Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CASZ1	54897	broad.mit.edu	37	1	10713648	10713648	+	Silent	SNP	A	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:10713648A>C	uc001aro.2	-	11	2786	c.2466T>G	c.(2464-2466)GGT>GGG	p.G822G	CASZ1_uc001arp.1_Silent_p.G822G|CASZ1_uc009vmx.2_Silent_p.G846G	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	822					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		ACGACACGGCACCCAGGAGGC	0.711													14	21					0	0	0.002450	0	0
AADACL3	126767	broad.mit.edu	37	1	12785267	12785267	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:12785267C>T	uc009vnn.1	+	4	590	c.357C>T	c.(355-357)TCC>TCT	p.S119S	AADACL3_uc001aug.1_Silent_p.S49S	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	119							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTGAAGTCCCTGGATGCAT	0.512													26	69					0	0	0.006320	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835238	12835238	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:12835238G>A	uc001aui.2	+	1	255	c.228G>A	c.(226-228)GAG>GAA	p.E76E		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	76										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTAATCTAGAGATCTTTCGAG	0.577													22	45					0	0	0.003330	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12837676	12837676	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:12837676G>A	uc001aui.2	+	3	1413	c.1386G>A	c.(1384-1386)AGG>AGA	p.R462R		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	462										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTGGCATCAGGGCCTCCTATG	0.502													21	64					0	0	0.002299	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12853576	12853576	+	Missense_Mutation	SNP	G	A	A	rs1063759		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:12853576G>A	uc001auj.1	+	2	303	c.200G>A	c.(199-201)GGA>GAA	p.G67E		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	67											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCCTCTGGGATCACTGATG	0.542													38	89					0	0	0.002852	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855633	12855633	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:12855633C>T	uc001auj.1	+	4	1016	c.913C>T	c.(913-915)CTA>TTA	p.L305L		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	305											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTATGGCTACCTATTGGAAGA	0.473													26	61					0	0	0.003755	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12918948	12918948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:12918948G>A	uc001aum.1	+	2	171	c.84G>A	c.(82-84)ATG>ATA	p.M28I		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	28											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCTGCCATGGAGGAGCTGC	0.607													33	63					0	0	0.002445	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12941848	12941848	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:12941848C>T	uc001aun.2	-	3	773	c.702G>A	c.(700-702)AGG>AGA	p.R234R		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	234										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCTGAAGATTCCTCATGTGGC	0.488													96	202					0	0	0.003610	0	0
CASP9	842	broad.mit.edu	37	1	15819453	15819453	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:15819453G>A	uc001awn.2	-	9	1331	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F	CASP9_uc001awm.1_3'UTR|CASP9_uc001awo.2_Silent_p.F262F|CASP9_uc001awp.2_Silent_p.F256F|CASP9_uc009voi.2_Silent_p.F256F|CASP9_uc010obm.1_Silent_p.F329F|CASP9_uc001awq.2_Silent_p.F329F	NM_001229	NP_001220	P55211	CASP9_HUMAN	caspase 9 isoform alpha preproprotein	412					activation of caspase activity by cytochrome c|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol	cysteine-type endopeptidase activity|enzyme activator activity|protein binding			central_nervous_system(1)|kidney(1)	2		Breast(348;0.000207)|all_lung(284;0.000211)|Colorectal(325;0.000259)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;8.49e-07)|COAD - Colon adenocarcinoma(227;4.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00013)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00763)|READ - Rectum adenocarcinoma(331;0.0655)		ATGTTTTAAAGAAAAGTTTTT	0.483													34	63					0	0	0.004878	0	0
MST1P9	11223	broad.mit.edu	37	1	17085373	17085373	+	Missense_Mutation	SNP	C	T	T	rs2092130	by1000genomes	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:17085373C>T	uc010ock.1	-	10	1318	c.1318G>A	c.(1318-1320)GGG>AGG	p.G440R	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.M1I	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TGGCTATCCCCATCTGGGTCT	0.602													3	27					0	0	0.000602	0	0
CROCC	9696	broad.mit.edu	37	1	17272816	17272816	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:17272816C>T	uc001azt.2	+	16	2268	c.2199C>T	c.(2197-2199)TCC>TCT	p.S733S	CROCC_uc009voz.1_Silent_p.S496S|CROCC_uc001azu.2_Silent_p.S36S	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	733	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		AGGAGGCCTCCCTGCAGGACT	0.627													14	44					0	0	0.002450	0	0
PADI3	51702	broad.mit.edu	37	1	17601191	17601191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:17601191C>T	uc001bai.2	+	11	1257	c.1217C>T	c.(1216-1218)TCC>TTC	p.S406F		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	406					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GGCCTGGACTCCTTTGGGAAC	0.607											OREG0013148	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	30					0	0	0.000978	0	0
PADI3	51702	broad.mit.edu	37	1	17601233	17601233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:17601233G>A	uc001bai.2	+	11	1299	c.1259G>A	c.(1258-1260)GGG>GAG	p.G420E		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	420					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GTGGCCAATGGGAAAGAGTAC	0.607											OREG0013148	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	24					0	0	0.006122	0	0
UBR4	23352	broad.mit.edu	37	1	19431085	19431085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:19431085G>A	uc001bbi.2	-	86	12725	c.12721C>T	c.(12721-12723)CTC>TTC	p.L4241F	UBR4_uc010ocw.1_5'Flank|UBR4_uc001bbg.2_5'UTR|UBR4_uc001bbh.2_5'UTR	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4241					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TTACCTGTGAGACTTTTAAGG	0.517													3	19					0	0	0.004672	0	0
C1orf151	440574	broad.mit.edu	37	1	19949983	19949983	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:19949983T>C	uc001bci.1	+	3	201	c.128T>C	c.(127-129)TTA>TCA	p.L43S	C1orf151_uc001bch.1_RNA|NBL1_uc009vpl.1_Intron	NM_001032363	NP_001027535	Q5TGZ0	CA151_HUMAN	chromosome 1 open reading frame 151 protein	43						integral to membrane|mitochondrion				central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000323)|Lung NSC(340;0.000401)|Breast(348;0.00043)|Ovarian(437;0.00374)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.58e-05)|Kidney(64;0.000191)|GBM - Glioblastoma multiforme(114;0.000696)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		ATGTGGCCATTAGCCTTCGGT	0.393													33	77					0	0	0.003271	0	0
KIF17	57576	broad.mit.edu	37	1	21014262	21014262	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:21014262G>A	uc001bdr.3	-	8	1675	c.1557C>T	c.(1555-1557)TCC>TCT	p.S519S	KIF17_uc001bdp.3_5'Flank|KIF17_uc001bdq.3_5'Flank|KIF17_uc009vpx.2_Intron|KIF17_uc001bds.3_Silent_p.S519S	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	519					microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		CCGCAAACCTGGAGGAAACCT	0.542													18	45					0	0	0.007413	0	0
ECE1	1889	broad.mit.edu	37	1	21551882	21551882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:21551882G>A	uc001bek.2	-	17	1976	c.1901C>T	c.(1900-1902)TCC>TTC	p.S634F	ECE1_uc001bem.2_Missense_Mutation_p.S618F|ECE1_uc001bej.2_Missense_Mutation_p.S622F|ECE1_uc001bei.2_Missense_Mutation_p.S631F|ECE1_uc010odl.1_Missense_Mutation_p.S634F	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	634	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		GGCCTCCACGGATGAGTTCTT	0.627													8	18					0	0	0.008291	0	0
EPHA8	2046	broad.mit.edu	37	1	22913029	22913029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:22913029C>T	uc001bfx.1	+	4	1005	c.880C>T	c.(880-882)CCT>TCT	p.P294S	EPHA8_uc001bfw.2_Missense_Mutation_p.P294S	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	294	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TGCCCGCTGCCCTCCCCACAG	0.687													13	32					0	0	0.001368	0	0
EPHB2	2048	broad.mit.edu	37	1	23111538	23111538	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:23111538C>T	uc009vqj.1	+	3	925	c.780C>T	c.(778-780)TTC>TTT	p.F260F	EPHB2_uc001bge.2_Silent_p.F260F|EPHB2_uc001bgf.2_Silent_p.F260F|EPHB2_uc010odu.1_Silent_p.F260F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	260	Extracellular (Potential).|Cys-rich.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		AAGCAGGCTTCGAGGCCGTTG	0.617									Hereditary_Prostate_Cancer				18	63					0	0	0.006122	0	0
ASAP3	55616	broad.mit.edu	37	1	23769057	23769057	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:23769057G>A	uc001bha.2	-	6	646	c.522C>T	c.(520-522)ATC>ATT	p.I174I	ASAP3_uc010odz.1_Silent_p.I43I|ASAP3_uc010oea.1_Silent_p.I165I|ASAP3_uc001bhc.1_Silent_p.I174I	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	174					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CCTCCCCAGGGATCCCTCCTG	0.627													8	31					0	0	0.003080	0	0
MYOM3	127294	broad.mit.edu	37	1	24417428	24417428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:24417428G>A	uc001bin.3	-	12	1454	c.1291C>T	c.(1291-1293)CGG>TGG	p.R431W	MYOM3_uc001bim.3_Missense_Mutation_p.R88W|MYOM3_uc001bio.2_Missense_Mutation_p.R431W|MYOM3_uc001bip.1_Missense_Mutation_p.R88W	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	431	Fibronectin type-III 1.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		ATTGGGCACCGACAAGTCCCT	0.642													14	55					0	0	0.008871	0	0
RHD	6007	broad.mit.edu	37	1	25599183	25599183	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:25599183C>A	uc001bjz.2	+	1	203	c.145C>A	c.(145-147)CAA>AAA	p.Q49K	RHD_uc010oep.1_Missense_Mutation_p.Q49K|RHD_uc001bkc.2_Missense_Mutation_p.Q49K|RHD_uc009vrm.2_5'UTR|RHD_uc001bka.2_Missense_Mutation_p.Q49K|RHD_uc001bkb.2_Missense_Mutation_p.Q49K|RHD_uc009vrn.2_Missense_Mutation_p.Q49K|RHD_uc009vro.2_Missense_Mutation_p.Q49K|RHD_uc009vrp.2_Missense_Mutation_p.Q49K	NM_016124	NP_057208	Q02161	RHD_HUMAN	Rh blood group D antigen isoform 1	49	Helical; (Potential).					integral to plasma membrane				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;7.39e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;6.43e-07)|STAD - Stomach adenocarcinoma(196;0.000332)|BRCA - Breast invasive adenocarcinoma(304;0.000438)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.000908)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GGCATCCTATCAAGGTGAGAG	0.522													41	33					2.69774e-35	2.76706e-35	0.003610	1	0
NUDC	10726	broad.mit.edu	37	1	27269436	27269436	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:27269436C>T	uc001bng.1	+	6	737	c.621C>T	c.(619-621)CTC>CTT	p.L207L	NUDC_uc001bnh.1_Silent_p.L264L|NUDC_uc009vsq.1_Silent_p.L181L	NM_006600	NP_006591	Q9Y266	NUDC_HUMAN	nuclear distribution gene C homolog	207	CS.				cell proliferation|cytokinesis|mitotic prometaphase|multicellular organismal development	cytosol|microtubule|nucleoplasm	protein binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;6.1e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.87e-29)|Colorectal(126;5.74e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000281)|STAD - Stomach adenocarcinoma(196;0.000604)|KIRC - Kidney renal clear cell carcinoma(1967;0.000739)|READ - Rectum adenocarcinoma(331;0.0421)		GGCGGCACCTCCGGGTGGGGC	0.602													26	40					0	0	0.004656	0	0
MECR	51102	broad.mit.edu	37	1	29542634	29542634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:29542634G>A	uc001brq.1	-	3	325	c.289C>T	c.(289-291)CTT>TTT	p.L97F	MECR_uc001brp.1_Missense_Mutation_p.L21F|MECR_uc001brr.1_Missense_Mutation_p.L21F|MECR_uc001brs.1_RNA|MECR_uc001brt.1_Missense_Mutation_p.L21F|MECR_uc010ofz.1_Missense_Mutation_p.L97F	NM_016011	NP_057095	Q9BV79	MECR_HUMAN	trans-2-enoyl-CoA reductase, mitochondrial	97					fatty acid biosynthetic process	mitochondrion	trans-2-enoyl-CoA reductase (NADPH) activity|zinc ion binding			ovary(1)	1		Colorectal(325;0.000389)|Breast(348;0.00765)|Lung NSC(340;0.0081)|all_lung(284;0.00914)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.39e-07)|COAD - Colon adenocarcinoma(152;2.04e-05)|STAD - Stomach adenocarcinoma(196;0.0195)|BRCA - Breast invasive adenocarcinoma(304;0.053)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.137)		AGTTCAGGAAGGAATCCGTAG	0.428													11	47					0	0	0.000978	0	0
CSMD2	114784	broad.mit.edu	37	1	34015943	34015943	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:34015943G>A	uc001bxn.1	-	55	8348	c.8319C>T	c.(8317-8319)TCC>TCT	p.S2773S	CSMD2_uc001bxm.1_Silent_p.S2917S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2773	Sushi 19.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GATGGCCACAGGACACCACTG	0.562													10	33					0	0	0.006214	0	0
C1orf109	54955	broad.mit.edu	37	1	38155297	38155298	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:38155297_38155298CC>AT	uc001cbp.2	-	2	445_446	c.255_256GG>AT	c.(253-258)CTGGAC>CTATAC	p.D86Y	C1orf109_uc010oig.1_Missense_Mutation_p.D149Y|C1orf109_uc001cbo.2_Missense_Mutation_p.D148Y|C1orf109_uc001cbq.1_Intron|CDCA8_uc001cbr.2_5'Flank|CDCA8_uc001cbs.2_5'Flank	NM_017850	NP_060320	Q9NX04	CA109_HUMAN	hypothetical protein LOC54955	86											0		Myeloproliferative disorder(586;0.0393)				CCTAGCTTGTCCAGGACGATGT	0.52													30	69					0	0	0.004672	0	0
MFSD2A	84879	broad.mit.edu	37	1	40422863	40422863	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:40422863C>T	uc001cev.2	+	2	379	c.198C>T	c.(196-198)TTC>TTT	p.F66F	MFSD2A_uc010ojb.1_Intron|MFSD2A_uc001ceu.2_Silent_p.F66F|MFSD2A_uc010ojc.1_Intron|MFSD2A_uc009vvy.2_RNA	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	66	Helical; (Potential).				transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						TGGGTTTCTTCCTTCAGATCT	0.527													40	105					0	0	0.006999	0	0
RIMKLA	284716	broad.mit.edu	37	1	42880252	42880252	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:42880252C>T	uc001chi.2	+	5	921	c.783C>T	c.(781-783)CTC>CTT	p.L261L		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	261	ATP-grasp.				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						GCATTGATCTCCTTATCATGG	0.517													63	146					0	0	0.003610	0	0
PTPRF	5792	broad.mit.edu	37	1	44085233	44085233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:44085233C>T	uc001cjr.2	+	28	5261	c.4921C>T	c.(4921-4923)CTC>TTC	p.L1641F	PTPRF_uc001cjs.2_Missense_Mutation_p.L1632F|PTPRF_uc001cju.2_Missense_Mutation_p.L1030F|PTPRF_uc009vwt.2_Missense_Mutation_p.L1201F|PTPRF_uc001cjv.2_Missense_Mutation_p.L1112F|PTPRF_uc001cjw.2_Missense_Mutation_p.L867F	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1641	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CGCCATGGAGCTCGAGTTCAA	0.652													18	35					0	0	0.002780	0	0
B4GALT2	8704	broad.mit.edu	37	1	44447572	44447572	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:44447572C>T	uc001clg.2	+	3	895	c.525C>T	c.(523-525)CGC>CGT	p.R175R	B4GALT2_uc001clh.2_Silent_p.R109R|B4GALT2_uc010okl.1_Silent_p.R204R|B4GALT2_uc001cli.2_Silent_p.R175R	NM_003780	NP_003771	O60909	B4GT2_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	175	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			N-Acetyl-D-glucosamine(DB00141)	AGCGGCTGCGCTACGGCGTCT	0.607													7	29					0	0	0.001984	0	0
TTC39A	22996	broad.mit.edu	37	1	51787445	51787445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:51787445C>T	uc001csl.2	-	2	202	c.97G>A	c.(97-99)GAC>AAC	p.D33N	TTC39A_uc001csk.2_Missense_Mutation_p.D33N|TTC39A_uc010ond.1_Missense_Mutation_p.D5N|TTC39A_uc010one.1_Missense_Mutation_p.D32N|TTC39A_uc010onf.1_Missense_Mutation_p.D36N|TTC39A_uc001csn.2_Missense_Mutation_p.D32N|TTC39A_uc001cso.1_Missense_Mutation_p.D29N|TTC39A_uc009vyy.1_Missense_Mutation_p.D5N	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	33							binding			skin(1)	1						AGGAAGAGGTCCAGGGCGGTC	0.632													10	25					0	0	0.008291	0	0
PPAP2B	8613	broad.mit.edu	37	1	56962279	56962279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:56962279C>T	uc001cyj.1	-	7	1381	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	294	Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						GAAAGGATTTCCTTCCGGATA	0.478													17	35					0	0	0.006122	0	0
C8B	732	broad.mit.edu	37	1	57399040	57399040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:57399040G>A	uc001cyp.2	-	10	1587	c.1520C>T	c.(1519-1521)CCC>CTC	p.P507L	C8B_uc010oon.1_Missense_Mutation_p.P445L|C8B_uc010ooo.1_Missense_Mutation_p.P455L	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	507	EGF-like.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TCCTTGGCAGGGAGCACAGTG	0.552													17	44					0	0	0.006122	0	0
L1TD1	54596	broad.mit.edu	37	1	62672651	62672651	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:62672651G>A	uc001dae.3	+	3	653	c.351G>A	c.(349-351)GGG>GGA	p.G117G		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	117										ovary(1)|skin(1)	2						ggatggtagggaaaatagaag	0.05													16	66					0	0	0.008871	0	0
USP1	7398	broad.mit.edu	37	1	62911009	62911009	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:62911009A>G	uc001daj.1	+	6	1486	c.1158A>G	c.(1156-1158)GAA>GAG	p.E386E	USP1_uc001dak.1_Silent_p.E386E|USP1_uc001dal.1_Silent_p.E386E	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	386					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		GGAAGTGTGAAAGTGATAACA	0.348													6	20					0	0	0.001168	0	0
PGM1	5236	broad.mit.edu	37	1	64120092	64120092	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:64120092C>T	uc001dbh.2	+	10	1767	c.1554C>T	c.(1552-1554)ATC>ATT	p.I518I	PGM1_uc010ooy.1_Silent_p.I321I|PGM1_uc010ooz.1_Silent_p.I536I	NM_002633	NP_002624	P36871	PGM1_HUMAN	phosphoglucomutase 1	518					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			ovary(2)|kidney(1)	3						GGCTGTACATCGATAGCTATG	0.532													11	22					0	0	0.000978	0	0
RAVER2	55225	broad.mit.edu	37	1	65243731	65243731	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:65243731C>T	uc001dbs.1	+	3	820	c.742C>T	c.(742-744)CTG>TTG	p.L248L	RAVER2_uc001dbt.1_Silent_p.L127L|RAVER2_uc010opb.1_Silent_p.L127L	NM_018211	NP_060681	Q9HCJ3	RAVR2_HUMAN	ribonucleoprotein, PTB-binding 2	248	RRM 3.					cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)	1						TTCAGAAGAGCTGTTGCAAAT	0.333													20	31					0	0	0.002780	0	0
LEPR	3953	broad.mit.edu	37	1	66102401	66102401	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:66102401C>T	uc001dci.2	+	20	3403	c.3201C>T	c.(3199-3201)TTC>TTT	p.F1067F	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1067	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		AGGGAAATTTCCCTGAAGAAA	0.358													24	63					0	0	0.002780	0	0
INSL5	10022	broad.mit.edu	37	1	67266887	67266887	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:67266887G>A	uc001dcw.2	-	1	53	c.18C>T	c.(16-18)TTC>TTT	p.F6F		NM_005478	NP_005469	Q9Y5Q6	INSL5_HUMAN	insulin-like 5 precursor	6						extracellular region	hormone activity				0						AAAACAGAGTGAAAATGGAGC	0.408													12	15					0	0	0.001368	0	0
LRRC7	57554	broad.mit.edu	37	1	70505099	70505099	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:70505099G>C	uc001dep.2	+	19	3508	c.3478G>C	c.(3478-3480)GTG>CTG	p.V1160L	LRRC7_uc009wbg.2_Missense_Mutation_p.V444L|LRRC7_uc001deq.2_Missense_Mutation_p.V401L	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1160						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CAGCGTTACAGTGACTGAGTC	0.498													18	50					0	0	0.007413	0	0
C1orf173	127254	broad.mit.edu	37	1	75037506	75037506	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:75037506C>T	uc001dgg.2	-	14	4107	c.3888G>A	c.(3886-3888)GAG>GAA	p.E1296E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1296	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGTCCTCTTCCTCCTCTGGGT	0.532													28	75					0	0	0.006320	0	0
C1orf173	127254	broad.mit.edu	37	1	75038256	75038256	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:75038256C>T	uc001dgg.2	-	14	3357	c.3138G>A	c.(3136-3138)AGG>AGA	p.R1046R		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1046	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AAATTTCTTTCCTATCATCTT	0.453													32	82					0	0	0.003755	0	0
C1orf173	127254	broad.mit.edu	37	1	75065500	75065500	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:75065500T>A	uc001dgg.2	-	11	1824	c.1605A>T	c.(1603-1605)AAA>AAT	p.K535N	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.K329N	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	535	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTAAATTATCTTTTTTATCAT	0.403													23	69					0	0	0.003330	0	0
TTLL7	79739	broad.mit.edu	37	1	84385483	84385483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:84385483C>T	uc001djc.2	-	13	1795	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	467					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		TCATACTTTTCAAGTAATGCT	0.343													13	47					0	0	0.004007	0	0
CLCA4	22802	broad.mit.edu	37	1	87036790	87036790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:87036790G>A	uc009wcs.2	+	8	1257	c.1213G>A	c.(1213-1215)GGA>AGA	p.G405R	CLCA4_uc009wct.2_Missense_Mutation_p.G168R|CLCA4_uc009wcu.2_Missense_Mutation_p.G225R	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	405	VWFA.					apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CCAACTCGATGGATCCGAAGT	0.418													40	82					0	0	0.002522	0	0
GLMN	11146	broad.mit.edu	37	1	92713505	92713505	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:92713505G>A	uc001dor.2	-	17	1630	c.1515C>T	c.(1513-1515)TTC>TTT	p.F505F	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Silent_p.F491F	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	505					muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		GTGGCTTTAAGAAATTATTCT	0.244									Multiple_Glomus_Tumors_(of_the_Skin)_Familial				7	37					0	0	0.008291	0	0
ABCA4	24	broad.mit.edu	37	1	94473808	94473808	+	Missense_Mutation	SNP	C	T	T	rs142253670		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:94473808C>T	uc001dqh.2	-	42	5985	c.5881G>A	c.(5881-5883)GGA>AGA	p.G1961R	ABCA4_uc001dqi.1_Missense_Mutation_p.G80R	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1961	ABC transporter 2.|Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GGGCGAACTCCGACACACAGC	0.542													13	41					0	0	0.002450	0	0
DPYD	1806	broad.mit.edu	37	1	97547948	97547948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:97547948C>T	uc001drv.2	-	22	2982	c.2845G>A	c.(2845-2847)GAT>AAT	p.D949N		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	949	4Fe-4S ferredoxin-type 2.				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ATTTCTTCATCAATCATAGCC	0.393													26	47					0	0	0.005443	0	0
DPYD	1806	broad.mit.edu	37	1	98164976	98164976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:98164976G>A	uc001drv.2	-	6	748	c.611C>T	c.(610-612)TCC>TTC	p.S204F	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	204					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AGCCAAAAAGGAAGCACAACT	0.393													18	39					0	0	0.004990	0	0
GSTM4	2948	broad.mit.edu	37	1	110207637	110207637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:110207637C>T	uc001dyh.2	+	8	886	c.572C>T	c.(571-573)TCC>TTC	p.S191F	GSTM2_uc001dyi.2_Intron	NM_147148	NP_671489	Q03013	GSTM4_HUMAN	glutathione S-transferase mu 4 isoform 2	Error:Variant_position_missing_in_Q03013_after_alignment					xenobiotic metabolic process	endoplasmic reticulum membrane	glutathione transferase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		all cancers(265;0.0123)|Colorectal(144;0.0129)|Epithelial(280;0.0147)|Lung(183;0.0422)|COAD - Colon adenocarcinoma(174;0.0471)|LUSC - Lung squamous cell carcinoma(189;0.227)	Glutathione(DB00143)	TTCTAGGTTTCCTGTGGCATA	0.209													13	20					0	0	0.001855	0	0
SYCP1	6847	broad.mit.edu	37	1	115453118	115453118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:115453118G>A	uc001efr.2	+	17	1630	c.1421G>A	c.(1420-1422)AGA>AAA	p.R474K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.R474K|SYCP1_uc009wgw.2_Missense_Mutation_p.R474K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	474	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTCCAAGCCAGAGAGGTTTGT	0.264													13	18					0	0	0.002450	0	0
TBX15	6913	broad.mit.edu	37	1	119427590	119427590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:119427590G>A	uc001ehl.1	-	8	1571	c.1256C>T	c.(1255-1257)TCC>TTC	p.S419F	TBX15_uc009whj.1_Missense_Mutation_p.S243F	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	525						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		TAGCCTAGGGGAAGTGGGGAA	0.532													8	15					0	0	0.003080	0	0
PHGDH	26227	broad.mit.edu	37	1	120277300	120277300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:120277300C>T	uc001ehz.2	+	6	781	c.554C>T	c.(553-555)TCC>TTC	p.S185F	PHGDH_uc009whl.2_Missense_Mutation_p.S87F|PHGDH_uc009whm.2_Missense_Mutation_p.S83F|PHGDH_uc001eia.2_Missense_Mutation_p.S185F|PHGDH_uc009whn.2_Missense_Mutation_p.S185F|PHGDH_uc001eib.2_Missense_Mutation_p.S151F	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	185					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	GTCTCGGCCTCCTTTGGTGTT	0.507													242	659					0	0	0.003610	0	0
ANXA9	8416	broad.mit.edu	37	1	150960762	150960762	+	Missense_Mutation	SNP	C	T	T	rs150067239	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:150960762C>T	uc001ewa.2	+	12	1267	c.797C>T	c.(796-798)TCG>TTG	p.S266L		NM_003568	NP_003559	O76027	ANXA9_HUMAN	annexin A9	266					cell-cell adhesion	cell surface|cytosol	acetylcholine receptor activity|calcium ion binding|calcium-dependent phospholipid binding|phosphatidylserine binding|protein homodimerization activity				0	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TTTCCAGCTTCGGTGATCAAG	0.517													16	53					0	0	0.010504	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058892	152058892	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:152058892C>T	uc001ezo.1	-	3	1331	c.1266G>A	c.(1264-1266)CAG>CAA	p.Q422Q		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	422							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			ACTTCCCATCCTGTGTTTGGG	0.458													27	45					0	0	0.004656	0	0
FLG2	388698	broad.mit.edu	37	1	152326877	152326877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:152326877C>T	uc001ezw.3	-	3	3458	c.3385G>A	c.(3385-3387)GGA>AGA	p.G1129R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1129	Ser-rich.|Filaggrin 4.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCATGTTGTCCAAAGCCAGAA	0.522													53	110					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152329303	152329303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:152329303C>T	uc001ezw.3	-	3	1032	c.959G>A	c.(958-960)GGA>GAA	p.G320E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	320	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCCTTAATTCCTGACTGACA	0.483													28	64					0	0	0.005443	0	0
KPRP	448834	broad.mit.edu	37	1	152732712	152732712	+	Silent	SNP	C	T	T	rs138779194	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:152732712C>T	uc001fal.1	+	2	706	c.648C>T	c.(646-648)AGC>AGT	p.S216S		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	216						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTACAGCAGCTGTTTCCCTC	0.562													28	77					0	0	0.002096	0	0
LCE1A	353131	broad.mit.edu	37	1	152800038	152800038	+	Silent	SNP	C	T	T	rs4990420		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:152800038C>T	uc010pdw.1	+	1	90	c.90C>T	c.(88-90)CCC>CCT	p.P30P		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	30	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ctaagtgccccccaaagtgtc	0.433													13	34					0	0	0.001855	0	0
LCE1A	353131	broad.mit.edu	37	1	152800122	152800123	+	Missense_Mutation	DNP	CG	TT	TT	rs148143373	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:152800122_152800123CG>TT	uc010pdw.1	+	1	174_175	c.174_175CG>TT	c.(172-177)GGCGGC>GGTTGC	p.G59C		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	59	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCTCTGGGGGCGGCTGCAGCTC	0.545													6	51					0	0	0.004672	0	0
LCE1A	353131	broad.mit.edu	37	1	152800131	152800131	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:152800131C>T	uc010pdw.1	+	1	183	c.183C>T	c.(181-183)AGC>AGT	p.S61S		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	61	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCGGCTGCAGCTCTGGGGGAG	0.577													6	48					0	0	0.001984	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153270446	153270446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:153270446G>A	uc001fbn.1	-	7	1065	c.1012C>T	c.(1012-1014)CAT>TAT	p.H338Y		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	338					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGCTTGAAATGAGGCCAGGTG	0.582													31	77					0	0	0.008361	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153270515	153270515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:153270515C>T	uc001fbn.1	-	7	996	c.943G>A	c.(943-945)GGC>AGC	p.G315S		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	315					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCACTGTGGCCCATCAGCAGG	0.577													53	164					0	0	0.003610	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153279639	153279639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:153279639C>T	uc001fbn.1	-	2	213	c.160G>A	c.(160-162)GGG>AGG	p.G54R		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	54					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACTGCATCCCTGGGAGCTGG	0.632													7	13					0	0	0.003080	0	0
S100A9	6280	broad.mit.edu	37	1	153330852	153330852	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:153330852C>T	uc001fbq.2	+	2	136	c.93C>T	c.(91-93)ACC>ACT	p.T31T		NM_002965	NP_002956	P06702	S10A9_HUMAN	S100 calcium-binding protein A9	31	EF-hand 1.|1; low affinity.				cell-cell signaling	cytoplasm|cytoskeleton|nucleus|plasma membrane	calcium ion binding|protein binding|signal transducer activity				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			ACCCAGACACCCTGAACCAGG	0.522													9	17					0	0	0.006214	0	0
S100A2	6273	broad.mit.edu	37	1	153533975	153533975	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:153533975G>A	uc001fcb.2	-	3	572	c.234C>T	c.(232-234)TTC>TTT	p.F78F		NM_005978	NP_005969	P29034	S10A2_HUMAN	S100 calcium binding protein A2	79	EF-hand 2.				endothelial cell migration		calcium ion binding			ovary(1)	1	all_lung(78;5.98e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGAGTGCCAGGAAAACAGCAT	0.542													23	100					0	0	0.003954	0	0
MTX1	4580	broad.mit.edu	37	1	155182223	155182223	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:155182223G>A	uc001fjb.2	+	5	925	c.819G>A	c.(817-819)CGG>CGA	p.R273R	RAG1AP1_uc010pey.1_Intron|MTX1_uc001fjc.2_Silent_p.R242R	NM_002455	NP_002446	Q13505	MTX1_HUMAN	metaxin 1 isoform 1	273					protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane	protein binding			skin(1)	1	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			AAGTGACCCGGAAGTGGTATG	0.552													9	53					0	0	0.000978	0	0
