|MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						TTACTGGGTCCTCACCGTCTT	0.517000													10	95					0	0	0.000442599	0	0
SCN5A	6331	broad.mit.edu	37	3	38620983	38620983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:38620983C>T	uc003cio.2	-	18	3426	c.3232G>A	c.(3232-3234)GAA>AAA	p.E1078K	SCN5A_uc003cin.2_Missense_Mutation_p.E1077K|SCN5A_uc003cil.3_Missense_Mutation_p.E1078K|SCN5A_uc010hhi.2_Missense_Mutation_p.E1078K|SCN5A_uc010hhk.2_Missense_Mutation_p.E1077K|SCN5A_uc011ayr.1_Intron|SCN5A_uc010hhj.1_Missense_Mutation_p.E688K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1078					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGCTGGGATTCCTGCTGAAAA	0.647000													6	29					0	0	0.000157383	0	0
SCN5A	6331	broad.mit.edu	37	3	38629053	38629053	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:38629053C>T	uc003cio.2	-	15	2468	c.2274G>A	c.(2272-2274)GGG>GGA	p.G758G	SCN5A_uc003cin.2_Silent_p.G758G|SCN5A_uc003cil.3_Silent_p.G758G|SCN5A_uc010hhi.2_Silent_p.G758G|SCN5A_uc010hhk.2_Silent_p.G758G|SCN5A_uc011ayr.1_Silent_p.G758G|SCN5A_uc010hhj.1_Silent_p.G369G	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	758	Helical; Name=S2 of repeat II; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CTGTGAAAATCCCTGTGAAGA	0.537000													11	38					0	0	0.00244969	0	0
SCN5A	6331	broad.mit.edu	37	3	38645372	38645372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:38645372C>T	uc003cio.2	-	12	1915	c.1721G>A	c.(1720-1722)GGA>GAA	p.G574E	SCN5A_uc003cin.2_Missense_Mutation_p.G574E|SCN5A_uc003cil.3_Missense_Mutation_p.G574E|SCN5A_uc010hhi.2_Missense_Mutation_p.G574E|SCN5A_uc010hhk.2_Missense_Mutation_p.G574E|SCN5A_uc011ayr.1_Missense_Mutation_p.G574E|SCN5A_uc010hhj.1_Missense_Mutation_p.G185E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	574					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ACTGGGCTGTCCCTGGGCACT	0.627000													27	88					0	0	0.00127121	0	0
SCN10A	6336	broad.mit.edu	37	3	38798333	38798333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:38798333C>T	uc003ciq.2	-	9	1122	c.1122G>A	c.(1120-1122)ATG>ATA	p.M374I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	374	Helical; Name=S6 of repeat I; (Potential).|I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CAAAAAAGATCATATAGATTT	0.473000													10	108					0	0	0.000442599	0	0
SLC6A20	54716	broad.mit.edu	37	3	45800494	45800494	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:45800494C>T	uc011bai.1	-	11	1879	c.1755G>A	c.(1753-1755)AGG>AGA	p.R585R	SLC6A20_uc003cow.2_Silent_p.R235R|SLC6A20_uc011baj.1_Silent_p.R548R	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	585	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		CTGCGTCTCCCCTCTTGAGGC	0.592000													9	55					0	0	0.000673444	0	0
SETD2	29072	broad.mit.edu	37	3	47129691	47129691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:47129691G>A	uc003cqs.2	-	10	5242	c.5189C>T	c.(5188-5190)TCT>TTT	p.S1730F	SETD2_uc003cqv.2_Missense_Mutation_p.S1797F	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1730					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		GTTTTTATCAGAGAGACCCTC	0.383000			N|F|S|Mis		clear cell renal carcinoma								15	125					0	0	0.000308642	0	0
COL7A1	1294	broad.mit.edu	37	3	48616931	48616931	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:48616931C>T	uc003ctz.2	-	59	5254	c.5253G>A	c.(5251-5253)CGG>CGA	p.R1751R	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1751	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTGGGGGTCCCCGAAACCCTT	0.607000													6	25					0	0	0.00198382	0	0
BSN	8927	broad.mit.edu	37	3	49699811	49699811	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:49699811G>A	uc003cxe.3	+	6	10647	c.10533G>A	c.(10531-10533)TTG>TTA	p.L3511L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3511					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TCAGTCCTTTGGGGAGGCCCC	0.672000													10	23					0	0	0.000442599	0	0
RNF123	63891	broad.mit.edu	37	3	49753850	49753850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:49753850C>T	uc003cxh.2	+	35	3526	c.3440C>T	c.(3439-3441)CCC>CTC	p.P1147L	RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	1147						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GACCACTATCCCATTCTGGTG	0.642000													27	207					0	0	0.00178596	0	0
HEMK1	51409	broad.mit.edu	37	3	50615280	50615280	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:50615280G>A	uc003dau.2	+	7	934	c.638G>A	c.(637-639)TGG>TAG	p.W213*	HEMK1_uc003dav.2_Nonsense_Mutation_p.W213*|HEMK1_uc003daw.2_Nonsense_Mutation_p.W213*	NM_016173	NP_057257	Q9Y5R4	HEMK1_HUMAN	HemK methyltransferase family member 1	213					DNA methylation		DNA binding|N-methyltransferase activity|protein methyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000283)|KIRC - Kidney renal clear cell carcinoma(197;0.0179)|Kidney(197;0.0212)		GACAGGATTTGGATCATCCAC	0.557000													6	95					0	0	0.00198382	0	0
MAPKAPK3	7867	broad.mit.edu	37	3	50683192	50683192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:50683192C>T	uc003day.1	+	9	1276	c.680C>T	c.(679-681)TCC>TTC	p.S227F	MAPKAPK3_uc003daz.1_Missense_Mutation_p.S227F|MAPKAPK3_uc003dba.1_Missense_Mutation_p.S227F|MAPKAPK3_uc010hlr.1_Missense_Mutation_p.S227F	NM_004635	NP_004626	Q16644	MAPK3_HUMAN	mitogen-activated protein kinase-activated	227	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.0188)|Kidney(197;0.0223)		GACATGTGGTCCCTGGGTGTC	0.597000													8	57					0	0	0.000274275	0	0
IQCF3	401067	broad.mit.edu	37	3	51864696	51864696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:51864696C>T	uc010hlx.1	+	5	685	c.344C>T	c.(343-345)GCT>GTT	p.A115V	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	115	IQ.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ATGTGCAATGCTCTCTGCTTG	0.547000													8	80					0	0	0.000442599	0	0
TNNC1	7134	broad.mit.edu	37	3	52485442	52485442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:52485442C>T	uc003deb.2	-	5	445	c.419G>A	c.(418-420)GGA>GAA	p.G140E		NM_003280	NP_003271	P63316	TNNC1_HUMAN	troponin C, slow	140	EF-hand 4.				cardiac muscle contraction|muscle filament sliding|regulation of ATPase activity|regulation of muscle filament sliding speed|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin filament binding|calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|troponin I binding|troponin T binding				0				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00175)|KIRC - Kidney renal clear cell carcinoma(197;0.00198)|OV - Ovarian serous cystadenocarcinoma(275;0.0525)	Bepridil(DB01244)|Dihydroxyaluminium(DB01375)|Levosimendan(DB00922)	GTTCTTGTCTCCGTCCTTCAT	0.577000													5	31					0	0	0.00116845	0	0
CACNA1D	776	broad.mit.edu	37	3	53844263	53844263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:53844263C>T	uc003dgv.3	+	47	6293	c.6130C>T	c.(6130-6132)CCC>TCC	p.P2044S	CACNA1D_uc003dgu.3_Missense_Mutation_p.P2064S|CACNA1D_uc003dgy.3_Missense_Mutation_p.P2020S|CACNA1D_uc003dgw.3_Missense_Mutation_p.P1711S|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	2044	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CCTGACTGTCCCCAGCAGCTT	0.622000													7	54					0	0	0.000157383	0	0
LRTM1	57408	broad.mit.edu	37	3	54952717	54952717	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:54952717C>G	uc003dhl.2	-	3	941	c.807G>C	c.(805-807)TTG>TTC	p.L269F	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	269	Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		GCTCGCACTCCAAGAGTTCTC	0.607000													8	56					0	0	0.000157383	0	0
FAM116A	201627	broad.mit.edu	37	3	57616707	57616707	+	Splice_Site	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:57616707T>C	uc003dja.2	-	16	1425	c.1354_splice	c.e16-1	p.E452_splice		NM_152678	NP_689891	Q8IWF6	F116A_HUMAN	hypothetical protein LOC201627											pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000621)|KIRC - Kidney renal clear cell carcinoma(284;0.0485)|Kidney(284;0.0607)		ATATCTTTCCTAAAACCAAGA	0.313000													8	80					0	0	0.000274275	0	0
FLNB	2317	broad.mit.edu	37	3	58095323	58095323	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:58095323C>T	uc003djj.2	+	15	2385	c.2220C>T	c.(2218-2220)AGC>AGT	p.S740S	FLNB_uc010hne.2_Silent_p.S740S|FLNB_uc003djk.2_Silent_p.S740S|FLNB_uc010hnf.2_Silent_p.S740S|FLNB_uc003djl.2_Silent_p.S571S|FLNB_uc003djm.2_Silent_p.S571S	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	740	Filamin 6.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGCAAGGTAGCCATCCTCAGA	0.468000													7	94					0	0	0.000157383	0	0
MAGI1	9223	broad.mit.edu	37	3	65367727	65367727	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:65367727G>A	uc003dmn.2	-	16	3052	c.2526C>T	c.(2524-2526)ATC>ATT	p.I842I	MAGI1_uc003dmm.2_Silent_p.I870I|MAGI1_uc003dmo.2_Silent_p.I870I|MAGI1_uc003dmp.2_Silent_p.I842I|MAGI1_uc003dmq.1_5'Flank|MAGI1_uc010hnx.1_Silent_p.I153I	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	870	PDZ 4.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CCAGTGGTACGATGTGACCAA	0.443000													11	77					0	0	0.000673444	0	0
EPHA6	285220	broad.mit.edu	37	3	96962944	96962944	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:96962944T>G	uc010how.1	+	5	1462	c.1419T>G	c.(1417-1419)TGT>TGG	p.C473W	EPHA6_uc003drp.1_Missense_Mutation_p.C473W	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	378	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CCAGCCAGTGTGAGGACTGTG	0.468000													4	61					0	0	0.00024832	0	0
NFKBIZ	64332	broad.mit.edu	37	3	101572239	101572239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:101572239C>T	uc003dvp.2	+	5	984	c.869C>T	c.(868-870)TCT>TTT	p.S290F	NFKBIZ_uc003dvo.2_Missense_Mutation_p.S190F|NFKBIZ_uc010hpo.2_Missense_Mutation_p.S190F|NFKBIZ_uc003dvq.2_Intron	NM_031419	NP_113607	Q9BYH8	IKBZ_HUMAN	nuclear factor of kappa light polypeptide gene	290					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(2)	2						TACCAGTATTCTCCACAGAAC	0.512000													9	82					0	0	0.000673444	0	0
ZPLD1	131368	broad.mit.edu	37	3	102175049	102175049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:102175049C>T	uc003dvs.1	+	11	1222	c.340C>T	c.(340-342)CCT>TCT	p.P114S	ZPLD1_uc003dvt.1_Missense_Mutation_p.P130S|ZPLD1_uc011bhg.1_Missense_Mutation_p.P114S	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	114	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ATCCACAATTCCTGGAGTCAG	0.348000													7	64					0	0	0.000274275	0	0
HHLA2	11148	broad.mit.edu	37	3	108072453	108072453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:108072453G>A	uc003dwy.3	+	4	411	c.244G>A	c.(244-246)GAA>AAA	p.E82K	HHLA2_uc011bhl.1_Intron|HHLA2_uc010hpu.2_Missense_Mutation_p.E82K|HHLA2_uc003dwz.2_Missense_Mutation_p.E82K	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	82	Ig-like V-type 1.					integral to membrane				ovary(1)	1						TGACCATTTGGAAAGCCAAGA	0.413000													6	54					0	0	0.000157383	0	0
MYH15	22989	broad.mit.edu	37	3	108158647	108158647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:108158647C>T	uc003dxa.1	-	25	3129	c.3072G>A	c.(3070-3072)ATG>ATA	p.M1024I		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1024	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TCTCCTCCTCCATGTGCAGGT	0.483000													12	135					0	0	0.000978159	0	0
GCET2	257144	broad.mit.edu	37	3	111842515	111842515	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:111842515C>T	uc003dys.1	-	6	474	c.324G>A	c.(322-324)GAG>GAA	p.E108E	C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron|GCET2_uc003dyt.1_Silent_p.E42E	NM_152785	NP_689998	Q8N6F7	GCET2_HUMAN	germinal center expressed transcript 2 isoform	108						mitochondrion					0						AGGGAACATTCTCATAGTACT	0.498000													13	59					0	0	0.00185496	0	0
BOC	91653	broad.mit.edu	37	3	112987254	112987254	+	Missense_Mutation	SNP	G	A	A	rs149634735		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:112987254G>A	uc003dzx.2	+	5	1106	c.485G>A	c.(484-486)CGG>CAG	p.R162Q	BOC_uc010hqi.2_Missense_Mutation_p.R162Q|BOC_uc003dzy.2_Missense_Mutation_p.R162Q|BOC_uc003dzz.2_Missense_Mutation_p.R162Q|BOC_uc003eab.2_5'Flank	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	162	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			GCCCAGGTCCGGTACAGCGTC	0.592000													5	21					0	0	0.000157383	0	0
C3orf30	152405	broad.mit.edu	37	3	118865127	118865127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:118865127G>A	uc003ecb.1	+	1	131	c.91G>A	c.(91-93)GAA>AAA	p.E31K	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.E31K	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	31										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		TAAGGGCCAGGAAGAAGACGA	0.567000													6	26					0	0	0.00116845	0	0
CASR	846	broad.mit.edu	37	3	121976000	121976000	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:121976000C>T	uc003eev.3	+	3	630	c.258C>T	c.(256-258)GCC>GCT	p.A86A	CASR_uc003eew.3_Silent_p.A86A	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	86	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCAGCCCAGCCCTTCTTCCCA	0.443000													12	88					0	0	0.000978159	0	0
MUC13	56667	broad.mit.edu	37	3	124627062	124627062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:124627062C>T	uc003ehq.1	-	11	1492	c.1468G>A	c.(1468-1470)GCC>ACC	p.A490T		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	490	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane					0						TCTCTGGAGGCCGTTATCCTG	0.493000													5	59					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	3	129130159	129130159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:129130159G>A	uc003emg.2	-	5	1040	c.877C>T	c.(877-879)CCG>TCG	p.P293S		NM_207307	NP_997190			hypothetical protein LOC90288																		TTCTTGAGCGGACCCTTCAGG	0.572000													11	64					0	0	0.00185496	0	0
IFT122	55764	broad.mit.edu	37	3	129195284	129195284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:129195284G>A	uc003emm.2	+	10	1149	c.943G>A	c.(943-945)GGG>AGG	p.G315R	IFT122_uc003eml.2_Missense_Mutation_p.G366R|IFT122_uc003emn.2_Missense_Mutation_p.G256R|IFT122_uc003emo.2_Missense_Mutation_p.G204R|IFT122_uc003emp.2_Missense_Mutation_p.G165R|IFT122_uc010htc.2_Missense_Mutation_p.G307R|IFT122_uc011bky.1_Missense_Mutation_p.G106R|IFT122_uc003emq.2_Missense_Mutation_p.G155R|IFT122_uc003emr.2_Missense_Mutation_p.G106R|IFT122_uc011bla.1_Missense_Mutation_p.G106R|IFT122_uc011bkx.1_Missense_Mutation_p.G155R|IFT122_uc011bkz.1_RNA	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	315	WD 5.				camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						AGTGCGGCTTGGGACTGTTGG	0.512000													19	120					0	0	0.00188189	0	0
COL6A6	131873	broad.mit.edu	37	3	130381032	130381032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:130381032G>A	uc010htl.2	+	34	6413	c.6382G>A	c.(6382-6384)GAA>AAA	p.E2128K	COL6A6_uc003eni.3_Missense_Mutation_p.E227K	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	2128	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GGATGACAAGGAACTGGAGGA	0.478000													18	107					0	0	0.000566183	0	0
EPHB1	2047	broad.mit.edu	37	3	134670597	134670597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:134670597C>T	uc003eqt.2	+	3	728	c.508C>T	c.(508-510)CGG>TGG	p.R170W	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Intron	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	170	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GCCTCTTACTCGGAATGGTTT	0.463000													26	216					0	0	0.0024448	0	0
STAG1	10274	broad.mit.edu	37	3	136323168	136323168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:136323168C>T	uc003era.1	-	4	572	c.280G>A	c.(280-282)GGG>AGG	p.G94R	STAG1_uc003erb.1_Missense_Mutation_p.G94R|STAG1_uc003erc.1_5'UTR|STAG1_uc010hua.1_5'UTR|STAG1_uc003erd.2_5'UTR|STAG1_uc003ere.2_Missense_Mutation_p.G94R	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	94					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						GCACTTTTCCCCAGTTTCACC	0.418000													13	141					0	0	0.000308642	0	0
ATR	545	broad.mit.edu	37	3	142231206	142231206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:142231206G>A	uc003eux.3	-	27	4870	c.4748C>T	c.(4747-4749)TCC>TTC	p.S1583F		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1583					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						GTCAAGCATGGAGAACACAGT	0.428000								Other_conserved_DNA_damage_response_genes					18	104					0	0	0.00074312	0	0
ZBBX	79740	broad.mit.edu	37	3	166960340	166960340	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:166960340G>A	uc003fep.2	-	20	2552	c.2229C>T	c.(2227-2229)TTC>TTT	p.F743F	ZBBX_uc011bpc.1_Silent_p.F782F|ZBBX_uc003feq.2_Silent_p.F714F	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	743						intracellular	zinc ion binding			ovary(2)	2						AGGTCTTAAGGAAATCTGTGG	0.368000													5	71					0	0	0.000602214	0	0
FETUB	26998	broad.mit.edu	37	3	186358421	186358421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr3:186358421G>A	uc010hyq.2	+	2	433	c.172G>A	c.(172-174)GAT>AAT	p.D58N	FETUB_uc011brz.1_Intron|FETUB_uc003fqn.2_Missense_Mutation_p.D58N|FETUB_uc003fqo.2_5'UTR|FETUB_uc010hyr.2_Missense_Mutation_p.D58N|FETUB_uc010hys.2_5'UTR|FETUB_uc003fqp.3_Missense_Mutation_p.D58N	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	58	Cystatin fetuin-B-type 1.					extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		AGACAGAAAGGATGGCTATGT	0.582000													16	164					0	0	0.000566183	0	0
HTT	3064	broad.mit.edu	37	4	3213790	3213790	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:3213790C>T	uc011bvq.1	+	49	6700	c.6555C>T	c.(6553-6555)CTC>CTT	p.L2185L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2183					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TGCAGCAGCTCCCTGCTGTCC	0.532000													5	65					0	0	0.000602214	0	0
GABRG1	2565	broad.mit.edu	37	4	46066470	46066470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:46066470C>T	uc003gxb.2	-	5	765	c.613G>A	c.(613-615)GAA>AAA	p.E205K		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	205	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CTTGAAAATTCCAGTGGACAG	0.274000													44	144					0	0	0.000781405	0	0
ATP10D	57205	broad.mit.edu	37	4	47556760	47556760	+	Silent	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:47556760A>G	uc003gxk.1	+	11	1817	c.1653A>G	c.(1651-1653)CCA>CCG	p.P551P	ATP10D_uc003gxl.1_5'UTR	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	551	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						ACGTGGTACCAGACACCAGGC	0.348000													20	65					0	0	0.00278032	0	0
UGT2B15	7366	broad.mit.edu	37	4	69536262	69536262	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:69536262C>T	uc011cal.1	-	1	113	c.75G>A	c.(73-75)AAG>AAA	p.K25K		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	25					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						ACACTAGCACCTTTCCACAGC	0.448000													134	410					0	0	0.000781405	0	0
UGT2B28	54490	broad.mit.edu	37	4	70156400	70156400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:70156400C>T	uc003hej.2	+	5	1183	c.1181C>T	c.(1180-1182)CCA>CTA	p.P394L	UGT2B28_uc010ihr.2_Intron	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	394					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GTAGGCATTCCATTGTTTTGG	0.463000													32	181					0	0	0.000814825	0	0
WDFY3	23001	broad.mit.edu	37	4	85676507	85676507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:85676507G>A	uc003hpd.2	-	34	5879	c.5471C>T	c.(5470-5472)TCC>TTC	p.S1824F		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1824						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AGTTCCGCTGGAGGCAGGAAC	0.428000													31	75					0	0	0.0024448	0	0
WDFY3	23001	broad.mit.edu	37	4	85731442	85731442	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:85731442A>G	uc003hpd.2	-	14	2351	c.1943T>C	c.(1942-1944)GTT>GCT	p.V648A	WDFY3_uc003hpf.2_Missense_Mutation_p.V648A	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	648						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AAATCCTCCAACTTTCCTAAA	0.418000													11	39					0	0	0.00136819	0	0
PTPN13	5783	broad.mit.edu	37	4	87679897	87679897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:87679897C>T	uc003hpz.2	+	22	3860	c.3380C>T	c.(3379-3381)GCC>GTC	p.A1127V	PTPN13_uc003hpy.2_Missense_Mutation_p.A1127V|PTPN13_uc003hqa.2_Missense_Mutation_p.A1108V|PTPN13_uc003hqb.2_Missense_Mutation_p.A936V	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1127	PDZ 1.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		AGTTCAGTTGCCCCTGGAGGA	0.378000													50	175					0	0	0.000781405	0	0
DSPP	1834	broad.mit.edu	37	4	88534086	88534086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:88534086G>A	uc003hqu.2	+	4	868	c.748G>A	c.(748-750)GGA>AGA	p.G250R		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	250					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		TAGTGGGAATGGAGCAGATGA	0.498000													12	66					0	0	0.000308642	0	0
SPP1	6696	broad.mit.edu	37	4	88902665	88902665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:88902665G>A	uc003hra.2	+	6	420	c.255G>A	c.(253-255)ATG>ATA	p.M85I	SPP1_uc003hrb.2_Missense_Mutation_p.M58I|SPP1_uc003hrc.2_Missense_Mutation_p.M71I|SPP1_uc011cde.1_Missense_Mutation_p.M98I|SPP1_uc003hrd.2_Missense_Mutation_p.M44I	NM_001040058	NP_001035147	P10451	OSTP_HUMAN	secreted phosphoprotein 1 isoform a	85					biomineral tissue development|cell adhesion|decidualization|embryo implantation|ossification|response to vitamin D	extracellular space	cytokine activity			ovary(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-05)		ATGACCACATGGATGATATGG	0.413000													97	190					0	0	0.000781405	0	0
BMPR1B	658	broad.mit.edu	37	4	96045035	96045035	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:96045035A>C	uc003htm.3	+	7	698	c.424A>C	c.(424-426)ATC>CTC	p.I142L	BMPR1B_uc010ilb.2_Missense_Mutation_p.I142L|BMPR1B_uc003htn.3_Missense_Mutation_p.I142L	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	142	Helical; (Potential).				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		CTTGGTCCTTATCATATTATT	0.313000													39	237					0	0	0.00285205	0	0
DKK2	27123	broad.mit.edu	37	4	107845771	107845771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:107845771G>A	uc003hyi.2	-	3	1165	c.460C>T	c.(460-462)CAT>TAT	p.H154Y	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Missense_Mutation_p.H154Y	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	154					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		TTTGAGTAATGACCGTGGTTT	0.453000													12	93					0	0	0.000422831	0	0
ENPEP	2028	broad.mit.edu	37	4	111397936	111397936	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:111397936C>T	uc003iab.3	+	1	708	c.366C>T	c.(364-366)TCC>TCT	p.S122S		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	122	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TGAGCATCTCCATCAACCTGA	0.632000													12	149					0	0	0.00136819	0	0
PITX2	5308	broad.mit.edu	37	4	111539762	111539762	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:111539762G>C	uc003iad.2	-	5	1055	c.473C>G	c.(472-474)CCG>CGG	p.P158R	PITX2_uc003iac.2_Missense_Mutation_p.P165R|PITX2_uc003iae.2_Missense_Mutation_p.P112R|PITX2_uc010iml.2_Missense_Mutation_p.P29R|PITX2_uc003iaf.2_Missense_Mutation_p.P158R	NM_153426	NP_700475	Q99697	PITX2_HUMAN	paired-like homeodomain transcription factor 2	158					determination of left/right symmetry|organ morphogenesis	transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription factor binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00222)		ATTGAACTGCGGCCCGAAGCC	0.592000													4	98					0	0	0.00024832	0	0
KIAA1109	84162	broad.mit.edu	37	4	123192355	123192355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:123192355C>T	uc003ieh.2	+	45	7721	c.7676C>T	c.(7675-7677)TCC>TTC	p.S2559F	KIAA1109_uc003iel.1_Missense_Mutation_p.S494F|KIAA1109_uc003iek.2_Missense_Mutation_p.S1178F	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2559					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TTTACTATTTCCTGTCAGTCA	0.408000													45	273					0	0	0.000781405	0	0
PCDH18	54510	broad.mit.edu	37	4	138451129	138451129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:138451129G>A	uc003ihe.3	-	1	2501	c.2114C>T	c.(2113-2115)TCC>TTC	p.S705F	PCDH18_uc003ihf.3_Missense_Mutation_p.S698F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.S485F|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	705	Helical; (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGCTCCTAAGGAAATAATTAT	0.423000													29	180					0	0	0.00106085	0	0