FCRL1	115350	broad.mit.edu	37	1	157771861	157771861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:157771861G>A	uc001frg.2	-	5	843	c.730C>T	c.(730-732)CAC>TAC	p.H244Y	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.H244Y|FCRL1_uc001fri.2_Missense_Mutation_p.H244Y|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	244	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ATATCCTCGTGATAAAACCAG	0.582													13	28					0	0	0.001855	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517495	158517495	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:158517495G>C	uc010pil.1	-	1	401	c.401C>G	c.(400-402)CCA>CGA	p.P134R		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GTAGCGTAGTGGATTACAAAT	0.468													10	22					0	0	0.008291	0	0
SPTA1	6708	broad.mit.edu	37	1	158609395	158609395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:158609395C>T	uc001fst.1	-	35	5156	c.4957G>A	c.(4957-4959)GAG>AAG	p.E1653K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1653	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ATCTCTCTCTCCAATAGCTGA	0.483													21	70					0	0	0.006320	0	0
SPTA1	6708	broad.mit.edu	37	1	158624513	158624513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:158624513C>T	uc001fst.1	-	21	3123	c.2924G>A	c.(2923-2925)GGA>GAA	p.G975E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	975					actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCCAGCAACTCCCTCCACTGG	0.512													13	33					0	0	0.002450	0	0
APCS	325	broad.mit.edu	37	1	159558454	159558454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:159558454G>A	uc001ftv.2	+	2	724	c.628G>A	c.(628-630)GAA>AAA	p.E210K		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	210	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					TCTGAACTATGAAATCAGAGG	0.488													11	45					0	0	0.002450	0	0
ATP1A2	477	broad.mit.edu	37	1	160090788	160090788	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:160090788G>A	uc001fvc.2	+	2	237	c.105G>A	c.(103-105)AAG>AAA	p.K35K	ATP1A2_uc001fvb.2_Silent_p.K35K|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	35	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			AGCTGAAGAAGGAGGTGGCAA	0.607													3	8					0	0	0.004672	0	0
SLAMF7	57823	broad.mit.edu	37	1	160720162	160720162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:160720162C>T	uc001fwq.2	+	4	733	c.718C>T	c.(718-720)CTC>TTC	p.L240F	SLAMF7_uc010pjn.1_Missense_Mutation_p.L146F|SLAMF7_uc001fws.2_Missense_Mutation_p.L133F|SLAMF7_uc001fwr.2_Missense_Mutation_p.L240F|SLAMF7_uc010pjo.1_Intron|SLAMF7_uc010pjp.1_Intron|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Intron	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	240	Helical; (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CCTGCTCAGTCTCTTTGTACT	0.502													44	99					0	0	0.003610	0	0
LY9	4063	broad.mit.edu	37	1	160788098	160788098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:160788098G>A	uc001fwu.2	+	6	1483	c.1433G>A	c.(1432-1434)CGA>CAA	p.R478Q	LY9_uc001fwv.2_Missense_Mutation_p.R478Q|LY9_uc001fww.2_Missense_Mutation_p.R388Q|LY9_uc001fwx.2_Missense_Mutation_p.R388Q|LY9_uc001fwy.1_Missense_Mutation_p.R290Q|LY9_uc001fwz.2_Missense_Mutation_p.R130Q	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	478	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			ATTTGGAAGCGAAAAGGACGG	0.522													11	30					0	0	0.000978	0	0
CD244	51744	broad.mit.edu	37	1	160832449	160832449	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:160832449T>A	uc009wtq.2	-	1	197	c.19A>T	c.(19-21)ACC>TCC	p.T7S	CD244_uc001fxa.2_Missense_Mutation_p.T7S|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Missense_Mutation_p.T7S|CD244_uc010pjt.1_RNA	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	7					blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AGTATGAGGGTGACCACTTGC	0.642													12	27					0	0	0.003163	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161161968	161161968	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:161161968G>A	uc001fyt.3	-	8	2402	c.1974C>T	c.(1972-1974)ATC>ATT	p.I658I		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	658	Cys-rich.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			AGCCAGCATGGATGCATCGGC	0.562											OREG0013940	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	21					0	0	0.003163	0	0
ILDR2	387597	broad.mit.edu	37	1	166904701	166904701	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:166904701C>T	uc001gdx.1	-	6	773	c.717G>A	c.(715-717)GGG>GGA	p.G239G		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	239	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						TTGCTGCTTTCCCTGCTTCAT	0.582													7	19					0	0	0.003080	0	0
MAEL	84944	broad.mit.edu	37	1	166958989	166958989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:166958989G>A	uc001gdy.1	+	2	219	c.148G>A	c.(148-150)GAA>AAA	p.E50K	MAEL_uc001gdz.1_Intron|MAEL_uc009wvf.1_5'Flank	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	50	HMG box.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						GAGGGAGGAAGAAAAGGAGAA	0.547													10	25					0	0	0.006214	0	0
DUSP27	92235	broad.mit.edu	37	1	167097024	167097024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:167097024G>A	uc001geb.1	+	5	2656	c.2656G>A	c.(2656-2658)GAT>AAT	p.D886N		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	886					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GGGTGATGGGGATGAGGACAC	0.498													14	25					0	0	0.004007	0	0
BRP44	25874	broad.mit.edu	37	1	167889227	167889227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:167889227G>A	uc001ges.2	-	4	638	c.337C>T	c.(337-339)CGT>TGT	p.R113C	BRP44_uc001get.2_Missense_Mutation_p.R113C|BRP44_uc001geu.2_Missense_Mutation_p.R113C	NM_015415	NP_056230	O95563	BR44_HUMAN	brain protein 44	113						mitochondrion					0	all_hematologic(923;0.215)			KIRC - Kidney renal clear cell carcinoma(1967;0.247)		CTCCAAATACGAAAAAGCTGA	0.313													13	38					0	0	0.002450	0	0
SLC19A2	10560	broad.mit.edu	37	1	169446660	169446660	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:169446660G>A	uc001gge.3	-	2	744	c.540C>T	c.(538-540)GTC>GTT	p.V180V	SLC19A2_uc001ggf.3_Intron	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	180	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					CTGCCACTGAGACAAGGATTT	0.512													10	27					0	0	0.008291	0	0
F5	2153	broad.mit.edu	37	1	169524446	169524446	+	Silent	SNP	T	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:169524446T>G	uc001ggg.1	-	7	1237	c.1092A>C	c.(1090-1092)GCA>GCC	p.A364A	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	364	F5/8 type A 2.|Plastocyanin-like 3.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GTATTACAGGTGCATAGTCCC	0.458													34	73					0	0	0.003755	0	0
SELP	6403	broad.mit.edu	37	1	169564075	169564075	+	Silent	SNP	C	T	T	rs138760541	by1000genomes	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:169564075C>T	uc001ggi.3	-	13	2207	c.2142G>A	c.(2140-2142)GCG>GCA	p.A714A	SELP_uc001ggh.2_Silent_p.A549A|SELP_uc009wvr.2_Silent_p.A714A	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	714	Extracellular (Potential).|Sushi 9.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	AGCAGTTCATCGCTATTGGCT	0.408													10	23					0	0	0.000978	0	0
MIR199A2	406977	broad.mit.edu	37	1	172113767	172113767	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:172113767G>A	hsa-mir-199a-2|MI0000281	-			c.18G>A			DNM3_uc009wwb.2_Intron|DNM3_uc001gie.2_Intron|DNM3_uc001gif.2_Intron																	0						GACGGAGCAGGATCTCCAGAA	0.537													8	19					0	0	0.004482	0	0
PAPPA2	60676	broad.mit.edu	37	1	176681099	176681099	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:176681099G>A	uc001gkz.2	+	12	4944	c.3780G>A	c.(3778-3780)GAG>GAA	p.E1260E	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1260					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGAAGAAAGAGGATGAGGTTT	0.398													6	23					0	0	0.001984	0	0
PAPPA2	60676	broad.mit.edu	37	1	176709186	176709186	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:176709186C>T	uc001gkz.2	+	14	5169	c.4005C>T	c.(4003-4005)TTC>TTT	p.F1335F	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1335					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ATGTCCTTTTCCACCATACCA	0.483													20	59					0	0	0.002299	0	0
ANGPTL1	9068	broad.mit.edu	37	1	178820340	178820340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:178820340C>T	uc001gma.2	-	6	1876	c.1400G>A	c.(1399-1401)GGA>GAA	p.G467E	RALGPS2_uc001gly.1_Intron|RALGPS2_uc001glz.2_Intron|RALGPS2_uc010pnb.1_Intron|ANGPTL1_uc001gmb.2_Missense_Mutation_p.G467E	NM_004673	NP_004664	O95841	ANGL1_HUMAN	angiopoietin-like 1 precursor	467	Fibrinogen C-terminal.					extracellular space	receptor binding				0						CCAGAAAATTCCATCTTGGTG	0.448													16	28					0	0	0.006122	0	0
C1orf125	126859	broad.mit.edu	37	1	179497464	179497464	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:179497464A>G	uc001gmo.2	+	23	2740	c.2613A>G	c.(2611-2613)CAA>CAG	p.Q871Q	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Silent_p.Q797Q|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	871	Glu-rich.										0						TGTTCTAGCAACCTTCAACAT	0.443													5	15					0	0	0.000602	0	0
TDRD5	163589	broad.mit.edu	37	1	179599910	179599910	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:179599910T>C	uc001gnf.1	+	7	1231	c.981T>C	c.(979-981)TTT>TTC	p.F327F	TDRD5_uc010pnp.1_Silent_p.F327F|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	327	Lotus/OST-HTH 3.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						AGGTAATTTTTAAAGAGCAAC	0.328													13	22					0	0	0.001855	0	0
LAMC1	3915	broad.mit.edu	37	1	183083788	183083788	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:183083788T>G	uc001gpy.3	+	5	1401	c.1144T>G	c.(1144-1146)TGC>GGC	p.C382G		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	382	Laminin EGF-like 2.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGTGAGAGGTGCCGAGAGAA	0.522													33	55					0	0	0.009535	0	0
C1orf26	54823	broad.mit.edu	37	1	185153928	185153928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:185153928C>T	uc001grg.3	+	9	1408	c.1294C>T	c.(1294-1296)CGT>TGT	p.R432C	C1orf26_uc001grh.3_Missense_Mutation_p.R432C	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	432	PINc.										0						AGAGCTAGATCGTATGAAGGA	0.318													16	33					0	0	0.006122	0	0
FAM5C	339479	broad.mit.edu	37	1	190234050	190234050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:190234050C>T	uc001gse.1	-	4	795	c.563G>A	c.(562-564)AGG>AAG	p.R188K	FAM5C_uc010pot.1_Missense_Mutation_p.R86K	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	188						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGTGCTGTCCCTGTCAATGAA	0.443													11	41					0	0	0.000978	0	0
FAM5C	339479	broad.mit.edu	37	1	190250829	190250829	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:190250829G>A	uc001gse.1	-	3	520	c.288C>T	c.(286-288)TTC>TTT	p.F96F	FAM5C_uc010pot.1_Intron	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	96						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GAGAGCCAAGGAAATTTCTTC	0.403													8	24					0	0	0.006214	0	0
KCNT2	343450	broad.mit.edu	37	1	196438156	196438156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:196438156C>T	uc001gtd.1	-	6	487	c.427G>A	c.(427-429)GAA>AAA	p.E143K	KCNT2_uc009wyt.1_5'Flank|KCNT2_uc001gte.1_Missense_Mutation_p.E143K|KCNT2_uc001gtf.1_Missense_Mutation_p.E143K|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.E143K|KCNT2_uc009wyv.1_Intron	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	143	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTAATTATTTCCAAGATGAAG	0.313													5	8					0	0	0.001984	0	0
CFH	3075	broad.mit.edu	37	1	196706689	196706689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:196706689G>A	uc001gtj.3	+	17	2921	c.2681G>A	c.(2680-2682)GGG>GAG	p.G894E		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	894	Sushi 15.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TATGCACATGGGACTAAATTG	0.378													9	20					0	0	0.006214	0	0
CFHR5	81494	broad.mit.edu	37	1	196967416	196967416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:196967416C>T	uc001gts.3	+	7	1257	c.1129C>T	c.(1129-1131)CCT>TCT	p.P377S		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	377	Sushi 6.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GAAATGGAATCCTGAAGTAGA	0.294													6	11					0	0	0.004482	0	0
CFHR5	81494	broad.mit.edu	37	1	196977674	196977674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:196977674G>A	uc001gts.3	+	10	1699	c.1571G>A	c.(1570-1572)AGA>AAA	p.R524K		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	524	Sushi 9.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TTAAAATGGAGAAACGATGGA	0.323													13	18					0	0	0.001368	0	0
KIF21B	23046	broad.mit.edu	37	1	200969850	200969850	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:200969850C>T	uc001gvs.1	-	10	1778	c.1461G>A	c.(1459-1461)GAG>GAA	p.E487E	KIF21B_uc001gvr.1_Silent_p.E487E|KIF21B_uc009wzl.1_Silent_p.E487E|KIF21B_uc010ppn.1_Silent_p.E487E	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	487	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTCACCGTAGCTCCTCGATCT	0.637													23	31					0	0	0.001882	0	0
CACNA1S	779	broad.mit.edu	37	1	201019617	201019617	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:201019617T>C	uc001gvv.2	-	34	4368	c.4141A>G	c.(4141-4143)ATG>GTG	p.M1381V		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1381	Phenylalkylamine binding (By similarity).|IV.|Helical; Name=S6 of repeat IV; (Potential).|Dihydropyridine binding (By similarity).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AAATTGTCCATGATGACAGCC	0.552													15	33					0	0	0.003163	0	0
CACNA1S	779	broad.mit.edu	37	1	201047112	201047112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:201047112C>T	uc001gvv.2	-	11	1741	c.1514G>A	c.(1513-1515)TGT>TAT	p.C505Y		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	505	Helical; Name=S3 of repeat II; (Potential).|II.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GATACCGCTACACACCACGAA	0.577													25	36					0	0	0.005443	0	0
KLHL12	59349	broad.mit.edu	37	1	202862461	202862461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:202862461G>A	uc001gyo.1	-	11	1686	c.1486C>T	c.(1486-1488)CGC>TGC	p.R496C	KLHL12_uc001gym.1_Intron|KLHL12_uc001gyn.1_Intron|KLHL12_uc010pqc.1_Missense_Mutation_p.R534C|KLHL12_uc009xah.1_Missense_Mutation_p.R395C	NM_021633	NP_067646	Q53G59	KLH12_HUMAN	kelch-like 12	496	Interaction with DVL3.|Kelch 5.				Wnt receptor signaling pathway		protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.166)			GAATCAGTGCGAATGTTGTAT	0.522													37	85					0	0	0.004289	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204226948	204226948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:204226948G>A	uc001hau.2	-	9	1374	c.1057C>T	c.(1057-1059)CCC>TCC	p.P353S	PLEKHA6_uc009xaw.1_5'UTR|PLEKHA6_uc009xax.1_5'UTR|PLEKHA6_uc009xay.1_5'UTR|PLEKHA6_uc009xaz.1_5'UTR|PLEKHA6_uc009xba.1_5'UTR|PLEKHA6_uc009xbb.1_5'UTR|PLEKHA6_uc009xbc.1_5'UTR	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	353	Pro-rich.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GAGGAGTAGGGGCCATAGTAC	0.587													18	45					0	0	0.006122	0	0
NFASC	23114	broad.mit.edu	37	1	204923443	204923443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:204923443G>A	uc001hbj.2	+	6	671	c.343G>A	c.(343-345)GAA>AAA	p.E115K	NFASC_uc001hbh.2_Missense_Mutation_p.E115K|NFASC_uc010pqz.1_Missense_Mutation_p.E109K|NFASC_uc010pra.1_Missense_Mutation_p.E109K|NFASC_uc001hbi.2_Missense_Mutation_p.E109K|NFASC_uc009xbg.1_Missense_Mutation_p.E182K|NFASC_uc010prb.1_Missense_Mutation_p.E109K|NFASC_uc010prc.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	115	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			ATATGAGGGGGAATATCAGTG	0.607													7	24					0	0	0.003080	0	0
ELK4	2005	broad.mit.edu	37	1	205589662	205589662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:205589662G>A	uc001hcy.1	-	3	1762	c.512C>T	c.(511-513)CCA>CTA	p.P171L	ELK4_uc001hcz.2_Missense_Mutation_p.P171L	NM_001973	NP_001964	P28324	ELK4_HUMAN	ELK4 protein isoform a	171						cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity				0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			TTTCTCGGCTGGATTCTCAGT	0.418			T	SLC45A3	prostate								13	26					0	0	0.002450	0	0
AVPR1B	553	broad.mit.edu	37	1	206224958	206224958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:206224958C>T	uc001hds.2	+	1	676	c.518C>T	c.(517-519)TCC>TTC	p.S173F		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	173	Helical; Name=4; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	TTCATTTTTTCCCTGCGGGAG	0.652													24	32					0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	1	211380847	211380847	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:211380847G>A	uc001hid.2	+	1	459	c.267G>A	c.(265-267)CAG>CAA	p.Q89Q						SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;																		TGGACCCACAGAATCAGACCA	0.542													5	19					0	0	0.000602	0	0
USH2A	7399	broad.mit.edu	37	1	215844436	215844436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:215844436C>T	uc001hku.1	-	64	14398	c.14011G>A	c.(14011-14013)GAA>AAA	p.E4671K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4671	Fibronectin type-III 32.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTGTATAATTCGTAATACAAA	0.418										HNSCC(13;0.011)			16	59					0	0	0.003163	0	0
USH2A	7399	broad.mit.edu	37	1	215847677	215847677	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:215847677G>A	uc001hku.1	-	63	13963	c.13576C>T	c.(13576-13578)CGA>TGA	p.R4526*		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4526	Fibronectin type-III 30.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGGCTGGTTCGATCTTTGACA	0.517										HNSCC(13;0.011)			26	59					0	0	0.004656	0	0
IARS2	55699	broad.mit.edu	37	1	220284190	220284190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:220284190C>T	uc001hmc.2	+	11	1494	c.1390C>T	c.(1390-1392)CCG>TCG	p.P464S		NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	464					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	GCATAGCTATCCGTATGACTG	0.358													10	13					0	0	0.006214	0	0
DISP1	84976	broad.mit.edu	37	1	223177379	223177379	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:223177379C>T	uc001hnu.1	+	8	2787	c.2640C>T	c.(2638-2640)CCC>CCT	p.P880P		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	880					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		GGAGCTTCCCCTACAAGCAAG	0.502													118	291					0	0	0.003610	0	0
DISP1	84976	broad.mit.edu	37	1	223177389	223177389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:223177389G>A	uc001hnu.1	+	8	2797	c.2650G>A	c.(2650-2652)GAG>AAG	p.E884K		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	884					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		CTACAAGCAAGAGATTTTTGA	0.488													116	265					0	0	0.003610	0	0
PRSS38	339501	broad.mit.edu	37	1	228033839	228033839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:228033839C>T	uc001hrh.2	+	5	911	c.911C>T	c.(910-912)GCT>GTT	p.A304V		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	304					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CCAGCCCCTGCTCTCTCTCCA	0.532													14	39					0	0	0.002450	0	0
OBSCN	84033	broad.mit.edu	37	1	228473858	228473858	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:228473858C>T	uc009xez.1	+	34	9128	c.9084C>T	c.(9082-9084)ATC>ATT	p.I3028I	OBSCN_uc001hsn.2_Silent_p.I3028I|OBSCN_uc001hsq.1_Silent_p.I284I	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3028	Ig-like 30.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GTTGCCGGATCTCCCCGGCCA	0.627													6	10					0	0	0.001168	0	0
OBSCN	84033	broad.mit.edu	37	1	228528804	228528804	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:228528804C>T	uc009xez.1	+	73	17750	c.17706C>T	c.(17704-17706)TTC>TTT	p.F5902F	OBSCN_uc001hsn.2_Silent_p.F5902F|OBSCN_uc001hsr.1_Silent_p.F531F	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5902	PH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGGCCACTTCATCGTGTGGG	0.682													6	14					0	0	0.003080	0	0
OBSCN	84033	broad.mit.edu	37	1	228538555	228538555	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:228538555C>T	uc009xez.1	+	77	18374	c.18330C>T	c.(18328-18330)TTC>TTT	p.F6110F	OBSCN_uc001hsn.2_Silent_p.F6110F|OBSCN_uc001hsr.1_Silent_p.F739F|OBSCN_uc009xfa.2_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6110	Ig-like 53.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CACCACGGTTCGTGAACAAGG	0.433													6	36					0	0	0.001168	0	0
RAB4A	5867	broad.mit.edu	37	1	229431640	229431640	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:229431640C>T	uc001hth.2	+	4	481	c.273C>T	c.(271-273)CTC>CTT	p.L91L	RAB4A_uc001hti.2_RNA|RAB4A_uc001htj.2_RNA	NM_004578	NP_004569	P20338	RAB4A_HUMAN	RAB4A, member RAS oncogene family	86							GDP binding|GTP binding|GTPase activity			ovary(1)	1	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.178)				GGGCTCTCCTCGTCTATGATA	0.552													14	26					0	0	0.003163	0	0
PGBD5	79605	broad.mit.edu	37	1	230461093	230461093	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:230461093G>C	uc010pwb.1	-	6	1135	c.1135C>G	c.(1135-1137)CTG>GTG	p.L379V	PGBD5_uc001htv.2_Missense_Mutation_p.L478V	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	379						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		ATGTAGCTCAGGTGAGCGGCA	0.537													55	117					0	0	0.003610	0	0
KCNK1	3775	broad.mit.edu	37	1	233807093	233807093	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:233807093C>T	uc010pxo.1	+	3	996	c.828C>T	c.(826-828)TTC>TTT	p.F276F	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	276	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TGAAAAAATTCAGAAAAATGT	0.463													14	23					0	0	0.002450	0	0
FMN2	56776	broad.mit.edu	37	1	240286540	240286540	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:240286540G>A	uc010pyd.1	+	2	1902	c.1677G>A	c.(1675-1677)GAG>GAA	p.E559E	FMN2_uc010pye.1_Silent_p.E559E	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	559					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AAGAAGCAGAGAAGTTTTGCT	0.522													17	38					0	0	0.004990	0	0
ZNF670	93474	broad.mit.edu	37	1	247200868	247200868	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:247200868G>A	uc001icd.1	-	4	1224	c.1053C>T	c.(1051-1053)GCC>GCT	p.A351A	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron	NM_033213	NP_149990	Q9BS34	ZN670_HUMAN	zinc finger protein 670	351	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00427)			GGCTTCGAAGGGCACTGGAAG	0.403													22	27					0	0	0.003954	0	0
OR2C3	81472	broad.mit.edu	37	1	247695676	247695676	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:247695676G>A	uc009xgy.2	-	2	500	c.138C>T	c.(136-138)ATC>ATT	p.I46I	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AGACCAGAATGATGATGCCAT	0.488													12	36					0	0	0.001855	0	0
OR2G3	81469	broad.mit.edu	37	1	247768910	247768910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:247768910C>T	uc010pyz.1	+	1	23	c.23C>T	c.(22-24)TCC>TTC	p.S8F		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AATGAGAGTTCCCTAATGGAT	0.468													13	41					0	0	0.001368	0	0
OR13G1	441933	broad.mit.edu	37	1	247835886	247835886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:247835886G>A	uc001idi.1	-	1	458	c.458C>T	c.(457-459)TCC>TTC	p.S153F		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTGCACCCAGGAATTGGTGAC	0.463													9	31					0	0	0.004482	0	0
OR13G1	441933	broad.mit.edu	37	1	247836268	247836268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:247836268G>A	uc001idi.1	-	1	76	c.76C>T	c.(76-78)CTC>TTC	p.L26F		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AGAAAAAAGAGGAAGATAATT	0.418													14	23					0	0	0.003163	0	0
OR2L2	26246	broad.mit.edu	37	1	248201644	248201644	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:248201644C>T	uc001idw.2	+	1	171	c.75C>T	c.(73-75)TTC>TTT	p.F25F	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	25	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTGGCCTTTTCGTATTCACCC	0.378													29	80					0	0	0.008361	0	0
OR2M5	127059	broad.mit.edu	37	1	248308834	248308834	+	Missense_Mutation	SNP	C	T	T	rs150844237		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:248308834C>T	uc010pze.1	+	1	385	c.385C>T	c.(385-387)CCT>TCT	p.P129S		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			CATTTGCCACCCTCTAAGATA	0.443													46	160					0	0	0.003610	0	0
OR2M5	127059	broad.mit.edu	37	1	248308892	248308892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:248308892C>T	uc010pze.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			ACTGCCTTCTCCTGGATCCTG	0.458													40	137					0	0	0.006230	0	0
FAM171A1	221061	broad.mit.edu	37	10	15290723	15290723	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:15290723G>A	uc001iob.2	-	5	676	c.669C>T	c.(667-669)CCC>CCT	p.P223P		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	223	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TGACATAGATGGGACCATCCA	0.587													21	49					0	0	0.010504	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762670	24762670	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:24762670A>C	uc001iru.3	+	6	1763	c.1360A>C	c.(1360-1362)AAA>CAA	p.K454Q	KIAA1217_uc001irs.2_Missense_Mutation_p.K374Q|KIAA1217_uc001irt.3_Missense_Mutation_p.K454Q|KIAA1217_uc010qcy.1_Missense_Mutation_p.K454Q|KIAA1217_uc010qcz.1_Missense_Mutation_p.K454Q|KIAA1217_uc001irv.1_Missense_Mutation_p.K304Q|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.K172Q|KIAA1217_uc001irz.2_Missense_Mutation_p.K172Q|KIAA1217_uc001irx.2_Missense_Mutation_p.K172Q|KIAA1217_uc001iry.2_Missense_Mutation_p.K172Q	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	454					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GTACAGACAGAAATCAAGGAA	0.493													10	31					0	0	0.008291	0	0
GPR158	57512	broad.mit.edu	37	10	25684905	25684905	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:25684905C>T	uc001isj.2	+	3	1134	c.1074C>T	c.(1072-1074)TTC>TTT	p.F358F		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	358	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AAGCAGGATTCTATCATCCTG	0.363													13	15					0	0	0.006122	0	0
GPR158	57512	broad.mit.edu	37	10	25755615	25755615	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:25755615G>A	uc001isj.2	+	5	1431	c.1371G>A	c.(1369-1371)ACG>ACA	p.T457T		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	457	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TGTTGGAAACGATCCTTTTTG	0.338													12	24					0	0	0.001855	0	0
ARMC4	55130	broad.mit.edu	37	10	28272855	28272855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:28272855C>T	uc009xky.2	-	6	834	c.736G>A	c.(736-738)GAA>AAA	p.E246K	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.E246K|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	246							binding			ovary(4)|skin(2)	6						TAACAAATTTCCCCACGAATT	0.393													12	20					0	0	0.001368	0	0
ARMC4	55130	broad.mit.edu	37	10	28284008	28284008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:28284008C>T	uc009xky.2	-	2	162	c.64G>A	c.(64-66)GAA>AAA	p.E22K	ARMC4_uc001itz.2_Missense_Mutation_p.E22K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	22							binding			ovary(4)|skin(2)	6						GGGGTGATTTCGAGGATTCCA	0.453													10	28					0	0	0.001368	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318466	30318466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:30318466C>T	uc001iux.2	-	2	670	c.611G>A	c.(610-612)GGG>GAG	p.G204E	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.G66E|KIAA1462_uc009xle.1_Missense_Mutation_p.G204E	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	204										ovary(4)	4						CAGTCTCTCCCCATCTCCATC	0.483													45	102					0	0	0.009718	0	0
PARD3	56288	broad.mit.edu	37	10	34759085	34759085	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:34759085G>A	uc010qej.1	-	4	510	c.510C>T	c.(508-510)CCC>CCT	p.P170P	PARD3_uc010qek.1_Silent_p.P170P|PARD3_uc010qel.1_Silent_p.P170P|PARD3_uc010qem.1_Silent_p.P170P|PARD3_uc010qen.1_Silent_p.P170P|PARD3_uc010qeo.1_Silent_p.P170P|PARD3_uc010qep.1_Silent_p.P170P|PARD3_uc010qeq.1_Silent_p.P170P|PARD3_uc001ixp.1_Silent_p.P35P|PARD3_uc001ixq.1_Silent_p.P170P|PARD3_uc001ixr.1_Silent_p.P170P|PARD3_uc001ixt.1_Silent_p.P35P|PARD3_uc001ixu.1_Silent_p.P170P	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	170					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				ACCAGCGTGTGGGATTTTTCC	0.493													29	44					0	0	0.006320	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430968	37430968	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:37430968G>A	uc001iza.1	+	7	1074	c.975G>A	c.(973-975)AGG>AGA	p.R325R		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	381						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GAAGACCTAGGAAGATCGCAT	0.428													26	42					0	0	0.004656	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430981	37430981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:37430981G>A	uc001iza.1	+	7	1087	c.988G>A	c.(988-990)GAG>AAG	p.E330K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	386						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GATCGCATGGGAGAAAAAAGA	0.438													24	44					0	0	0.004656	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508003	37508003	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:37508003G>A	uc001iza.1	+	34	3294	c.3195G>A	c.(3193-3195)CTG>CTA	p.L1065L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1121	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TAGCCACACTGAAACACCAAT	0.323													12	39					0	0	0.000978	0	0
FRMPD2	143162	broad.mit.edu	37	10	49400783	49400783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:49400783C>T	uc001jgi.2	-	16	2216	c.2109G>A	c.(2107-2109)ATG>ATA	p.M703I	FRMPD2_uc001jgh.2_Missense_Mutation_p.M671I|FRMPD2_uc001jgj.2_Missense_Mutation_p.M681I	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	703					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TGAAGTTATCCATTGATGTAC	0.527													13	40					0	0	0.002450	0	0
LRRC18	474354	broad.mit.edu	37	10	50121466	50121466	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:50121466G>A	uc001jhd.2	-	1	815	c.735C>T	c.(733-735)TCC>TCT	p.S245S	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.S245S	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	245						cytoplasm				ovary(1)|pancreas(1)	2						CCTTGGCCATGGAATTGGGTG	0.537													41	76					0	0	0.006230	0	0
ERCC6	2074	broad.mit.edu	37	10	50666971	50666971	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:50666971A>G	uc001jhs.3	-	21	4526	c.4372T>C	c.(4372-4374)TTA>CTA	p.L1458L	ERCC6_uc009xod.2_Silent_p.L618L|ERCC6_uc010qgr.1_Silent_p.L828L|ERCC6_uc001jhr.3_Silent_p.L826L	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	1458					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						GATGCAGATAACTTGGATTCA	0.478								Direct_reversal_of_damage|NER					15	44					0	0	0.003163	0	0
ASAH2	56624	broad.mit.edu	37	10	51974535	51974535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:51974535C>T	uc001jjd.2	-	8	1108	c.1108G>A	c.(1108-1110)GAT>AAT	p.D370N	ASAH2_uc009xos.2_Missense_Mutation_p.D370N	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	370	Lumenal (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						TTGGCGTTATCACAGGACTCT	0.418													3	8					0	0	0.003080	0	0