HHIP	64399	broad.mit.edu	37	4	145573764	145573764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:145573764C>T	uc003ijs.1	+	2	942	c.287C>T	c.(286-288)TCT>TTT	p.S96F	HHIP_uc003ijr.1_Missense_Mutation_p.S96F	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	96						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		CAGATATTTTCTGTTACCAAC	0.343000													58	92					0	0	0.000781405	0	0
RBM46	166863	broad.mit.edu	37	4	155749083	155749083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:155749083G>A	uc003ioo.2	+	5	1639	c.1466G>A	c.(1465-1467)GGG>GAG	p.G489E	RBM46_uc011cim.1_3'UTR|RBM46_uc003iop.1_3'UTR	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	489							nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				CTCTCTTCTGGGACTCCCAGC	0.418000													40	258					0	0	0.00148497	0	0
TMEM192	201931	broad.mit.edu	37	4	166021901	166021901	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:166021901G>A	uc003iqz.3	-	3	417	c.318C>T	c.(316-318)CTC>CTT	p.L106L		NM_001100389	NP_001093859	Q8IY95	TM192_HUMAN	transmembrane protein 192	106	Helical; (Potential).					Golgi apparatus|integral to membrane|late endosome|lysosomal membrane|nucleus				skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0926)		GGAGTAAATGGAGAATCCACA	0.403000													15	80					0	0	0.000422831	0	0
WDR17	116966	broad.mit.edu	37	4	177069353	177069353	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr4:177069353G>A	uc003iuj.2	+	14	1992	c.1836G>A	c.(1834-1836)GTG>GTA	p.V612V	WDR17_uc003iuk.2_Silent_p.V588V|WDR17_uc003ium.3_Silent_p.V588V|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_5'Flank	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	612	WD 11.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		CTGCACCTGTGAGAGGATTAA	0.408000													11	173					0	0	0.000422831	0	0
CCDC127	133957	broad.mit.edu	37	5	205919	205919	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:205919G>A	uc003jam.1	-	3	376	c.276C>T	c.(274-276)CTC>CTT	p.L92L		NM_145265	NP_660308	Q96BQ5	CC127_HUMAN	coiled-coil domain containing 127	92	Potential.										0			all cancers(22;0.0236)|Lung(60;0.113)			GTTCCTTTTCGAGTTCCAAGG	0.502000													36	66					0	0	0.00148497	0	0
DNAH5	1767	broad.mit.edu	37	5	13824441	13824441	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:13824441A>G	uc003jfd.2	-	39	6488	c.6446T>C	c.(6445-6447)GTT>GCT	p.V2149A		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2149	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCATAATGAACCTAGAGAAT	0.378000									Kartagener_syndrome				7	44					0	0	0.000157383	0	0
DNAH5	1767	broad.mit.edu	37	5	13859660	13859660	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:13859660G>A	uc003jfd.2	-	30	4893	c.4851C>T	c.(4849-4851)AAC>AAT	p.N1617N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1617	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTCTGTTGAGTTGGAAAGGT	0.428000									Kartagener_syndrome				35	133					0	0	0.000953801	0	0
CDH10	1008	broad.mit.edu	37	5	24535336	24535336	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:24535336G>A	uc003jgr.1	-	5	1031	c.699C>T	c.(697-699)TAC>TAT	p.Y233Y	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	233	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TGACCACTTGGTATTGCTCTC	0.448000										HNSCC(23;0.051)			11	78					0	0	0.00244969	0	0
C5orf23	79614	broad.mit.edu	37	5	32789519	32789519	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:32789519C>T	uc003jhw.1	+	1	575	c.12C>T	c.(10-12)TCC>TCT	p.S4S		NM_024563	NP_078839			hypothetical protein LOC79614												0						TGAGAAGGTCCCTGAAAACAT	0.388000													19	115					0	0	0.00047179	0	0
C9	735	broad.mit.edu	37	5	39285309	39285309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:39285309C>T	uc003jlv.3	-	11	1761	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	558					complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			CTCTATTTTTCATTGGGGAAC	0.408000													16	60					0	0	0.00229938	0	0
DAB2	1601	broad.mit.edu	37	5	39383359	39383359	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:39383359G>A	uc003jlx.2	-	10	1233	c.702C>T	c.(700-702)ATC>ATT	p.I234I	DAB2_uc003jlw.2_Silent_p.I213I	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	234					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			CCACTAACAGGATATCTTTGC	0.348000													20	100					0	0	0.00278032	0	0
C7	730	broad.mit.edu	37	5	40958291	40958291	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:40958291T>C	uc003jmh.2	+	11	1531	c.1417T>C	c.(1417-1419)TGT>CGT	p.C473R	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	473	EGF-like.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GGGGACCCATTGTCTGTGCCA	0.502000													8	83					0	0	0.000442599	0	0
PLK2	10769	broad.mit.edu	37	5	57751416	57751416	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:57751416G>A	uc003jrn.2	-	11	1702	c.1575C>T	c.(1573-1575)GTC>GTT	p.V525V		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	525	POLO box 1.				positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		AAAGGACACCGACGGTGTGGT	0.438000													7	31					0	0	0.000157383	0	0
MAST4	375449	broad.mit.edu	37	5	66084622	66084622	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:66084622G>A	uc003jur.3	+	3	950	c.642G>A	c.(640-642)CTG>CTA	p.L214L	MAST4_uc010iwz.2_Silent_p.L214L	NM_198828	NP_942123	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	214						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CCGCCAGCCTGGTGAGTGTCC	0.612000													6	18					0	0	0.00198382	0	0
IQGAP2	10788	broad.mit.edu	37	5	75871584	75871584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:75871584C>T	uc003kek.2	+	5	670	c.448C>T	c.(448-450)CAC>TAC	p.H150Y		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	150	CH.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		ATATTGCATTCACGCACTGAG	0.289000													9	63					0	0	0.000978159	0	0
CMYA5	202333	broad.mit.edu	37	5	79028492	79028492	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:79028492G>T	uc003kgc.2	+	2	3976	c.3904G>T	c.(3904-3906)GAG>TAG	p.E1302*		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1302						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGTGAAAATGGAGATGAAACA	0.403000													6	28					5.9392e-07	2.35162e-06	0.00116845	1	0
CMYA5	202333	broad.mit.edu	37	5	79031243	79031243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:79031243C>T	uc003kgc.2	+	2	6727	c.6655C>T	c.(6655-6657)CCT>TCT	p.P2219S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2219						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TGTGATAGATCCTGAAGGTAC	0.403000													39	186					0	0	0.0025221	0	0
HAPLN1	1404	broad.mit.edu	37	5	82948485	82948485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:82948485C>T	uc003kim.2	-	2	330	c.259G>A	c.(259-261)GAT>AAT	p.D87N	HAPLN1_uc003kin.2_Missense_Mutation_p.D87N	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	87	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		TTGAGGTAATCCGAAGTTAGC	0.433000													15	95					0	0	0.000566183	0	0
GPR98	84059	broad.mit.edu	37	5	89940674	89940674	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:89940674C>T	uc003kju.2	+	15	2982	c.2886C>T	c.(2884-2886)TCC>TCT	p.S962S	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	962	Extracellular (Potential).|Calx-beta 7.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCATTTACTCCCTTCCAGATG	0.313000													5	67					0	0	0.000602214	0	0
CAST	831	broad.mit.edu	37	5	96065383	96065383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:96065383C>T	uc003klz.1	+	6	416	c.254C>T	c.(253-255)TCC>TTC	p.S85F	CAST_uc003klt.2_Missense_Mutation_p.S85F|CAST_uc003klu.2_Missense_Mutation_p.S168F|CAST_uc003klv.2_Missense_Mutation_p.S146F|CAST_uc003klw.2_Missense_Mutation_p.S149F|CAST_uc003klx.2_Missense_Mutation_p.S127F|CAST_uc003kly.2_Missense_Mutation_p.S146F|CAST_uc011cuo.1_Missense_Mutation_p.S131F|CAST_uc011cup.1_Missense_Mutation_p.S63F|CAST_uc011cuq.1_Intron|CAST_uc011cur.1_Missense_Mutation_p.S71F|CAST_uc011cus.1_Missense_Mutation_p.S85F|CAST_uc003kma.1_Missense_Mutation_p.S44F|CAST_uc011cut.1_Missense_Mutation_p.S63F|CAST_uc003kmb.2_Missense_Mutation_p.S44F|CAST_uc003kmc.2_Missense_Mutation_p.S85F|CAST_uc003kmd.2_Missense_Mutation_p.S63F|CAST_uc003kme.2_Missense_Mutation_p.S44F|CAST_uc003kmf.2_Missense_Mutation_p.S63F	NM_001042443	NP_001035908	P20810	ICAL_HUMAN	calpastatin isoform i	85							calcium-dependent cysteine-type endopeptidase inhibitor activity|protein binding			central_nervous_system(3)|ovary(1)|kidney(1)	5		all_cancers(142;5.27e-07)|all_epithelial(76;8.21e-10)|all_lung(232;0.000396)|Lung NSC(167;0.000539)|Ovarian(225;0.024)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;6.85e-15)		AAAGCAGTTTCCAGATCAGCT	0.413000													10	67					0	0	0.00185496	0	0
ERAP2	64167	broad.mit.edu	37	5	96251465	96251465	+	Silent	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:96251465T>C	uc003kmq.2	+	18	3441	c.2731T>C	c.(2731-2733)TTG>CTG	p.L911L	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Silent_p.L911L|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Silent_p.L860L|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	911	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		CAAGGATAAGTTGCAAGAGGT	0.264000													15	149					0	0	0.00074312	0	0
STARD4	134429	broad.mit.edu	37	5	110835597	110835597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:110835597C>T	uc003kph.1	-	6	689	c.605G>A	c.(604-606)CGA>CAA	p.R202Q	STARD4_uc010jbw.1_Missense_Mutation_p.R104Q|STARD4_uc010jbx.1_Missense_Mutation_p.R104Q|STARD4_uc003kpi.1_RNA	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	202	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		TAAAGCTTTTCGTAAATCACC	0.403000													15	63					0	0	0.00244969	0	0
APC	324	broad.mit.edu	37	5	112179658	112179658	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:112179658C>T	uc010jby.2	+	16	8747	c.8367C>T	c.(8365-8367)AGC>AGT	p.S2789S	APC_uc011cvt.1_Silent_p.S2771S|APC_uc003kpz.3_Silent_p.S2789S|APC_uc003kpy.3_Silent_p.S2789S|APC_uc010jbz.2_Silent_p.S2506S|APC_uc010jca.2_Silent_p.S2089S	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	2789	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		ACAACCCAAGCCCTAGGAAAA	0.478000		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			12	75					0	0	0.00244969	0	0
PPIC	5480	broad.mit.edu	37	5	122365059	122365059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:122365059G>A	uc003kth.2	-	2	277	c.172C>T	c.(172-174)CTC>TTC	p.L58F	PPIC_uc011cwp.1_Missense_Mutation_p.L58F	NM_000943	NP_000934	P45877	PPIC_HUMAN	peptidylprolyl isomerase C	58	PPIase cyclophilin-type.				protein folding|signal transduction	cytoplasm	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity|unfolded protein binding			ovary(1)	1		all_cancers(142;0.0168)|Prostate(80;0.0322)|Lung NSC(810;0.102)|all_lung(232;0.163)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	OV - Ovarian serous cystadenocarcinoma(64;0.000331)|Epithelial(69;0.000553)|all cancers(49;0.00505)	L-Proline(DB00172)	TTTCCAAAGAGGCCAATCACA	0.403000													25	114					0	0	0.00106085	0	0
FAM53C	51307	broad.mit.edu	37	5	137680711	137680711	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:137680711C>G	uc003lcv.2	+	4	804	c.334C>G	c.(334-336)CCT>GCT	p.P112A	FAM53C_uc003lcw.2_Missense_Mutation_p.P112A|FAM53C_uc011cyq.1_Intron|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	112										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GCCCCCTGCCCCTCCATCCAA	0.657000													4	60					0	0	0.000602214	0	0
PSD2	84249	broad.mit.edu	37	5	139216477	139216477	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:139216477C>T	uc003leu.1	+	10	1690	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	495					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACGCGAATCCTGGATGGTG	0.577000													11	79					0	0	0.00244969	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503920	140503920	+	Silent	SNP	G	A	A	rs144682616		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:140503920G>A	uc003lip.1	+	1	2340	c.2340G>A	c.(2338-2340)AGG>AGA	p.R780R		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	780	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCGGGAGGGAAGTTAAGG	0.448000													4	45					0	0	0.00198382	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605268	140605268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:140605268C>T	uc003ljb.2	+	1	2191	c.2191C>T	c.(2191-2193)CCC>TCC	p.P731S	PCDHB14_uc011dal.1_Missense_Mutation_p.P578S	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	731	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCGAGGGTCCCTTTCCAGG	0.647000													28	128					0	0	0.00106085	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393464	145393464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:145393464C>T	uc003lnt.2	+	5	1137	c.899C>T	c.(898-900)TCC>TTC	p.S300F	SH3RF2_uc011dbl.1_Missense_Mutation_p.S300F	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	300							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGGCAGTTTTCCATCACAACA	0.577000													12	74					0	0	0.00244969	0	0
NMUR2	56923	broad.mit.edu	37	5	151784537	151784537	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:151784537G>A	uc003luv.2	-	1	304	c.138C>T	c.(136-138)CTC>CTT	p.L46L		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	46	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CAGACACGGGGAGGAAGAAGT	0.547000													6	48					0	0	0.00198382	0	0
GRIA1	2890	broad.mit.edu	37	5	153029900	153029900	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:153029900C>T	uc003lva.3	+	4	836	c.471C>T	c.(469-471)GTC>GTT	p.V157V	GRIA1_uc003luy.3_Silent_p.V157V|GRIA1_uc003luz.3_Silent_p.V62V|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.V77V|GRIA1_uc011dcx.1_Silent_p.V88V|GRIA1_uc011dcy.1_Silent_p.V167V|GRIA1_uc011dcz.1_Silent_p.V167V|GRIA1_uc010jia.1_Silent_p.V137V	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	157	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GCTTATCCGTCCTGCAGAAAG	0.512000													11	49					0	0	0.00185496	0	0
CYFIP2	26999	broad.mit.edu	37	5	156736808	156736808	+	Nonsense_Mutation	SNP	A	T	T	rs3207362		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:156736808A>T	uc003lwq.2	+	12	1096	c.958A>T	c.(958-960)AAG>TAG	p.K320*	CYFIP2_uc011ddn.1_Nonsense_Mutation_p.K294*|CYFIP2_uc011ddo.1_Nonsense_Mutation_p.K124*|CYFIP2_uc003lwr.2_Nonsense_Mutation_p.K320*|CYFIP2_uc003lws.2_Nonsense_Mutation_p.K320*|CYFIP2_uc003lwt.2_Nonsense_Mutation_p.K198*|CYFIP2_uc011ddp.1_Nonsense_Mutation_p.K54*	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	320					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CAGATACATTAAGACCAGTGC	0.577000													31	200					0	0	0.0024448	0	0
CYFIP2	26999	broad.mit.edu	37	5	156788477	156788477	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:156788477G>A	uc003lwq.2	+	28	3048	c.2910G>A	c.(2908-2910)GGG>GGA	p.G970G	CYFIP2_uc011ddn.1_Silent_p.G944G|CYFIP2_uc011ddo.1_Silent_p.G774G|CYFIP2_uc003lwr.2_Silent_p.G970G|CYFIP2_uc003lws.2_Silent_p.G970G|CYFIP2_uc003lwt.2_Silent_p.G873G|CYFIP2_uc011ddp.1_Silent_p.G704G	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	995					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACCTCCCAGGGATCCTGGAGT	0.552000													19	119					0	0	0.00278032	0	0
ODZ2	57451	broad.mit.edu	37	5	167645775	167645775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:167645775G>A	uc010jjd.2	+	23	4852	c.4852G>A	c.(4852-4854)GAA>AAA	p.E1618K	ODZ2_uc003lzr.3_Missense_Mutation_p.E1388K|ODZ2_uc003lzt.3_Missense_Mutation_p.E991K|ODZ2_uc010jje.2_Missense_Mutation_p.E882K	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGATGTCACTGAATTGATTGA	0.473000													10	83					0	0	0.000673444	0	0
LCP2	3937	broad.mit.edu	37	5	169677818	169677818	+	Nonsense_Mutation	SNP	G	C	C	rs76018609		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:169677818G>C	uc003man.1	-	20	1602	c.1395C>G	c.(1393-1395)TAC>TAG	p.Y465*	C5orf58_uc003mal.2_Intron|LCP2_uc011des.1_Nonsense_Mutation_p.Y260*|LCP2_uc011det.1_Nonsense_Mutation_p.Y294*	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	465	SH2.				immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		CTTTATCTTTGTACAACACCA	0.383000													10	75					0	0	0.000673444	0	0
FGFR4	2264	broad.mit.edu	37	5	176524534	176524534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:176524534G>A	uc003mfl.2	+	18	2433	c.2266G>A	c.(2266-2268)GAC>AAC	p.D756N	FGFR4_uc003mfm.2_Missense_Mutation_p.D756N|FGFR4_uc011dfu.1_Missense_Mutation_p.D688N|FGFR4_uc003mfo.2_Missense_Mutation_p.D716N	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	756	Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	ACAGTACCTCGACCTCCGCCT	0.672000										TSP Lung(9;0.080)			10	58					0	0	0.000978159	0	0
OR2V2	285659	broad.mit.edu	37	5	180582469	180582469	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr5:180582469A>G	uc011dhj.1	+	1	527	c.527A>G	c.(526-528)AAC>AGC	p.N176S		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGAAGGTGAACCATTTCTTC	0.473000													30	188					0	0	0.000692331	0	0
HIST1H1D	3007	broad.mit.edu	37	6	26234911	26234911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:26234911C>T	uc003nhd.2	-	1	306	c.251G>A	c.(250-252)GGC>GAC	p.G84D		NM_005320	NP_005311	P16402	H13_HUMAN	histone cluster 1, H1d	84	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding			skin(1)	1		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				GCTCTTGAGGCCAAGCTTGAT	0.547000													14	130					0	0	0.000422831	0	0
NKAPL	222698	broad.mit.edu	37	6	28227782	28227782	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:28227782C>T	uc003nkt.2	+	1	685	c.633C>T	c.(631-633)GAC>GAT	p.D211D	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	211	Lys-rich.									upper_aerodigestive_tract(1)|ovary(1)	2						CAGAGTCTGACACAAATTCTG	0.254000													10	95					0	0	0.000673444	0	0
OR2W1	26692	broad.mit.edu	37	6	29012641	29012641	+	Nonsense_Mutation	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:29012641G>C	uc003nlw.2	-	1	312	c.312C>G	c.(310-312)TAC>TAG	p.Y104*		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCAACCACATGTAAACATAGA	0.438000													11	41					0	0	0.000673444	0	0
OR10C1	442194	broad.mit.edu	37	6	29408667	29408667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:29408667G>A	uc011dlp.1	+	1	875	c.875G>A	c.(874-876)CGG>CAG	p.R292Q	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TACAGCCTGCGGAACACAGAG	0.542000													8	139					0	0	0.000673444	0	0
DDR1	780	broad.mit.edu	37	6	30857097	30857097	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:30857097C>A	uc003nrr.2	+	5	566	c.307C>A	c.(307-309)CAG>AAG	p.Q103K	DDR1_uc010jse.2_Missense_Mutation_p.Q103K|DDR1_uc003nrq.2_Missense_Mutation_p.Q103K|DDR1_uc003nrs.2_Missense_Mutation_p.Q103K|DDR1_uc003nrt.2_Missense_Mutation_p.Q103K|DDR1_uc011dms.1_Missense_Mutation_p.Q121K|DDR1_uc011dmt.1_Missense_Mutation_p.Q129K|DDR1_uc003nru.2_Missense_Mutation_p.Q103K|DDR1_uc011dmu.1_Missense_Mutation_p.Q103K|DDR1_uc003nrv.2_Missense_Mutation_p.Q103K|DDR1_uc003nrw.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	103	Extracellular (Potential).|F5/8 type C.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	GGTGGGCACCCAGGGACGGCA	0.672000													6	63					0.00116845	0.00459261	0.00116845	1	0
BAT2	7916	broad.mit.edu	37	6	31603424	31603424	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:31603424C>T	uc003nvb.3	+	24	5688	c.5439C>T	c.(5437-5439)TCC>TCT	p.S1813S	BAT2_uc003nvc.3_Silent_p.S1813S	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1813						cytoplasm|nucleus	protein binding				0						AGCCACAATCCAAGAACCTGG	0.597000													17	43					0	0	0.000566183	0	0
TNXB	7148	broad.mit.edu	37	6	32032747	32032747	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:32032747C>A	uc003nzl.2	-	19	6894	c.6692G>T	c.(6691-6693)GGG>GTG	p.G2231V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2303	Fibronectin type-III 15.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CTGCCCGTCCCCATTCTTAAA	0.607000													12	377					0.00136819	0.00536791	0.00136819	1	0
PPIL1	51645	broad.mit.edu	37	6	36823601	36823601	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:36823601G>A	uc003omu.2	-	4	741	c.489C>T	c.(487-489)TAC>TAT	p.Y163Y		NM_016059	NP_057143	Q9Y3C6	PPIL1_HUMAN	peptidylprolyl isomerase-like 1	163	PPIase cyclophilin-type.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						ACCCAGAAGGGTATGCCTTAA	0.498000													21	85					0	0	0.000720815	0	0
DNAH8	1769	broad.mit.edu	37	6	38942249	38942249	+	Silent	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:38942249T>C	uc003ooe.1	+	83	12727	c.12127T>C	c.(12127-12129)TTA>CTA	p.L4043L	DNAH8_uc003oog.1_Silent_p.L492L	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CATCAGTAATTTACCCATGTG	0.443000													24	54					0	0	0.000720815	0	0
EPHA7	2045	broad.mit.edu	37	6	94066482	94066482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:94066482C>T	uc003poe.2	-	5	1518	c.1277G>A	c.(1276-1278)CGA>CAA	p.R426Q	EPHA7_uc003pof.2_Missense_Mutation_p.R426Q|EPHA7_uc011eac.1_Missense_Mutation_p.R426Q	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	426	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity	p.R426*(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CCTCTGGGATCGGCTTAAGTC	0.418000													17	66					0	0	0.00074312	0	0
FHL5	9457	broad.mit.edu	37	6	97058559	97058559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:97058559G>A	uc003pos.1	+	6	1021	c.616G>A	c.(616-618)GAC>AAC	p.D206N	FHL5_uc003pot.1_Missense_Mutation_p.D206N	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	206	LIM zinc-binding 3.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		GTCCAGAGACGACTATCCATT	0.433000													24	99					0	0	0.00106085	0	0
MAP7	9053	broad.mit.edu	37	6	136704811	136704811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:136704811C>T	uc003qgz.2	-	6	881	c.635G>A	c.(634-636)AGA>AAA	p.R212K	MAP7_uc011edf.1_Missense_Mutation_p.R197K|MAP7_uc011edg.1_Missense_Mutation_p.R234K|MAP7_uc010kgu.2_Missense_Mutation_p.R234K|MAP7_uc011edh.1_Intron|MAP7_uc010kgv.2_Missense_Mutation_p.R234K|MAP7_uc010kgs.2_Missense_Mutation_p.R66K|MAP7_uc011edi.1_Missense_Mutation_p.R66K|MAP7_uc010kgq.1_Missense_Mutation_p.R118K|MAP7_uc003qha.1_Intron|MAP7_uc010kgr.2_Missense_Mutation_p.R66K|MAP7_uc010kgt.2_Missense_Mutation_p.R234K	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	212					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		GACTGTACCTCTATCTGGAGA	0.373000													12	48					0	0	0.00185496	0	0
SASH1	23328	broad.mit.edu	37	6	148854931	148854931	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:148854931A>G	uc003qme.1	+	15	2234	c.1759A>G	c.(1759-1761)AGC>GGC	p.S587G	SASH1_uc011eeb.1_Missense_Mutation_p.S348G|SASH1_uc003qmf.1_5'UTR	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	587	SH3.						protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		CGATATAATCAGCAAGCCACC	0.478000													34	123					0	0	0.000953801	0	0
C6orf97	80129	broad.mit.edu	37	6	151894598	151894598	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:151894598T>C	uc003qol.2	+	6	1153	c.1064T>C	c.(1063-1065)ATG>ACG	p.M355T		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	355											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		ATTCGAGAAATGGACAGCCGG	0.488000													8	48					0	0	0.000673444	0	0
TIAM2	26230	broad.mit.edu	37	6	155450802	155450802	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:155450802T>A	uc003qqb.2	+	6	1718	c.445T>A	c.(445-447)TCC>ACC	p.S149T	TIAM2_uc003qqe.2_Missense_Mutation_p.S149T	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	149					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GAGCATTGCCTCCACCCCACC	0.572000													9	26					0	0	0.000978159	0	0
TIAM2	26230	broad.mit.edu	37	6	155450804	155450804	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:155450804C>T	uc003qqb.2	+	6	1720	c.447C>T	c.(445-447)TCC>TCT	p.S149S	TIAM2_uc003qqe.2_Silent_p.S149S	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	149					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GCATTGCCTCCACCCCACCGG	0.577000													10	26					0	0	0.00136819	0	0