A1CF	29974	broad.mit.edu	37	10	52601719	52601719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:52601719C>T	uc001jjj.2	-	5	456	c.268G>A	c.(268-270)GAT>AAT	p.D90N	A1CF_uc010qhn.1_Missense_Mutation_p.D98N|A1CF_uc001jji.2_Missense_Mutation_p.D90N|A1CF_uc001jjh.2_Missense_Mutation_p.D98N|A1CF_uc010qho.1_Missense_Mutation_p.D98N|A1CF_uc009xov.2_Missense_Mutation_p.D90N|A1CF_uc001jjk.1_Missense_Mutation_p.D90N	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	90	RRM 1.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CCATTAAAATCCATCATCATT	0.289													7	20					0	0	0.001984	0	0
PCDH15	65217	broad.mit.edu	37	10	55582031	55582031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:55582031G>A	uc001jju.1	-	33	5850	c.5455C>T	c.(5455-5457)CCT>TCT	p.P1819S	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.P1816S|PCDH15_uc010qhw.1_Missense_Mutation_p.P1779S|PCDH15_uc010qhx.1_Missense_Mutation_p.P1750S|PCDH15_uc010qhy.1_Missense_Mutation_p.P1826S|PCDH15_uc010qhz.1_Missense_Mutation_p.P1821S|PCDH15_uc010qia.1_Missense_Mutation_p.P1799S|PCDH15_uc010qib.1_Missense_Mutation_p.P1796S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1819	Poly-Pro.|Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ggtggtggaggaagaggagtt	0.219										HNSCC(58;0.16)			6	19					0	0	0.001168	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687255	68687255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:68687255G>A	uc001jmz.1	+	2	1131	c.581G>A	c.(580-582)CGA>CAA	p.R194Q	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.R194Q	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	194	Extracellular (Potential).|LRR 6.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AACCGGATCCGAAGTTTAGCC	0.468													18	48					0	0	0.008871	0	0
COL13A1	1305	broad.mit.edu	37	10	71655329	71655329	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:71655329C>T	uc001jpr.1	+	11	1190	c.654C>T	c.(652-654)CAC>CAT	p.H218H	COL13A1_uc001jqj.1_Silent_p.H218H|COL13A1_uc001jps.1_Silent_p.H189H|COL13A1_uc001jpt.1_Silent_p.H218H|COL13A1_uc001jpu.1_Silent_p.H218H|COL13A1_uc001jpv.1_Silent_p.H218H|COL13A1_uc001jpx.1_Silent_p.H218H|COL13A1_uc001jpw.1_Silent_p.H206H|COL13A1_uc001jpy.1_Silent_p.H197H|COL13A1_uc001jpz.1_Silent_p.H180H|COL13A1_uc001jqa.1_Silent_p.H180H|COL13A1_uc001jqc.1_Silent_p.H218H|COL13A1_uc001jqb.1_Silent_p.H189H|COL13A1_uc001jql.2_Silent_p.H218H|COL13A1_uc001jqd.1_Silent_p.H206H|COL13A1_uc001jqe.1_Silent_p.H201H|COL13A1_uc001jqf.1_Silent_p.H218H|COL13A1_uc001jqg.1_Silent_p.H218H|COL13A1_uc001jqh.1_Silent_p.H218H|COL13A1_uc001jqi.1_Silent_p.H218H|COL13A1_uc010qjf.1_Silent_p.H27H|COL13A1_uc001jqk.1_Silent_p.H78H	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	218	Extracellular (Potential).|Nonhelical region 2 (NC2).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	AGTACCCACACCGGGTAAGTG	0.572													15	34					0	0	0.004007	0	0
PLCE1	51196	broad.mit.edu	37	10	95791437	95791437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:95791437G>A	uc001kjk.2	+	2	1268	c.634G>A	c.(634-636)GAT>AAT	p.D212N	PLCE1_uc010qnx.1_Missense_Mutation_p.D212N	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	212					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AATTTTAGACGATTGTGGAAA	0.388													8	16					0	0	0.004482	0	0
CYP2C8	1558	broad.mit.edu	37	10	96829107	96829107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:96829107G>A	uc001kkb.2	-	1	148	c.53C>T	c.(52-54)TCA>TTA	p.S18L	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_5'UTR|CYP2C8_uc010qob.1_5'UTR|CYP2C8_uc010qoc.1_5'UTR|CYP2C8_uc010qod.1_5'UTR	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	18					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TCTCCAGAGTGAAAAGAGAAG	0.458													9	11					0	0	0.008291	0	0
POLL	27343	broad.mit.edu	37	10	103345144	103345144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:103345144G>A	uc001ktg.1	-	3	1268	c.502C>T	c.(502-504)CCT>TCT	p.P168S	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_5'Flank|POLL_uc001kte.1_5'Flank|POLL_uc001kth.1_Intron|POLL_uc001kti.1_Missense_Mutation_p.P168S|POLL_uc001ktj.1_Missense_Mutation_p.P168S|POLL_uc001ktf.2_Missense_Mutation_p.P168S|POLL_uc001ktk.1_Intron|POLL_uc010qqa.1_Intron|POLL_uc010qqb.1_Intron|POLL_uc001ktm.2_Missense_Mutation_p.P168S|POLL_uc001ktl.2_Missense_Mutation_p.P80S|POLL_uc010qqc.1_Intron|POLL_uc010qqd.1_Intron|DPCD_uc001ktn.2_5'Flank	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	168					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		GGAGGAGGAGGAGAAAGGGCT	0.597								DNA_polymerases_(catalytic_subunits)					15	17					0	0	0.004007	0	0
COL17A1	1308	broad.mit.edu	37	10	105815664	105815664	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:105815664C>A	uc001kxr.2	-	18	1732	c.1563G>T	c.(1561-1563)AAG>AAT	p.K521N	COL17A1_uc010qqv.1_Missense_Mutation_p.K505N	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	521	Extracellular (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GGAGGCGGTCCTTTTCTATTC	0.592													18	50					3.99206e-14	4.0891e-14	0.007413	1	0
C10orf79	80217	broad.mit.edu	37	10	105974173	105974173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:105974173G>A	uc001kxw.2	-	4	544	c.428C>T	c.(427-429)TCG>TTG	p.S143L	C10orf79_uc001kxx.3_Missense_Mutation_p.S143L|C10orf79_uc001kxy.1_Missense_Mutation_p.S143L|C10orf79_uc001kxz.2_Missense_Mutation_p.S143L	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	143	WD 1.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		AATGATACTCGATTCCCAGTT	0.328													6	12					0	0	0.001984	0	0
SORCS3	22986	broad.mit.edu	37	10	106924109	106924109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:106924109C>T	uc001kyi.1	+	12	2008	c.1781C>T	c.(1780-1782)TCC>TTC	p.S594F		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	594	BNR 5.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GTGTTCATCTCCTCCGATGGG	0.438													12	18					0	0	0.001855	0	0
TDRD1	56165	broad.mit.edu	37	10	115985945	115985945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:115985945C>T	uc001lbg.1	+	22	3298	c.3145C>T	c.(3145-3147)CCT>TCT	p.P1049S	TDRD1_uc001lbf.2_Missense_Mutation_p.P926S|TDRD1_uc001lbh.1_Missense_Mutation_p.P1036S|TDRD1_uc001lbi.1_Missense_Mutation_p.P1040S|TDRD1_uc010qsc.1_Missense_Mutation_p.P653S|TDRD1_uc001lbj.2_Missense_Mutation_p.P758S	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	1049					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		CCTGGCGCTTCCTTTCCAAAT	0.408													5	15					0	0	0.000602	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116064521	116064521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:116064521G>A	uc001lbn.2	-	11	1542	c.1241C>T	c.(1240-1242)TCC>TTC	p.S414F	AFAP1L2_uc001lbo.2_Missense_Mutation_p.S414F|AFAP1L2_uc010qse.1_Missense_Mutation_p.S467F|AFAP1L2_uc001lbp.2_Missense_Mutation_p.S442F|AFAP1L2_uc001lbr.1_Missense_Mutation_p.S414F|AFAP1L2_uc010qsd.1_5'UTR|AFAP1L2_uc001lbq.1_5'Flank	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	414	PH 2.				inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		GATGCGGAAGGAGTAGAGGTG	0.682													3	14					0	0	0.004672	0	0
GRK5	2869	broad.mit.edu	37	10	121196334	121196334	+	Missense_Mutation	SNP	C	T	T	rs145397190	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:121196334C>T	uc001led.2	+	9	1143	c.910C>T	c.(910-912)CGT>TGT	p.R304C	GRK5_uc009xzh.2_Missense_Mutation_p.R199C|GRK5_uc010qta.1_Missense_Mutation_p.R199C	NM_005308	NP_005299	P34947	GRK5_HUMAN	G protein-coupled receptor kinase 5	304	Protein kinase.				G-protein signaling, coupled to cAMP nucleotide second messenger|regulation of G-protein coupled receptor protein signaling pathway|tachykinin receptor signaling pathway	cytoplasm|plasma membrane|soluble fraction	ATP binding|G-protein coupled receptor kinase activity|phospholipid binding|protein kinase C binding|signal transducer activity			lung(2)|stomach(1)	3		Lung NSC(174;0.0971)|all_lung(145;0.127)|Ovarian(717;0.249)		all cancers(201;0.0227)		AGACCTCCACCGTGAGAACAC	0.597													8	9					0	0	0.003080	0	0
CPXM2	119587	broad.mit.edu	37	10	125530537	125530537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:125530537C>T	uc001lhk.1	-	8	1322	c.997G>A	c.(997-999)GAA>AAA	p.E333K	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	333					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GGACACATTTCATTCACAACT	0.433													55	71					0	0	0.003610	0	0
DOCK1	1793	broad.mit.edu	37	10	128830008	128830008	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:128830008C>T	uc001ljt.2	+	17	1720	c.1656C>T	c.(1654-1656)ATC>ATT	p.I552I	DOCK1_uc010qun.1_Silent_p.I573I	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	552	DHR-1.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		ACGATCTTATCGTCTATAAGG	0.438													21	32					0	0	0.002780	0	0
ANO9	338440	broad.mit.edu	37	11	420587	420587	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:420587G>A	uc001lpi.2	-	19	1747	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	ANO9_uc001lph.2_Silent_p.F247F|ANO9_uc010qvv.1_Silent_p.F410F	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	554	Helical; (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						AGGCGGCCACGAAGATGGTGG	0.692													6	13					0	0	0.001984	0	0
IRF7	3665	broad.mit.edu	37	11	613290	613290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:613290C>T	uc001lqh.2	-	9	1523	c.1153G>A	c.(1153-1155)GGC>AGC	p.G385S	IRF7_uc009ycb.2_Missense_Mutation_p.G279S|IRF7_uc010qwf.1_Missense_Mutation_p.G384S|IRF7_uc001lqf.2_Missense_Mutation_p.G92S|IRF7_uc010qwg.1_Missense_Mutation_p.G92S|IRF7_uc001lqg.2_Missense_Mutation_p.G398S|IRF7_uc001lqi.2_Missense_Mutation_p.G356S|IRF7_uc010qwh.1_Missense_Mutation_p.G92S	NM_001572	NP_001563	Q92985	IRF7_HUMAN	interferon regulatory factor 7 isoform a	385					interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of interferon-alpha production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(49;1.69e-08)|all_epithelial(84;1.65e-05)|Breast(177;0.000231)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;7.68e-28)|Epithelial(43;7.44e-27)|OV - Ovarian serous cystadenocarcinoma(40;3.53e-21)|BRCA - Breast invasive adenocarcinoma(625;6.96e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTGGCGGAGCCTGGGGGTCCG	0.672													16	23					0	0	0.004007	0	0
IGF2AS	51214	broad.mit.edu	37	11	2161916	2161916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:2161916G>A	uc010qxi.1	+	1	180	c.43G>A	c.(43-45)GAG>AAG	p.E15K	IGF2_uc001lvg.2_5'Flank|IGF2_uc009ydf.2_Intron|IGF2_uc001lvh.2_Intron|INS-IGF2_uc001lvi.2_Intron|IGF2AS_uc001lvk.1_RNA|IGF2AS_uc001lvl.1_RNA	NM_016412	NP_057496			RecName: Full=Putative insulin-like growth factor 2 antisense gene protein;          Short=IGF2-AS; AltName: Full=PEG8/IGF2AS protein;												0		all_epithelial(84;0.00018)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.00388)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;0.0025)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		CGCCCAGCAGGAGCGAGCGCA	0.706													6	4					0	0	0.001984	0	0
OR51D1	390038	broad.mit.edu	37	11	4661821	4661821	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:4661821C>T	uc010qyk.1	+	1	801	c.801C>T	c.(799-801)CCC>CCT	p.P267P		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	267	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCTATGTACCCCTCATTGGGC	0.557													36	61					0	0	0.003755	0	0
OR51E2	81285	broad.mit.edu	37	11	4703151	4703151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:4703151C>T	uc001lzk.2	-	2	1035	c.791G>A	c.(790-792)GGA>GAA	p.G264E		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		AAGGCTGTTTCCAAAGCGGTG	0.517													18	30					0	0	0.004990	0	0
OR51M1	390059	broad.mit.edu	37	11	5411136	5411136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:5411136C>T	uc010qzc.1	+	1	508	c.508C>T	c.(508-510)CCT>TCT	p.P170S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	170						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCCACTATCCCTATTGTCCT	0.547													49	124					0	0	0.003610	0	0
OR51I1	390063	broad.mit.edu	37	11	5462528	5462528	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:5462528G>A	uc010qze.1	-	1	217	c.217C>T	c.(217-219)CTG>TTG	p.L73L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GACACTCCCAGATCATTGAGA	0.463													23	27					0	0	0.002299	0	0
OR51I1	390063	broad.mit.edu	37	11	5462652	5462652	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:5462652C>T	uc010qze.1	-	1	93	c.93G>A	c.(91-93)CTG>CTA	p.L31L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCAGAAAATCAGGGCAACCC	0.537													17	49					0	0	0.004990	0	0
OR52N4	390072	broad.mit.edu	37	11	5776591	5776591	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:5776591G>A	uc001mbu.2	+	1	669	c.621G>A	c.(619-621)CTG>CTA	p.L207L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		TTGCCCTCCTGATTTGGGGCT	0.488													27	49					0	0	0.005443	0	0
OR52E4	390081	broad.mit.edu	37	11	5906188	5906188	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:5906188C>T	uc010qzs.1	+	1	666	c.666C>T	c.(664-666)ATC>ATT	p.I222I	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGTGCTTATCCTTAGAGCTG	0.423													5	44					0	0	0.001882	0	0
TRIM3	10612	broad.mit.edu	37	11	6472639	6472639	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:6472639G>A	uc001mdh.2	-	9	1950	c.1563C>T	c.(1561-1563)TTC>TTT	p.F521F	TRIM3_uc001mdi.2_Silent_p.F521F|TRIM3_uc010raj.1_Silent_p.F402F|TRIM3_uc009yfd.2_Silent_p.F521F|TRIM3_uc010rak.1_Silent_p.F521F	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	521	NHL 2.				nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCCAAAACGGAACTTGAACT	0.582													19	41					0	0	0.001882	0	0
ARFIP2	23647	broad.mit.edu	37	11	6500164	6500164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:6500164C>T	uc001mdk.2	-	5	478	c.341G>A	c.(340-342)CGA>CAA	p.R114Q	ARFIP2_uc001mdl.2_Missense_Mutation_p.R114Q|ARFIP2_uc010ral.1_Missense_Mutation_p.R76Q|ARFIP2_uc010ram.1_Missense_Mutation_p.R20Q|ARFIP2_uc010ran.1_Missense_Mutation_p.R147Q|ARFIP2_uc001mdm.2_RNA|FXC1_uc001mdn.3_5'Flank|FXC1_uc001mdo.3_5'Flank	NM_012402	NP_036534	P53365	ARFP2_HUMAN	ADP-ribosylation factor interacting protein 2	114					actin cytoskeleton organization|cellular component movement|lamellipodium assembly|ruffle organization|small GTPase mediated signal transduction	cell cortex|plasma membrane|ruffle	GTP binding|GTP-dependent protein binding|Rac GTPase binding				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;3.41e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCGACCAAATCGTTCTGATAA	0.537													6	16					0	0	0.001984	0	0
OR10A5	144124	broad.mit.edu	37	11	6867102	6867102	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:6867102C>T	uc001met.1	+	1	189	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGTACTTCTTCCTCAGAAACT	0.473													35	82					0	0	0.003610	0	0
OR2D3	120775	broad.mit.edu	37	11	6942260	6942260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:6942260G>A	uc010rav.1	+	1	28	c.28G>A	c.(28-30)GGT>AGT	p.G10S		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GTGCCAAACAGGTAAACAGGC	0.398													6	24					0	0	0.001168	0	0
ZNF214	7761	broad.mit.edu	37	11	7021860	7021860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:7021860G>A	uc001mfa.2	-	3	1357	c.1054C>T	c.(1054-1056)CAC>TAC	p.H352Y	ZNF214_uc010ray.1_Missense_Mutation_p.H352Y|ZNF214_uc009yfh.1_Missense_Mutation_p.H352Y	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	352	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TCTCCTATGTGAAGTCTCTGG	0.368													6	33					0	0	0.001168	0	0
NLRP10	338322	broad.mit.edu	37	11	7984979	7984979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:7984979C>T	uc001mfv.1	-	1	81	c.64G>A	c.(64-66)GAG>AAG	p.E22K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	22	DAPIN.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AAATCGTTCTCCTCAAGGTCA	0.567													7	29					0	0	0.004482	0	0
USP47	55031	broad.mit.edu	37	11	11919184	11919184	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:11919184G>A	uc001mjq.1	+	6	1360	c.597G>A	c.(595-597)TTG>TTA	p.L199L	USP47_uc001mjr.2_Silent_p.L111L|USP47_uc001mjs.2_Silent_p.L179L	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	199					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		CTTGCTATTTGAATAGCCTTT	0.259													19	41					0	0	0.001882	0	0
PTH	5741	broad.mit.edu	37	11	13514157	13514157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:13514157G>A	uc001mlb.2	-	3	258	c.143C>T	c.(142-144)TCG>TTG	p.S48L		NM_000315	NP_000306	P01270	PTHY_HUMAN	parathyroid hormone preproprotein	48					bone resorption|cAMP metabolic process|cell-cell signaling|cellular calcium ion homeostasis|cellular macromolecule biosynthetic process|induction of apoptosis by hormones|positive regulation of cAMP biosynthetic process|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|skeletal system development		hormone activity|peptide hormone receptor binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(625;0.00116)|Epithelial(150;0.0357)|LUSC - Lung squamous cell carcinoma(625;0.0836)		TCTCTCCATCGAGTTCAGATG	0.498													24	39					0	0	0.006320	0	0
LOC494141	494141	broad.mit.edu	37	11	18231632	18231632	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:18231632G>A	uc009yhh.2	+	2		c.656G>A			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						AGGGACAACGGAAGCAATTTT	0.458													9	15					0	0	0.004482	0	0
PTPN5	84867	broad.mit.edu	37	11	18754168	18754168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:18754168C>T	uc001mpd.2	-	12	1731	c.1300G>A	c.(1300-1302)GAT>AAT	p.D434N	PTPN5_uc001mpb.2_Missense_Mutation_p.D402N|PTPN5_uc001mpc.2_Missense_Mutation_p.D434N|PTPN5_uc001mpe.2_Missense_Mutation_p.D402N|PTPN5_uc010rdj.1_Missense_Mutation_p.D378N|PTPN5_uc001mpf.2_Missense_Mutation_p.D410N|PTPN5_uc010rdk.1_Missense_Mutation_p.D379N	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	434	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						AGCCGGTAATCCTCCGTGTGA	0.587											OREG0020824	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	92					0	0	0.003214	0	0
LUZP2	338645	broad.mit.edu	37	11	24936055	24936055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:24936055C>T	uc001mqs.2	+	7	727	c.493C>T	c.(493-495)CGT>TGT	p.R165C	LUZP2_uc009yif.2_Missense_Mutation_p.R79C|LUZP2_uc009yig.2_Intron	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	165	Potential.|Leucine-zipper.					extracellular region				ovary(1)|skin(1)	2						GAAGGAGCTTCGTTATGGGAA	0.318													7	17					0	0	0.004482	0	0
BBOX1	8424	broad.mit.edu	37	11	27077077	27077077	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:27077077T>C	uc001mre.1	+	3	468	c.100T>C	c.(100-102)TTG>CTG	p.L34L	BBOX1_uc009yih.1_Silent_p.L34L|BBOX1_uc001mrg.1_Silent_p.L34L	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	34					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	AGCTGTATGGTTGAGAGACAA	0.473													13	21					0	0	0.001855	0	0
API5	8539	broad.mit.edu	37	11	43364037	43364037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:43364037C>T	uc010rfh.1	+	14	1725	c.1552C>T	c.(1552-1554)CGT>TGT	p.R518C	API5_uc010rfg.1_Missense_Mutation_p.R507C|API5_uc001mxf.2_3'UTR|API5_uc010rfi.1_3'UTR	NM_001142930	NP_001136402	Q9BZZ5	API5_HUMAN	apoptosis inhibitor 5 isoform a	Error:Variant_position_missing_in_Q9BZZ5_after_alignment					anti-apoptosis|apoptosis	cytoplasm|spliceosomal complex	fibroblast growth factor binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						ACGAGGAAATCGTAGTCGGGG	0.463													5	33					0	0	0.001168	0	0
CHST1	8534	broad.mit.edu	37	11	45671428	45671428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:45671428G>A	uc001mys.1	-	4	1717	c.1046C>T	c.(1045-1047)ACC>ATC	p.T349I		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	349	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GTTTCGCACGGTGCCGTATTT	0.667													21	47					0	0	0.002780	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45945705	45945705	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:45945705G>A	uc001nbv.1	+	4	480	c.369G>A	c.(367-369)AGG>AGA	p.R123R	GYLTL1B_uc001nbw.1_Silent_p.R92R|GYLTL1B_uc001nbx.1_Silent_p.R123R|GYLTL1B_uc001nby.1_5'Flank	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	123	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		CACCCAAAAGGAAAAATCCAC	0.597													17	25					0	0	0.007413	0	0
CKAP5	9793	broad.mit.edu	37	11	46800070	46800070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:46800070C>T	uc001ndi.1	-	21	2623	c.2513G>A	c.(2512-2514)GGA>GAA	p.G838E	CKAP5_uc009ylg.1_Missense_Mutation_p.G724E|CKAP5_uc001ndj.1_Missense_Mutation_p.G838E	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	838					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						TGGTTCATCTCCATCTTCTCC	0.443													20	31					0	0	0.010504	0	0
FNBP4	23360	broad.mit.edu	37	11	47744803	47744803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:47744803G>A	uc009ylv.2	-	15	2683	c.2530C>T	c.(2530-2532)CTT>TTT	p.L844F	FNBP4_uc001ngi.2_Missense_Mutation_p.L158F|FNBP4_uc001ngj.2_Missense_Mutation_p.L751F	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	844										ovary(1)	1						GCTGCTGGAAGGCTAACTGGT	0.458													29	56					0	0	0.004289	0	0
OR4X2	119764	broad.mit.edu	37	11	48267098	48267098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:48267098C>T	uc001ngs.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCATGCATTCCTTTGCACAA	0.498													33	75					0	0	0.003271	0	0
OR4X2	119764	broad.mit.edu	37	11	48267238	48267238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:48267238G>A	uc001ngs.1	+	1	583	c.583G>A	c.(583-585)GGA>AGA	p.G195R		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	195	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTTGCCAATGGAGGCACCCT	0.498													43	94					0	0	0.002522	0	0
OR4C13	283092	broad.mit.edu	37	11	49974138	49974138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:49974138C>T	uc010rhz.1	+	1	164	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TCACTGAGATCCCCCATGTAC	0.428													48	100					0	0	0.003610	0	0
OR4A5	81318	broad.mit.edu	37	11	51411976	51411976	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:51411976G>A	uc001nhi.1	-	1	420	c.420C>T	c.(418-420)TTC>TTT	p.F140F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				CCAACAGAAGGAAGCAAACCT	0.473													13	21					0	0	0.001855	0	0
OR4C46	119749	broad.mit.edu	37	11	51515548	51515548	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:51515548C>T	uc010ric.1	+	1	267	c.267C>T	c.(265-267)GCC>GCT	p.A89A		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GAAAGAAGGCCATCCTATTCA	0.463													29	74					0	0	0.007291	0	0
OR4C46	119749	broad.mit.edu	37	11	51515764	51515764	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:51515764C>T	uc010ric.1	+	1	483	c.483C>T	c.(481-483)ATC>ATT	p.I161I		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCTCTTCATCTTCCAATTAC	0.463													27	46					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	11	55065005	55065005	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:55065005C>T	uc001nhl.1	-	2		c.418G>A								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		CTGAGATTTTCACAAGCTTTT	0.398													5	19					0	0	0.001984	0	0
OR4A16	81327	broad.mit.edu	37	11	55111335	55111335	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:55111335T>C	uc010rie.1	+	1	659	c.659T>C	c.(658-660)CTA>CCA	p.L220P		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						GGAGTCATCCTAAACTTCCTT	0.438													21	62					0	0	0.002780	0	0
OR4C11	219429	broad.mit.edu	37	11	55371798	55371798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:55371798C>T	uc010rii.1	-	1	52	c.52G>A	c.(52-54)GAT>AAT	p.D18N		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTCAAGGGATCCTGTGTTAAT	0.383													17	12					0	0	0.004007	0	0
OR5D13	390142	broad.mit.edu	37	11	55541018	55541018	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:55541018C>T	uc010ril.1	+	1	105	c.105C>T	c.(103-105)TTC>TTT	p.F35F		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TTTTCTTGTTCGTCTACACAG	0.398													22	41					0	0	0.001882	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57088096	57088096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:57088096G>A	uc001njr.2	-	2	497	c.185C>T	c.(184-186)CCT>CTT	p.P62L	TNKS1BP1_uc001njs.2_Missense_Mutation_p.P62L|TNKS1BP1_uc009ymd.1_5'UTR	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	62	Arg/Glu/Lys/Pro-rich (charged).				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				AGGCCCAACAGGCACCAGCAG	0.662													13	24					0	0	0.003163	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947813	57947813	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:57947813C>T	uc001nmj.2	+	3	1213	c.897C>T	c.(895-897)GCC>GCT	p.A299A		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				TGAAGGAGGCCCTGAGAAAAA	0.478													8	18					0	0	0.004482	0	0
OR4D9	390199	broad.mit.edu	37	11	59282701	59282701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:59282701C>T	uc010rkv.1	+	1	316	c.316C>T	c.(316-318)CTT>TTT	p.L106F		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTCTTCCACCTTCTGGGGGG	0.478													19	48					0	0	0.007413	0	0
MS4A2	2206	broad.mit.edu	37	11	59861027	59861027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:59861027C>T	uc001nop.2	+	5	635	c.533C>T	c.(532-534)TCC>TTC	p.S178F	MS4A2_uc009ymu.2_Missense_Mutation_p.S178F	NM_000139	NP_000130	Q01362	FCERB_HUMAN	membrane-spanning 4-domains, subfamily A, member	178	Extracellular (Potential).				cell proliferation|humoral immune response	integral to plasma membrane	calcium channel activity			ovary(1)	1		all_epithelial(135;0.245)			Omalizumab(DB00043)	GCTTCCTTTTCCACTGTATGT	0.408													12	34					0	0	0.001368	0	0
MARK2	2011	broad.mit.edu	37	11	63670575	63670575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:63670575C>T	uc001nxw.2	+	14	2038	c.1459C>T	c.(1459-1461)CCA>TCA	p.P487S	MARK2_uc001nxx.2_Missense_Mutation_p.P487S|MARK2_uc001nxy.2_Missense_Mutation_p.P486S|MARK2_uc001nxv.3_Missense_Mutation_p.P486S|MARK2_uc001nxz.3_Missense_Mutation_p.P453S|MARK2_uc009yoy.2_Missense_Mutation_p.P453S	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	487					cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						CAGGAATTCCCCACTTTTGGA	0.577													26	66					0	0	0.002096	0	0
NRXN2	9379	broad.mit.edu	37	11	64453402	64453402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:64453402C>T	uc001oar.2	-	7	1307	c.868G>A	c.(868-870)GCG>ACG	p.A290T	NRXN2_uc001oas.2_Missense_Mutation_p.A266T|NRXN2_uc001oaq.2_5'UTR	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TTGAAGGTCGCCACAAACTCC	0.582													10	24					0	0	0.008291	0	0
MAP3K11	4296	broad.mit.edu	37	11	65367008	65367008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:65367008G>A	uc001oew.2	-	9	2556	c.2063C>T	c.(2062-2064)ACC>ATC	p.T688I	MAP3K11_uc001oev.2_Missense_Mutation_p.T104I|MAP3K11_uc010rol.1_Missense_Mutation_p.T431I|MAP3K11_uc001oex.1_Missense_Mutation_p.T195I	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	688	Pro-rich.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						GGGCGGCTCGGTCGGGCAGGG	0.741													23	40					0	0	0.004656	0	0
NPAS4	266743	broad.mit.edu	37	11	66191166	66191166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:66191166C>T	uc001ohx.1	+	6	1102	c.926C>T	c.(925-927)GCC>GTC	p.A309V	NPAS4_uc010rpc.1_Missense_Mutation_p.A99V	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	309	PAC.				transcription, DNA-dependent		DNA binding|signal transducer activity				0						CCCATTACTGCCAATAACTAC	0.532													12	42					0	0	0.000978	0	0
BBS1	582	broad.mit.edu	37	11	66278144	66278144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:66278144C>T	uc001oij.1	+	1	26	c.14C>T	c.(13-15)TCC>TTC	p.S5F	BBS1_uc001oii.1_Intron|BBS1_uc010rpf.1_RNA|BBS1_uc010rpg.1_Missense_Mutation_p.S5F|BBS1_uc001oik.1_5'UTR|BBS1_uc001oil.1_Missense_Mutation_p.S5F	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	5					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						GCCGCTGCGTCCTCATCGGAT	0.647									Bardet-Biedl_syndrome				17	21					0	0	0.006122	0	0
CCDC87	55231	broad.mit.edu	37	11	66359889	66359889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:66359889G>A	uc001oiq.3	-	1	666	c.598C>T	c.(598-600)CCC>TCC	p.P200S	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	200										ovary(1)|skin(1)	2						GTCCCAGCGGGGCAGACAGGG	0.607													9	25					0	0	0.008291	0	0
CHKA	1119	broad.mit.edu	37	11	67832028	67832028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:67832028G>A	uc001onj.2	-	10	1410	c.1196C>T	c.(1195-1197)TCC>TTC	p.S399F	CHKA_uc001onk.2_Missense_Mutation_p.S381F	NM_001277	NP_001268	P35790	CHKA_HUMAN	choline kinase alpha isoform a	399					lipid transport|phosphatidylethanolamine biosynthetic process	cytoplasm	ATP binding|choline kinase activity|drug binding|ethanolamine kinase activity|signal transducer activity			ovary(1)|central_nervous_system(1)	2					Choline(DB00122)	TTTTATAATGGATTTTTCTTC	0.294													4	10					0	0	0.009096	0	0
NADSYN1	55191	broad.mit.edu	37	11	71185492	71185492	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:71185492C>T	uc001oqn.2	+	9	844	c.718C>T	c.(718-720)CTG>TTG	p.L240L	NADSYN1_uc001oqm.2_RNA|NADSYN1_uc001oqo.2_5'UTR	NM_018161	NP_060631	Q6IA69	NADE_HUMAN	NAD synthetase 1	240	CN hydrolase.				NAD biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|NAD+ synthase (glutamine-hydrolyzing) activity|protein binding			ovary(2)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CGGGGACCGCCTGTACTACGA	0.562													17	52					0	0	0.010504	0	0
FOLR1	2348	broad.mit.edu	37	11	71906446	71906446	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:71906446C>T	uc001orz.1	+	4	438	c.300C>T	c.(298-300)TTC>TTT	p.F100F	FOLR1_uc001osa.1_Silent_p.F100F|FOLR1_uc001osb.1_Silent_p.F100F|FOLR1_uc001osc.1_Silent_p.F100F|FOLR1_uc001osd.1_Silent_p.F100F	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	100					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						AACGGCATTTCATCCAGGACA	0.547													36	111					0	0	0.008740	0	0
INPPL1	3636	broad.mit.edu	37	11	71942105	71942105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:71942105G>A	uc001osf.2	+	12	1516	c.1369G>A	c.(1369-1371)GAG>AAG	p.E457K	INPPL1_uc001osg.2_Missense_Mutation_p.E215K	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	457					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						GACCCTGGACGAGGTCACAGT	0.587													42	113					0	0	0.007835	0	0
INPPL1	3636	broad.mit.edu	37	11	71944756	71944756	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:71944756T>C	uc001osf.2	+	19	2327	c.2180T>C	c.(2179-2181)GTT>GCT	p.V727A	INPPL1_uc001osg.2_Missense_Mutation_p.V485A	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	727					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						ACATTTGAGGTTGGAGTTACC	0.542													18	60					0	0	0.002780	0	0
UCP3	7352	broad.mit.edu	37	11	73712518	73712518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:73712518G>A	uc001our.2	-	7	1233	c.878C>T	c.(877-879)ACC>ATC	p.T293I		NM_003356	NP_003347	P55916	UCP3_HUMAN	uncoupling protein 3 isoform UCP3L	293	Purine nucleotide binding (By similarity).|Helical; Name=6; (Potential).|Solcar 3.				mitochondrial transport|respiratory electron transport chain|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	binding			pancreas(1)	1	Breast(11;2.08e-05)					CTGCTCATAGGTTACGAACAT	0.478													7	24					0	0	0.003080	0	0