SYNJ2	8871	broad.mit.edu	37	6	158502225	158502225	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:158502225C>T	uc003qqx.1	+	19	2727	c.2652C>T	c.(2650-2652)TTC>TTT	p.F884F	SYNJ2_uc003qqw.1_Silent_p.F884F|SYNJ2_uc003qqy.1_Silent_p.F597F|SYNJ2_uc003qqz.1_Silent_p.F501F|SYNJ2_uc003qra.1_Silent_p.F227F	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	884	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		TGTCCTCCTTCCAGGGCCCCC	0.532000													11	72					0	0	0.00136819	0	0
ETV1	2115	broad.mit.edu	37	7	13971334	13971334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:13971334G>A	uc011jxq.1	-	9	1334	c.595C>T	c.(595-597)CCT>TCT	p.P199S	ETV1_uc011jxn.1_Missense_Mutation_p.P159S|ETV1_uc011jxo.1_Missense_Mutation_p.P96S|ETV1_uc011jxp.1_Missense_Mutation_p.P141S|ETV1_uc003ssw.3_Missense_Mutation_p.P199S|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.P181S|ETV1_uc011jxs.1_Missense_Mutation_p.P181S|ETV1_uc010ktv.2_Missense_Mutation_p.P68S	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	199					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						GTCGGCAAAGGAGGAAAGGAG	0.478000			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								10	39					0	0	0.000978159	0	0
OSBPL3	26031	broad.mit.edu	37	7	24888786	24888786	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:24888786G>T	uc003sxf.2	-	12	1573	c.1168C>A	c.(1168-1170)CAA>AAA	p.Q390K	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Intron|OSBPL3_uc003sxh.2_Missense_Mutation_p.Q359K|OSBPL3_uc003sxi.2_Intron|OSBPL3_uc003sxj.1_Intron|OSBPL3_uc003sxk.1_Intron	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	390					lipid transport		lipid binding|protein binding			skin(1)	1						TCTGTGTTTTGTGCTAGGGCC	0.512000													13	110					4.3838e-07	1.73896e-06	0.00185496	1	0
GCK	2645	broad.mit.edu	37	7	44192912	44192912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:44192912G>A	uc003tkl.2	-	2	666	c.196C>T	c.(196-198)CCA>TCA	p.P66S	GCK_uc003tkj.1_Missense_Mutation_p.P65S|GCK_uc003tkk.1_Missense_Mutation_p.P67S	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	66					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						GAGCCTTCTGGGGTGGAGCGC	0.617000													33	279					0	0	0.000953801	0	0
TBRG4	9238	broad.mit.edu	37	7	45145221	45145221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:45145221G>A	uc003tmv.2	-	3	680	c.554C>T	c.(553-555)GCC>GTC	p.A185V	TBRG4_uc003tmu.2_Missense_Mutation_p.A10V|TBRG4_uc003tmw.2_Missense_Mutation_p.A185V|TBRG4_uc003tmx.2_Missense_Mutation_p.A185V|TBRG4_uc011kcd.1_Missense_Mutation_p.A196V|SNORA5A_uc003tmy.2_5'Flank|SNORA5C_uc003tmz.1_5'Flank	NM_004749	NP_004740	Q969Z0	TBRG4_HUMAN	cell cycle progression 2 protein isoform 1	185					apoptosis|cell cycle arrest|cellular respiration|G1 phase of mitotic cell cycle|positive regulation of cell proliferation	mitochondrion	ATP binding|protein binding|protein kinase activity				0						TGCCAGGAAGGCCAGGTGCTT	0.612000													31	95					0	0	0.001512	0	0
CDC14C	168448	broad.mit.edu	37	7	48964819	48964819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:48964819G>A	uc010kyv.1	+	1	663	c.551G>A	c.(550-552)GGA>GAA	p.G184E		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						GCAGAAAACGGAGATTTAAAT	0.388000													9	58					0	0	0.000274275	0	0
PMS2L4	5382	broad.mit.edu	37	7	66760755	66760755	+	RNA	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:66760755C>T	uc003tvo.2	-	4		c.305G>A			PMS2L4_uc003tvq.2_RNA|PMS2L4_uc003tvr.3_RNA|PMS2L4_uc003tvs.3_RNA					Homo sapiens cDNA clone IMAGE:4081618.												0						TCCCAACCTTCGCCGATGCGT	0.517000													8	100					0	0	0.000442599	0	0
CALN1	83698	broad.mit.edu	37	7	71488740	71488740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:71488740C>T	uc003twa.3	-	4	804	c.277G>A	c.(277-279)GAT>AAT	p.D93N	CALN1_uc003twb.3_Missense_Mutation_p.D135N|CALN1_uc003twc.3_Missense_Mutation_p.D93N	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	93	2 (Potential).|EF-hand 2.|Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				TCATCAAAATCCACCTGGCCA	0.458000													19	101					0	0	0.00074312	0	0
GRM3	2913	broad.mit.edu	37	7	86468913	86468913	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:86468913C>T	uc003uid.2	+	4	3182	c.2083C>T	c.(2083-2085)CTG>TTG	p.L695L	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.L567L|GRM3_uc010leh.2_Silent_p.L287L	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	695	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CTGCCTGGGTCTGATCCTGGT	0.537000													7	53					0	0	0.00198382	0	0
COL1A2	1278	broad.mit.edu	37	7	94041986	94041986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:94041986G>A	uc003ung.1	+	25	1966	c.1495G>A	c.(1495-1497)GGC>AGC	p.G499S	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	499					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TGGACCCAAAGGCCCCACTGT	0.527000										HNSCC(75;0.22)			8	41					0	0	0.000442599	0	0
MIR25	407014	broad.mit.edu	37	7	99691254	99691254	+	RNA	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:99691254C>T	hsa-mir-25|MI0000082	-			c.13C>T			MCM7_uc003usv.1_Intron|MCM7_uc003usw.1_Intron|MCM7_uc003usx.1_Intron|uc003usy.1_RNA																	0						GTCTCCGCCTCTCAACACTGG	0.632000													5	27					0	0	0.000602214	0	0
ZCWPW1	55063	broad.mit.edu	37	7	100017406	100017406	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:100017406C>T	uc003uut.2	-	4	377	c.129G>A	c.(127-129)GGG>GGA	p.G43G	ZCWPW1_uc011kjq.1_5'Flank|ZCWPW1_uc003uur.2_5'Flank|ZCWPW1_uc003uus.2_5'UTR|ZCWPW1_uc011kjr.1_Silent_p.G42G|ZCWPW1_uc003uuu.1_Silent_p.G42G|ZCWPW1_uc011kjs.1_5'Flank|ZCWPW1_uc011kjt.1_Silent_p.G42G|ZCWPW1_uc011kju.1_Silent_p.G42G	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	43							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGGAACTGATCCCCGGGGTCT	0.493000													7	89					0	0	0.00198382	0	0
ZAN	7455	broad.mit.edu	37	7	100345200	100345200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:100345200C>T	uc003uwj.2	+	9	1124	c.959C>T	c.(958-960)TCA>TTA	p.S320L	ZAN_uc003uwk.2_Missense_Mutation_p.S320L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	320	MAM 2.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACTCTCTTCTCAGGACAACCT	0.517000													10	66					0	0	0.000442599	0	0
MUC17	140453	broad.mit.edu	37	7	100677796	100677796	+	Silent	SNP	A	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:100677796A>T	uc003uxp.1	+	3	3152	c.3099A>T	c.(3097-3099)CCA>CCT	p.P1033P	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1033	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|15.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCAGCATGCCAACCTCAACTC	0.502000													22	322					0	0	0.000878237	0	0
DNAJC2	27000	broad.mit.edu	37	7	102956276	102956276	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:102956276T>A	uc003vbo.2	-	15	1822	c.1571A>T	c.(1570-1572)AAG>ATG	p.K524M	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_Missense_Mutation_p.K149M|DNAJC2_uc010lix.2_Missense_Mutation_p.K471M|DNAJC2_uc003vbp.2_Missense_Mutation_p.K149M	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	524					'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TTTTTTGAACTTATCAAATGC	0.308000													10	56					0	0	0.00185496	0	0
CNOT4	4850	broad.mit.edu	37	7	135047869	135047869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:135047869G>A	uc011kpy.1	-	11	2002	c.1910C>T	c.(1909-1911)TCC>TTC	p.S637F	CNOT4_uc003vss.2_Missense_Mutation_p.S563F|CNOT4_uc011kpz.1_Missense_Mutation_p.S634F|CNOT4_uc003vst.2_Missense_Mutation_p.S566F	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	309					nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						GGCCTGAAGGGATTTTAGCCA	0.522000													26	162					0	0	0.001512	0	0
CHRM2	1129	broad.mit.edu	37	7	136700038	136700038	+	Missense_Mutation	SNP	G	A	A	rs142493466		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:136700038G>A	uc003vtf.1	+	4	1049	c.426G>A	c.(424-426)ATG>ATA	p.M142I	CHRM2_uc003vtg.1_Missense_Mutation_p.M142I|CHRM2_uc003vtj.1_Missense_Mutation_p.M142I|CHRM2_uc003vtk.1_Missense_Mutation_p.M142I|CHRM2_uc003vtl.1_Missense_Mutation_p.M142I|CHRM2_uc003vtm.1_Missense_Mutation_p.M142I|CHRM2_uc003vti.1_Missense_Mutation_p.M142I|CHRM2_uc003vto.1_Missense_Mutation_p.M142I|CHRM2_uc003vtn.1_Missense_Mutation_p.M142I|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	142	Helical; Name=4; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	TGGCAGGTATGATGATTGCAG	0.502000													20	69					0	0	0.00152264	0	0
CHRM2	1129	broad.mit.edu	37	7	136700128	136700128	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:136700128G>A	uc003vtf.1	+	4	1139	c.516G>A	c.(514-516)GAG>GAA	p.E172E	CHRM2_uc003vtg.1_Silent_p.E172E|CHRM2_uc003vtj.1_Silent_p.E172E|CHRM2_uc003vtk.1_Silent_p.E172E|CHRM2_uc003vtl.1_Silent_p.E172E|CHRM2_uc003vtm.1_Silent_p.E172E|CHRM2_uc003vti.1_Silent_p.E172E|CHRM2_uc003vto.1_Silent_p.E172E|CHRM2_uc003vtn.1_Silent_p.E172E|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	172	Extracellular (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GAACTGTGGAGGATGGGGAGT	0.493000													15	133					0	0	0.000566183	0	0
TTC26	79989	broad.mit.edu	37	7	138853127	138853127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:138853127G>A	uc003vus.2	+	11	1103	c.989G>A	c.(988-990)GGC>GAC	p.G330D	TTC26_uc003vur.3_Missense_Mutation_p.G330D|TTC26_uc011kqn.1_Missense_Mutation_p.G330D|TTC26_uc011kqo.1_Missense_Mutation_p.G299D|TTC26_uc011kqp.1_Missense_Mutation_p.G225D|TTC26_uc003vut.2_Missense_Mutation_p.G190D|TTC26_uc011kqq.1_Missense_Mutation_p.G199D	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	330							binding			ovary(1)	1						GCAGCCCTTGGCCAGGAAATG	0.368000													6	44					0	0	0.000157383	0	0
TRYX3	136541	broad.mit.edu	37	7	141952342	141952342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:141952342C>T	uc003vxb.2	-	4	846	c.526G>A	c.(526-528)GAA>AAA	p.E176K	TRYX3_uc003vxc.3_Missense_Mutation_p.E176K	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	176	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					AGCATATTTTCCGTGATGTTG	0.438000													20	121					0	0	0.00229938	0	0
CLCN1	1180	broad.mit.edu	37	7	143036627	143036627	+	Missense_Mutation	SNP	G	A	A	rs121912807		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:143036627G>A	uc003wcr.1	+	14	1582	c.1495G>A	c.(1495-1497)GGA>AGA	p.G499R	CLCN1_uc011ktc.1_Missense_Mutation_p.G111R	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	499	Helical; (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					AAGGCTGGTAGGAGAAATCAT	0.443000													6	81					0	0	0.00198382	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175582	143175582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:143175582C>T	uc003wdc.1	+	1	617	c.617C>T	c.(616-618)TCT>TTT	p.S206F	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	206	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					TTAATTAATTCTCTGAGGAGG	0.463000													11	41					0	0	0.000673444	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217187	150217187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:150217187C>T	uc003whk.2	+	2	255	c.125C>T	c.(124-126)GCT>GTT	p.A42V		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	42							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCTGCCCAAGCTGTTACCAAG	0.498000													16	33					0	0	0.000566183	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417175	150417175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr7:150417175G>A	uc003whq.2	+	3	170	c.83G>A	c.(82-84)CGG>CAG	p.R28Q	GIMAP1_uc003whp.2_Missense_Mutation_p.R36Q	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	28	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGTCCACGCGGAGGCTCATC	0.557000													19	279					0	0	0.00278032	0	0
DLGAP2	9228	broad.mit.edu	37	8	1581075	1581075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:1581075C>T	uc003wpl.2	+	5	1530	c.1433C>T	c.(1432-1434)GCC>GTC	p.A478V	DLGAP2_uc003wpm.2_Missense_Mutation_p.A478V	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	557					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GCCATGGATGCCCTCGACCTC	0.532000													7	38					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	8	7807617	7807617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:7807617G>A	uc010lro.1	+	5	484	c.202G>A	c.(202-204)GAA>AAA	p.E68K		NM_001039615	NP_001034704			zinc finger protein 705D																		GCTGTGGTGGGAAGGAAGAGT	0.408000													4	10					0	0	0.000274275	0	0