P4HA3	283208	broad.mit.edu	37	11	73990439	73990439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:73990439C>T	uc001ouz.2	-	8	1212	c.1169G>A	c.(1168-1170)AGC>AAC	p.S390N	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.S390N	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	390						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					TTACCTTTTGCTGATGCGGTA	0.537													34	79					0	0	0.004878	0	0
P4HA3	283208	broad.mit.edu	37	11	74015355	74015355	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:74015355C>T	uc001ouz.2	-	2	346	c.303G>A	c.(301-303)AGG>AGA	p.R101R	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Silent_p.R101R	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	101						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					GTACCACATTCCTCCAGTCAG	0.493													61	92					0	0	0.003610	0	0
RPS3	6188	broad.mit.edu	37	11	75115202	75115202	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:75115202T>C	uc001owh.2	+	5	519	c.489T>C	c.(487-489)CCT>CCC	p.P163P	RPS3_uc001owi.2_Silent_p.P163P|RPS3_uc001owk.1_Silent_p.P37P|SNORD15B_uc001owl.1_5'Flank	NM_001005	NP_000996	P23396	RS3_HUMAN	ribosomal protein S3	163					activation of caspase activity|endocrine pancreas development|induction of apoptosis|negative regulation of DNA repair|negative regulation of NF-kappaB transcription factor activity|response to DNA damage stimulus|translational elongation|translational initiation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleus|ruffle membrane	damaged DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|endonuclease activity|iron-sulfur cluster binding|mRNA binding|NF-kappaB binding|protein kinase binding|structural constituent of ribosome				0						GCGGAGACCCTGTTAACTACT	0.537													22	26					0	0	0.002299	0	0
ODZ4	26011	broad.mit.edu	37	11	78413036	78413036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:78413036G>A	uc001ozl.3	-	28	5085	c.4622C>T	c.(4621-4623)TCC>TTC	p.S1541F	ODZ4_uc009yvb.1_Missense_Mutation_p.S125F	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1541	NHL 5.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CACAGCCAAGGAAGATGGGGT	0.502													8	23					0	0	0.003080	0	0
C11orf73	51501	broad.mit.edu	37	11	86017395	86017395	+	Missense_Mutation	SNP	C	T	T	rs11539213		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:86017395C>T	uc001pbu.2	+	2	377	c.139C>T	c.(139-141)CCT>TCT	p.P47S	C11orf73_uc001pbt.2_Missense_Mutation_p.P47S|C11orf73_uc010rto.1_Intron|C11orf73_uc010rtp.1_Intron|C11orf73_uc001pbv.2_RNA	NM_016401	NP_057485	Q53FT3	CK073_HUMAN	lethal, Chr 7, Rinchik 6	47						cytoplasm					0		Acute lymphoblastic leukemia(157;1.17e-07)|all_hematologic(158;0.000556)				AATCCCATTTCCTGAGGGAAT	0.423													12	31					0	0	0.000978	0	0
CCDC81	60494	broad.mit.edu	37	11	86126160	86126160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:86126160C>T	uc001pbx.1	+	13	1924	c.1496C>T	c.(1495-1497)CCC>CTC	p.P499L	CCDC81_uc001pbw.1_Missense_Mutation_p.P409L|CCDC81_uc010rtq.1_Missense_Mutation_p.P282L|CCDC81_uc001pby.1_Missense_Mutation_p.P234L	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	499										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				TCTCGGCTGCCCCCCTTTGAG	0.438													19	41					0	0	0.002780	0	0
TMEM135	65084	broad.mit.edu	37	11	87032329	87032329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:87032329C>T	uc001pch.2	+	15	1354	c.1331C>T	c.(1330-1332)CCA>CTA	p.P444L	TMEM135_uc010rtt.1_Missense_Mutation_p.P305L|TMEM135_uc001pci.2_Missense_Mutation_p.P422L	NM_022918	NP_075069	Q86UB9	TM135_HUMAN	transmembrane protein 135	444						integral to membrane					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				AGGTTGGATCCAAGATACACA	0.373													7	31					0	0	0.006214	0	0
FAT3	120114	broad.mit.edu	37	11	92085367	92085367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:92085367C>T	uc001pdj.3	+	1	106	c.89C>T	c.(88-90)TCC>TTC	p.S30F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	30					homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCCACTGTCTCCCAGGGGCTG	0.512										TCGA Ovarian(4;0.039)			175	447					0	0	0.003610	0	0
CCDC67	159989	broad.mit.edu	37	11	93148173	93148173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:93148173C>T	uc001pdq.2	+	13	1631	c.1531C>T	c.(1531-1533)CAT>TAT	p.H511Y	CCDC67_uc001pdo.1_Missense_Mutation_p.H511Y	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	511										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				TAGACTTAGTCATGACTGTGA	0.383													21	46					0	0	0.008871	0	0
MRE11A	4361	broad.mit.edu	37	11	94204874	94204874	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:94204874G>A	uc001peu.2	-	8	900	c.711C>T	c.(709-711)TTC>TTT	p.F237F	MRE11A_uc001pev.2_Silent_p.F237F|MRE11A_uc009ywj.2_Silent_p.F240F	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	237			F -> C (in a breast cancer sample; somatic mutation).		DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity	p.F237C(1)		breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				CAAGATCAATGAAGTCATCCA	0.343								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				15	22					0	0	0.003163	0	0
MMP27	64066	broad.mit.edu	37	11	102565806	102565806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:102565806C>T	uc001phd.1	-	7	948	c.925G>A	c.(925-927)GAT>AAT	p.D309N		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	309	Hemopexin-like 1.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		TCCGTGATATCATAATAGATC	0.403													11	34					0	0	0.000978	0	0
MMP13	4322	broad.mit.edu	37	11	102824925	102824925	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:102824925G>A	uc001phl.2	-	4	625	c.597C>T	c.(595-597)GCC>GCT	p.A199A		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	199					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		CATCAAAATGGGCATCTCCTC	0.423													6	29					0	0	0.001984	0	0
USP28	57646	broad.mit.edu	37	11	113700029	113700029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:113700029G>A	uc001poh.2	-	10	982	c.949C>T	c.(949-951)CCT>TCT	p.P317S	USP28_uc001pog.2_Missense_Mutation_p.P25S|USP28_uc010rwy.1_Missense_Mutation_p.P192S|USP28_uc001poi.2_5'UTR|USP28_uc001poj.3_Missense_Mutation_p.P317S	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	317					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		ACCTGAAGAGGATACTGGCCG	0.443													19	25					0	0	0.008871	0	0
NNMT	4837	broad.mit.edu	37	11	114182969	114182969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:114182969C>T	uc001por.1	+	5	829	c.565C>T	c.(565-567)CCA>TCA	p.P189S	NNMT_uc001pos.1_Missense_Mutation_p.P189S	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	189					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	CCTACTGAAGCCAGGGGGCTT	0.627													13	45					0	0	0.002450	0	0
APOA1	335	broad.mit.edu	37	11	116707761	116707761	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:116707761G>A	uc001ppu.1	-	3	235	c.156C>T	c.(154-156)GAC>GAT	p.D52D	APOA1_uc001ppv.1_Silent_p.D52D	NM_000039	NP_000030	P02647	APOA1_HUMAN	apolipoprotein A-I preproprotein	52					Cdc42 protein signal transduction|cholesterol efflux|cholesterol homeostasis|cholesterol import|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|negative regulation of cytokine secretion involved in immune response|negative regulation of interleukin-1 beta secretion|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid efflux|platelet activation|platelet degranulation|positive regulation of cholesterol esterification|positive regulation of hydrolase activity|protein stabilization|reverse cholesterol transport	endocytic vesicle|endoplasmic reticulum lumen|plasma membrane|spherical high-density lipoprotein particle|stored secretory granule|very-low-density lipoprotein particle	apolipoprotein A-I receptor binding|beta-amyloid binding|cholesterol binding|cholesterol transporter activity|enzyme binding|high-density lipoprotein particle receptor binding|identical protein binding|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding				0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.59e-05)|all cancers(92;0.000162)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		GGGACACATAGTCTCTGCCGC	0.592													107	237					0	0	0.003610	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117776419	117776419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:117776419C>T	uc001prs.1	-	10	1408	c.1315G>A	c.(1315-1317)GGA>AGA	p.G439R	TMPRSS13_uc009yzr.1_Missense_Mutation_p.G118R|TMPRSS13_uc001prt.1_Missense_Mutation_p.G118R	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	434	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		AAGGTCTGTCCATGCATGGGG	0.507													4	6					0	0	0.000602	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117779493	117779493	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:117779493C>T	uc001prs.1	-	9	1209	c.1116G>A	c.(1114-1116)CGG>CGA	p.R372R	TMPRSS13_uc009yzr.1_Silent_p.R51R|TMPRSS13_uc001prt.1_Silent_p.R51R|TMPRSS13_uc001pru.1_Silent_p.R372R	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	367	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		GGACCTTCTCCCGGGTCCTGC	0.592													7	13					0	0	0.003080	0	0
MCAM	4162	broad.mit.edu	37	11	119182038	119182038	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:119182038C>A	uc001pwf.2	-	12	1530	c.1501G>T	c.(1501-1503)GCC>TCC	p.A501S	MCAM_uc001pwg.1_5'Flank	NM_006500	NP_006491	P43121	MUC18_HUMAN	melanoma cell adhesion molecule	501	Ig-like C2-type 3.|Extracellular (Potential).				anatomical structure morphogenesis|cell adhesion	integral to membrane|plasma membrane				ovary(2)|breast(1)|central_nervous_system(1)	4		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.78e-05)		TCGTTGGAGGCCGTGCATTCA	0.617													8	23					1.12685e-05	1.14573e-05	0.004482	1	0
GRIK4	2900	broad.mit.edu	37	11	120745931	120745931	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:120745931C>T	uc001pxn.2	+	11	1430	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	GRIK4_uc009zav.1_Silent_p.F381F|GRIK4_uc009zaw.1_Silent_p.F381F|GRIK4_uc009zax.1_Silent_p.F381F	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	381	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	TCTTACAGTTCACAAGGAATG	0.493													11	21					0	0	0.000978	0	0
OR6T1	219874	broad.mit.edu	37	11	123814015	123814015	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:123814015G>A	uc010sab.1	-	1	531	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TGTCACGAAAGAAGTGGTCAA	0.562													27	31					0	0	0.006320	0	0
OR8D2	283160	broad.mit.edu	37	11	124189926	124189926	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:124189926G>A	uc010sah.1	-	1	168	c.168C>T	c.(166-168)TAC>TAT	p.Y56Y		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	56	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		ACACTGGAGGGTAAAGTTGAG	0.438													11	22					0	0	0.008291	0	0
OR8B3	390271	broad.mit.edu	37	11	124266627	124266627	+	Silent	SNP	G	A	A	rs144139982		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:124266627G>A	uc010saj.1	-	1	621	c.621C>T	c.(619-621)ATC>ATT	p.I207I	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.I207I(1)		ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		TGGGTACCATGATATTAATAC	0.418													38	101					0	0	0.004289	0	0
OR8B8	26493	broad.mit.edu	37	11	124310337	124310337	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:124310337G>A	uc010sal.1	-	1	645	c.645C>T	c.(643-645)TTC>TTT	p.F215F		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		CATAGGAAATGAAGATGGTGA	0.483													20	58					0	0	0.001882	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781298	128781298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:128781298G>A	uc001qet.2	+	2	444	c.130G>A	c.(130-132)GCC>ACC	p.A44T	KCNJ5_uc009zck.2_Missense_Mutation_p.A44T|KCNJ5_uc001qew.2_Missense_Mutation_p.A44T	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	44	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	GCGCCTGCTGGCCGAGGGCAA	0.597													28	50					0	0	0.008361	0	0
KCNJ5	3762	broad.mit.edu	37	11	128786396	128786396	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:128786396T>C	uc001qet.2	+	3	1344	c.1030T>C	c.(1030-1032)TAT>CAT	p.Y344H	KCNJ5_uc009zck.2_Missense_Mutation_p.Y344H|KCNJ5_uc001qew.2_Missense_Mutation_p.Y344H	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	344	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	AAAGGGCTTCTATGAGGTGGA	0.562													42	80					0	0	0.003610	0	0
BARX2	8538	broad.mit.edu	37	11	129306737	129306737	+	Silent	SNP	C	T	T	rs149011396	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:129306737C>T	uc001qfc.3	+	2	329	c.279C>T	c.(277-279)ATC>ATT	p.I93I		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	93											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CCCCGGGAATCGCCCAGGCAC	0.677													22	53					0	0	0.002780	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790170	133790170	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:133790170G>A	uc001qgx.3	-	18	3681	c.3450C>T	c.(3448-3450)CCC>CCT	p.P1150P		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1150	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CAGCCGGCTCGGGGTAAGGCA	0.687													24	48					0	0	0.003954	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790338	133790338	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:133790338G>A	uc001qgx.3	-	18	3513	c.3282C>T	c.(3280-3282)ATC>ATT	p.I1094I		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1094	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CCAGAGACAGGATGCCCGGGT	0.716													17	27					0	0	0.006122	0	0
IGSF9B	22997	broad.mit.edu	37	11	133807341	133807341	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:133807341T>C	uc001qgx.3	-	5	840	c.609A>G	c.(607-609)AGA>AGG	p.R203R	IGSF9B_uc001qgy.1_Silent_p.R45R	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	203	Ig-like 2.|Extracellular (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TGTAGGCACCTCTGTCCTCCC	0.607													6	19					0	0	0.001984	0	0
B3GAT1	27087	broad.mit.edu	37	11	134253818	134253818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr11:134253818C>T	uc001qhq.2	-	4	638	c.377G>A	c.(376-378)CGG>CAG	p.R126Q	B3GAT1_uc001qhr.2_Missense_Mutation_p.R126Q|B3GAT1_uc010scv.1_Missense_Mutation_p.R139Q	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	126	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		CAGCGGCGTCCGGCGCGGCGC	0.711													6	11					0	0	0.001984	0	0
CACNA2D4	93589	broad.mit.edu	37	12	2027448	2027448	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:2027448G>A	uc001qjp.2	-	1	423	c.192C>T	c.(190-192)TCC>TCT	p.S64S	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.S64S	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	64	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CCCACGCAGGGGACAGGGAGG	0.622													3	11					0	0	0.004672	0	0
CACNA1C	775	broad.mit.edu	37	12	2676817	2676817	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:2676817C>T	uc009zdu.1	+	13	2065	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F	CACNA1C_uc009zdv.1_Silent_p.F581F|CACNA1C_uc001qkb.2_Silent_p.F584F|CACNA1C_uc001qkc.2_Silent_p.F584F|CACNA1C_uc001qke.2_Silent_p.F584F|CACNA1C_uc001qkf.2_Silent_p.F584F|CACNA1C_uc001qjz.2_Silent_p.F584F|CACNA1C_uc001qkd.2_Silent_p.F584F|CACNA1C_uc001qkg.2_Silent_p.F584F|CACNA1C_uc009zdw.1_Silent_p.F584F|CACNA1C_uc001qkh.2_Silent_p.F584F|CACNA1C_uc001qkl.2_Silent_p.F584F|CACNA1C_uc001qkn.2_Silent_p.F584F|CACNA1C_uc001qko.2_Silent_p.F584F|CACNA1C_uc001qkp.2_Silent_p.F584F|CACNA1C_uc001qkr.2_Silent_p.F584F|CACNA1C_uc001qku.2_Silent_p.F584F|CACNA1C_uc001qkq.2_Silent_p.F584F|CACNA1C_uc001qks.2_Silent_p.F584F|CACNA1C_uc001qkt.2_Silent_p.F584F|CACNA1C_uc001qka.1_Silent_p.F119F|CACNA1C_uc001qki.1_Silent_p.F320F|CACNA1C_uc001qkj.1_Silent_p.F320F|CACNA1C_uc001qkk.1_Silent_p.F320F|CACNA1C_uc001qkm.1_Silent_p.F320F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	584	II.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGGCCTACTTCGTGTCCCTCT	0.607													4	9					0	0	0.009096	0	0
FGF23	8074	broad.mit.edu	37	12	4479772	4479772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:4479772G>A	uc001qmq.1	-	3	639	c.493C>T	c.(493-495)CCC>TCC	p.P165S		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	165					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TGAATTAGGGGGATCTCGTTC	0.657													16	49					0	0	0.007413	0	0
GALNT8	26290	broad.mit.edu	37	12	4870183	4870183	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:4870183G>A	uc001qne.1	+	7	1325	c.1233G>A	c.(1231-1233)GAG>GAA	p.E411E		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	411	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CCCACCTAGAGAGACACCACA	0.547													19	33					0	0	0.008871	0	0
KCNA6	3742	broad.mit.edu	37	12	4920731	4920731	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:4920731G>A	uc001qng.2	+	1	2390	c.1524G>A	c.(1522-1524)CGG>CGA	p.R508R		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	508						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						ACCGGGAACGGAGACCCAGCT	0.612										HNSCC(72;0.22)			20	44					0	0	0.010504	0	0
ANO2	57101	broad.mit.edu	37	12	5915235	5915235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:5915235C>T	uc001qnm.2	-	9	1033	c.961G>A	c.(961-963)GAT>AAT	p.D321N		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	326	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TCATTCATATCGTCCTCTGGA	0.478													4	16					0	0	0.000602	0	0
ATN1	1822	broad.mit.edu	37	12	7047862	7047862	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:7047862C>T	uc001qrw.1	+	7	2973	c.2736C>T	c.(2734-2736)GAC>GAT	p.D912D	ATN1_uc001qrx.1_Silent_p.D912D	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	912					cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GGGCAGTGGACCCGGGGCTCC	0.627													30	86					0	0	0.007291	0	0
CLSTN3	9746	broad.mit.edu	37	12	7288818	7288818	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:7288818C>T	uc001qsr.2	+	6	1037	c.759C>T	c.(757-759)ATC>ATT	p.I253I	CLSTN3_uc001qss.2_Silent_p.I265I	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	253	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						ACAAAAGGATCGAATATGCAC	0.552													20	33					0	0	0.010504	0	0
CD163L1	283316	broad.mit.edu	37	12	7559373	7559373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:7559373C>T	uc001qsy.2	-	5	868	c.842G>A	c.(841-843)GGA>GAA	p.G281E	CD163L1_uc010sge.1_Missense_Mutation_p.G291E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	281	SRCR 3.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CCCCCACCTTCCTTGGATTTT	0.478													19	56					0	0	0.008871	0	0
KLRB1	3820	broad.mit.edu	37	12	9760381	9760381	+	Missense_Mutation	SNP	C	T	T	rs144231382	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:9760381C>T	uc010sgt.1	-	1	117	c.55G>A	c.(55-57)GAA>AAA	p.E19K		NM_002258	NP_002249	Q12918	KLRB1_HUMAN	killer cell lectin-like receptor subfamily B,	19	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						GAAGAACTTTCTGGGCCTGAG	0.413													19	45					0	0	0.001882	0	0
KLRK1	22914	broad.mit.edu	37	12	10532306	10532306	+	Silent	SNP	G	A	A	rs148179014		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:10532306G>A	uc009zhj.2	-	4	398	c.234C>T	c.(232-234)TTC>TTT	p.F78F	uc001qya.1_RNA|KLRK1_uc001qyb.2_RNA|KLRK1_uc001qyc.2_Silent_p.F78F|KLRK1_uc009zhk.2_Silent_p.F78F|KLRK1_uc001qyd.2_Silent_p.F78F	NM_007360	NP_031386	P26718	NKG2D_HUMAN	NKG2-D type II integral membrane protein	78	Extracellular (Potential).				natural killer cell activation|T cell costimulation	integral to plasma membrane	sugar binding				0						TACAGTTTAGGAATACAGCAC	0.328													4	35					0	0	0.009096	0	0
STYK1	55359	broad.mit.edu	37	12	10783863	10783863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:10783863C>T	uc001qys.2	-	5	753	c.232G>A	c.(232-234)GGA>AGA	p.G78R		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	78						integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						CCTCCATGTCCTGCTTCCCAG	0.562										HNSCC(73;0.22)			24	49					0	0	0.002299	0	0
TAS2R8	50836	broad.mit.edu	37	12	10959158	10959158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:10959158G>A	uc010shh.1	-	1	422	c.422C>T	c.(421-423)TCC>TTC	p.S141F		NM_023918	NP_076407	Q9NYW2	TA2R8_HUMAN	taste receptor, type 2, member 8	141	Helical; Name=4; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			ovary(2)	2						GACCAACAAGGAAATGGCAAA	0.408													5	16					0	0	0.001168	0	0
PRB4	5545	broad.mit.edu	37	12	11462321	11462321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:11462321G>A	uc001qzf.1	-	2	117	c.83C>T	c.(82-84)TCT>TTT	p.S28F	PRB4_uc001qzt.2_Missense_Mutation_p.S28F	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	28				S -> P (in Ref. 5; AA sequence).		extracellular region				ovary(1)	1						TAGGAAGAGAGATTCTTCCTG	0.378										HNSCC(22;0.051)			14	38					0	0	0.002450	0	0
PRB1	5542	broad.mit.edu	37	12	11506747	11506747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:11506747G>A	uc001qzw.1	-	3	327	c.290C>T	c.(289-291)CCA>CTA	p.P97L	PRB1_uc001qzu.1_Missense_Mutation_p.P97L|PRB1_uc001qzv.1_Missense_Mutation_p.P97L	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	158	6.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGTCCTTGTGGTTTTCCTGG	0.607													83	353					0	0	0.003610	0	0
PDE3A	5139	broad.mit.edu	37	12	20832983	20832983	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:20832983G>A	uc001reh.1	+	16	3226	c.3204G>A	c.(3202-3204)AGG>AGA	p.R1068R		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1068	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CTTTCAAAAGGAGAAAAATCT	0.358													7	21					0	0	0.001984	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21196347	21196347	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:21196347C>T	uc010sin.1	+	6	666	c.666C>T	c.(664-666)TCC>TCT	p.S222S	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Silent_p.S269S	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	222						membrane	transporter activity				0						GAATAGTATCCATTATTTCTT	0.368													16	43					0	0	0.004990	0	0
OVCH1	341350	broad.mit.edu	37	12	29617510	29617510	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:29617510G>A	uc001rix.1	-	18	2055	c.2055C>T	c.(2053-2055)CTC>CTT	p.L685L		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	685	Peptidase S1 2.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					CGCTGTGTGGGAGACATACTG	0.458													10	32					0	0	0.006214	0	0
YARS2	51067	broad.mit.edu	37	12	32908665	32908665	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:32908665G>A	uc001rli.2	-	1	210	c.144C>T	c.(142-144)TTC>TTT	p.F48F		NM_001040436	NP_001035526	Q9Y2Z4	SYYM_HUMAN	tyrosyl-tRNA synthetase 2, mitochondrial	48					tyrosyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|RNA binding|tyrosine-tRNA ligase activity				0	Lung NSC(5;2.43e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)				L-Tyrosine(DB00135)	AGAAGTCCTTGAACAGACCTC	0.577											OREG0021729	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	84					0	0	0.006230	0	0
DBX2	440097	broad.mit.edu	37	12	45429837	45429837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:45429837G>A	uc001rok.1	-	2	636	c.464C>T	c.(463-465)TCC>TTC	p.S155F		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	155						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		gcgccgacaggacccaccgca	0.085													7	10					0	0	0.001984	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457597	45457597	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:45457597C>T	uc001rol.2	-	1		c.1598G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CCTGTAACATCGTCACTGGTT	0.498													3	13					0	0	0.009096	0	0
SLC38A4	55089	broad.mit.edu	37	12	47186821	47186821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:47186821C>T	uc001rpi.2	-	3	433	c.34G>A	c.(34-36)GAA>AAA	p.E12K	SLC38A4_uc001rpj.2_Missense_Mutation_p.E12K|SLC38A4_uc009zkl.2_Missense_Mutation_p.E12K	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	12	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TCATCTGGTTCGATGTTGACA	0.443													18	57					0	0	0.008871	0	0
MLL2	8085	broad.mit.edu	37	12	49425089	49425089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:49425089G>A	uc001rta.3	-	39	13399	c.13399C>T	c.(13399-13401)CTC>TTC	p.L4467F		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4467	LXXLL motif 5.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TTTGCCCGGAGTAGCTTCTGC	0.627			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			18	35					0	0	0.008871	0	0
GPD1	2819	broad.mit.edu	37	12	50501442	50501442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:50501442G>A	uc001rvz.2	+	6	738	c.705G>A	c.(703-705)ATG>ATA	p.M235I	GPD1_uc001rwa.2_Missense_Mutation_p.M212I	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	235					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	TCATGGAGATGATAGCCTTCG	0.587													38	107					0	0	0.004878	0	0
TMPRSS12	283471	broad.mit.edu	37	12	51252788	51252788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:51252788G>A	uc001rwx.3	+	3	651	c.604G>A	c.(604-606)GGA>AGA	p.G202R	TMPRSS12_uc001rwy.2_Missense_Mutation_p.G202R	NM_182559	NP_872365	Q86WS5	TMPSC_HUMAN	transmembrane protease, serine 12 precursor	202	Peptidase S1.|Extracellular (Potential).				proteolysis	integral to membrane	serine-type endopeptidase activity				0						AATCCTGGACGGAAACACAAA	0.348													4	14					0	0	0.000602	0	0
BIN2	51411	broad.mit.edu	37	12	51695836	51695836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:51695836C>T	uc001ryg.2	-	5	428	c.376G>A	c.(376-378)GAA>AAA	p.E126K	BIN2_uc009zlz.2_Intron|BIN2_uc001ryh.2_Missense_Mutation_p.E2K|BIN2_uc010sng.1_Missense_Mutation_p.E100K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	126	BAR.					cytoplasm	protein binding			ovary(1)	1						ACATAGATTTCCATGGTCCTT	0.458													8	19					0	0	0.008291	0	0
SCN8A	6334	broad.mit.edu	37	12	52056748	52056748	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:52056748G>A	uc001ryw.2	+	2	325	c.147G>A	c.(145-147)GAG>GAA	p.E49E		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	49					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	AGGACGATGAGGACAGCAAGC	0.567													15	38					0	0	0.003163	0	0
GRASP	160622	broad.mit.edu	37	12	52408956	52408956	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:52408956C>T	uc001rzo.1	+	8	1217	c.1161C>T	c.(1159-1161)TCC>TCT	p.S387S	GRASP_uc001rzp.1_Silent_p.S244S	NM_181711	NP_859062	Q7Z6J2	GRASP_HUMAN	GRP1 (general receptor for phosphoinositides	387						cell junction|perinuclear region of cytoplasm|postsynaptic membrane				central_nervous_system(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.0967)		TCAACCGCTCCCTGGAGGAGG	0.642													4	27					0	0	0.001168	0	0
KRT83	3889	broad.mit.edu	37	12	52715014	52715014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:52715014G>A	uc001saf.2	-	1	169	c.106C>T	c.(106-108)CCC>TCC	p.P36S		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	36	Head.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CCGCGGTAGGGGGCGGCGGTG	0.701													17	47					0	0	0.010504	0	0
KRT82	3888	broad.mit.edu	37	12	52799831	52799831	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:52799831G>A	uc001sai.1	-	1	346	c.231C>T	c.(229-231)GGC>GGT	p.G77G		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	77	Head.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		GGTACCCGAAGCCAGGCAGGG	0.657													15	26					0	0	0.002450	0	0
KRT73	319101	broad.mit.edu	37	12	53005009	53005009	+	Silent	SNP	C	T	T	rs115352534	by1000genomes	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:53005009C>T	uc001sas.2	-	6	1124	c.1089G>A	c.(1087-1089)GAG>GAA	p.E363E		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	363	Rod.|Coil 2.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CACTCTCAATCTCCGAGCGCA	0.567													22	41					0	0	0.002780	0	0
KRT1	3848	broad.mit.edu	37	12	53070892	53070892	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:53070892T>A	uc001sau.1	-	6	1264	c.1205A>T	c.(1204-1206)AAT>ATT	p.N402I	KRT1_uc001sav.1_Missense_Mutation_p.N402I	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	402	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						GATCACACGATTCAGCTCAGA	0.433													11	28					0	0	0.008291	0	0
KRT76	51350	broad.mit.edu	37	12	53169379	53169379	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:53169379A>T	uc001sax.2	-	2	662	c.608T>A	c.(607-609)TTC>TAC	p.F203Y		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	203	Coil 1A.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						CTGTTCCAGGAACCGCACCTG	0.572													26	51					0	0	0.003954	0	0
ESPL1	9700	broad.mit.edu	37	12	53663155	53663155	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:53663155G>A	uc001sck.2	+	3	520	c.429G>A	c.(427-429)GTG>GTA	p.V143V	ESPL1_uc001scj.2_5'UTR	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	143					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						ATGAGGCCGTGGCTCGGGGCA	0.622													20	40					0	0	0.010504	0	0
MAP3K12	7786	broad.mit.edu	37	12	53879933	53879933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:53879933G>A	uc001sdm.1	-	5	727	c.629C>T	c.(628-630)CCC>CTC	p.P210L	MAP3K12_uc001sdn.1_Missense_Mutation_p.P243L	NM_006301	NP_006292	Q12852	M3K12_HUMAN	mitogen-activated protein kinase kinase kinase	210	Protein kinase.				histone phosphorylation|JNK cascade|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation	cytosol|membrane fraction|plasma membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			lung(2)|ovary(1)|breast(1)|skin(1)	5						CAGTAAGGAGGGGGTGACAGG	0.592													21	41					0	0	0.003330	0	0
OR6C3	254786	broad.mit.edu	37	12	55725759	55725759	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:55725759A>G	uc010spj.1	+	1	275	c.275A>G	c.(274-276)AAC>AGC	p.N92S		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATTTCCTATAACAACTGTGCA	0.413													11	40					0	0	0.008291	0	0
OR6C3	254786	broad.mit.edu	37	12	55725784	55725784	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:55725784C>T	uc010spj.1	+	1	300	c.300C>T	c.(298-300)TTC>TTT	p.F100F		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	100	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AACTCTTTTTCTTTATCTTCA	0.413													21	43					0	0	0.008871	0	0
OR6C3	254786	broad.mit.edu	37	12	55726161	55726161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:55726161C>T	uc010spj.1	+	1	677	c.677C>T	c.(676-678)CCG>CTG	p.P226L		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTGAGAATCCCGTCTGCCAGT	0.353													13	28					0	0	0.001855	0	0
OR6C75	390323	broad.mit.edu	37	12	55759618	55759618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:55759618C>T	uc010spk.1	+	1	724	c.724C>T	c.(724-726)CAT>TAT	p.H242Y		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						TTGCTCCTCCCATATGATAGT	0.398													16	29					0	0	0.003163	0	0
OR6C75	390323	broad.mit.edu	37	12	55759740	55759740	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:55759740C>T	uc010spk.1	+	1	846	c.846C>T	c.(844-846)CTC>CTT	p.L282L		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						TGGCTCCTCTCTTGAATCCCT	0.393													10	34					0	0	0.008291	0	0
PAN2	9924	broad.mit.edu	37	12	56717878	56717878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:56717878C>T	uc001skx.2	-	13	2393	c.2020G>A	c.(2020-2022)GTG>ATG	p.V674M	PAN2_uc001skw.2_Translation_Start_Site|PAN2_uc001skz.2_Missense_Mutation_p.V673M|PAN2_uc001sky.2_Missense_Mutation_p.V674M	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	674					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						GAGGCTCGCACGGTCTCACTG	0.537													29	59					0	0	0.006320	0	0
RDH16	8608	broad.mit.edu	37	12	57348915	57348915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:57348915G>A	uc001smi.3	-	2	519	c.347C>T	c.(346-348)TCC>TTC	p.S116F	RDH16_uc009zpa.2_Intron	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	116	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						CGTGGGCAAGGAGATGCCAGC	0.552													7	16					0	0	0.001984	0	0
GLI1	2735	broad.mit.edu	37	12	57865553	57865553	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:57865553C>T	uc001snx.2	+	12	3108	c.3030C>T	c.(3028-3030)AGC>AGT	p.S1010S	GLI1_uc009zpq.2_Silent_p.S882S	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	1010					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CAAACCCCAGCTGTGGTCATC	0.587													30	69					0	0	0.002096	0	0
PTPRB	5787	broad.mit.edu	37	12	70960357	70960357	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:70960357G>A	uc001swb.3	-	13	3138	c.3108C>T	c.(3106-3108)ATC>ATT	p.I1036I	PTPRB_uc010sto.1_Intron|PTPRB_uc010stp.1_Silent_p.I946I|PTPRB_uc001swc.3_Silent_p.I1254I|PTPRB_uc001swa.3_Silent_p.I1166I|PTPRB_uc001swd.3_Silent_p.I1253I|PTPRB_uc009zrr.1_Silent_p.I1133I	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1036	Fibronectin type-III 12.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGCGCAGAAGGATTCCATTTT	0.413													16	50					0	0	0.004990	0	0
PTPRB	5787	broad.mit.edu	37	12	71003006	71003006	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:71003006G>A	uc001swb.3	-	2	198	c.168C>T	c.(166-168)CTC>CTT	p.L56L	PTPRB_uc010sto.1_Silent_p.L56L|PTPRB_uc010stp.1_Silent_p.L56L|PTPRB_uc001swc.3_Silent_p.L274L|PTPRB_uc001swa.3_Silent_p.L274L|PTPRB_uc001swd.3_Silent_p.L273L|PTPRB_uc009zrr.1_Silent_p.L153L|PTPRB_uc001swe.2_Silent_p.L274L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	56	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGCTATAGATGAGGCTAAAGT	0.512													12	37					0	0	0.000978	0	0
PTPRB	5787	broad.mit.edu	37	12	71029530	71029530	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:71029530C>T	uc001swc.3	-	2	416	c.372G>A	c.(370-372)AGG>AGA	p.R124R	PTPRB_uc001swa.3_Silent_p.R124R|PTPRB_uc001swd.3_Silent_p.R123R|PTPRB_uc009zrr.1_Intron|PTPRB_uc001swe.2_Silent_p.R124R	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GGAGGTATTTCCTGGCCTTCT	0.463													9	30					0	0	0.008291	0	0
TRHDE	29953	broad.mit.edu	37	12	73012798	73012798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:73012798G>A	uc001sxa.2	+	13	2344	c.2314G>A	c.(2314-2316)GAA>AAA	p.E772K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	772	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GGACCGCATGGAAAACTACAA	0.333													6	28					0	0	0.003080	0	0
KCNC2	3747	broad.mit.edu	37	12	75442073	75442073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:75442073C>T	uc001sxg.1	-	4	2184	c.1640G>A	c.(1639-1641)GGA>GAA	p.G547E	KCNC2_uc009zry.2_Missense_Mutation_p.G547E|KCNC2_uc001sxe.2_Missense_Mutation_p.G547E|KCNC2_uc001sxf.2_Intron|KCNC2_uc010stw.1_Intron	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	547	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CGGCTCACTTCCTGTACTGTC	0.478													15	27					0	0	0.004007	0	0
MYF5	4617	broad.mit.edu	37	12	81111175	81111175	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:81111175G>A	uc001szg.2	+	1	468	c.333G>A	c.(331-333)ACG>ACA	p.T111T		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	111	Helix-loop-helix motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						GGTGTACCACGACCAACCCCA	0.592													14	37					0	0	0.002450	0	0
PPFIA2	8499	broad.mit.edu	37	12	81777804	81777804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:81777804C>T	uc001szo.1	-	9	1143	c.982G>A	c.(982-984)GAG>AAG	p.E328K	PPFIA2_uc010sue.1_Missense_Mutation_p.E228K|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	254										ovary(3)|lung(2)|pancreas(1)	6						TCACTTACCTCCCTAATGTCC	0.408													3	19					0	0	0.004672	0	0
C12orf50	160419	broad.mit.edu	37	12	88376914	88376914	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:88376914T>C	uc001tam.1	-	12	1353	c.1185A>G	c.(1183-1185)TCA>TCG	p.S395S		NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	395								p.S395L(1)		skin(2)|ovary(1)	3						AATATGTTTTTGAAAAAGGAA	0.269													15	50					0	0	0.006122	0	0
C12orf63	374467	broad.mit.edu	37	12	97051840	97051840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:97051840G>A	uc001tet.1	+	4	634	c.556G>A	c.(556-558)GAA>AAA	p.E186K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	186										skin(6)|ovary(1)	7						GGAAAAATGGGAAACACTAGT	0.333													9	31					0	0	0.006214	0	0
ANO4	121601	broad.mit.edu	37	12	101493365	101493365	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:101493365G>A	uc010svm.1	+	22	2588	c.2016G>A	c.(2014-2016)CAG>CAA	p.Q672Q	ANO4_uc001thw.2_Silent_p.Q637Q|ANO4_uc001thx.2_Silent_p.Q672Q|ANO4_uc001thy.2_Silent_p.Q192Q	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	672	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						GGTTAATTCAGAATTGGTGGA	0.343										HNSCC(74;0.22)			22	32					0	0	0.003954	0	0
STAB2	55576	broad.mit.edu	37	12	104048356	104048356	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:104048356C>T	uc001tjw.2	+	13	1617	c.1431C>T	c.(1429-1431)CTC>CTT	p.L477L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	477	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGCTTAAACTCCATGGAGGCA	0.294													6	24					0	0	0.001984	0	0
STAB2	55576	broad.mit.edu	37	12	104102255	104102255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:104102255C>T	uc001tjw.2	+	39	4415	c.4229C>T	c.(4228-4230)CCC>CTC	p.P1410L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1410	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AACCAAGGACCCTTGGGAGAT	0.458													32	63					0	0	0.003271	0	0
STAB2	55576	broad.mit.edu	37	12	104155081	104155081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:104155081G>A	uc001tjw.2	+	66	7438	c.7252G>A	c.(7252-7254)GAG>AAG	p.E2418K	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2418	Extracellular (Potential).|FAS1 7.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TCCCTAGACGGAGACCAGGTT	0.517													20	50					0	0	0.002780	0	0
CKAP4	10970	broad.mit.edu	37	12	106633345	106633346	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:106633345_106633346GG>AA	uc001tlk.2	-	2	1349_1350	c.1265_1266CC>TT	c.(1264-1266)TCC>TTT	p.S422F		NM_006825	NP_006816	Q07065	CKAP4_HUMAN	cytoskeleton-associated protein 4	422	Potential.					ER-Golgi intermediate compartment membrane|integral to membrane|membrane fraction					0						CCACCTGCATGGAGAGCACCCC	0.658													11	60					0	0	0.004672	0	0
MYO1H	283446	broad.mit.edu	37	12	109826641	109826641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:109826641C>T	uc010sxn.1	+	1	118	c.118C>T	c.(118-120)CTC>TTC	p.L40F		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						myosin complex	motor activity				0						CAGCGAGAACCTCATATACGT	0.493													60	146					0	0	0.003610	0	0
TRPV4	59341	broad.mit.edu	37	12	110246249	110246249	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:110246249G>A	uc001tpj.1	-	2	506	c.411C>T	c.(409-411)GCC>GCT	p.A137A	TRPV4_uc001tpg.1_Silent_p.A103A|TRPV4_uc001tph.1_Silent_p.A137A|TRPV4_uc001tpi.1_Silent_p.A137A|TRPV4_uc001tpk.1_Silent_p.A137A|TRPV4_uc001tpl.1_Silent_p.A137A	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	137	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GAGGGGCAGGGGCTTTGGGGC	0.657													6	23					0	0	0.001168	0	0
RPH3A	22895	broad.mit.edu	37	12	113327831	113327831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:113327831G>A	uc010syl.1	+	18	1928	c.1566G>A	c.(1564-1566)ATG>ATA	p.M522I	RPH3A_uc001ttz.2_Missense_Mutation_p.M522I|RPH3A_uc001tty.2_Missense_Mutation_p.M518I|RPH3A_uc009zwe.1_Missense_Mutation_p.M518I|RPH3A_uc010sym.1_Missense_Mutation_p.M473I|RPH3A_uc001tua.2_Missense_Mutation_p.M282I	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	522					intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		CTTTTAAGATGAAACGTGCTG	0.483													49	123					0	0	0.003610	0	0
SDSL	113675	broad.mit.edu	37	12	113865885	113865885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:113865885C>T	uc001tvi.2	+	3	308	c.98C>T	c.(97-99)CCT>CTT	p.P33L	SDSL_uc009zwh.2_Missense_Mutation_p.P33L	NM_138432	NP_612441	Q96GA7	SDSL_HUMAN	serine dehydratase-like	33					cellular amino acid metabolic process		L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	GCGGGCATGCCTGTCTTCCTC	0.517													6	11					0	0	0.001168	0	0
KSR2	283455	broad.mit.edu	37	12	117914313	117914313	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:117914313C>T	uc001two.2	-	17	2506	c.2451G>A	c.(2449-2451)GAG>GAA	p.E817E		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	846	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGAGCTTATCCTCCTCTGTGT	0.607													4	12					0	0	0.000602	0	0
CIT	11113	broad.mit.edu	37	12	120196473	120196473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:120196473G>A	uc001txi.1	-	20	2380	c.2327C>T	c.(2326-2328)TCC>TTC	p.S776F	CIT_uc001txh.1_Missense_Mutation_p.S310F|CIT_uc001txj.1_Missense_Mutation_p.S818F	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	776	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CTGTTCCAGGGATCTGATCTT	0.448													23	67					0	0	0.005443	0	0
PITPNM2	57605	broad.mit.edu	37	12	123498443	123498443	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:123498443G>A	uc001uej.1	-	3	364	c.225C>T	c.(223-225)TCC>TCT	p.S75S	PITPNM2_uc001uek.1_Silent_p.S75S|PITPNM2_uc009zxu.1_Silent_p.S75S	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	75					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		TGGGCAGGATGGAGCGGAACC	0.622													16	40					0	0	0.006122	0	0
PITPNM2	57605	broad.mit.edu	37	12	123498448	123498448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:123498448G>A	uc001uej.1	-	3	359	c.220C>T	c.(220-222)CGC>TGC	p.R74C	PITPNM2_uc001uek.1_Missense_Mutation_p.R74C|PITPNM2_uc009zxu.1_Missense_Mutation_p.R74C	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	74					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		AGGATGGAGCGGAACCAGCTG	0.622													16	39					0	0	0.006122	0	0
DNAH10	196385	broad.mit.edu	37	12	124303737	124303737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:124303737G>A	uc001uft.3	+	22	3611	c.3586G>A	c.(3586-3588)GAG>AAG	p.E1196K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1196	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCAGATAGAGGAGTTTGCAAA	0.393													5	12					0	0	0.000602	0	0
DNAH10	196385	broad.mit.edu	37	12	124341748	124341748	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr12:124341748T>C	uc001uft.3	+	36	6255	c.6230T>C	c.(6229-6231)GTA>GCA	p.V2077A		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2077	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AACGATGCGGTAGAGCAGGTC	0.527													16	21					0	0	0.008871	0	0
SACS	26278	broad.mit.edu	37	13	23904967	23904967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:23904967C>T	uc001uon.2	-	10	13637	c.13048G>A	c.(13048-13050)GAA>AAA	p.E4350K	SACS_uc001uoo.2_Missense_Mutation_p.E4203K|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	4350	J.				cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TTAAAAACTTCATTGGCAATG	0.383													23	36					0	0	0.002299	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24465742	24465742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:24465742C>T	uc010tcw.1	-	3	688	c.688G>A	c.(688-690)GAA>AAA	p.E230K	MIPEP_uc001uox.3_5'Flank|PCOTH_uc001uoy.2_Intron|PCOTH_uc009zzx.2_Intron|C1QTNF9B_uc010tcv.1_Intron|C1QTNF9B_uc001uoz.1_Intron|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.E230K	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	230	C1q.					collagen					0						TGGTTGAATTCATTATACAGG	0.428													4	15					0	0	0.001984	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24895592	24895592	+	Missense_Mutation	SNP	G	A	A	rs146807462		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:24895592G>A	uc001upj.2	+	4	749	c.688G>A	c.(688-690)GAA>AAA	p.E230K	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	230	C1q.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		CCTGTATAACGAATTCAACCA	0.428													13	98					0	0	0.002450	0	0
RNF17	56163	broad.mit.edu	37	13	25416274	25416274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:25416274G>A	uc001upr.2	+	19	2619	c.2578G>A	c.(2578-2580)GAG>AAG	p.E860K	RNF17_uc010tdd.1_Missense_Mutation_p.E719K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E860K|RNF17_uc001ups.2_Missense_Mutation_p.E799K|RNF17_uc010aac.2_Missense_Mutation_p.E58K|RNF17_uc010aad.2_5'Flank	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	860					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GCTAGTTAAAGAGGGCCTAGC	0.313													20	28					0	0	0.002299	0	0
FLT1	2321	broad.mit.edu	37	13	28877373	28877373	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:28877373C>T	uc001usb.3	-	30	4233	c.3948G>A	c.(3946-3948)AGG>AGA	p.R1316R	FLT1_uc010aap.2_Silent_p.R321R|FLT1_uc010aaq.2_Silent_p.R441R|FLT1_uc001usa.3_Silent_p.R534R	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1316	Cytoplasmic (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	ACGCGATTTTCCTTTCCAGCT	0.572													21	35					0	0	0.002299	0	0
MTUS2	23281	broad.mit.edu	37	13	29599514	29599514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:29599514G>A	uc001usl.3	+	1	767	c.709G>A	c.(709-711)GCA>ACA	p.A237T		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	227						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CGCTGTCCCGGCAGCTTTCCC	0.587													16	28					0	0	0.004007	0	0
KL	9365	broad.mit.edu	37	13	33629241	33629241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:33629241G>A	uc001uus.2	+	3	1396	c.1388G>A	c.(1387-1389)GGT>GAT	p.G463D	KL_uc001uur.1_Missense_Mutation_p.G156D	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	463	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CTCATGGATGGTTTCGAGTGG	0.517													26	70					0	0	0.003954	0	0
STARD13	90627	broad.mit.edu	37	13	33704280	33704280	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:33704280C>T	uc001uuw.2	-	5	660	c.534G>A	c.(532-534)AGG>AGA	p.R178R	STARD13_uc001uuu.2_Silent_p.R170R|STARD13_uc001uuv.2_Silent_p.R60R|STARD13_uc001uux.2_Silent_p.R143R|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Silent_p.R163R	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	178					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		TGGTCGTGTTCCTCATCCCCG	0.607													9	19					0	0	0.006214	0	0
NBEA	26960	broad.mit.edu	37	13	35733774	35733774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:35733774G>A	uc001uvb.2	+	23	3672	c.3466G>A	c.(3466-3468)GAA>AAA	p.E1156K	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1156						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CAAACAGGAGGAAAAACTACT	0.358													3	10					0	0	0.004672	0	0
C13orf23	80209	broad.mit.edu	37	13	39587627	39587627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:39587627C>T	uc001uwy.2	-	11	2635	c.1762G>A	c.(1762-1764)GGT>AGT	p.G588S	C13orf23_uc001uwz.2_Missense_Mutation_p.G566S	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	588	Ser-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		TCTGAGGTACCTGGGTGGGGG	0.532													30	73					0	0	0.002836	0	0
NHLRC3	387921	broad.mit.edu	37	13	39613751	39613751	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:39613751C>T	uc001uxc.2	+	3	610	c.288C>T	c.(286-288)TTC>TTT	p.F96F	C13orf23_uc001uwy.2_5'Flank|C13orf23_uc001uwz.2_5'Flank|NHLRC3_uc001uxa.1_Silent_p.F96F|NHLRC3_uc001uxb.1_Silent_p.F96F|NHLRC3_uc001uxd.2_Silent_p.F96F|NHLRC3_uc001uxe.2_5'UTR	NM_001012754	NP_001012772	Q5JS37	NHLC3_HUMAN	NHL repeat containing 3 isoform a	96						extracellular region				skin(1)	1		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;2.37e-08)|Epithelial(112;3.14e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00101)|BRCA - Breast invasive adenocarcinoma(63;0.00335)|GBM - Glioblastoma multiforme(144;0.0128)		ATGGATATTTCCTACGAGCCT	0.398													15	29					0	0	0.003163	0	0
KIAA0564	23078	broad.mit.edu	37	13	42189183	42189183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:42189183G>A	uc001uyj.2	-	38	4719	c.4649C>T	c.(4648-4650)TCC>TTC	p.S1550F		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1550						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GTGTTTGGGGGAGCTTACATC	0.493													7	31					0	0	0.001984	0	0
KIAA0564	23078	broad.mit.edu	37	13	42393512	42393512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:42393512G>A	uc001uyj.2	-	15	1781	c.1711C>T	c.(1711-1713)CCT>TCT	p.P571S	KIAA0564_uc001uyk.2_Missense_Mutation_p.P571S	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	571						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GGATGGATAGGAAAAATGGAT	0.388													8	21					0	0	0.003080	0	0
HTR2A	3356	broad.mit.edu	37	13	47409312	47409312	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:47409312C>G	uc001vbq.2	-	3	1210	c.1076G>C	c.(1075-1077)GGG>GCG	p.G359A	HTR2A_uc001vbr.2_Missense_Mutation_p.G259A|HTR2A_uc010acr.2_Missense_Mutation_p.G359A	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	359	Extracellular (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity	p.G359G(1)		ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GAGCAGGGCCCCAATGACATC	0.473													17	35					0	0	0.006122	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49281442	49281442	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:49281442G>A	uc010acx.1	+	6	1172	c.489G>A	c.(487-489)TGG>TGA	p.W163*	CYSLTR2_uc010acy.1_Nonsense_Mutation_p.W163*|CYSLTR2_uc010acz.1_Nonsense_Mutation_p.W163*|CYSLTR2_uc010ada.1_Nonsense_Mutation_p.W163*|CYSLTR2_uc010adb.1_Nonsense_Mutation_p.W163*|CYSLTR2_uc010adc.1_Nonsense_Mutation_p.W163*|CYSLTR2_uc010add.1_Nonsense_Mutation_p.W163*|CYSLTR2_uc010acw.1_Nonsense_Mutation_p.W163*|CYSLTR2_uc001vck.2_Nonsense_Mutation_p.W163*	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	163	Helical; Name=4; (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	GGATCATATGGATCCTTATCA	0.498													20	64					0	0	0.002299	0	0
KPNA3	3839	broad.mit.edu	37	13	50306751	50306751	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:50306751G>A	uc001vdj.2	-	5	692	c.277C>T	c.(277-279)CAG>TAG	p.Q93*		NM_002267	NP_002258	O00505	IMA3_HUMAN	karyopherin alpha 3	93	ARM 1; truncated.				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|protein complex assembly	cytoplasm|nuclear pore	nuclear localization sequence binding|protein transporter activity				0		Lung NSC(96;2.46e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.42e-09)		CTTGCTGCCTGGACAGCACTC	0.328													28	56					0	0	0.002836	0	0
DHRS12	79758	broad.mit.edu	37	13	52373720	52373720	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:52373720C>A	uc001vfq.2	-	2	188	c.140G>T	c.(139-141)GGA>GTA	p.G47V	DHRS12_uc001vfr.1_Nonsense_Mutation_p.E26*|DHRS12_uc001vfs.1_Nonsense_Mutation_p.E26*			A0PJE2	DHR12_HUMAN	RecName: Full=Dehydrogenase/reductase SDR family member 12;          EC=1.1.-.-;	47	NAD or NADP (By similarity).						binding|oxidoreductase activity				0		Breast(56;0.00173)|Prostate(109;0.00899)|Lung NSC(96;0.0199)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.81e-08)		GCTGTTTCCTCCAGTGACCAA	0.527													36	85					1.03484e-13	1.05928e-13	0.005524	1	0
SLAIN1	122060	broad.mit.edu	37	13	78293711	78293711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:78293711C>T	uc010thy.1	+	2	222	c.179C>T	c.(178-180)TCC>TTC	p.S60F	SLAIN1_uc001vkk.1_5'UTR	NM_144595	NP_653196	Q8ND83	SLAI1_HUMAN	SLAIN motif family, member 1 B	202										ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0853)		TCAGAGAAATCCCTGACTCCT	0.418													8	32					0	0	0.003080	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454988	84454988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:84454988C>T	uc001vlk.2	-	1	1541	c.655G>A	c.(655-657)GAT>AAT	p.D219N		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	219	Extracellular (Potential).|LRRCT 1.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GAGAGCAGATCACAGGTGCAG	0.547													9	27					0	0	0.004482	0	0
GPC6	10082	broad.mit.edu	37	13	95034789	95034789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:95034789G>A	uc001vlt.2	+	7	1906	c.1274G>A	c.(1273-1275)GGG>GAG	p.G425E		NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	425						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				TGCTGGAACGGGCACAGCAAA	0.552													13	35					0	0	0.002450	0	0
DCT	1638	broad.mit.edu	37	13	95092305	95092305	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:95092305C>T	uc001vlv.3	-	8	1834	c.1407G>A	c.(1405-1407)TGG>TGA	p.W469*	DCT_uc010afh.2_Nonsense_Mutation_p.W502*	NM_001922	NP_001913	P40126	TYRP2_HUMAN	dopachrome tautomerase isoform 1	469	Lumenal, melanosome (Potential).				epidermis development|melanin biosynthetic process from tyrosine	cytosol|integral to membrane|melanosome membrane|microsome	copper ion binding|dopachrome isomerase activity|oxidoreductase activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;3.71e-42)|all_epithelial(2;3.76e-31)|all_lung(2;5.16e-14)|Lung NSC(4;1.33e-13)|Breast(118;0.0013)|Hepatocellular(115;0.00886)|Renal(2;0.00988)		COAD - Colon adenocarcinoma(199;7.07e-05)|GBM - Glioblastoma multiforme(99;0.000472)		GAGTTGTGGGCCAACCTGGAG	0.408													8	19					0	0	0.006214	0	0
DZIP1	22873	broad.mit.edu	37	13	96274644	96274644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:96274644G>A	uc001vmk.2	-	9	1915	c.1063C>T	c.(1063-1065)CCA>TCA	p.P355S	DZIP1_uc001vml.2_Missense_Mutation_p.P355S	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	355					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			TGGGGATATGGAGAACGGTCT	0.423													15	34					0	0	0.003163	0	0
COL4A1	1282	broad.mit.edu	37	13	110827028	110827028	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr13:110827028G>A	uc001vqw.3	-	38	3389	c.3267C>T	c.(3265-3267)ATC>ATT	p.I1089I	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1089	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GCATTCCTGGGATCCCAATGC	0.527													47	99					0	0	0.003610	0	0
OR11H12	440153	broad.mit.edu	37	14	19377829	19377829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:19377829G>A	uc010tkp.1	+	1	236	c.236G>A	c.(235-237)GGA>GAA	p.G79E		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATGTTCCTGGGAAATTTCTCC	0.413													24	43					0	0	0.008361	0	0
POTEG	404785	broad.mit.edu	37	14	19573112	19573112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:19573112G>A	uc001vuz.1	+	8	1262	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	404										ovary(1)	1						AATGTCTCAAGAACCAGAAAT	0.294													3	35					0	0	0.001984	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216441	20216442	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:20216441_20216442CC>TT	uc010tkt.1	+	1	855_856	c.855_856CC>TT	c.(853-858)CCCCTC>CCTTTC	p.L286F		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGTTGAACCCCCTCATCTACAC	0.416													17	39					0	0	0.004672	0	0
OR4M1	441670	broad.mit.edu	37	14	20248610	20248610	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:20248610C>T	uc010tku.1	+	1	129	c.129C>T	c.(127-129)ATC>ATT	p.I43I		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CAGGAAATATCCTTATCATTT	0.418													44	93					0	0	0.003214	0	0
OR4K2	390431	broad.mit.edu	37	14	20344656	20344656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:20344656C>T	uc001vwh.1	+	1	230	c.230C>T	c.(229-231)GCC>GTC	p.A77V		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTTCTTTCGCCACCCCAAAG	0.413													43	67					0	0	0.007835	0	0
OR4K1	79544	broad.mit.edu	37	14	20404300	20404300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:20404300C>T	uc001vwj.1	+	1	475	c.475C>T	c.(475-477)CAC>TAC	p.H159Y		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TTCTGTGAGCCACTTGGCTTT	0.478													17	44					0	0	0.004990	0	0
OR4K13	390433	broad.mit.edu	37	14	20502263	20502263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:20502263C>T	uc010tkz.1	-	1	655	c.655G>A	c.(655-657)GGA>AGA	p.G219R		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		ATTATGACTCCATAGGAGACA	0.493													18	34					0	0	0.001882	0	0
OR4N5	390437	broad.mit.edu	37	14	20612336	20612336	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:20612336C>T	uc010tla.1	+	1	442	c.442C>T	c.(442-444)CTG>TTG	p.L148L		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		ATCGTTGGTTCTGTGGCTTGG	0.493													41	98					0	0	0.003610	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21790049	21790049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:21790049G>A	uc001wag.2	+	13	1648	c.1648G>A	c.(1648-1650)GAT>AAT	p.D550N	RPGRIP1_uc001wah.2_Missense_Mutation_p.D192N|RPGRIP1_uc001wai.2_Missense_Mutation_p.D192N|RPGRIP1_uc001waj.1_Missense_Mutation_p.D26N|RPGRIP1_uc001wak.2_Missense_Mutation_p.D25N|RPGRIP1_uc010aim.2_5'UTR|RPGRIP1_uc001wal.2_5'UTR|RPGRIP1_uc001wam.2_5'Flank	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	550	Potential.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		AGCTGACAATGATAATAGAGA	0.383													6	15					0	0	0.001168	0	0
SALL2	6297	broad.mit.edu	37	14	21993173	21993173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:21993173C>T	uc001wbe.2	-	2	971	c.689G>A	c.(688-690)GGG>GAG	p.G230E	SALL2_uc010tly.1_Missense_Mutation_p.G228E|SALL2_uc010tlz.1_Intron|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Intron|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	230							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		AGAGGCAGTCCCTGTCCCAGG	0.522													12	29					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	14	22192421	22192421	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:22192421C>T	uc001wbn.2	+	2		c.324C>T								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		CCTCCAGTTCCTTCTGAAATA	0.448													15	40					0	0	0.003163	0	0
MYH6	4624	broad.mit.edu	37	14	23869930	23869930	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:23869930G>A	uc001wjv.2	-	13	1465	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	MYH6_uc010akp.1_Silent_p.F466F	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	466	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CGAAGATCTCGAAGCCAGCGA	0.438													12	32					0	0	0.001855	0	0
LRRC16B	90668	broad.mit.edu	37	14	24525540	24525540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:24525540G>A	uc001wlj.2	+	11	960	c.803G>A	c.(802-804)GGG>GAG	p.G268E		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	268										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GGGGTGTTTGGGGAGAACGGG	0.622													3	11					0	0	0.004672	0	0
MDGA2	161357	broad.mit.edu	37	14	47566138	47566138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:47566138C>T	uc001wwj.3	-	6	1103	c.907G>A	c.(907-909)GAT>AAT	p.D303N	MDGA2_uc001wwi.3_Missense_Mutation_p.D74N|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	303	Ig-like 3.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CCAGCATCATCTGAGGTGATG	0.458													17	43					0	0	0.008871	0	0
ATL1	51062	broad.mit.edu	37	14	51099023	51099023	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:51099023A>G	uc001wyf.3	+	13	1884	c.1643A>G	c.(1642-1644)GAA>GGA	p.E548G	ATL1_uc001wyd.3_Missense_Mutation_p.E543G|ATL1_uc001wye.3_Missense_Mutation_p.E543G	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	548	Cytoplasmic.|Sufficient for membrane association.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						CCAAAGTCGGAATCTACTGAA	0.338													5	18					0	0	0.001984	0	0
TMX1	81542	broad.mit.edu	37	14	51713810	51713810	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:51713810T>C	uc001wza.3	+	4	440	c.315T>C	c.(313-315)CAT>CAC	p.H105H	TMX1_uc010aoa.2_Silent_p.S21S	NM_030755	NP_110382	Q9H3N1	TMX1_HUMAN	thioredoxin domain containing 1 precursor	105	Thioredoxin.|Extracellular (Potential).				anti-apoptosis|cell proliferation|cell redox homeostasis|DNA replication|electron transport chain|ER to Golgi vesicle-mediated transport|leukocyte activation|positive regulation of growth|positive regulation of transcription, DNA-dependent|response to stress|signal transduction	endoplasmic reticulum membrane|integral to membrane|membrane fraction	arsenate reductase (thioredoxin) activity|disulfide oxidoreductase activity				0						TTCTCTTTAGTTGTAAAGATG	0.313													14	20					0	0	0.004990	0	0
OTX2	5015	broad.mit.edu	37	14	57268930	57268930	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:57268930G>A	uc001xcp.2	-	3	564	c.393C>T	c.(391-393)TTC>TTT	p.F131F	OTX2_uc010aou.2_Silent_p.F131F|OTX2_uc001xcq.2_Silent_p.F139F	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	131					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					AGGGGGGAGTGAATTGGCCAC	0.527													19	23					0	0	0.006122	0	0
SLC35F4	341880	broad.mit.edu	37	14	58060780	58060780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:58060780C>T	uc001xdb.1	-	2	274	c.274G>A	c.(274-276)GGC>AGC	p.G92S	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_5'UTR	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						CTACTGATGCCACTGTGTGAA	0.493													7	17					0	0	0.004482	0	0
DACT1	51339	broad.mit.edu	37	14	59112095	59112095	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:59112095C>A	uc001xdw.2	+	4	918	c.754C>A	c.(754-756)CCC>ACC	p.P252T	DACT1_uc010trv.1_5'UTR|DACT1_uc001xdx.2_Missense_Mutation_p.P215T|DACT1_uc010trw.1_5'UTR	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	252					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						AGATGTGAATCCCAAGTACCA	0.478													30	38					9.78485e-24	1.00295e-23	0.002836	1	0
SYT16	83851	broad.mit.edu	37	14	62551075	62551075	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:62551075C>T	uc001xfu.1	+	5	1793	c.1596C>T	c.(1594-1596)TTC>TTT	p.F532F	SYT16_uc010tse.1_Silent_p.F90F	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	532	C2 2.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GCAGCCATTTCCGAAACCTCG	0.537													16	22					0	0	0.006122	0	0
KCNH5	27133	broad.mit.edu	37	14	63316401	63316401	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:63316401C>T	uc001xfx.2	-	8	1590	c.1539G>A	c.(1537-1539)TGG>TGA	p.W513*	KCNH5_uc001xfy.2_Nonsense_Mutation_p.W513*|KCNH5_uc001xfz.1_Nonsense_Mutation_p.W455*	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	513	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTGACATGGACCATGTTGAGA	0.368													10	37					0	0	0.000978	0	0
ZBTB1	22890	broad.mit.edu	37	14	64989825	64989825	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:64989825C>T	uc001xhh.3	+	4	2034	c.1603C>T	c.(1603-1605)CGA>TGA	p.R535*	ZBTB1_uc010aqg.2_Nonsense_Mutation_p.R535*|ZBTB1_uc001xhi.2_Nonsense_Mutation_p.R535*	NM_001123329	NP_001116801	Q9Y2K1	ZBTB1_HUMAN	zinc finger and BTB domain containing 1 isoform	535	C2H2-type 3; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		all_lung(585;0.000567)|Myeloproliferative disorder(585;0.0255)|all_neural(303;0.0294)		UCEC - Uterine corpus endometrioid carcinoma (185;0.0182)|all cancers(60;3.78e-43)|OV - Ovarian serous cystadenocarcinoma(108;1.22e-20)|BRCA - Breast invasive adenocarcinoma(234;6.75e-06)|KIRC - Kidney renal clear cell carcinoma(182;0.00269)|STAD - Stomach adenocarcinoma(64;0.012)		CTGCCCTTTTCGATGTCCTAA	0.363													30	68					0	0	0.004289	0	0