PRSS55	203074	broad.mit.edu	37	8	10388838	10388838	+	Silent	SNP	C	T	T	rs35035741		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:10388838C>T	uc003wta.2	+	3	396	c.381C>T	c.(379-381)AAC>AAT	p.N127N	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	127	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						TGGGGACCAACGACTTAACTA	0.507000													12	163					0	0	0.00136819	0	0
PDGFRL	5157	broad.mit.edu	37	8	17447069	17447069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:17447069C>T	uc003wxr.2	+	2	209	c.148C>T	c.(148-150)CCT>TCT	p.P50S		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	50						extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		GCCCAAAATTCCTAAAATGAA	0.468000													24	138					0	0	0.00278032	0	0
NRG1	3084	broad.mit.edu	37	8	32614018	32614018	+	Missense_Mutation	SNP	C	A	A	rs75779200		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:32614018C>A	uc003xiv.2	+	9	1418	c.901C>A	c.(901-903)CCA>ACA	p.P301T	NRG1_uc011lbf.1_Missense_Mutation_p.P298T|NRG1_uc010lvo.2_Missense_Mutation_p.P298T|NRG1_uc003xiu.2_Missense_Mutation_p.P306T|NRG1_uc003xiw.2_Missense_Mutation_p.P298T|NRG1_uc003xit.2_Missense_Mutation_p.P301T|NRG1_uc010lvr.2_Missense_Mutation_p.P43T|NRG1_uc010lvs.2_Missense_Mutation_p.P43T|NRG1_uc010lvp.2_Missense_Mutation_p.P255T|NRG1_uc010lvq.2_Missense_Mutation_p.P238T|NRG1_uc011lbg.1_Missense_Mutation_p.P147T|NRG1_uc011lbh.1_Missense_Mutation_p.P144T|NRG1_uc003xja.2_Missense_Mutation_p.P112T	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	301	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		CCATCCTAACCCACCCCCCGA	0.498000													10	97					0.000978159	0.00385172	0.000978159	1	0
FGFR1	2260	broad.mit.edu	37	8	38273548	38273548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:38273548G>A	uc003xlp.2	-	14	2636	c.1694C>T	c.(1693-1695)TCC>TTC	p.S565F	FGFR1_uc010lwf.2_RNA|FGFR1_uc011lbo.1_Missense_Mutation_p.S563F|FGFR1_uc011lbp.1_Missense_Mutation_p.S476F|FGFR1_uc011lbq.1_Missense_Mutation_p.S474F|FGFR1_uc010lwk.2_Missense_Mutation_p.S555F	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	565	Cytoplasmic (Potential).|Protein kinase.				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	GTTGCCCTTGGAGGCATACTC	0.607000		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						5	28					0	0	0.000157383	0	0
ADAM2	2515	broad.mit.edu	37	8	39626988	39626988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:39626988G>A	uc003xnj.2	-	12	1210	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	ADAM2_uc003xnk.2_Missense_Mutation_p.P360S|ADAM2_uc011lck.1_Missense_Mutation_p.P379S|ADAM2_uc003xnl.2_Missense_Mutation_p.P253S	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	379	Extracellular (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TTGAAAAAAGGATCTAAGCGA	0.443000													17	79					0	0	0.000566183	0	0
ADAM2	2515	broad.mit.edu	37	8	39627032	39627032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:39627032G>A	uc003xnj.2	-	12	1166	c.1091C>T	c.(1090-1092)TCA>TTA	p.S364L	ADAM2_uc003xnk.2_Missense_Mutation_p.S345L|ADAM2_uc011lck.1_Missense_Mutation_p.S364L|ADAM2_uc003xnl.2_Missense_Mutation_p.S238L	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	364	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CTTCTGCTTTGAAATAAAATG	0.408000													9	34					0	0	0.000442599	0	0
IDO1	3620	broad.mit.edu	37	8	39775406	39775406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:39775406G>A	uc003xnm.2	+	2	214	c.100G>A	c.(100-102)GAT>AAT	p.D34N	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	34					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	AAATCTACCTGATTTTTATAA	0.358000													8	36					0	0	0.000157383	0	0
ST18	9705	broad.mit.edu	37	8	53062383	53062383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:53062383G>A	uc003xqz.2	-	11	2117	c.1961C>T	c.(1960-1962)GCA>GTA	p.A654V	ST18_uc011ldq.1_Missense_Mutation_p.A301V|ST18_uc011ldr.1_Missense_Mutation_p.A619V|ST18_uc011lds.1_Missense_Mutation_p.A559V|ST18_uc003xra.2_Missense_Mutation_p.A654V|ST18_uc003xrb.2_Missense_Mutation_p.A654V	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	654						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				ATAGAATGCTGCATTGACCAG	0.458000													10	85					0	0	0.000442599	0	0
SDR16C5	195814	broad.mit.edu	37	8	57214052	57214052	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:57214052T>G	uc003xsy.1	-	7	1555	c.917A>C	c.(916-918)AAG>ACG	p.K306T	SDR16C5_uc010lyk.1_3'UTR|SDR16C5_uc010lyl.1_Missense_Mutation_p.K262T	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	306					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GAGCTTCTTCTTTTGGTCAAC	0.398000													19	247					0	0	0.00188189	0	0
NSMAF	8439	broad.mit.edu	37	8	59512321	59512321	+	Missense_Mutation	SNP	G	A	A	rs140579437	byFrequency	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:59512321G>A	uc003xtt.2	-	18	1655	c.1441C>T	c.(1441-1443)CCT>TCT	p.P481S	NSMAF_uc011lee.1_Missense_Mutation_p.P512S	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	481	BEACH.				ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				GAAGCCCAAGGGGGAAGCTCC	0.418000													18	79					0	0	0.00152264	0	0
CPA6	57094	broad.mit.edu	37	8	68396082	68396082	+	Nonsense_Mutation	SNP	C	T	T	rs139178030	byFrequency	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:68396082C>T	uc003xxq.3	-	8	1015	c.759G>A	c.(757-759)TGG>TGA	p.W253*	CPA6_uc003xxr.3_Nonsense_Mutation_p.W105*|CPA6_uc003xxs.2_Nonsense_Mutation_p.W253*	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	253					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			TTGTTTTTCTCCAAAATCGAT	0.398000													14	162					0	0	0.00244969	0	0
PREX2	80243	broad.mit.edu	37	8	69020443	69020443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:69020443C>T	uc003xxv.1	+	24	2842	c.2815C>T	c.(2815-2817)CAT>TAT	p.H939Y	PREX2_uc011lez.1_Missense_Mutation_p.H874Y	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	939					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TACCAACTGCCATGTCAATGT	0.428000													5	56					0	0	0.000602214	0	0
PREX2	80243	broad.mit.edu	37	8	69058575	69058575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:69058575C>T	uc003xxv.1	+	34	4246	c.4219C>T	c.(4219-4221)CTT>TTT	p.L1407F		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1407					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TCATCCTGTTCTTTTTGCACA	0.318000													10	66					0	0	0.000978159	0	0
C8orf34	116328	broad.mit.edu	37	8	69434034	69434034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:69434034G>A	uc010lyz.2	+	6	557	c.508G>A	c.(508-510)GAA>AAA	p.E170K	C8orf34_uc010lyy.1_Missense_Mutation_p.E170K|C8orf34_uc003xyb.2_Missense_Mutation_p.E145K	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	170					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			TTCTCTTCAGGAAACAGTGAC	0.388000													6	51					0	0	0.000157383	0	0
NCOA2	10499	broad.mit.edu	37	8	71036964	71036964	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:71036964G>A	uc003xyn.1	-	20	4215	c.4053C>T	c.(4051-4053)TCC>TCT	p.S1351S	NCOA2_uc011lfb.1_Silent_p.S439S	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1351					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			CATTTATGTCGGAGGGGGCCT	0.562000			T	RUNXBP2	AML								13	60					0	0	0.00185496	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616956	77616956	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:77616956C>T	uc003yav.2	+	2	1020	c.633C>T	c.(631-633)TTC>TTT	p.F211F	ZFHX4_uc003yat.1_Silent_p.F211F|ZFHX4_uc003yau.1_Silent_p.F211F|ZFHX4_uc003yaw.1_Silent_p.F211F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	211						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATCAGGCTTTCCCAAATACCT	0.463000										HNSCC(33;0.089)			10	44					0	0	0.000978159	0	0
PAG1	55824	broad.mit.edu	37	8	81897606	81897606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:81897606G>A	uc003ybz.2	-	7	992	c.281C>T	c.(280-282)TCA>TTA	p.S94L		NM_018440	NP_060910	Q9NWQ8	PAG1_HUMAN	phosphoprotein associated with glycosphingolipid	94	Cytoplasmic (Potential).				epidermal growth factor receptor signaling pathway|intracellular signal transduction|T cell receptor signaling pathway	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding|SH3/SH2 adaptor activity				0	Lung NSC(7;5.76e-06)|all_lung(9;2e-05)		BRCA - Breast invasive adenocarcinoma(6;0.0567)|Epithelial(68;0.0634)|all cancers(69;0.197)			ACTGTCCTCTGAAAGAACTAA	0.428000													6	27					0	0	0.00198382	0	0
CNGB3	54714	broad.mit.edu	37	8	87666270	87666270	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:87666270C>T	uc003ydx.2	-	7	919	c.873G>A	c.(871-873)AGG>AGA	p.R291R	CNGB3_uc010maj.2_Silent_p.R153R	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	291	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TGTAGTGTTTCCTTAGCTCAT	0.254000													12	81					0	0	0.000308642	0	0
KIAA1429	25962	broad.mit.edu	37	8	95504939	95504939	+	Silent	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:95504939G>C	uc003ygo.1	-	21	4762	c.4749C>G	c.(4747-4749)ACC>ACG	p.T1583T	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1583					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TAGTAGTCTTGGTTCTTCCTG	0.368000													10	125					0	0	0.00136819	0	0
POP1	10940	broad.mit.edu	37	8	99153020	99153020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:99153020C>T	uc003yij.3	+	11	1598	c.1498C>T	c.(1498-1500)CCG>TCG	p.P500S	POP1_uc011lgv.1_Missense_Mutation_p.P500S|POP1_uc003yik.2_Missense_Mutation_p.P500S	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	500					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			AGCAGAAATTCCGGCAGGTAC	0.368000													10	71					0	0	0.000978159	0	0
FZD6	8323	broad.mit.edu	37	8	104337156	104337156	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:104337156C>T	uc003ylh.2	+	4	1106	c.822C>T	c.(820-822)GTC>GTT	p.V274V	FZD6_uc003yli.2_Silent_p.V274V|FZD6_uc003ylj.2_Silent_p.V274V|FZD6_uc011lhn.1_Silent_p.V240V|FZD6_uc011lho.1_Intron|FZD6_uc011lhp.1_Silent_p.V219V	NM_003506	NP_003497	O60353	FZD6_HUMAN	frizzled 6 isoform a precursor	274	Extracellular (Potential).				angiogenesis|axonogenesis|cell proliferation in midbrain|establishment of planar polarity|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|inner ear morphogenesis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|neural tube closure|non-canonical Wnt receptor signaling pathway	apical part of cell|apicolateral plasma membrane|cytoplasm|integral to plasma membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.86e-05)|STAD - Stomach adenocarcinoma(118;0.197)			ACACTGTTGTCCTAGGCTCTC	0.423000													15	50					0	0	0.00244969	0	0
ZFPM2	23414	broad.mit.edu	37	8	106811101	106811101	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:106811101C>T	uc003ymd.2	+	7	912	c.889C>T	c.(889-891)CTG>TTG	p.L297L	ZFPM2_uc011lhs.1_Silent_p.L28L|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	297	C2H2-type 1.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GATTTCCAGCCTGTGCCCCTT	0.493000													20	131					0	0	0.00229938	0	0
RSPO2	340419	broad.mit.edu	37	8	108913384	108913384	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:108913384G>A	uc003yms.2	-	6	1309	c.651C>T	c.(649-651)AAC>AAT	p.N217N	RSPO2_uc003ymq.2_Silent_p.N150N|RSPO2_uc003ymr.2_Silent_p.N153N	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	217					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			tctttttcttgttcctcttct	0.348000													15	45					0	0	0.00244969	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110503254	110503254	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:110503254C>T	uc003yne.2	+	61	10142	c.10038C>T	c.(10036-10038)TTC>TTT	p.F3346F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3346	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACCATGGCTTCTCTCCAGCAA	0.348000										HNSCC(38;0.096)			12	93					0	0	0.000978159	0	0