FUT8	2530	broad.mit.edu	37	14	66028473	66028473	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:66028473C>T	uc001xin.2	+	3	1389	c.192C>T	c.(190-192)GCC>GCT	p.A64A	FUT8_uc001xio.2_Silent_p.A64A|FUT8_uc010tsp.1_Intron|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Silent_p.A64A|FUT8_uc001xiq.2_Intron	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	64	Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		GGCGAATGGCCGAATCTCTCC	0.403													7	15					0	0	0.003080	0	0
EXD2	55218	broad.mit.edu	37	14	69704344	69704344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:69704344G>A	uc001xkt.2	+	10	1629	c.970G>A	c.(970-972)GAC>AAC	p.D324N	EXD2_uc001xku.2_Missense_Mutation_p.D194N|EXD2_uc001xkv.2_Missense_Mutation_p.D449N|EXD2_uc001xkw.2_Missense_Mutation_p.D324N|EXD2_uc010aqt.2_Missense_Mutation_p.D449N|EXD2_uc010tte.1_Missense_Mutation_p.D449N|EXD2_uc001xky.2_Missense_Mutation_p.D324N	NM_018199	NP_060669	Q9NVH0	EXD2_HUMAN	exonuclease 3'-5' domain containing 2	324					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						CGAGATGAAGGACCACAACTC	0.532													3	25					0	0	0.004672	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633621	70633621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:70633621G>A	uc001xly.2	-	2	2273	c.1519C>T	c.(1519-1521)CCC>TCC	p.P507S	SLC8A3_uc001xlw.2_Missense_Mutation_p.P507S|SLC8A3_uc001xlx.2_Missense_Mutation_p.P507S|SLC8A3_uc001xlz.2_Missense_Mutation_p.P507S|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	507	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CGAGGCAAGGGAAGACTGTTG	0.493													17	40					0	0	0.004007	0	0
MAP3K9	4293	broad.mit.edu	37	14	71216739	71216739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:71216739C>T	uc001xmm.2	-	4	1061	c.1061G>A	c.(1060-1062)GGC>GAC	p.G354D	MAP3K9_uc010ttk.1_Missense_Mutation_p.G91D|MAP3K9_uc001xmk.2_Missense_Mutation_p.G48D|MAP3K9_uc001xml.2_Missense_Mutation_p.G354D	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	354	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		GACTGCTAAGCCATCAATGCC	0.488													9	39					0	0	0.006214	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72165736	72165736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:72165736C>T	uc001xms.2	+	11	3761	c.3413C>T	c.(3412-3414)TCC>TTC	p.S1138F	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S1138F|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S1138F|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S1138F|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S613F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1138					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACGGTCTCATCCATGGCTTTA	0.483													18	34					0	0	0.007413	0	0
PSEN1	5663	broad.mit.edu	37	14	73640349	73640349	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:73640349C>T	uc001xnr.2	+	5	698	c.414C>T	c.(412-414)ATC>ATT	p.I138I	PSEN1_uc001xnv.2_Silent_p.I134I|PSEN1_uc010ark.2_Silent_p.I134I|PSEN1_uc001xnt.1_RNA|PSEN1_uc001xnu.2_RNA|PSEN1_uc001xnq.3_Silent_p.I138I	NM_000021	NP_000012	P49768	PSN1_HUMAN	presenilin 1 isoform I-467	138	Helical; (Potential).				amyloid precursor protein catabolic process|anti-apoptosis|beta-amyloid metabolic process|cell-cell adhesion|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|smooth endoplasmic reticulum calcium ion homeostasis	apical plasma membrane|axon|cell cortex|cell surface|centrosome|ciliary rootlet|dendritic shaft|endoplasmic reticulum membrane|gamma-secretase complex|Golgi membrane|growth cone|integral to plasma membrane|kinetochore|lysosomal membrane|membrane raft|mitochondrial inner membrane|neuromuscular junction|neuronal cell body|nuclear outer membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum|smooth endoplasmic reticulum|Z disc	aspartic-type endopeptidase activity|beta-catenin binding|cadherin binding|calcium channel activity|PDZ domain binding			breast(1)|kidney(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.075)		ATGCTGCCATCATGATCAGTG	0.443													21	44					0	0	0.010504	0	0
KIAA0317	9870	broad.mit.edu	37	14	75139651	75139651	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:75139651G>A	uc001xqb.2	-	11	1810	c.1305C>T	c.(1303-1305)GGC>GGT	p.G435G	KIAA0317_uc010tut.1_Silent_p.G274G|KIAA0317_uc001xqc.2_Silent_p.G435G	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	435					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		AGGTCTCAGAGCCTCCTGGGG	0.512													18	24					0	0	0.008871	0	0
MLH3	27030	broad.mit.edu	37	14	75515207	75515207	+	Silent	SNP	G	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:75515207G>C	uc001xrd.1	-	2	1368	c.1152C>G	c.(1150-1152)TCC>TCG	p.S384S	MLH3_uc001xre.1_Silent_p.S384S|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	384					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		TCCTCTCATCGGAAGTCACAC	0.328								MMR					6	20					0	0	0.001168	0	0
NRXN3	9369	broad.mit.edu	37	14	79454459	79454459	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:79454459T>C	uc001xun.2	+	12	2609	c.2118T>C	c.(2116-2118)TCT>TCC	p.S706S	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.S831S	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1079	EGF-like 3.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CTATGACCTCTTATTCTGGAA	0.443													18	29					0	0	0.002780	0	0
KCNK10	54207	broad.mit.edu	37	14	88693803	88693803	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:88693803G>A	uc001xwo.2	-	4	1039	c.582C>T	c.(580-582)CTC>CTT	p.L194L	KCNK10_uc001xwm.2_Silent_p.L199L|KCNK10_uc001xwn.2_Silent_p.L199L	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	194	Helical; (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						AGAAACCAAAGAGTGGAATTC	0.413													23	55					0	0	0.002780	0	0
KCNK10	54207	broad.mit.edu	37	14	88693840	88693840	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:88693840A>G	uc001xwo.2	-	4	1002	c.545T>C	c.(544-546)ATC>ACC	p.I182T	KCNK10_uc001xwm.2_Missense_Mutation_p.I187T|KCNK10_uc001xwn.2_Missense_Mutation_p.I187T	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	182	Helical; (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						AATACAAAAGATTTTGCCTCC	0.408													20	48					0	0	0.002780	0	0
CCDC88C	440193	broad.mit.edu	37	14	91805701	91805701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:91805701G>A	uc010aty.2	-	8	829	c.730C>T	c.(730-732)CTC>TTC	p.L244F	CCDC88C_uc010twk.1_Missense_Mutation_p.L208F	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	244					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TCGCTAGAGAGGCTGCTGGTG	0.662													5	19					0	0	0.001984	0	0
CATSPERB	79820	broad.mit.edu	37	14	92136196	92136196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:92136196G>A	uc001xzs.1	-	14	1389	c.1249C>T	c.(1249-1251)CAT>TAT	p.H417Y	CATSPERB_uc010aub.1_5'UTR	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	417					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CTTCGGGGATGAAATACCATT	0.408													7	25					0	0	0.001984	0	0
CATSPERB	79820	broad.mit.edu	37	14	92189534	92189534	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:92189534C>T	uc001xzs.1	-	4	309	c.169_splice	c.e4-1	p.K57_splice		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta						cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				ACTGGATTTTCTTTAGGAAAG	0.353													6	19					0	0	0.001168	0	0
LGMN	5641	broad.mit.edu	37	14	93178215	93178216	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:93178215_93178216CC>TT	uc001yav.2	-	10	1021_1022	c.695_696GG>AA	c.(694-696)TGG>TAA	p.W232*	LGMN_uc001yat.2_Nonsense_Mutation_p.W232*|LGMN_uc001yau.2_Nonsense_Mutation_p.W232*|LGMN_uc001yaw.2_Nonsense_Mutation_p.W232*|LGMN_uc010aul.2_Nonsense_Mutation_p.W113*|LGMN_uc001yax.2_Nonsense_Mutation_p.W232*|LGMN_uc001yay.2_Nonsense_Mutation_p.W232*	NM_001008530	NP_001008530	Q99538	LGMN_HUMAN	legumain preproprotein	232					hormone biosynthetic process|negative regulation of neuron apoptosis|vitamin D metabolic process	lysosome	cysteine-type endopeptidase activity|protein serine/threonine kinase activity			skin(1)	1		all_cancers(154;0.0706)		COAD - Colon adenocarcinoma(157;0.224)		TGACGCTGTACCAGTCCCCCAG	0.525													11	22					0	0	0.004672	0	0
BTBD7	55727	broad.mit.edu	37	14	93720013	93720013	+	Missense_Mutation	SNP	G	A	A	rs143914698		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:93720013G>A	uc001ybo.2	-	7	2058	c.1732C>T	c.(1732-1734)CCC>TCC	p.P578S	BTBD7_uc010aur.2_Missense_Mutation_p.P103S|BTBD7_uc010two.1_Missense_Mutation_p.P398S|BTBD7_uc001ybp.2_Missense_Mutation_p.P227S	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	578										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		TCCACATAGGGAGAGAAGAGT	0.338													9	44					0	0	0.006214	0	0
PRIMA1	145270	broad.mit.edu	37	14	94203587	94203587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:94203587C>T	uc001ybw.1	-	4	401	c.359G>A	c.(358-360)AGG>AAG	p.R120K	PRIMA1_uc001ybx.1_RNA	NM_178013	NP_821092	Q86XR5	PRIMA_HUMAN	proline rich membrane anchor 1 precursor	120	Cytoplasmic (Potential).				neurotransmitter catabolic process	cell junction|integral to membrane|synapse				large_intestine(1)|skin(1)	2		all_cancers(154;0.127)		Epithelial(152;0.138)|COAD - Colon adenocarcinoma(157;0.229)		GAGCACTCACCTTTTTATGGC	0.488													4	19					0	0	0.009096	0	0
ASB2	51676	broad.mit.edu	37	14	94420818	94420818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:94420818G>A	uc001ycc.1	-	2	668	c.179C>T	c.(178-180)CCC>CTC	p.P60L	ASB2_uc001ycd.2_Missense_Mutation_p.P108L|ASB2_uc001yce.1_Missense_Mutation_p.P6L	NM_016150	NP_057234	Q96Q27	ASB2_HUMAN	ankyrin repeat and SOCS box-containing protein	60	ANK 1.				intracellular signal transduction					ovary(1)|pancreas(1)	2		all_cancers(154;0.13)		COAD - Colon adenocarcinoma(157;0.217)|Epithelial(152;0.232)		CTTTATCAAGGGGTCCGCAGG	0.597													19	56					0	0	0.001882	0	0
PPP4R4	57718	broad.mit.edu	37	14	94725701	94725701	+	Missense_Mutation	SNP	G	A	A	rs2180398		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:94725701G>A	uc001ycs.1	+	19	2276	c.2122G>A	c.(2122-2124)GAA>AAA	p.E708K		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	708	Potential.					cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						ACTTCTTTTGGAAATGGTATG	0.269													6	8					0	0	0.001984	0	0
SERPINA10	51156	broad.mit.edu	37	14	94754734	94754734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:94754734C>T	uc001yct.2	-	3	1347	c.881G>A	c.(880-882)GGA>GAA	p.G294E	SERPINA10_uc001ycu.3_Missense_Mutation_p.G294E	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	294					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GGTGGCATTTCCTTGGTAGGG	0.502													14	31					0	0	0.004007	0	0
TCL6	27004	broad.mit.edu	37	14	96129863	96129863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:96129863G>A	uc001yeq.2	+	4	1551	c.82G>A	c.(82-84)GCC>ACC	p.A28T	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_5'UTR|TCL6_uc001yet.1_5'UTR|TCL6_uc001yeu.2_5'UTR|TCL6_uc001yev.2_5'UTR|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		tctttctgcagcccatgccac	0.204			T	TRA@	T-ALL								11	17					0	0	0.008291	0	0
BDKRB2	624	broad.mit.edu	37	14	96703495	96703495	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:96703495C>T	uc010avm.1	+	2	247	c.51C>T	c.(49-51)TCC>TCT	p.S17S	BDKRB2_uc010avl.1_Missense_Mutation_p.P77L|BDKRB2_uc010twu.1_5'UTR|BDKRB2_uc001yfg.2_Silent_p.S17S	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	17	Extracellular (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		GTGAGGACTCCGTGCCCACCA	0.532													30	48					0	0	0.002445	0	0
BCL11B	64919	broad.mit.edu	37	14	99640494	99640494	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:99640494C>T	uc001yga.2	-	4	2946	c.2679G>A	c.(2677-2679)AGG>AGA	p.R893R	BCL11B_uc001ygb.2_Silent_p.R822R	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	893						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		gcgcTTAGCTCCTCTCGGCCT	0.498			T	TLX3	T-ALL								7	19					0	0	0.003080	0	0
WARS	7453	broad.mit.edu	37	14	100809692	100809692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:100809692G>A	uc001yhf.1	-	7	943	c.859C>T	c.(859-861)CCC>TCC	p.P287S	WARS_uc001yhe.1_Missense_Mutation_p.P93S|WARS_uc001yhg.1_Missense_Mutation_p.P287S|WARS_uc001yhh.1_Missense_Mutation_p.P287S|WARS_uc001yhi.1_Missense_Mutation_p.P246S|WARS_uc001yhj.1_Missense_Mutation_p.P246S|WARS_uc001yhk.1_Missense_Mutation_p.P246S|WARS_uc001yhl.1_Missense_Mutation_p.P287S	NM_173701	NP_776049	P23381	SYWC_HUMAN	tryptophanyl-tRNA synthetase isoform a	287					angiogenesis|negative regulation of cell proliferation|regulation of angiogenesis|tryptophanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|protein binding|tryptophan-tRNA ligase activity			breast(1)	1		all_cancers(154;0.00223)|all_lung(585;2.48e-06)|all_epithelial(191;0.000564)|Melanoma(154;0.152)			L-Tryptophan(DB00150)	CTGAAGGAGGGAGCAGCCTGG	0.458													3	11					0	0	0.009096	0	0
MIR382	494331	broad.mit.edu	37	14	101520714	101520714	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:101520714C>T	hsa-mir-382|MI0000790	+			c.72C>T			uc010awe.2_RNA|uc010txo.1_5'Flank|MIR134_hsa-mir-134|MI0000474_5'Flank|MIR668_hsa-mir-668|MI0003761_5'Flank|MIR485_hsa-mir-485|MI0002469_5'Flank|hsa-mir-323b|MI0014206_5'Flank																	0						ACACTTTTTTCAGTACCAAAT	0.433													3	9					0	0	0.004672	0	0
AMN	81693	broad.mit.edu	37	14	103395162	103395162	+	Silent	SNP	G	A	A	rs141455061	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:103395162G>A	uc001ymg.3	+	5	396	c.363G>A	c.(361-363)GGG>GGA	p.G121G	AMN_uc001ymh.3_Silent_p.G67G	NM_030943	NP_112205	Q9BXJ7	AMNLS_HUMAN	amnionless protein precursor	121	Extracellular (Potential).				lipid metabolic process|lipoprotein metabolic process|multicellular organismal development	integral to membrane|plasma membrane					0				Colorectal(3;0.00739)|READ - Rectum adenocarcinoma(2;0.0336)|Epithelial(152;0.0363)|all cancers(159;0.147)	Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGCGCTCTGGGGACGAGGCAC	0.677													8	22					0	0	0.004482	0	0
TDRD9	122402	broad.mit.edu	37	14	104472727	104472727	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:104472727T>C	uc001yom.3	+	16	1745	c.1715T>C	c.(1714-1716)GTT>GCT	p.V572A	TDRD9_uc001yon.3_Missense_Mutation_p.V310A	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	572					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				TTTATAAAGGTTGGAGCACTT	0.393													15	38					0	0	0.003163	0	0
SIVA1	10572	broad.mit.edu	37	14	105221989	105221989	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:105221989C>T	uc001yph.2	+	2	210	c.141C>T	c.(139-141)TTC>TTT	p.F47F	INF2_uc010tyi.1_Intron|SIVA1_uc010tyj.1_Silent_p.F47F|SIVA1_uc001ypg.1_Silent_p.F47F|SIVA1_uc001ypi.2_Intron	NM_006427	NP_006418	O15304	SIVA_HUMAN	CD27-binding (Siva) protein isoform 1	47	Interaction with BCL2L1 isoform Bcl-x(L) and inhibition of BCL2L1 anti-apoptotic activity.				activation of caspase activity by cytochrome c|activation-induced cell death of T cells|apoptosis|induction of apoptosis|interspecies interaction between organisms|negative regulation of anti-apoptosis|negative regulation of NF-kappaB transcription factor activity	cytoplasm|mitochondrion|nucleoplasm|nucleus	caspase activator activity|CD27 receptor binding|metal ion binding|viral receptor activity|zinc ion binding				0		all_cancers(154;0.14)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.173)		GACTCCTGTTCCTCGGGGCCC	0.597													20	58					0	0	0.003954	0	0
AHNAK2	113146	broad.mit.edu	37	14	105419601	105419601	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:105419601G>A	uc010axc.1	-	7	2307	c.2187C>T	c.(2185-2187)TCC>TCT	p.S729S	AHNAK2_uc001ypx.2_Silent_p.S629S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	729						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCAGGTCAGCGGAAGGGGTCT	0.652													37	75					0	0	0.004878	0	0
ADAM6	8755	broad.mit.edu	37	14	106208017	106208017	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:106208017C>T	uc010tyt.1	-	3628		c.59100G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Silent_p.V128V|uc001ysf.2_Silent_p.V128V					Parts of antibodies, mostly variable regions.												0						TCTCCCACTCCACGGCGATGT	0.612													49	121					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106610536	106610536	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:106610536C>T	uc010tyt.1	-	1167		c.26295G>A								Parts of antibodies, mostly variable regions.												0						GAAAGTGAATCCAGAGGCTGC	0.577													21	60					0	0	0.008871	0	0
ADAM6	8755	broad.mit.edu	37	14	106725293	106725293	+	RNA	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:106725293A>G	uc010tyt.1	-	588		c.18254T>C								Parts of antibodies, mostly variable regions.												0						GAGATGGTGAACCGGCCCTTC	0.552													37	103					0	0	0.004289	0	0
ADAM6	8755	broad.mit.edu	37	14	106790973	106790973	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:106790973C>T	uc010tyt.1	-	386		c.14645G>A								Parts of antibodies, mostly variable regions.												0						AGGTTTGTGTCTGGGCGCACA	0.582													37	67					0	0	0.004289	0	0
ADAM6	8755	broad.mit.edu	37	14	106848758	106848758	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:106848758C>T	uc010tyt.1	-	294		c.12021G>A								Parts of antibodies, mostly variable regions.												0						GGCATCATCTCTGGAGAGGGT	0.483													5	11					0	0	0.000602	0	0
ADAM6	8755	broad.mit.edu	37	14	106877922	106877922	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:106877922G>A	uc010tyt.1	-	277		c.11177C>T			uc010tyu.1_Silent_p.V10V					Parts of antibodies, mostly variable regions.												0						GCTGGGACAGGACCCCTGTGA	0.592													14	25					0	0	0.004007	0	0
ADAM6	8755	broad.mit.edu	37	14	106899331	106899331	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:106899331C>T	uc010tyt.1	-	266		c.10825G>A			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						ACCAGCTGCACCTCACACTGG	0.522													15	54					0	0	0.004990	0	0
ADAM6	8755	broad.mit.edu	37	14	106926618	106926618	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:106926618G>A	uc010tyt.1	-	234		c.10040C>T			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.473													25	62					0	0	0.006320	0	0
ADAM6	8755	broad.mit.edu	37	14	107034960	107034960	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:107034960G>A	uc010tyt.1	-	154		c.7273C>T			uc001ysz.2_Silent_p.S40S					Parts of antibodies, mostly variable regions.												0						AACCCTTACAGGAGATCTTCA	0.562													6	10					0	0	0.001168	0	0
ADAM6	8755	broad.mit.edu	37	14	107099352	107099352	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:107099352C>T	uc010tyt.1	-	96		c.4411G>A								Parts of antibodies, mostly variable regions.												0						GAAGGTGAATCCAGAGGCTGC	0.552													11	34					0	0	0.000978	0	0
ADAM6	8755	broad.mit.edu	37	14	107281114	107281114	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr14:107281114C>T	uc010tyt.1	-	5		c.268G>A								Parts of antibodies, mostly variable regions.												0						TGTATCCAATCCATTCCAGCC	0.542													4	7					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	15	20490586	20490586	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:20490586C>T	uc001ytf.1	+	4		c.566C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		ACTGTGGCTTCAGGTGGGTGT	0.468													20	272					0	0	0.002299	0	0
NF1P1	440225	broad.mit.edu	37	15	22145437	22145437	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:22145437C>T	uc010tzs.1	-	2		c.246G>A								Human NF1-related locus DNA in A9 mouse DNA background.												0						CCTTGATCACCCATCACTGTG	0.443													4	21					0	0	0.009096	0	0
C15orf2	23742	broad.mit.edu	37	15	24921643	24921643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:24921643G>A	uc001ywo.2	+	1	1103	c.629G>A	c.(628-630)GGA>GAA	p.G210E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	210					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTCTGGAGGGAAATGTCTAC	0.612													7	32					0	0	0.003080	0	0
C15orf2	23742	broad.mit.edu	37	15	24922858	24922858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:24922858G>A	uc001ywo.2	+	1	2318	c.1844G>A	c.(1843-1845)GGA>GAA	p.G615E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	615					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		AGGCACCCGGGAAAGACATCA	0.473													17	52					0	0	0.006122	0	0
HERC2	8924	broad.mit.edu	37	15	28414666	28414666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:28414666G>A	uc001zbj.2	-	66	10299	c.10193C>T	c.(10192-10194)TCA>TTA	p.S3398L		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3398					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AAGAATATGTGATAAGGCCTG	0.373													13	10					0	0	0.001855	0	0
RYR3	6263	broad.mit.edu	37	15	34040321	34040321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:34040321G>A	uc001zhi.2	+	54	8066	c.7996G>A	c.(7996-7998)GAA>AAA	p.E2666K	RYR3_uc010bar.2_Missense_Mutation_p.E2666K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2666	3.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTAGGAGAAGGAAATTTATCG	0.547													27	20					0	0	0.008361	0	0
TYRO3	7301	broad.mit.edu	37	15	41854896	41854896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:41854896C>T	uc001zof.1	+	4	784	c.560C>T	c.(559-561)CCA>CTA	p.P187L		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	187	Ig-like C2-type 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GCTCCCTCTCCATCTGTTTTA	0.572													5	16					0	0	0.001984	0	0
DUOX2	50506	broad.mit.edu	37	15	45399629	45399629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:45399629C>T	uc010bea.2	-	14	1810	c.1607G>A	c.(1606-1608)CGA>CAA	p.R536Q	DUOX2_uc001zun.2_Missense_Mutation_p.R536Q	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	536	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		GGTGGTATTTCGGATGTCTTC	0.557													23	51					0	0	0.002299	0	0
DMXL2	23312	broad.mit.edu	37	15	51857296	51857296	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:51857296C>T	uc002abf.2	-	4	578	c.353G>A	c.(352-354)TGG>TAG	p.W118*	DMXL2_uc010ufy.1_Nonsense_Mutation_p.W118*|DMXL2_uc010bfa.2_Nonsense_Mutation_p.W118*	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	118	WD 1.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TTGAGGATCCCATGCTAAGTT	0.279													3	4					0	0	0.004672	0	0
UNC13C	440279	broad.mit.edu	37	15	54305959	54305959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:54305959G>A	uc002ack.2	+	1	859	c.859G>A	c.(859-861)GAA>AAA	p.E287K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	287					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGTACAAAGTGAAATTGAGCA	0.458													30	35					0	0	0.009535	0	0
NARG2	79664	broad.mit.edu	37	15	60758794	60758794	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:60758794T>C	uc002agp.2	-	5	762	c.527A>G	c.(526-528)GAG>GGG	p.E176G	NARG2_uc002ago.2_Missense_Mutation_p.E39G|NARG2_uc010bgk.2_Missense_Mutation_p.E176G|NARG2_uc002agr.1_Missense_Mutation_p.E176G	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	176						nucleus				ovary(1)|lung(1)	2						TTTTTTTACCTCTGTGAAGAG	0.378													12	28					0	0	0.001855	0	0
ZNF609	23060	broad.mit.edu	37	15	64968228	64968228	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:64968228C>T	uc002ann.2	+	4	3175	c.3175C>T	c.(3175-3177)CTG>TTG	p.L1059L		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	1059						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CCTGACAGACCTGGTGAAATC	0.562													21	39					0	0	0.002299	0	0
C15orf59	388135	broad.mit.edu	37	15	74032662	74032662	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:74032662A>T	uc002avy.2	-	2	823	c.478T>A	c.(478-480)TCC>ACC	p.S160T		NM_001039614	NP_001034703	Q2T9L4	CO059_HUMAN	hypothetical protein LOC388135	160										pancreas(1)	1						TCCTCACTGGAGGAGTCTGGG	0.662													19	32					0	0	0.006122	0	0
SNX33	257364	broad.mit.edu	37	15	75949417	75949417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:75949417C>T	uc002bau.2	+	2	1682	c.1586C>T	c.(1585-1587)GCC>GTC	p.A529V	SNX33_uc002bav.2_Missense_Mutation_p.A142V	NM_153271	NP_695003	Q8WV41	SNX33_HUMAN	sorting nexin 33	529	BAR.				cell communication		phosphatidylinositol binding|protein binding			ovary(1)	1						GCCCTGCAGGCCGAGATGAAC	0.627													19	33					0	0	0.010504	0	0
AP3B2	8120	broad.mit.edu	37	15	83350185	83350185	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:83350185G>T	uc010uoh.1	-	5	685	c.508C>A	c.(508-510)CCT>ACT	p.P170T	AP3B2_uc010uoi.1_Missense_Mutation_p.P170T|AP3B2_uc010uoj.1_Missense_Mutation_p.P138T|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	170					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TAGAGTTTAGGGATGGCGTGG	0.572													4	41					0.00024832	0.000252143	0.009096	1	0
FSD2	123722	broad.mit.edu	37	15	83437701	83437701	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:83437701A>G	uc002bjd.2	-	9	1651	c.1484T>C	c.(1483-1485)CTG>CCG	p.L495P	FSD2_uc010uol.1_Missense_Mutation_p.L450P|FSD2_uc010uom.1_Missense_Mutation_p.L450P	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	495	Fibronectin type-III 2.									central_nervous_system(1)	1						CACAGGATTCAGGTTCCCAGA	0.522													2	7					0	0	0.004672	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651847	84651847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:84651847G>A	uc002bjz.3	+	21	3691	c.3467G>A	c.(3466-3468)GGG>GAG	p.G1156E	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.G1156E|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.G1156E	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1156						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GGGGAAACAGGGAGTGTGTCC	0.547													13	14					0	0	0.001368	0	0
AGBL1	123624	broad.mit.edu	37	15	86697687	86697687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:86697687G>A	uc002blz.1	+	3	231	c.151G>A	c.(151-153)GAA>AAA	p.E51K		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	51					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						GAAGGCCCTAGAATTGGAAGC	0.448													4	14					0	0	0.009096	0	0
ACAN	176	broad.mit.edu	37	15	89398533	89398533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:89398533C>T	uc010upo.1	+	12	3091	c.2717C>T	c.(2716-2718)TCC>TTC	p.S906F	ACAN_uc010upp.1_Missense_Mutation_p.S906F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	906					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGTCTTACTTCCACAGTGGGC	0.572													5	25					0	0	0.000602	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92981769	92981769	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:92981769C>T	uc002bra.2	+	4	632	c.477C>T	c.(475-477)ATC>ATT	p.I159I	ST8SIA2_uc002brb.2_Silent_p.I138I	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	159	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			CTTGTGCCATCGTGGGCAACT	0.577													19	23					0	0	0.006122	0	0
C15orf51	196968	broad.mit.edu	37	15	100332964	100332964	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:100332964G>A	uc010urx.1	-	5		c.1228C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GGGCAGGCAGGGGCAGGGGAG	0.617													5	30					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	15	102312120	102312120	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr15:102312120C>T	uc010utj.1	+	1		c.62C>T			uc010utk.1_5'Flank|uc010utl.1_5'Flank|uc010utm.1_5'Flank|uc002ccq.3_5'Flank|uc010utn.1_5'Flank|uc002ccs.1_5'Flank|uc010uto.1_5'Flank|uc002cct.1_5'Flank|uc002ccu.2_5'Flank|uc002ccv.1_5'Flank					DQ584631																		CTCCCCTGCCCCTGCCTGCCC	0.622													18	80					0	0	0.008871	0	0
C1QTNF8	390664	broad.mit.edu	37	16	1144728	1144728	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:1144728G>A	uc010uuw.1	-	3	469	c.195C>T	c.(193-195)ATC>ATT	p.I65I		NM_207419	NP_997302	P60827	C1QT8_HUMAN	C1q and tumor necrosis factor related protein 8	65						collagen				skin(1)	1		Hepatocellular(780;0.00369)				TGAGGATTTCGATGTCTATAG	0.672													13	32					0	0	0.001368	0	0
ZNF598	90850	broad.mit.edu	37	16	2052210	2052210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:2052210C>T	uc002cof.1	-	7	907	c.892G>A	c.(892-894)GAG>AAG	p.E298K	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	298						intracellular	zinc ion binding			lung(1)|breast(1)	2						TGCTCACCCTCGTTCCGGCGC	0.692													4	8					0	0	0.009096	0	0
PKD1	5310	broad.mit.edu	37	16	2153848	2153848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:2153848G>A	uc002cos.1	-	23	8419	c.8210C>T	c.(8209-8211)TCA>TTA	p.S2737L	PKD1_uc002cot.1_Missense_Mutation_p.S2737L|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2737	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						TCCCAGCTCTGAGGGCTGTGG	0.562													7	16					0	0	0.001984	0	0
ABCA3	21	broad.mit.edu	37	16	2376160	2376160	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:2376160T>A	uc002cpy.1	-	5	882	c.170A>T	c.(169-171)TAC>TTC	p.Y57F	ABCA3_uc010bsk.1_Missense_Mutation_p.Y57F|ABCA3_uc010bsl.1_Missense_Mutation_p.Y57F|ABCA3_uc002cpz.1_Missense_Mutation_p.Y57F	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	57					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CTGGCCCGGGTAGATGGTGGC	0.577													20	31					0	0	0.002299	0	0
MEFV	4210	broad.mit.edu	37	16	3293258	3293258	+	Silent	SNP	G	A	A	rs104895152		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:3293258G>A	uc002cun.1	-	10	2269	c.2229C>T	c.(2227-2229)TTC>TTT	p.F743F		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	743	B30.2/SPRY.		F -> L (in arFMF).		inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	AGCAGCTGGCGAATGTATAGA	0.517													20	61					0	0	0.010504	0	0
OR2C1	4993	broad.mit.edu	37	16	3406086	3406086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:3406086C>T	uc002cuw.1	+	1	198	c.146C>T	c.(145-147)TCC>TTC	p.S49F		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATCTTGCTTTCCCGCCTGGAG	0.512													27	81					0	0	0.006320	0	0
ZNF174	7727	broad.mit.edu	37	16	3454464	3454464	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:3454464G>A	uc002cvc.2	+	2	1256	c.441G>A	c.(439-441)GAG>GAA	p.E147E	ZNF174_uc002cva.2_Silent_p.E147E|ZNF174_uc002cvb.2_Silent_p.E147E	NM_003450	NP_003441	Q15697	ZN174_HUMAN	zinc finger protein 174 isoform a	147					negative regulation of transcription from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|cytoplasm|nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0						TGCTCTTGGAGAAAACTGGAT	0.527													35	94					0	0	0.006999	0	0
ZNF597	146434	broad.mit.edu	37	16	3486612	3486612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:3486612G>A	uc002cvd.2	-	4	1271	c.1087C>T	c.(1087-1089)CAT>TAT	p.H363Y		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	363	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCCTCTGTATGAATGTTCtga	0.279													4	3					0	0	0.009096	0	0
CREBBP	1387	broad.mit.edu	37	16	3900838	3900838	+	Silent	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:3900838T>A	uc002cvv.2	-	2	462	c.258A>T	c.(256-258)ATA>ATT	p.I86I	CREBBP_uc002cvw.2_Silent_p.I86I	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	86					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TCACATTTCCTATTCCTGGGT	0.562			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				17	37					0	0	0.006122	0	0
C16orf68	79091	broad.mit.edu	37	16	8732970	8732970	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:8732970C>T	uc002cyz.2	+	6	999	c.723C>T	c.(721-723)TCC>TCT	p.S241S	C16orf68_uc002cza.2_Silent_p.S185S	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	241							methyltransferase activity				0						ATCTCTTGTCCATGTGCCAGC	0.542													16	32					0	0	0.006122	0	0