CSMD3	114788	broad.mit.edu	37	8	113348948	113348948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:113348948C>T	uc003ynu.2	-	44	7111	c.6952G>A	c.(6952-6954)GGG>AGG	p.G2318R	CSMD3_uc003yns.2_Missense_Mutation_p.G1520R|CSMD3_uc003ynt.2_Missense_Mutation_p.G2278R|CSMD3_uc011lhx.1_Missense_Mutation_p.G2214R|CSMD3_uc003ynw.1_Missense_Mutation_p.G29R	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2318	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATGCCATTCCCAGGGGGTACT	0.353000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			28	145					0	0	0.00209593	0	0
FAM83A	84985	broad.mit.edu	37	8	124206364	124206364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:124206364G>A	uc003ypv.2	+	4	2763	c.749G>A	c.(748-750)AGA>AAA	p.R250K	FAM83A_uc003ypw.2_Missense_Mutation_p.R250K|FAM83A_uc003ypy.2_Missense_Mutation_p.R194K|FAM83A_uc003ypx.2_Missense_Mutation_p.R250K|FAM83A_uc003ypz.2_Missense_Mutation_p.R250K	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	250										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			TCGGACTGGAGATTTGTCCTG	0.512000													13	85					0	0	0.00185496	0	0
ADCY8	114	broad.mit.edu	37	8	131826335	131826335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:131826335C>T	uc003ytd.3	-	14	3149	c.2893G>A	c.(2893-2895)GAG>AAG	p.E965K	ADCY8_uc010mds.2_Missense_Mutation_p.E834K	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	965	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CGGTCCTTCTCTAGGAAATGG	0.522000										HNSCC(32;0.087)			17	73					0	0	0.00152264	0	0
TG	7038	broad.mit.edu	37	8	133899499	133899499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:133899499G>A	uc003ytw.2	+	9	1923	c.1882G>A	c.(1882-1884)GAT>AAT	p.D628N		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	628	Thyroglobulin type-1 5.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AAGCTATGAGGATGTCCAATG	0.522000													12	93					0	0	0.00185496	0	0
EPPK1	83481	broad.mit.edu	37	8	144941668	144941668	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr8:144941668C>T	uc003zaa.1	-	1	5767	c.5754G>A	c.(5752-5754)AGG>AGA	p.R1918R		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1918	Plectin 31.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGAGCTCCTTCCTGCTGGCCT	0.657000													5	30					0	0	0.000602214	0	0
CNTFR	1271	broad.mit.edu	37	9	34556385	34556385	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:34556385G>A	uc003zup.1	-	7	917	c.636C>T	c.(634-636)GCC>GCT	p.A212A	CNTFR_uc003zuq.1_Silent_p.A212A	NM_147164	NP_671693	P26992	CNTFR_HUMAN	ciliary neurotrophic factor receptor	212	Fibronectin type-III 2.				nervous system development	anchored to membrane|extrinsic to membrane|plasma membrane	ciliary neurotrophic factor receptor activity|receptor binding			ovary(3)|central_nervous_system(1)|skin(1)	5	all_epithelial(49;0.0899)		STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.00494)		GCACTGGCCGGGCTACCACAT	0.552000													5	57					0	0	0.00116845	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39171462	39171462	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:39171462G>A	uc004abi.2	-	8	1476	c.1237C>T	c.(1237-1239)CGA>TGA	p.R413*	CNTNAP3_uc004abj.2_Nonsense_Mutation_p.R413*|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Nonsense_Mutation_p.R413*|CNTNAP3_uc011lqs.1_Nonsense_Mutation_p.R413*|CNTNAP3_uc004abl.1_Nonsense_Mutation_p.R325*	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	413	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GAACCACGTCGAAGTTCGCCG	0.498000													13	73					0	0	0.00136819	0	0
TRPM3	80036	broad.mit.edu	37	9	73255515	73255515	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:73255515G>A	uc004aid.2	-	10	1651	c.1407C>T	c.(1405-1407)ATC>ATT	p.I469I	TRPM3_uc004ahu.2_Silent_p.I299I|TRPM3_uc004ahv.2_Silent_p.I299I|TRPM3_uc004ahw.2_Silent_p.I341I|TRPM3_uc004ahx.2_Silent_p.I316I|TRPM3_uc004ahy.2_Silent_p.I341I|TRPM3_uc004ahz.2_Silent_p.I316I|TRPM3_uc004aia.2_Silent_p.I316I|TRPM3_uc004aib.2_Silent_p.I316I|TRPM3_uc004aic.2_Silent_p.I469I|TRPM3_uc010mor.2_Silent_p.I469I	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	494	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GGCTGCGAGCGATGTCGACTC	0.502000											OREG0019249	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	35					0	0	0.00116845	0	0
ECM2	1842	broad.mit.edu	37	9	95284988	95284988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:95284988C>T	uc004ash.2	-	2	226	c.161G>A	c.(160-162)GGA>GAA	p.G54E	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Missense_Mutation_p.G54E|ECM2_uc011lty.1_Missense_Mutation_p.G54E|ECM2_uc004asg.2_Missense_Mutation_p.G54E|ECM2_uc011ltz.1_Missense_Mutation_p.G54E|ECM2_uc004asi.2_Missense_Mutation_p.G54E	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	54					cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						TTGCTGAATTCCAAGCTGTCT	0.373000													9	139					0	0	0.00136819	0	0
PHF2	5253	broad.mit.edu	37	9	96437255	96437255	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:96437255C>T	uc004aub.2	+	19	2820	c.2673C>T	c.(2671-2673)TCC>TCT	p.S891S	PHF2_uc011lug.1_Silent_p.S774S|PHF2_uc004auc.2_Silent_p.S311S	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	891					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		TCTTTAAGTCCCGGTCGAAGA	0.597000													11	64					0	0	0.000422831	0	0
ZNF510	22869	broad.mit.edu	37	9	99522716	99522716	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:99522716G>A	uc004awn.1	-	6	585	c.396C>T	c.(394-396)ATC>ATT	p.I132I	ZNF510_uc004awo.1_Silent_p.I132I	NM_014930	NP_055745	Q9Y2H8	ZN510_HUMAN	zinc finger protein 510	132					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				GTTTGTCTTTGATTTTCTTGT	0.358000													23	122					0	0	0.000586117	0	0
OR13C8	138802	broad.mit.edu	37	9	107331487	107331487	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:107331487C>T	uc011lvo.1	+	1	39	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAGAATTTTTCCTGGTAGGGC	0.413000													14	86					0	0	0.00185496	0	0
OR13C8	138802	broad.mit.edu	37	9	107331700	107331700	+	Silent	SNP	C	T	T	rs150711746	byFrequency	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:107331700C>T	uc011lvo.1	+	1	252	c.252C>T	c.(250-252)AGC>AGT	p.S84S		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTCTTGCCAGCTTTCTGGCAG	0.458000													21	197					0	0	0.00047179	0	0
MUSK	4593	broad.mit.edu	37	9	113449458	113449458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:113449458G>A	uc004bey.2	+	3	366	c.268G>A	c.(268-270)GAA>AAA	p.E90K	MUSK_uc004bex.2_Missense_Mutation_p.E90K	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	90	Ig-like 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CCTGAGTGTGGAAGACAGTGA	0.522000													17	122					0	0	0.00074312	0	0
DAB2IP	153090	broad.mit.edu	37	9	124521267	124521267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:124521267C>T	uc004bln.2	+	5	592	c.523C>T	c.(523-525)CCC>TCC	p.P175S	DAB2IP_uc004blo.2_Missense_Mutation_p.P79S	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	203	C2.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						AGCGGTGCATCCCAACAAGGT	0.572000													5	35					0	0	0.000602214	0	0
CRB2	286204	broad.mit.edu	37	9	126132513	126132513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:126132513C>T	uc004bnx.1	+	7	1273	c.1181C>T	c.(1180-1182)TCT>TTT	p.S394F	CRB2_uc004bnw.1_Missense_Mutation_p.S394F	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	394	Extracellular (Potential).|EGF-like 8; calcium-binding (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CGCGACTGTTCTGTGCAGCTC	0.637000													5	25					0	0	0.00116845	0	0
SARDH	1757	broad.mit.edu	37	9	136573510	136573510	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:136573510G>A	uc004cep.3	-	11	1503	c.1369C>T	c.(1369-1371)CGA>TGA	p.R457*	SARDH_uc004ceo.2_Nonsense_Mutation_p.R457*|SARDH_uc011mdn.1_Nonsense_Mutation_p.R457*|SARDH_uc011mdo.1_Nonsense_Mutation_p.R289*	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	457					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CTTCGCTCTCGGATCCAGCGG	0.657000													7	109					0	0	0.000274275	0	0
SHROOM2	357	broad.mit.edu	37	X	9864373	9864373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:9864373C>T	uc004csu.1	+	4	2515	c.2425C>T	c.(2425-2427)CCC>TCC	p.P809S		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	809					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CAAACCTGTTCCCCAGAGGCC	0.602000													15	25					0	0	0.000566183	0	0
WWC3	55841	broad.mit.edu	37	X	10085262	10085262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:10085262C>T	uc004csx.3	+	11	1361	c.1163C>T	c.(1162-1164)TCG>TTG	p.S388L	WWC3_uc010nds.2_Missense_Mutation_p.S52L|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	388	Ser-rich.									ovary(4)	4						TCCCTGAGCTCGGTCAGCTTC	0.667000													19	27					0	0	0.00278032	0	0
AMELX	265	broad.mit.edu	37	X	11316686	11316686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:11316686G>A	uc004cut.2	+	5	231	c.163G>A	c.(163-165)GAG>AAG	p.E55K	ARHGAP6_uc004cup.1_Intron|ARHGAP6_uc004cuo.1_Intron|ARHGAP6_uc004cur.1_Intron|ARHGAP6_uc004cun.1_Intron|ARHGAP6_uc011mif.1_Intron|AMELX_uc004cus.2_Missense_Mutation_p.E69K|AMELX_uc004cuu.2_Missense_Mutation_p.E39K	NM_001142	NP_001133	Q99217	AMELX_HUMAN	amelogenin (X chromosome) isoform 1 precursor	55					cell adhesion|cell proliferation|chondrocyte differentiation|enamel mineralization|epithelial to mesenchymal transition|ion homeostasis|odontogenesis of dentine-containing tooth|osteoblast differentiation|positive regulation of collagen biosynthetic process|positive regulation of tooth mineralization|signal transduction	proteinaceous extracellular matrix	cell surface binding|growth factor activity|hydroxyapatite binding|identical protein binding|structural constituent of tooth enamel				0						CTATGGTTACGAGCCCATGGG	0.547000													6	56					0	0	0.000157383	0	0
PHEX	5251	broad.mit.edu	37	X	22095764	22095764	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:22095764T>C	uc004dah.2	+	5	810	c.607T>C	c.(607-609)TTC>CTC	p.F203L	PHEX_uc011mjr.1_Missense_Mutation_p.F203L|PHEX_uc011mjs.1_Missense_Mutation_p.F106L	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	203	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						CAATTCTGTGTTCATCCGTTT	0.428000													41	103					0	0	0.0025221	0	0
PCYT1B	9468	broad.mit.edu	37	X	24605402	24605402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:24605402G>A	uc004dbi.2	-	5	754	c.521C>T	c.(520-522)TCC>TTC	p.S174F	PCYT1B_uc004dbk.3_Missense_Mutation_p.S174F|PCYT1B_uc004dbj.2_Missense_Mutation_p.S156F	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta	174	Catalytic (Potential).					endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	GCCAGCAGAGGAATACGGAAT	0.463000													9	17					0	0	0.000978159	0	0
FAM47A	158724	broad.mit.edu	37	X	34148754	34148754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:34148754G>A	uc004ddg.2	-	1	1675	c.1642C>T	c.(1642-1644)CCC>TCC	p.P548S		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	548										ovary(4)|central_nervous_system(1)	5						CGACTCTTGGGAAGCTCCGGG	0.612000													20	31					0	0	0.00278032	0	0
PAGE2B	389860	broad.mit.edu	37	X	55103076	55103076	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:55103076G>A	uc004due.2	+	3	211	c.159G>A	c.(157-159)GGG>GGA	p.G53G		NM_001015038	NP_001015038	Q5JRK9	GGEE3_HUMAN	P antigen family, member 2B	53											0						CACCTAGTGGGGAGATCGAAA	0.458000													8	19					0	0	0.000274275	0	0
FAM123B	139285	broad.mit.edu	37	X	63410310	63410310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:63410310G>A	uc004dvo.2	-	2	3130	c.2857C>T	c.(2857-2859)CCA>TCA	p.P953S		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	953	Pro-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						TAGGCCCCTGGGGGTTCAGTA	0.592000													15	14					0	0	0.000422831	0	0
SLC7A3	84889	broad.mit.edu	37	X	70148725	70148725	+	Silent	SNP	G	A	A	rs141540446		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:70148725G>A	uc004dyn.2	-	3	656	c.498C>T	c.(496-498)TTC>TTT	p.F166F	SLC7A3_uc004dyo.2_Silent_p.F166F	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	166	Helical; Name=4; (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CCAAAGCAAAGAAATCTGGAT	0.547000													10	20					0	0	0.000673444	0	0
XIST	7503	broad.mit.edu	37	X	73065748	73065748	+	RNA	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:73065748G>A	uc004ebm.1	-	1		c.6841C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GGGCCTTGGTGATCAGCACCC	0.507000													28	57					0	0	0.00209593	0	0