USP7	7874	broad.mit.edu	37	16	8995974	8995974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:8995974G>A	uc002czl.2	-	18	2211	c.2012C>T	c.(2011-2013)GCT>GTT	p.A671V	USP7_uc010uyk.1_Missense_Mutation_p.A572V|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.A572V|USP7_uc002czk.2_Missense_Mutation_p.A655V|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	671	Interaction with ICP0/VMW110.				interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						CGCTCCACTAGCAGCCAGCTC	0.458													16	46					0	0	0.007413	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858604	9858605	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:9858604_9858605CC>TT	uc002czo.3	-	13	3344_3345	c.2796_2797GG>AA	c.(2794-2799)ATGGAC>ATAAAC	p.932_933MD>IN	GRIN2A_uc010uym.1_Missense_Mutation_p.932_933MD>IN|GRIN2A_uc010uyn.1_Missense_Mutation_p.775_776MD>IN|GRIN2A_uc002czr.3_Missense_Mutation_p.932_933MD>IN	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	932_933	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GAAACCATGTCCATGATGAGGG	0.441													36	69					0	0	0.004672	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11864800	11864800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:11864800G>A	uc002dbk.2	-	9	1145	c.947C>T	c.(946-948)TCT>TTT	p.S316F	ZC3H7A_uc002dbl.2_Missense_Mutation_p.S316F|ZC3H7A_uc002dbm.1_Intron	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	316						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CATGCTAGGAGAGACACTGGC	0.483													23	53					0	0	0.003330	0	0
MKL2	57496	broad.mit.edu	37	16	14306259	14306259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:14306259G>A	uc010uza.1	+	5	424	c.269G>A	c.(268-270)CGA>CAA	p.R90Q	MKL2_uc002dcg.2_Missense_Mutation_p.R90Q|MKL2_uc002dch.2_Missense_Mutation_p.R79Q|MKL2_uc010uzb.1_Missense_Mutation_p.R39Q	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	79					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						AGCTTGGAACGAGCCAGAGTA	0.388													14	24					0	0	0.001855	0	0
ABCC6	368	broad.mit.edu	37	16	16267236	16267237	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:16267236_16267237CC>TT	uc002den.3	-	21	2728_2729	c.2691_2692GG>AA	c.(2689-2694)AAGGAC>AAAAAC	p.D898N	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	898	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GTGGTACGGTCCTTCTCAGGGA	0.535													9	45					0	0	0.004672	0	0
GPR139	124274	broad.mit.edu	37	16	20043675	20043675	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:20043675G>A	uc002dgu.1	-	2	606	c.444C>T	c.(442-444)GTC>GTT	p.V148V	GPR139_uc010vaw.1_Silent_p.V55V	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	148	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CACTTACAATGACTTTCCGGG	0.512													31	74					0	0	0.002096	0	0
ACSM2B	348158	broad.mit.edu	37	16	20565132	20565132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:20565132G>A	uc002dhj.3	-	6	917	c.707C>T	c.(706-708)TCG>TTG	p.S236L	ACSM2B_uc002dhk.3_Missense_Mutation_p.S236L|ACSM2B_uc010bwf.1_Missense_Mutation_p.S236L	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	236					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GCCCAGGCTCGAGTAGGAATG	0.507													23	45					0	0	0.003954	0	0
ACSM1	116285	broad.mit.edu	37	16	20673121	20673121	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:20673121G>A	uc002dhm.1	-	6	1055	c.987C>T	c.(985-987)TTC>TTT	p.F329F	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.F329F	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	329					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CATACCTGGTGAAATCCTGCT	0.388													8	21					0	0	0.008291	0	0
LOC81691	81691	broad.mit.edu	37	16	20857542	20857542	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:20857542G>A	uc002dhv.2	+	19	2388	c.2125_splice	c.e19-1	p.T709_splice	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Splice_Site_p.T678_splice|LOC81691_uc002dhw.2_Splice_Site_p.T452_splice|LOC81691_uc002dhy.3_Splice_Site_p.T709_splice	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1							nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						TTTGATCCCAGACTCTGAAAC	0.547													49	110					0	0	0.003610	0	0
ZP2	7783	broad.mit.edu	37	16	21211163	21211163	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:21211163G>A	uc002dii.2	-	15	1731	c.1731C>T	c.(1729-1731)TTC>TTT	p.F577F	ZP2_uc010bwn.1_Silent_p.F607F	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	577	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		CGACTGGATGGAAGGTGGTCT	0.502													17	50					0	0	0.007413	0	0
JMJD5	79831	broad.mit.edu	37	16	27221559	27221559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:27221559G>A	uc002doh.2	+	2	297	c.115G>A	c.(115-117)GAG>AAG	p.E39K	JMJD5_uc010bxv.2_Missense_Mutation_p.E39K|JMJD5_uc010vcn.1_Missense_Mutation_p.E77K|JMJD5_uc010bxw.2_Missense_Mutation_p.E39K	NM_024773	NP_079049	Q8N371	KDM8_HUMAN	jumonji domain containing 5 isoform 2	39					G2/M transition of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|histone demethylase activity (H3-K36 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(2)|upper_aerodigestive_tract(1)	3						GGACCTCGGGGAGAAAGTGGA	0.612													18	23					0	0	0.006122	0	0
APOB48R	55911	broad.mit.edu	37	16	28509501	28509501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:28509501C>T	uc002dqb.1	+	4	3038	c.3028C>T	c.(3028-3030)CGG>TGG	p.R1010W	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.R548W	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	1010					cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						CTCTTTTCGTCGGACTCCGGC	0.682													7	4					0	0	0.001984	0	0
SULT1A2	6799	broad.mit.edu	37	16	28603627	28603627	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:28603627G>A	uc002dqg.1	-	7	1083	c.732C>T	c.(730-732)CGC>CGT	p.R244R	uc010vct.1_Intron|SULT1A2_uc002dqh.1_Silent_p.R244R	NM_177528	NP_803564	P50226	ST1A2_HUMAN	sulfotransferase family, cytosolic, 1A,	244					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine biosynthetic process|catecholamine metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						TGAACTCCCGGCGGACGGTGG	0.607													32	92					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	16	32077634	32077634	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:32077634G>A	uc010vfu.1	+	1		c.76G>A								Homo sapiens mRNA for immunoglobulin heavy chain, VHDJH rearrangement : VHLI26.																		ATCTGCAAATGAACAGCCTGA	0.512													54	314					0	0	0.003610	0	0
ABCC12	94160	broad.mit.edu	37	16	48175116	48175116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:48175116C>T	uc002efc.1	-	3	770	c.424G>A	c.(424-426)GTG>ATG	p.V142M	ABCC12_uc002eey.1_Splice_Site|ABCC12_uc002eez.1_Splice_Site|ABCC12_uc002efa.1_Splice_Site|ABCC12_uc002efb.1_Splice_Site|ABCC12_uc002efd.1_Splice_Site|ABCC12_uc002efe.1_Splice_Site_p.P141_splice|ABCC12_uc010vgj.1_Splice_Site	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	142	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GCCGCACTCACCGGCCCTATG	0.547													8	18					0	0	0.004482	0	0
SALL1	6299	broad.mit.edu	37	16	51175809	51175809	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:51175809C>T	uc010vgs.1	-	2	355	c.324G>A	c.(322-324)GTG>GTA	p.V108V	SALL1_uc010vgr.1_Silent_p.V11V|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	108					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CGCTGCAGTCCACTTGATCTG	0.532													29	65					0	0	0.002445	0	0
NLRC5	84166	broad.mit.edu	37	16	57060009	57060009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:57060009C>T	uc002ekk.1	+	6	1379	c.1154C>T	c.(1153-1155)TCG>TTG	p.S385L	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Missense_Mutation_p.S190L|NLRC5_uc002ekl.2_Missense_Mutation_p.S190L|NLRC5_uc002ekm.2_Missense_Mutation_p.S190L|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	385	NACHT.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GCCCAGCCATCGCGGGAGGGG	0.547													35	103					0	0	0.005524	0	0
CNGB1	1258	broad.mit.edu	37	16	57931709	57931709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:57931709C>T	uc002emt.2	-	30	3151	c.3086G>A	c.(3085-3087)GGA>GAA	p.G1029E	CNGB1_uc010cdh.2_Missense_Mutation_p.G1023E	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	1029	Cytoplasmic (Potential).|cAMP (By similarity).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						CCTTATTTCTCCAAACACAGA	0.592													51	287					0	0	0.003610	0	0
ZNF319	57567	broad.mit.edu	37	16	58031661	58031661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:58031661G>A	uc002emx.1	-	2	1132	c.509C>T	c.(508-510)GCT>GTT	p.A170V		NM_020807	NP_065858	Q9P2F9	ZN319_HUMAN	zinc finger protein 319	170					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGCTGCCTCAGCTGGCTTGTA	0.622													208	123					0	0	0.003610	0	0
PDP2	57546	broad.mit.edu	37	16	66919126	66919126	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:66919126C>G	uc002eqk.1	+	2	1101	c.939C>G	c.(937-939)AAC>AAG	p.N313K		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	313					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		ATGCCTGGAACCAGGCCGAGC	0.592													49	30					0	0	0.003610	0	0
CES3	23491	broad.mit.edu	37	16	67000697	67000697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:67000697G>A	uc002eqt.2	+	8	1064	c.991G>A	c.(991-993)GAG>AAG	p.E331K	CES3_uc010cdz.2_Missense_Mutation_p.E331K|CES3_uc010cea.2_RNA|CES3_uc010viw.1_5'Flank	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	331						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		ACTCCTGAAGGAGAAGCCCTT	0.542													33	209					0	0	0.004289	0	0
TMCO7	79613	broad.mit.edu	37	16	68941384	68941384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:68941384C>T	uc002ewi.3	+	10	1718	c.1706C>T	c.(1705-1707)TCC>TTC	p.S569F		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	569						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		CAGAAGGTATCCTCTGAGCAG	0.473													86	139					0	0	0.003610	0	0
HYDIN	54768	broad.mit.edu	37	16	70891771	70891771	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:70891771G>A	uc002ezr.2	-	72	12257	c.12129C>T	c.(12127-12129)ATC>ATT	p.I4043I	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4044										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ACTGGAACACGATCTAACAAG	0.478													4	54					0	0	0.000602	0	0
HYDIN	54768	broad.mit.edu	37	16	71098709	71098709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:71098709C>T	uc002ezr.2	-	16	2238	c.2110G>A	c.(2110-2112)GAG>AAG	p.E704K	HYDIN_uc010cfz.1_Missense_Mutation_p.E449K|HYDIN_uc002ezv.2_Missense_Mutation_p.E704K|HYDIN_uc010vmc.1_Missense_Mutation_p.E721K|HYDIN_uc010vmd.1_Missense_Mutation_p.E731K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	704										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AAGTCCACCTCTGTATTGACC	0.502													28	32					0	0	0.007291	0	0
PMFBP1	83449	broad.mit.edu	37	16	72184698	72184698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:72184698G>A	uc002fcc.3	-	5	617	c.445C>T	c.(445-447)CAC>TAC	p.H149Y	PMFBP1_uc002fcd.2_Missense_Mutation_p.H149Y|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.H4Y	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	149										ovary(2)	2		Ovarian(137;0.179)				TTCTCGTTGTGATTTCCCATT	0.502													19	230					0	0	0.003954	0	0
BCMO1	53630	broad.mit.edu	37	16	81303970	81303970	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:81303970C>T	uc002fgn.1	+	7	1268	c.1050C>T	c.(1048-1050)CTC>CTT	p.L350L	BCMO1_uc010vnp.1_Silent_p.L281L	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	350					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						ACTCCAGGCTCACCTCGGTCC	0.562													18	27					0	0	0.008871	0	0
ATP2C2	9914	broad.mit.edu	37	16	84482186	84482186	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr16:84482186C>T	uc002fhx.2	+	17	1640	c.1551C>T	c.(1549-1551)ATC>ATT	p.I517I	ATP2C2_uc010chj.2_Silent_p.I517I|ATP2C2_uc002fhy.2_Silent_p.I534I|ATP2C2_uc002fhz.2_Silent_p.I366I	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	517	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						AAGAGGTGATCCGCTACTGCA	0.527													25	25					0	0	0.003954	0	0
VPS53	55275	broad.mit.edu	37	17	613784	613784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:613784G>A	uc002frn.2	-	2	304	c.157C>T	c.(157-159)CCA>TCA	p.P53S	VPS53_uc010cjo.1_Missense_Mutation_p.P53S|VPS53_uc002frl.2_RNA|VPS53_uc002frm.2_Missense_Mutation_p.P53S|VPS53_uc002fro.2_5'UTR|VPS53_uc010cjp.1_Missense_Mutation_p.P53S	NM_018289	NP_060759	Q5VIR6	VPS53_HUMAN	vacuolar protein sorting 53 isoform 2	53					protein transport	endosome membrane|Golgi apparatus					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0265)		TGCTCGGTTGGGAACAGGGTA	0.418													16	34					0	0	0.008871	0	0
DPH1	1801	broad.mit.edu	37	17	1943834	1943834	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:1943834C>T	uc002fts.2	+	9	975	c.957C>T	c.(955-957)TCC>TCT	p.S319S	DPH1_uc002ftr.1_RNA|DPH1_uc002ftt.2_Silent_p.S303S|DPH1_uc010cjx.2_Silent_p.S179S|DPH1_uc010vqs.1_Silent_p.S329S|DPH1_uc002ftu.2_Silent_p.S75S|DPH1_uc002ftv.2_Silent_p.S75S|DPH1_uc002ftw.2_Silent_p.S47S|OVCA2_uc002ftx.2_5'Flank	NM_001383	NP_001374	Q9BZG8	DPH1_HUMAN	diptheria toxin resistance protein required for	319					peptidyl-diphthamide biosynthetic process from peptidyl-histidine|translation	cytoplasm|nucleus				pancreas(1)	1						TGGGCCTTTCCTTTGTGAGGC	0.567													19	42					0	0	0.010504	0	0
OR1D4	8385	broad.mit.edu	37	17	2966263	2966263	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:2966263G>A	uc010vra.1	-	1	693	c.693C>T	c.(691-693)TTC>TTT	p.F231F		NM_003552	NP_003543			olfactory receptor, family 1, subfamily D,												0						ATGTGGTCATGAACCCTAAGG	0.493													6	12					0	0	0.006214	0	0
OR3A2	4995	broad.mit.edu	37	17	3181392	3181392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:3181392C>T	uc002fvg.2	-	1	877	c.838G>A	c.(838-840)GAT>AAT	p.D280N		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	280	Extracellular (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						ACCCCTTTATCCTTGTCTGAA	0.478													14	32					0	0	0.002450	0	0
ITGAE	3682	broad.mit.edu	37	17	3655001	3655001	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:3655001G>A	uc002fwo.3	-	15	1935	c.1836C>T	c.(1834-1836)TTC>TTT	p.F612F		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	612	FG-GAP 6.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		ACACACTGCCGAAGCTGGCAC	0.612													18	56					0	0	0.006122	0	0
DLG4	1742	broad.mit.edu	37	17	7106568	7106568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:7106568C>T	uc002get.3	-	9	1916	c.715G>A	c.(715-717)GAA>AAA	p.E239K	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Missense_Mutation_p.E136K|DLG4_uc010cly.2_Missense_Mutation_p.E193K|DLG4_uc010vto.1_Missense_Mutation_p.E236K|DLG4_uc002geu.2_Missense_Mutation_p.E193K	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	196	PDZ 2.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						GCACCCCCTTCGATGATCTTT	0.547													4	17					0	0	0.001168	0	0
DNAH2	146754	broad.mit.edu	37	17	7664188	7664188	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:7664188C>T	uc002giu.1	+	17	2930	c.2916C>T	c.(2914-2916)TCC>TCT	p.S972S		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	972	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACAAGGACTCCTTCATTCATC	0.532													23	38					0	0	0.003954	0	0
DNAH2	146754	broad.mit.edu	37	17	7680855	7680855	+	Missense_Mutation	SNP	T	C	C	rs147602777	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:7680855T>C	uc002giu.1	+	32	5164	c.5150T>C	c.(5149-5151)ATT>ACT	p.I1717T		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1717	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACGATAGAAATTCATGCCCGG	0.478													106	228					0	0	0.003610	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8215754	8215754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:8215754C>T	uc002glc.2	+	2	518	c.397C>T	c.(397-399)CCC>TCC	p.P133S	ARHGEF15_uc002glb.1_Missense_Mutation_p.P133S|ARHGEF15_uc002gld.2_Missense_Mutation_p.P133S|ARHGEF15_uc010vuw.1_Missense_Mutation_p.P133S	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	133	Pro-rich.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GCCTCTGCTCCCCATGGCTGG	0.677													17	64					0	0	0.004990	0	0
MFSD6L	162387	broad.mit.edu	37	17	8701850	8701850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:8701850G>A	uc002glp.1	-	1	737	c.589C>T	c.(589-591)CAT>TAT	p.H197Y		NM_152599	NP_689812	Q8IWD5	MFS6L_HUMAN	major facilitator superfamily domain containing	197						integral to membrane				central_nervous_system(1)	1						TCCCAGGGATGATCTTTCAGC	0.562													24	59					0	0	0.002780	0	0
PIK3R6	146850	broad.mit.edu	37	17	8726721	8726721	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:8726721G>A	uc002glq.1	-	14	1849	c.1609C>T	c.(1609-1611)CAG>TAG	p.Q537*	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	537					platelet activation	cytosol					0						GTGTAGATCTGGAAATAGATG	0.557													7	17					0	0	0.001984	0	0
MYH4	4622	broad.mit.edu	37	17	10362577	10362577	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:10362577G>A	uc002gmn.2	-	15	1689	c.1578C>T	c.(1576-1578)CTC>CTT	p.L526L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	526	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CCTTCTCGATGAGCTCGATGC	0.478													22	55					0	0	0.003954	0	0
MYH2	4620	broad.mit.edu	37	17	10429959	10429959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:10429959C>T	uc010coi.2	-	30	4272	c.4144G>A	c.(4144-4146)GAG>AAG	p.E1382K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1382K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1382	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCGTCCGTCTCGTATTTGGTC	0.532													43	87					0	0	0.003610	0	0
MYH2	4620	broad.mit.edu	37	17	10436665	10436665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:10436665C>T	uc010coi.2	-	21	2506	c.2378G>A	c.(2377-2379)CGA>CAA	p.R793Q	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.R793Q|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	793	IQ.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GGCCTGGGTTCGGGTAATCAG	0.473													16	40					0	0	0.007413	0	0
MYH2	4620	broad.mit.edu	37	17	10447105	10447105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:10447105G>A	uc010coi.2	-	8	792	c.664C>T	c.(664-666)CAA>TAA	p.Q222*	uc002gml.1_Intron|MYH2_uc002gmp.3_Nonsense_Mutation_p.Q222*|MYH2_uc010coj.2_Nonsense_Mutation_p.Q222*	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	222	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTGATGATTTGATCTTCCAGA	0.522													12	30					0	0	0.001368	0	0
RICH2	9912	broad.mit.edu	37	17	12819328	12819328	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:12819328G>A	uc002gnr.3	+	5	714	c.387G>A	c.(385-387)GAG>GAA	p.E129E	RICH2_uc010vvk.1_Silent_p.E129E|RICH2_uc010vvl.1_Silent_p.E129E|RICH2_uc002gns.3_5'UTR|RICH2_uc010vvm.1_Silent_p.E129E|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	129	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						TGCTGGCGGAGGTAAGCAGCA	0.512													12	14					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	17	16734794	16734794	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:16734794G>A	uc010vwr.1	-	3	781	c.339C>T	c.(337-339)GCC>GCT	p.A113A						SubName: Full=cDNA FLJ53570, highly similar to Keratin, type I cytoskeletal 16;																		GGTCAGTCCTGGCCAGGGTCA	0.622													3	23					0	0	0.004672	0	0
NT5M	56953	broad.mit.edu	37	17	17207002	17207002	+	Silent	SNP	G	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:17207002G>C	uc002grf.2	+	1	323	c.138G>C	c.(136-138)CTG>CTC	p.L46L	NT5M_uc002gre.2_Silent_p.L46L|NT5M_uc002grg.2_Silent_p.L46L	NM_020201	NP_064586	Q9NPB1	NT5M_HUMAN	5',3'-nucleotidase, mitochondrial precursor	46					DNA replication|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	5'-nucleotidase activity|metal ion binding|nucleotide binding				0						ACGGCGTGCTGGCTGACTTCG	0.498													8	18					0	0	0.008291	0	0
LLGL1	3996	broad.mit.edu	37	17	18143908	18143908	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:18143908C>T	uc002gsp.2	+	17	2284	c.2223C>T	c.(2221-2223)CCC>CCT	p.P741P		NM_004140	NP_004131	Q15334	L2GL1_HUMAN	lethal giant larvae homolog 1	741	WD 11.				cortical actin cytoskeleton organization|exocytosis|protein complex assembly	cortical actin cytoskeleton	protein kinase binding|structural molecule activity			breast(2)|skin(2)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)	6	all_neural(463;0.228)					ACCACGGGCCCACCATGTGGG	0.617													39	116					0	0	0.002522	0	0
Unknown	0	broad.mit.edu	37	17	19349863	19349863	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:19349863G>A	uc002gvw.2	-	1		c.316C>T								Homo sapiens mRNA for ribosomal protein S2, partial cds.																		ATCCTTGAGAGAGGCCCCCAG	0.507													3	7					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	17	20744483	20744483	+	RNA	SNP	A	G	G	rs9906250	by1000genomes	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:20744483A>G	uc010crb.1	+	1		c.143A>G								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		GCCTGAGCCCAAGCCGGGGCC	0.751													6	13					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	17	20805643	20805643	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:20805643G>A	uc002gyg.1	+	4		c.827G>A			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		AGACGACGACGAAGTCTCCCA	0.557													12	31					0	0	0.001855	0	0
SEZ6	124925	broad.mit.edu	37	17	27285069	27285069	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:27285069A>T	uc002hdp.2	-	11	2392	c.2198T>A	c.(2197-2199)GTG>GAG	p.V733E	SEZ6_uc010crx.1_5'Flank|SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.V733E|SEZ6_uc002hdq.1_Missense_Mutation_p.V608E	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	733	Extracellular (Potential).|Sushi 3.					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			GTAAGTGACCACGGTGCCGTG	0.612													17	36					0	0	0.004990	0	0
PIPOX	51268	broad.mit.edu	37	17	27383203	27383203	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:27383203C>T	uc002hdr.1	+	8	1379	c.1053C>T	c.(1051-1053)TTC>TTT	p.F351F		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	351					tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	GGCACGGGTTCAAGCTGGCCC	0.522													15	42					0	0	0.004007	0	0
SSH2	85464	broad.mit.edu	37	17	27998981	27998981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:27998981G>A	uc002heo.1	-	8	700	c.700C>T	c.(700-702)CCC>TCC	p.P234S	SSH2_uc010wbh.1_Missense_Mutation_p.P261S|SSH2_uc002hep.1_Missense_Mutation_p.P234S	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	234					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						GGAGAGTCGGGCCGGTGGGAC	0.443													33	85					0	0	0.003755	0	0
TMIGD1	388364	broad.mit.edu	37	17	28656313	28656313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:28656313C>T	uc002hfa.1	-	3	390	c.317G>A	c.(316-318)GGG>GAG	p.G106E	TMIGD1_uc010csh.1_Missense_Mutation_p.G106E	NM_206832	NP_996663	Q6UXZ0	TMIG1_HUMAN	transmembrane and immunoglobulin domain	106	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane					0						CTGATCCCTCCCCAGCCTGCA	0.458													13	37					0	0	0.002450	0	0
TBC1D29	26083	broad.mit.edu	37	17	28890221	28890221	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:28890221C>T	uc002hfh.2	+	5	380	c.231C>T	c.(229-231)GCC>GCT	p.A77A	TBC1D29_uc002hfi.2_RNA	NM_015594	NP_056409	Q9UFV1	TBC29_HUMAN	TBC1 domain family, member 29	77						intracellular	Rab GTPase activator activity				0		Myeloproliferative disorder(56;0.0255)				CTCACAGGGCCCTCAAGGGCA	0.632													3	7					0	0	0.004672	0	0
NF1	4763	broad.mit.edu	37	17	29559743	29559743	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:29559743T>A	uc002hgg.2	+	26	3673	c.3340T>A	c.(3340-3342)TTG>ATG	p.L1114M	NF1_uc002hgh.2_Missense_Mutation_p.L1114M|NF1_uc010csn.1_Missense_Mutation_p.L974M|NF1_uc002hgi.1_Missense_Mutation_p.L147M	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1114					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TATGAACCTTTTGAATGACTG	0.433			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			6	11					0	0	0.001168	0	0
ZNF207	7756	broad.mit.edu	37	17	30694883	30694883	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:30694883C>T	uc002hhh.3	+	9	1114	c.966C>T	c.(964-966)TTC>TTT	p.F322F	ZNF207_uc002hhj.3_Silent_p.F338F|ZNF207_uc002hhi.3_Silent_p.F307F|ZNF207_uc010csz.2_Silent_p.F341F|ZNF207_uc002hhk.1_Silent_p.F338F|ZNF207_uc002hhl.1_RNA	NM_003457	NP_003448	O43670	ZN207_HUMAN	zinc finger protein 207 isoform a	322						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Breast(31;0.116)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.239)			AGCCTACATTCCCTGCTTATA	0.438													25	31					0	0	0.003330	0	0
CCL8	6355	broad.mit.edu	37	17	32647872	32647872	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:32647872G>A	uc002hib.2	+	3	701	c.246G>A	c.(244-246)TGG>TGA	p.W82*		NM_005623	NP_005614	P80075	CCL8_HUMAN	small inducible cytokine A8 precursor	82					calcium ion transport|cell-cell signaling|chemotaxis|exocytosis|immune response|inflammatory response|response to virus	extracellular space	chemokine activity|heparin binding|signal transducer activity				0		Ovarian(249;0.0443)|Breast(31;0.151)				AGGAGAGATGGGTCAGGGATT	0.478													6	25					0	0	0.003080	0	0
CCL4L2	388372	broad.mit.edu	37	17	34539888	34539888	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:34539888C>T	uc010cuj.2	+	3	272	c.196C>T	c.(196-198)CAA>TAA	p.Q66*	CCL4L2_uc002hlh.1_Intron|CCL4L2_uc002hlj.1_Intron|CCL4L2_uc002hli.1_RNA|CCL4L2_uc010cuk.1_RNA	NM_207007	NP_996890	Q8NHW4	CC4L_HUMAN	chemokine (C-C motif) ligand 4-like 2 precursor	66					chemotaxis|immune response|inflammatory response	extracellular space	chemokine activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTACGGATTCCAAACCAAAAG	0.388													16	17					0	0	0.006122	0	0
MLLT6	4302	broad.mit.edu	37	17	36878937	36878937	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:36878937A>G	uc002hqi.3	+	18	2812	c.2799A>G	c.(2797-2799)ACA>ACG	p.T933T	MLLT6_uc002hqk.3_Silent_p.T264T	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	933					regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					TCAGCCTTACAGAGCAGCAGA	0.637			T	MLL	AL								4	20					0	0	0.009096	0	0
PLXDC1	57125	broad.mit.edu	37	17	37243946	37243946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:37243946C>T	uc002hrg.2	-	8	1033	c.821G>A	c.(820-822)CGA>CAA	p.R274Q	uc002hrf.1_Intron|PLXDC1_uc010cvr.1_5'UTR|PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	274	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						GATGCTCCTTCGCCGAGATTC	0.572													11	22					0	0	0.000978	0	0
KRTAP4-2	85291	broad.mit.edu	37	17	39334064	39334064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:39334064G>A	uc002hwd.2	-	1	397	c.353C>T	c.(352-354)CCC>CTC	p.P118L		NM_033062	NP_149051	Q9BYR5	KRA42_HUMAN	keratin associated protein 4-2	118	20 X 5 AA repeats OF C-C-[GRQVS]-[SPT]- [VSTQ].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			ACAGCAGCTGGGGCGGTAGCA	0.612													63	60					0	0	0.003610	0	0
KRT17	3872	broad.mit.edu	37	17	39776926	39776926	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:39776926T>A	uc002hxh.2	-	6	1287	c.1166A>T	c.(1165-1167)GAG>GTG	p.E389V	JUP_uc010wfs.1_Intron	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	389	Coil 2.|Rod.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				ATCCTCTCCCTCCAGCAGGCG	0.607									Steatocystoma_Multiplex				10	39					0	0	0.000978	0	0
KRT17	3872	broad.mit.edu	37	17	39776928	39776928	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:39776928C>T	uc002hxh.2	-	6	1285	c.1164G>A	c.(1162-1164)CTG>CTA	p.L388L	JUP_uc010wfs.1_Intron	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	388	Coil 2.|Rod.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				CCTCTCCCTCCAGCAGGCGGC	0.612									Steatocystoma_Multiplex				11	39					0	0	0.001368	0	0
TUBG1	7283	broad.mit.edu	37	17	40766579	40766579	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:40766579C>T	uc002ian.2	+	10	1460	c.1062C>T	c.(1060-1062)GCC>GCT	p.A354A		NM_001070	NP_001061	P23258	TBG1_HUMAN	tubulin, gamma 1	354					G2/M transition of mitotic cell cycle|meiotic spindle organization|protein polymerization	condensed nuclear chromosome|cytosol|gamma-tubulin complex|polar microtubule	GTP binding|GTPase activity|protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.129)		GGGGCCCCGCCAGCATCCAGG	0.647													24	35					0	0	0.008361	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40837285	40837285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:40837285C>T	uc002iay.2	+	5	778	c.562C>T	c.(562-564)CCG>TCG	p.P188S	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	188	Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		CTACCGCTTCCCGCGAGGGGT	0.647													10	61					0	0	0.008291	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40839962	40839962	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:40839962C>T	uc002iay.2	+	8	1485	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	423	Laminin G-like 2.|Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		ACGTGTCCATCGCGCAGAGCG	0.617													23	83					0	0	0.003954	0	0
AOC3	8639	broad.mit.edu	37	17	41006581	41006581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:41006581G>A	uc002ibv.2	+	2	1877	c.1717G>A	c.(1717-1719)GAG>AAG	p.E573K		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	573	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	GGAGATGGAGGAGCAGGCCGC	0.657													22	27					0	0	0.001882	0	0
CD300LG	146894	broad.mit.edu	37	17	41939181	41939181	+	Missense_Mutation	SNP	G	A	A	rs147587037		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:41939181G>A	uc002iem.2	+	7	942	c.901G>A	c.(901-903)GAA>AAA	p.E301K		NM_145273	NP_660316	Q6UXG3	CLM9_HUMAN	CD300 molecule-like family member g precursor	301	Cytoplasmic (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|multivesicular body membrane	receptor activity				0		Breast(137;0.0199)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GGAGGAAAAGGAAGCCCCTTC	0.602													19	15					0	0	0.001882	0	0
SLC4A1	6521	broad.mit.edu	37	17	42327849	42327849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:42327849C>T	uc002igf.3	-	20	2862	c.2713G>A	c.(2713-2715)GAC>AAC	p.D905N		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	905	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GCCACTTCGTCGTATTCATCC	0.597													10	34					0	0	0.001368	0	0
ADAM11	4185	broad.mit.edu	37	17	42848992	42848992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:42848992G>A	uc002ihh.2	+	5	422	c.422G>A	c.(421-423)GGG>GAG	p.G141E	ADAM11_uc010wjd.1_5'UTR	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	141					integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				AAGCTCCGGGGGAACCCGCAC	0.687													27	84					0	0	0.002096	0	0
NMT1	4836	broad.mit.edu	37	17	43182242	43182242	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:43182242T>C	uc002ihz.2	+	11	1366	c.1348T>C	c.(1348-1350)TTC>CTC	p.F450L	NMT1_uc002iia.2_RNA	NM_021079	NP_066565	P30419	NMT1_HUMAN	N-myristoyltransferase 1	450					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals|N-terminal protein myristoylation|protein lipoylation	actin cytoskeleton|cell junction|cytosol	glycylpeptide N-tetradecanoyltransferase activity				0		Prostate(33;0.155)				GTTTGATGTGTTCAATGCACT	0.483													21	31					0	0	0.001882	0	0