FGF16	8823	broad.mit.edu	37	X	76709678	76709678	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:76709678G>C	uc011mqp.1	+	1	305	c.32G>C	c.(31-33)GGG>GCG	p.G11A		NM_003868	NP_003859	O43320	FGF16_HUMAN	fibroblast growth factor 16	102					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|metabolic process|organ morphogenesis|response to temperature stimulus	extracellular space	growth factor activity			lung(1)	1						CTGGCTGTGGGGCTGATCAGC	0.453000													4	16					0	0	0.00024832	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913684	77913684	+	Silent	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:77913684C>T	uc004edc.1	-	2	530	c.234G>A	c.(232-234)AAG>AAA	p.K78K		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	78	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						ACTCTGGGGTCTTTTGGGCCT	0.612000													3	11					0	0	6.4e-05	0	0
POF1B	79983	broad.mit.edu	37	X	84561251	84561251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:84561251C>T	uc004eer.2	-	12	1399	c.1253G>A	c.(1252-1254)AGA>AAA	p.R418K	POF1B_uc004ees.2_Missense_Mutation_p.R418K	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	418	Potential.						actin binding				0						TTCTTTTAGTCTGTATTCCAT	0.338000													19	43					0	0	0.00074312	0	0
H2BFWT	158983	broad.mit.edu	37	X	103268042	103268042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:103268042C>T	uc004elr.2	-	1	215	c.191G>A	c.(190-192)CGA>CAA	p.R64Q		NM_001002916	NP_001002916	Q7Z2G1	H2BWT_HUMAN	H2B histone family, member W, testis-specific	64					nucleosome assembly	nuclear membrane|nucleosome	DNA binding			ovary(1)	1						ATGGCGCCCTCGCTTCCTCTG	0.637000													10	21					0	0	0.000442599	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450602	105450602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:105450602G>A	uc004emf.1	+	4	1826	c.1177G>A	c.(1177-1179)GGA>AGA	p.G393R	MUM1L1_uc004emg.1_Missense_Mutation_p.G393R	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	393	PWWP.									ovary(2)|pancreas(1)|skin(1)	4						GTTTGAAACAGGAATGATAGT	0.368000													7	24					0	0	0.00198382	0	0
COL4A6	1288	broad.mit.edu	37	X	107417830	107417830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:107417830C>T	uc004enw.3	-	31	3084	c.2981G>A	c.(2980-2982)CGA>CAA	p.R994Q	COL4A6_uc004env.3_Missense_Mutation_p.R993Q|COL4A6_uc011msn.1_Missense_Mutation_p.R993Q|COL4A6_uc010npk.2_Missense_Mutation_p.R993Q	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	994	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding	p.P994H(1)		ovary(6)|urinary_tract(1)|large_intestine(1)	8						TGGTCCAGGTCGACCAGCCTC	0.547000									Alport_syndrome_with_Diffuse_Leiomyomatosis				9	21					0	0	0.00136819	0	0
SLC6A14	11254	broad.mit.edu	37	X	115574866	115574866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:115574866G>A	uc004eqi.2	+	5	668	c.564G>A	c.(562-564)ATG>ATA	p.M188I	SLC6A14_uc011mtm.1_RNA	NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	188	Extracellular (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	TCATCCAAATGAATAAAAGCT	0.353000													19	20					0	0	0.00074312	0	0
SLC6A14	11254	broad.mit.edu	37	X	115586625	115586625	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:115586625T>A	uc004eqi.2	+	12	1711	c.1607T>A	c.(1606-1608)CTT>CAT	p.L536H		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	536	Helical; Name=11; (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	ACGCCTATCCTTTTGATTGTA	0.338000													24	42					0	0	0.000720815	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117960056	117960056	+	Silent	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:117960056G>A	uc004equ.2	+	4	1322	c.849G>A	c.(847-849)CAG>CAA	p.Q283Q		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	283					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						TGGAGTCTCAGGACCCTCCAC	0.572000													20	33					0	0	0.00229938	0	0
CT47B1	643311	broad.mit.edu	37	X	120008798	120008798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:120008798C>T	uc011muc.1	-	1	982	c.727G>A	c.(727-729)GAA>AAA	p.E243K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	243											0						GCGGCCGGTtcctctgtggcc	0.542000													17	59					0	0	0.000958276	0	0
MAP7D3	79649	broad.mit.edu	37	X	135313943	135313943	+	Silent	SNP	T	C	C			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:135313943T>C	uc004ezt.2	-	8	1264	c.1173A>G	c.(1171-1173)GAA>GAG	p.E391E	MAP7D3_uc004ezs.2_Silent_p.E355E|MAP7D3_uc011mwc.1_Silent_p.E373E|MAP7D3_uc010nsa.1_Silent_p.E349E	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	391						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					CCGGGGGTGCTTCCAGGCTCG	0.617000													3	48					0	0	0.00024832	0	0
GPR112	139378	broad.mit.edu	37	X	135430025	135430025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:135430025C>T	uc004ezu.1	+	6	4451	c.4160C>T	c.(4159-4161)CCA>CTA	p.P1387L	GPR112_uc010nsb.1_Missense_Mutation_p.P1182L|GPR112_uc010nsc.1_Missense_Mutation_p.P1154L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1387	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGTGCCCTTCCAGCATATACT	0.453000													49	79					0	0	0.000781405	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290791	141290791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:141290791G>A	uc004fbu.1	-	3	1331	c.983C>T	c.(982-984)TCC>TTC	p.S328F		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	328	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GGATGGAAAGGAACTAGGAAC	0.458000										HNSCC(46;0.14)			30	50					0	0	0.00178596	0	0
AFF2	2334	broad.mit.edu	37	X	148038127	148038127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:148038127G>A	uc004fcp.2	+	11	3031	c.2552G>A	c.(2551-2553)GGC>GAC	p.G851D	AFF2_uc004fcq.2_Missense_Mutation_p.G841D|AFF2_uc004fcr.2_Missense_Mutation_p.G812D|AFF2_uc011mxb.1_Missense_Mutation_p.G816D|AFF2_uc004fcs.2_Missense_Mutation_p.G818D|AFF2_uc011mxc.1_Missense_Mutation_p.G492D	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	851					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GCCCCTAAGGGCAAACGTAAG	0.517000													11	30					0	0	0.00136819	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482452	152482452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:152482452G>A	uc004fhf.2	-	3	779	c.559C>T	c.(559-561)CAG>TAG	p.Q187*		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	187	MAGE.					cytoplasm|plasma membrane				central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGCATGATCTGATTATCACCC	0.542000													25	54					0	0	0.000720815	0	0
ATP2B3	492	broad.mit.edu	37	X	152818590	152818590	+	Missense_Mutation	SNP	G	A	A	rs139853349	byFrequency	TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:152818590G>A	uc004fht.1	+	11	2047	c.1921G>A	c.(1921-1923)GAT>AAT	p.D641N	ATP2B3_uc004fhs.1_Missense_Mutation_p.D641N	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	641	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GATGGCTTGCGATGGCCTCCG	0.607000													16	22					0	0	0.00074312	0	0
GDI1	2664	broad.mit.edu	37	X	153668320	153668320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:153668320C>T	uc004fli.3	+	5	763	c.421C>T	c.(421-423)CGC>TGC	p.R141C	GDI1_uc011mzo.1_Missense_Mutation_p.R141C|GDI1_uc004flj.2_5'Flank	NM_001493	NP_001484	P31150	GDIA_HUMAN	GDP dissociation inhibitor 1	141					protein transport|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|midbody	GTPase activator activity|protein binding				0	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ACGGCGCTTCCGCAAGTTCCT	0.552000													65	130					0	0	0.000781405	0	0
SLC10A3	8273	broad.mit.edu	37	X	153716343	153716343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chrX:153716343G>A	uc004flq.2	-	3	1201	c.937C>T	c.(937-939)CAT>TAT	p.H313Y	UBL4A_uc004flo.2_5'Flank|SLC10A3_uc004flr.2_Missense_Mutation_p.H284Y|SLC10A3_uc004flp.2_Missense_Mutation_p.H313Y	NM_001142392	NP_001135864	P09131	P3_HUMAN	solute carrier family 10, member 3 isoform 1	313					organic anion transport	integral to membrane	bile acid:sodium symporter activity			ovary(1)|skin(1)	2	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGCGTCTCATGGATGCTGAGC	0.597000													18	28					0	0	0.000958276	0	0
MTL5	9633	broad.mit.edu	37	11	68480836	68480836	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr11:68480836delT	uc001ooc.2	-	8	1200	c.1060delA	c.(1060-1062)ATTfs	p.I354fs		NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	354					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			CCCTTCCCAATTTTTGGCTGG	0.473													7	392	---	---	---	---					
VEZT	55591	broad.mit.edu	37	12	95689830	95689830	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr12:95689830delT	uc001tdz.2	+	11	1732	c.1627delT	c.(1627-1629)TTAfs	p.L543fs	VEZT_uc009ztb.1_RNA|VEZT_uc009ztc.1_5'UTR|VEZT_uc001tdy.2_RNA	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	543						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						TTTTCAGGAATTAGAAGCTTA	0.308													2	4	---	---	---	---					
TRPM1	4308	broad.mit.edu	37	15	31341630	31341631	+	Frame_Shift_Ins	INS	-	CTCCGTTT	CTCCGTTT			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr15:31341630_31341631insCTCCGTTT	uc001zfm.2	-	12	1581_1582	c.1453_1454insAAACGGAG	c.(1453-1455)GTGfs	p.V485fs	TRPM1_uc010azy.2_Frame_Shift_Ins_p.V392fs|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	485	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		TTGCATGTTCACTCCGTTTTCA	0.495													7	127	---	---	---	---					
TAOK2	9344	broad.mit.edu	37	16	29990310	29990310	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr16:29990310delT	uc002dva.1	+	6	1151	c.368delT	c.(367-369)CTTfs	p.L123fs	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Frame_Shift_Del_p.L123fs|TAOK2_uc002dvc.1_Frame_Shift_Del_p.L123fs|TAOK2_uc010bzm.1_Frame_Shift_Del_p.L123fs|TAOK2_uc002dvd.1_5'Flank	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	123	Protein kinase.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						AAGAAACCCCTTCAGGAGGTA	0.572													32	129	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684394	26684395	+	Splice_Site	INS	-	G	G	rs113730440		TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr17:26684394_26684395insG	uc002haz.2	-	2	210	c.78_splice	c.e2+1	p.W26_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AGAGCGGCTTTGCCACCGGGCC	0.762													3	5	---	---	---	---					
PHF5A	84844	broad.mit.edu	37	22	41863532	41863532	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr22:41863532delG	uc003bab.2	-	3	214	c.163delC	c.(163-165)CAGfs	p.Q55fs	ACO2_uc003bac.2_5'Flank|ACO2_uc003bad.2_5'Flank	NM_032758	NP_116147	Q7RTV0	PHF5A_HUMAN	PHD-finger 5A	55					nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent	nuclear speck|U12-type spliceosomal complex|U2 snRNP	DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGCGCCCCTGGTAAGATCCA	0.498													8	80	---	---	---	---					
SMAP1	60682	broad.mit.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr6:71508370delA	uc003pfr.2	+	6	754	c.506delA	c.(505-507)GAAfs	p.E169fs	SMAP1_uc011dxy.1_RNA|SMAP1_uc003pfs.2_Frame_Shift_Del_p.E142fs|SMAP1_uc010kao.2_Frame_Shift_Del_p.E142fs|SMAP1_uc010kap.2_Frame_Shift_Del_p.E159fs	NM_001044305	NP_001037770	Q8IYB5	SMAP1_HUMAN	stromal membrane-associated GTPase-activating	169					regulation of ARF GTPase activity	plasma membrane	ARF GTPase activator activity|zinc ion binding				0						aaagaaaaggaaaaaaaaaag	0.234													3	5	---	---	---	---					
ABL1	25	broad.mit.edu	37	9	133759490	133759492	+	In_Frame_Del	DEL	AAG	-	-			TCGA-EE-A29G-06A-12D-A196-08	TCGA-EE-A29G-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4e9f07ec-7d32-4911-b6f8-d33f2f5b07dd	690d6c02-e369-4216-9557-5cf4d697ebb0	g.chr9:133759490_133759492delAAG	uc004bzw.2	+	11	1816_1818	c.1813_1815delAAG	c.(1813-1815)AAGdel	p.K609del	ABL1_uc004bzv.2_In_Frame_Del_p.K628del	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	609	Nuclear localization signal 1 (Potential).|Poly-Lys.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	CGCCTTGATCAAGAAGAAGAAGA	0.616			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								10	146	---	---	---	---					