PLCD3	113026	broad.mit.edu	37	17	43196366	43196366	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:43196366G>A	uc002iib.2	-	5	843	c.729C>T	c.(727-729)ATC>ATT	p.I243I		NM_133373	NP_588614	Q8N3E9	PLCD3_HUMAN	phospholipase C delta 3	243	EF-hand 2.				intracellular signal transduction|lipid catabolic process	cleavage furrow|cytoplasm|membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			breast(2)|lung(1)	3					Phosphatidylserine(DB00144)	GGAACTCCTCGATCTCAGCCC	0.642													5	7					0	0	0.001168	0	0
IMP5	162540	broad.mit.edu	37	17	43922422	43922422	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:43922422C>T	uc010wka.1	+	1	150	c.150C>T	c.(148-150)CCC>CCT	p.P50P	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	50	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		TCACCCTCCCCCGGGACCTGC	0.662													27	36					0	0	0.006320	0	0
MAPT	4137	broad.mit.edu	37	17	44060998	44060998	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:44060998C>T	uc002ijr.3	+	6	1148	c.828C>T	c.(826-828)TCC>TCT	p.S276S	MAPT_uc010dau.2_Silent_p.S276S|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	276					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				CCAAAGTTTCCACAGAGATCC	0.642													6	55					0	0	0.006214	0	0
SKAP1	8631	broad.mit.edu	37	17	46423357	46423357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:46423357C>T	uc002ini.1	-	4	302	c.190G>A	c.(190-192)GGA>AGA	p.G64R	SKAP1_uc002inj.1_Missense_Mutation_p.G64R|SKAP1_uc010dbd.1_5'UTR|SKAP1_uc010dbe.1_Missense_Mutation_p.G64R	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	64					positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						CTGTCCTGTCCAATGTCTCCC	0.428													9	17					0	0	0.008291	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47115627	47115627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:47115627C>T	uc002iom.2	+	6	833	c.499C>T	c.(499-501)CGC>TGC	p.R167C	IGF2BP1_uc010dbj.2_Intron	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	167					CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						TGAGAATGGGCGCCGAGGGGG	0.637													13	53					0	0	0.004007	0	0
NXPH3	11248	broad.mit.edu	37	17	47656122	47656122	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:47656122G>A	uc002ipa.2	+	2	503	c.219G>A	c.(217-219)GGG>GGA	p.G73G	NXPH3_uc010wlw.1_Silent_p.G73G	NM_007225	NP_009156	O95157	NXPH3_HUMAN	neurexophilin 3 precursor	73	II.				neuropeptide signaling pathway	extracellular region				pancreas(1)|skin(1)	2	all_cancers(4;7.45e-14)|Breast(4;1.08e-27)|all_epithelial(4;2.27e-17)					CCCCGCCTGGGGAGGCTTGGG	0.672													32	47					0	0	0.006230	0	0
CA10	56934	broad.mit.edu	37	17	49825153	49825153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:49825153C>T	uc002itw.3	-	4	1291	c.305G>A	c.(304-306)GGA>GAA	p.G102E	CA10_uc002itu.3_Missense_Mutation_p.G31E|CA10_uc002itv.3_Missense_Mutation_p.G108E|CA10_uc002itx.3_Missense_Mutation_p.G102E|CA10_uc002ity.3_Missense_Mutation_p.G102E|CA10_uc002itz.2_Missense_Mutation_p.G102E	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	102					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			TACGTGTCTTCCAGTGTTGTA	0.542													14	50					0	0	0.004990	0	0
MSI2	124540	broad.mit.edu	37	17	55478817	55478817	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:55478817C>T	uc002iuz.1	+	6	563	c.390C>T	c.(388-390)TTC>TTT	p.F130F	MSI2_uc010wnm.1_Silent_p.F108F|MSI2_uc002iva.2_Silent_p.F126F	NM_138962	NP_620412	Q96DH6	MSI2H_HUMAN	musashi 2 isoform a	130	RRM 2.					cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)|pancreas(1)	2	Breast(9;1.78e-08)			GBM - Glioblastoma multiforme(1;0.0025)		AGCAATATTTCGAGCAGTTTG	0.488			T	HOXA9	CML								30	45					0	0	0.002836	0	0
MRPS23	51649	broad.mit.edu	37	17	55917233	55917233	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:55917233A>G	uc002ivc.2	-	5	512	c.484T>C	c.(484-486)TTG>CTG	p.L162L		NM_016070	NP_057154	Q9Y3D9	RT23_HUMAN	mitochondrial ribosomal protein S23	162					translation	intermediate filament cytoskeleton|mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome				0	Breast(9;8.75e-08)					TTTTCTTCCAACGCAGTCTGT	0.478													29	41					0	0	0.009535	0	0
OR4D2	124538	broad.mit.edu	37	17	56247560	56247560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:56247560C>T	uc010wnp.1	+	1	544	c.544C>T	c.(544-546)CCC>TCC	p.P182S		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CTGTGATGTTCCCCAAGTACT	0.537													33	108					0	0	0.003271	0	0
NACA2	342538	broad.mit.edu	37	17	59668312	59668312	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:59668312C>T	uc002izj.2	-	1	256	c.230G>A	c.(229-231)CGG>CAG	p.R77Q		NM_199290	NP_954984	Q9H009	NACA2_HUMAN	nascent-polypeptide-associated complex alpha	77	NAC-A/B.				protein transport	cytoplasm|nucleus		p.R77W(1)		ovary(1)	1	all_epithelial(1;3.12e-14)					CATAGCCTTCCGTGCCCTCTT	0.463													78	94					0	0	0.003610	0	0
INTS2	57508	broad.mit.edu	37	17	59945003	59945003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:59945003C>T	uc002izn.2	-	25	3606	c.3530G>A	c.(3529-3531)GGA>GAA	p.G1177E	INTS2_uc002izm.2_Missense_Mutation_p.G1169E	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	1177					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						ATCCATGCTTCCAGTGTCCCT	0.333													15	46					0	0	0.003163	0	0
ACE	1636	broad.mit.edu	37	17	61558997	61558997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:61558997C>T	uc002jau.1	+	7	1038	c.1016C>T	c.(1015-1017)CCT>CTT	p.P339L	ACE_uc010wpi.1_Missense_Mutation_p.P339L|ACE_uc010ddu.1_Missense_Mutation_p.P156L	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	339	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TCCCCCATGCCTCCCGAGTTC	0.642													13	44					0	0	0.001855	0	0
KCNH6	81033	broad.mit.edu	37	17	61620959	61620959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:61620959C>T	uc002jay.2	+	10	2251	c.2171C>T	c.(2170-2172)TCC>TTC	p.S724F	KCNH6_uc010wpl.1_Missense_Mutation_p.S601F|KCNH6_uc010wpm.1_Missense_Mutation_p.S724F|KCNH6_uc002jaz.1_Missense_Mutation_p.S671F	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	724	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	CTCCACTCATCCCCCCGACAG	0.597													18	88					0	0	0.007413	0	0
CACNG5	27091	broad.mit.edu	37	17	64875095	64875095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:64875095G>A	uc010wqi.1	+	3	439	c.202G>A	c.(202-204)GAG>AAG	p.E68K	CACNG5_uc002jfr.2_Missense_Mutation_p.E68K|CACNG5_uc010wqj.1_Missense_Mutation_p.E68K	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	68					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			CACAGGTGAGGAGCGGGGGCG	0.468													20	50					0	0	0.002299	0	0
ABCA9	10350	broad.mit.edu	37	17	67016591	67016591	+	Silent	SNP	G	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:67016591G>C	uc002jhu.2	-	19	2681	c.2538C>G	c.(2536-2538)GTC>GTG	p.V846V	ABCA9_uc010dez.2_Silent_p.V846V	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	846					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					CTATTGCACAGACCTGCTGCC	0.423													38	34					0	0	0.002522	0	0
ABCA6	23460	broad.mit.edu	37	17	67106984	67106984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:67106984G>A	uc002jhw.1	-	17	2405	c.2230C>T	c.(2230-2232)CTT>TTT	p.L744F	ABCA6_uc002jhx.1_Missense_Mutation_p.L197F	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	744					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GTATATACAAGCTTTTCTTTG	0.303													4	19					0	0	0.009096	0	0
TTYH2	94015	broad.mit.edu	37	17	72248397	72248397	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:72248397A>T	uc002jkc.2	+	11	1172	c.1141A>T	c.(1141-1143)ATC>TTC	p.I381F	TTYH2_uc010wqw.1_Missense_Mutation_p.I360F|TTYH2_uc002jkd.2_Missense_Mutation_p.I60F	NM_032646	NP_116035	Q9BSA4	TTYH2_HUMAN	tweety 2 isoform 1	381	Extracellular (Potential).					chloride channel complex|plasma membrane	chloride channel activity|protein binding			ovary(3)|large_intestine(1)	4						TCTTGCTGGCATCTGCTACGA	0.622													43	48					0	0	0.003214	0	0
KIF19	124602	broad.mit.edu	37	17	72338108	72338108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:72338108G>A	uc002jkm.3	+	3	352	c.214G>A	c.(214-216)GAC>AAC	p.D72N	KIF19_uc002jkj.2_Missense_Mutation_p.D72N|KIF19_uc002jkk.2_Missense_Mutation_p.D72N|KIF19_uc002jkl.2_Missense_Mutation_p.D72N	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	72	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CGTGGCCTTTGACTTCACCGC	0.662													33	134					0	0	0.002836	0	0
FDXR	2232	broad.mit.edu	37	17	72860067	72860067	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:72860067G>A	uc002jly.2	-	10	1212	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S	FDXR_uc010wri.1_Silent_p.S323S|FDXR_uc010wrj.1_Silent_p.S373S|FDXR_uc002jlw.2_Silent_p.S132S|FDXR_uc002jlx.2_Silent_p.S381S|FDXR_uc002jmc.2_Silent_p.S347S|FDXR_uc010wrk.1_Silent_p.S406S|FDXR_uc010wrl.1_Silent_p.S418S|FDXR_uc002jma.2_Silent_p.S376S|FDXR_uc010wrm.1_Silent_p.S335S|FDXR_uc002jlz.2_Silent_p.S367S|FDXR_uc002jmb.2_Intron	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	375					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					CCCCAAGCTTGGAGTCAAAGG	0.597													25	93					0	0	0.004656	0	0
FDXR	2232	broad.mit.edu	37	17	72862359	72862360	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:72862359_72862360CC>TT	uc002jly.2	-	5	487_488	c.400_401GG>AA	c.(400-402)GGG>AAG	p.G134K	FDXR_uc010wri.1_Missense_Mutation_p.G82K|FDXR_uc010wrj.1_Missense_Mutation_p.G132K|FDXR_uc002jlw.2_5'UTR|FDXR_uc002jlx.2_Missense_Mutation_p.G134K|FDXR_uc002jmc.2_Missense_Mutation_p.G135K|FDXR_uc010wrk.1_Missense_Mutation_p.G165K|FDXR_uc010wrl.1_Missense_Mutation_p.G177K|FDXR_uc002jma.2_Missense_Mutation_p.G135K|FDXR_uc010wrm.1_Missense_Mutation_p.G94K|FDXR_uc002jlz.2_Missense_Mutation_p.G126K|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	134					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					GTCCTCTGCCCCGTAGCTCTGA	0.658													17	29					0	0	0.004672	0	0
EVPL	2125	broad.mit.edu	37	17	74005349	74005349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:74005349C>T	uc002jqi.2	-	22	4165	c.3937G>A	c.(3937-3939)GTG>ATG	p.V1313M	EVPL_uc010wss.1_Missense_Mutation_p.V1335M|EVPL_uc010wst.1_Missense_Mutation_p.V783M	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1313	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCCTTGCTCACCGTCTTGGTC	0.697													72	117					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	17	76497432	76497432	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:76497432G>A	uc002jvt.1	+	2		c.2891G>A								Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		TCCACCTGCAGGATGAGCCGG	0.617													20	22					0	0	0.002299	0	0
DNAH17	8632	broad.mit.edu	37	17	76540046	76540046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:76540046C>T	uc002jvv.1	-	13	1637	c.1531G>A	c.(1531-1533)GAC>AAC	p.D511N						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TTCTTATTGTCCTTTCTTTCA	0.502													55	54					0	0	0.003610	0	0
CANT1	124583	broad.mit.edu	37	17	76993521	76993521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:76993521G>A	uc002jwn.2	-	4	623	c.184C>T	c.(184-186)CAC>TAC	p.H62Y	CANT1_uc002jwk.2_Missense_Mutation_p.H62Y|CANT1_uc002jwj.2_Missense_Mutation_p.H62Y|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	62	Helical; Signal-anchor for type II membrane protein; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			GCCGGGCGGTGGGAGCAGAGC	0.687			T	ETV4	prostate								30	21					0	0	0.007291	0	0
STRA13	201254	broad.mit.edu	37	17	79980701	79980702	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr17:79980701_79980702CC>TT	uc002kdc.2	-	1	72	c.36_splice	c.e1+1	p.K12_splice	STRA13_uc002kdd.2_Splice_Site|LRRC45_uc002kde.2_5'Flank	NM_144998	NP_659435	A8MT69	CENPX_HUMAN	stimulated by retinoic acid 13						DNA repair	chromosome, centromeric region|Fanconi anaemia nuclear complex	DNA binding|protein binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CCGGCCCTCACCTTCCGGAAGC	0.733													5	3					0	0	0.004672	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6311588	6311589	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:6311588_6311589CC>TT	uc002kmz.3	-	3	196_197	c.36_37GG>AA	c.(34-39)ATGGAT>ATAAAT	p.12_13MD>IN	L3MBTL4_uc010dkt.2_Missense_Mutation_p.12_13MD>IN	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	12_13					chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				TCTTTGGAATCCATATTAAGCT	0.485													40	138					0	0	0.004672	0	0
LAMA1	284217	broad.mit.edu	37	18	6948508	6948508	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:6948508G>A	uc002knm.2	-	60	8698	c.8604C>T	c.(8602-8604)AGC>AGT	p.S2868S	LAMA1_uc002knk.2_Silent_p.S198S|LAMA1_uc002knl.2_Silent_p.S321S|LAMA1_uc010wzj.1_Silent_p.S2344S	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2868	Laminin G-like 4.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCAGCTGTTTGCTGTTAACCG	0.527													15	20					0	0	0.002450	0	0
LAMA1	284217	broad.mit.edu	37	18	6975027	6975027	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:6975027G>A	uc002knm.2	-	46	6592	c.6498C>T	c.(6496-6498)TTC>TTT	p.F2166F	LAMA1_uc010wzj.1_Silent_p.F1642F	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2166	Laminin G-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCACTGCAAGGAAATCAGACT	0.537													7	9					0	0	0.003080	0	0
LAMA1	284217	broad.mit.edu	37	18	7024446	7024447	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:7024446_7024447GG>AA	uc002knm.2	-	18	2515_2516	c.2421_2422CC>TT	c.(2419-2424)CACCTC>CATTTC	p.L808F	LAMA1_uc010wzj.1_Missense_Mutation_p.L284F	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	808	Laminin EGF-like 7.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCATCATTGAGGTGGCAGGTGG	0.436													4	17					0	0	0.004672	0	0
RALBP1	10928	broad.mit.edu	37	18	9533365	9533365	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:9533365C>T	uc002kob.2	+	8	1711	c.1488C>T	c.(1486-1488)CTC>CTT	p.L496L	RALBP1_uc002koc.2_Silent_p.L496L	NM_006788	NP_006779	Q15311	RBP1_HUMAN	ralA binding protein 1	496	Interacts with RalA.				chemotaxis|positive regulation of Cdc42 GTPase activity|small GTPase mediated signal transduction|transport	cytosol|membrane	ATPase activity, coupled to movement of substances|Rac GTPase activator activity|Rac GTPase binding|Ral GTPase binding			central_nervous_system(1)	1						AGGAGGAGCTCCTGGCCATGG	0.468													19	28					0	0	0.008871	0	0
FAM38B	63895	broad.mit.edu	37	18	10675266	10675266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:10675266G>A	uc002kor.3	-	12	1773	c.1633C>T	c.(1633-1635)CCA>TCA	p.P545S	FAM38B_uc002koq.2_Missense_Mutation_p.P380S	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2588						integral to membrane	ion channel activity			ovary(1)	1						ACATAATATGGATAAATCTTT	0.274													22	40					0	0	0.003330	0	0
DSC2	1824	broad.mit.edu	37	18	28659870	28659870	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:28659870C>A	uc002kwl.3	-	11	2060	c.1606G>T	c.(1606-1608)GAG>TAG	p.E536*	DSC2_uc002kwk.3_Nonsense_Mutation_p.E536*	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	536	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GTCTCTGCCTCTCTATCCAGG	0.388													24	45					2.89027e-11	2.95454e-11	0.002299	1	0
DSC2	1824	broad.mit.edu	37	18	28671022	28671022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:28671022G>A	uc002kwl.3	-	4	897	c.443C>T	c.(442-444)TCC>TTC	p.S148F	DSC2_uc002kwk.3_Missense_Mutation_p.S148F	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	148	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			AGGACCCAAGGAGTTTTCTAG	0.403													4	15					0	0	0.000602	0	0
DSG4	147409	broad.mit.edu	37	18	28970666	28970666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:28970666C>T	uc002kwq.2	+	6	700	c.565C>T	c.(565-567)CAT>TAT	p.H189Y	DSG4_uc002kwr.2_Missense_Mutation_p.H189Y	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	189	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGAAGAAAATCATCTGAATTC	0.408													14	22					0	0	0.001855	0	0
DSG3	1830	broad.mit.edu	37	18	29036436	29036436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:29036436G>A	uc002kws.2	+	2	191	c.82G>A	c.(82-84)GAG>AAG	p.E28K		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	28					cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ATTGCGAATAGAGGTAAAGTA	0.189													6	24					0	0	0.001168	0	0
MCART2	147407	broad.mit.edu	37	18	29340052	29340052	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:29340052G>A	uc002kxa.2	-	1	792	c.573C>T	c.(571-573)TTC>TTT	p.F191F		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	191	Helical; Name=4; (Potential).|Solcar 2.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			CTCGAAGGCCGAAAAACAAGA	0.473													15	40					0	0	0.008871	0	0
ASXL3	80816	broad.mit.edu	37	18	31323549	31323549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:31323549C>T	uc010dmg.1	+	12	3792	c.3737C>T	c.(3736-3738)TCG>TTG	p.S1246L	ASXL3_uc002kxq.2_Missense_Mutation_p.S953L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1246	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ACTGCTATATCGGGAGCAATT	0.368													8	35					0	0	0.004482	0	0
ASXL3	80816	broad.mit.edu	37	18	31323829	31323829	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:31323829C>T	uc010dmg.1	+	12	4072	c.4017C>T	c.(4015-4017)ACC>ACT	p.T1339T	ASXL3_uc002kxq.2_Silent_p.T1046T	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1339	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CTCAGTACACCTCTGTGCCAA	0.463											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	115					0	0	0.008740	0	0
SETBP1	26040	broad.mit.edu	37	18	42532839	42532839	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:42532839C>T	uc010dni.2	+	4	3830	c.3534C>T	c.(3532-3534)GCC>GCT	p.A1178A		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1178						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CAGGCAAAGCCACAGGCTTCT	0.527									Schinzel-Giedion_syndrome				24	39					0	0	0.004656	0	0
MAPK4	5596	broad.mit.edu	37	18	48190536	48190536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:48190536C>T	uc002lev.2	+	2	1208	c.208C>T	c.(208-210)CGG>TGG	p.R70W	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Missense_Mutation_p.R70W	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	70	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CAAGATCATTCGGCGCCTGGA	0.607													21	32					0	0	0.002780	0	0
MRO	83876	broad.mit.edu	37	18	48326495	48326495	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:48326495G>A	uc002lew.3	-	7	898	c.604C>T	c.(604-606)CAA>TAA	p.Q202*	MRO_uc010xdn.1_Nonsense_Mutation_p.Q150*|MRO_uc010dpa.2_Nonsense_Mutation_p.Q216*|MRO_uc010dpb.2_Nonsense_Mutation_p.Q164*|MRO_uc010dpc.2_Nonsense_Mutation_p.Q150*|MRO_uc002lex.3_Nonsense_Mutation_p.Q202*	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	202						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		GAACAGGCTTGAAATGTTGTT	0.388													17	33					0	0	0.004007	0	0
DCC	1630	broad.mit.edu	37	18	50976915	50976915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:50976915C>T	uc002lfe.1	+	23	3862	c.3275C>T	c.(3274-3276)CCT>CTT	p.P1092L	DCC_uc010dpf.1_Missense_Mutation_p.P727L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1092	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGTGTCACTCCTCAGAAGAAC	0.512													13	36					0	0	0.001368	0	0
NEDD4L	23327	broad.mit.edu	37	18	55992285	55992285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:55992285C>T	uc002lgy.2	+	9	845	c.571C>T	c.(571-573)CCT>TCT	p.P191S	NEDD4L_uc002lgz.2_Missense_Mutation_p.P191S|NEDD4L_uc002lgx.2_Missense_Mutation_p.P191S|NEDD4L_uc010xee.1_Missense_Mutation_p.P70S|NEDD4L_uc002lhc.2_Missense_Mutation_p.P183S|NEDD4L_uc002lhd.2_Missense_Mutation_p.P70S|NEDD4L_uc002lhb.2_Missense_Mutation_p.P70S|NEDD4L_uc002lhe.2_Missense_Mutation_p.P183S|NEDD4L_uc002lhf.2_Missense_Mutation_p.P70S|NEDD4L_uc002lhg.2_Missense_Mutation_p.P70S|NEDD4L_uc002lhh.2_Missense_Mutation_p.P70S|NEDD4L_uc010dpm.1_Missense_Mutation_p.P42S	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	191					cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						AGAGGAACTTCCTCCTCCTCC	0.498													37	100					0	0	0.006999	0	0
CDH20	28316	broad.mit.edu	37	18	59221606	59221606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:59221606C>T	uc010dps.1	+	11	2096	c.2084C>T	c.(2083-2085)CCC>CTC	p.P695L	CDH20_uc002lif.2_Missense_Mutation_p.P689L	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	695	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				GGGGCCGCCCCCAAGACGCGG	0.697													9	37					0	0	0.006214	0	0
SERPINB11	89778	broad.mit.edu	37	18	61377503	61377503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:61377503G>A	uc002ljk.3	+	2	138	c.76G>A	c.(76-78)GAT>AAT	p.D26N	SERPINB11_uc010xes.1_5'UTR|SERPINB11_uc010dqd.2_5'UTR|SERPINB11_uc002ljj.3_5'UTR|SERPINB11_uc010dqe.2_5'UTR|SERPINB11_uc010dqf.2_Missense_Mutation_p.D26N	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	26					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				CAACATAGGAGATAACATCTT	0.448													6	18					0	0	0.001984	0	0
CDH7	1005	broad.mit.edu	37	18	63477088	63477088	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:63477088T>C	uc002ljz.2	+	3	684	c.359T>C	c.(358-360)CTC>CCC	p.L120P	CDH7_uc002lka.2_Missense_Mutation_p.L120P|CDH7_uc002lkb.2_Missense_Mutation_p.L120P	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	120	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				TACTACACGCTCCGAGCTCAA	0.493													12	37					0	0	0.001368	0	0
CDH7	1005	broad.mit.edu	37	18	63477090	63477090	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:63477090C>T	uc002ljz.2	+	3	686	c.361C>T	c.(361-363)CGA>TGA	p.R121*	CDH7_uc002lka.2_Nonsense_Mutation_p.R121*|CDH7_uc002lkb.2_Nonsense_Mutation_p.R121*	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	121	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CTACACGCTCCGAGCTCAAGC	0.488													12	38					0	0	0.001368	0	0
TSHZ1	10194	broad.mit.edu	37	18	72997681	72997681	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:72997681T>A	uc002lly.2	+	2	747	c.184T>A	c.(184-186)TCG>ACG	p.S62T		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	107	Ser-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		CGACAGCGTCTCGTACCCCCA	0.557													12	19					0	0	0.000978	0	0
GALR1	2587	broad.mit.edu	37	18	74980684	74980684	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:74980684G>A	uc002lms.3	+	3	1373	c.876G>A	c.(874-876)GCG>GCA	p.A292A		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	292	Helical; Name=7; (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		ACTGCCTGGCGTACAGCAATT	0.493													22	38					0	0	0.001882	0	0
ATP9B	374868	broad.mit.edu	37	18	77108142	77108142	+	Missense_Mutation	SNP	C	T	T	rs141754612		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr18:77108142C>T	uc002lmx.2	+	25	2863	c.2849C>T	c.(2848-2850)TCC>TTC	p.S950F	ATP9B_uc002lmw.1_Missense_Mutation_p.S950F|ATP9B_uc002lmz.1_Missense_Mutation_p.S644F|ATP9B_uc002lna.2_Intron|ATP9B_uc002lnb.1_Intron|ATP9B_uc010drb.2_RNA	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	950	Helical; (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		GCTGTGTTTTCCTCAGTCTTC	0.557													23	58					0	0	0.003954	0	0
MATK	4145	broad.mit.edu	37	19	3778521	3778521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:3778521G>A	uc002lyt.2	-	13	1670	c.1270C>T	c.(1270-1272)CCG>TCG	p.P424S	MATK_uc002lyv.2_Missense_Mutation_p.P425S|MATK_uc002lyu.2_Missense_Mutation_p.P383S|MATK_uc010dtq.2_Missense_Mutation_p.P423S	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	424	Protein kinase.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		TTAGGGTACGGAGCCCGTCCA	0.647													7	9					0	0	0.001984	0	0
MIR7-3	407045	broad.mit.edu	37	19	4770784	4770784	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:4770784C>T	hsa-mir-7-3|MI0000265	+			c.103C>T			C19orf30_uc002mbd.2_Intron|C19orf30_uc002mbe.2_Intron|C19orf30_uc010xii.1_Intron|uc010xij.1_RNA																	0						GCGCAGACTCCCTTCGACCTT	0.572													21	38					0	0	0.008871	0	0
CD70	970	broad.mit.edu	37	19	6590921	6590921	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:6590921C>T	uc002mfi.2	-	1	243	c.93G>A	c.(91-93)GTG>GTA	p.V31V	CD70_uc010xjf.1_Silent_p.V31V	NM_001252	NP_001243	P32970	CD70_HUMAN	tumor necrosis factor ligand superfamily, member	31	Helical; Signal-anchor for type II membrane protein; (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to membrane of membrane fraction|integral to plasma membrane	cytokine activity|protease binding|tumor necrosis factor receptor binding				0						CGAGGCAGATCACCAAGCCCG	0.642													32	51					0	0	0.002836	0	0
TNFSF14	8740	broad.mit.edu	37	19	6665272	6665272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:6665272C>T	uc002mfk.1	-	5	770	c.388G>A	c.(388-390)GAT>AAT	p.D130N	TNFSF14_uc002mfj.1_Missense_Mutation_p.D94N	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	130	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						AGGGCCCCATCGTGGTAGCTG	0.652													11	23					0	0	0.008291	0	0
TNFSF14	8740	broad.mit.edu	37	19	6665287	6665287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:6665287C>T	uc002mfk.1	-	5	755	c.373G>A	c.(373-375)GGC>AGC	p.G125S	TNFSF14_uc002mfj.1_Missense_Mutation_p.G89S	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	125	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						TAGCTGAGGCCCCTCAGGAAG	0.642													8	18					0	0	0.003080	0	0
PRAM1	84106	broad.mit.edu	37	19	8563972	8563972	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:8563972G>A	uc002mkd.2	-	2	740	c.720C>T	c.(718-720)TCC>TCT	p.S240S	PRAM1_uc002mkc.2_Silent_p.S240S	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	288	Pro-rich.						lipid binding|protein binding				0						GCTGCGGCACGGACTTCTTAG	0.612													12	39					0	0	0.000978	0	0
MUC16	94025	broad.mit.edu	37	19	9005617	9005617	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9005617G>A	uc002mkp.2	-	46	39993	c.39789C>T	c.(39787-39789)ACC>ACT	p.T13263T	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.T80T|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13265	SEA 8.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGATGCTGTGGGTCAGCTGGC	0.562													34	84					0	0	0.003755	0	0
MUC16	94025	broad.mit.edu	37	19	9012794	9012794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9012794C>T	uc002mkp.2	-	34	38854	c.38650G>A	c.(38650-38652)GAG>AAG	p.E12884K	MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12886	SEA 6.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGACCCGCTCCGTGGTGTTG	0.587													26	68					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9061224	9061224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9061224G>A	uc002mkp.2	-	3	26426	c.26222C>T	c.(26221-26223)TCC>TTC	p.S8741F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8743	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTGTTCTGGAGACCTTAGT	0.483													9	26					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9063963	9063963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9063963G>A	uc002mkp.2	-	3	23687	c.23483C>T	c.(23482-23484)TCC>TTC	p.S7828F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7830	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGGGTCAGGGAGGAAGCTAG	0.542													21	49					0	0	0.001882	0	0
MUC16	94025	broad.mit.edu	37	19	9072184	9072184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9072184C>T	uc002mkp.2	-	3	15466	c.15262G>A	c.(15262-15264)GAA>AAA	p.E5088K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5090	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCACAGGTTCCAAGCGTGTA	0.423													33	89					0	0	0.004878	0	0
MUC16	94025	broad.mit.edu	37	19	9074844	9074844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9074844C>T	uc002mkp.2	-	3	12806	c.12602G>A	c.(12601-12603)GGG>GAG	p.G4201E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4203	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGGTCTTCCCCAGGCCAGA	0.502													4	25					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9086150	9086150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9086150C>T	uc002mkp.2	-	1	5869	c.5665G>A	c.(5665-5667)GGA>AGA	p.G1889R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1889	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGCTGTTTCCCATAGACAGG	0.502													11	31					0	0	0.000978	0	0
MUC16	94025	broad.mit.edu	37	19	9088781	9088781	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9088781T>C	uc002mkp.2	-	1	3238	c.3034A>G	c.(3034-3036)ACT>GCT	p.T1012A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1012	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGATAGAAGTTGCTTCCATG	0.478													41	91					0	0	0.008740	0	0
OR7G1	125962	broad.mit.edu	37	19	9225705	9225705	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9225705G>A	uc002mks.1	-	1	735	c.735C>T	c.(733-735)CTC>CTT	p.L245L		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						AAAAAACAGAGAGGTGACAGC	0.428													7	13					0	0	0.001984	0	0
OR7D2	162998	broad.mit.edu	37	19	9296555	9296555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9296555C>T	uc002mkz.1	+	1	286	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	33	Helical; Name=1; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CTGTTCCTGTCCATGTACCTG	0.507													14	21					0	0	0.003163	0	0
ZNF560	147741	broad.mit.edu	37	19	9578870	9578870	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9578870G>A	uc002mlp.1	-	10	963	c.753C>T	c.(751-753)CTC>CTT	p.L251L	ZNF560_uc010dwr.1_Silent_p.L145L	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	251					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						ATAGAGAAAGGAGGTCTTTTG	0.373													9	36					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	19	9801757	9801757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:9801757G>A	uc010xkx.1	-	3	733	c.110C>T	c.(109-111)CCA>CTA	p.P37L						RecName: Full=Zinc finger protein 562;																		TTTTCCACATGGATTAAATTT	0.398													6	19					0	0	0.004482	0	0
COL5A3	50509	broad.mit.edu	37	19	10089653	10089653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:10089653C>T	uc002mmq.1	-	40	2964	c.2878G>A	c.(2878-2880)GAA>AAA	p.E960K		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	960	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGTCCCAGTTCCCCCTACAGG	0.622													3	11					0	0	0.004672	0	0
C3P1	388503	broad.mit.edu	37	19	10158089	10158089	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:10158089C>T	uc010dwx.1	+	11		c.1532C>T				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						ATGAGCAGGTCCAGATCCAAG	0.502													27	48					0	0	0.006320	0	0
FDX1L	112812	broad.mit.edu	37	19	10421288	10421288	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:10421288G>A	uc002mny.1	-	5	445	c.426C>T	c.(424-426)CTC>CTT	p.L142L	ZGLP1_uc002mnw.3_5'Flank|FDX1L_uc002mnx.1_Intron	NM_001031734	NP_001026904	Q6P4F2	ADXL_HUMAN	ferredoxin 1-like precursor	142	2Fe-2S ferredoxin-type.				electron transport chain|transport	mitochondrial matrix	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(20;9.5e-10)|Epithelial(33;2.11e-06)|all cancers(31;5.06e-06)			TCTCCTGGAGGAGGGGGGCCA	0.632													15	39					0	0	0.004007	0	0
SMARCA4	6597	broad.mit.edu	37	19	11152215	11152215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:11152215C>T	uc002mqf.3	+	30	4687	c.4403C>T	c.(4402-4404)GCC>GTC	p.A1468V	SMARCA4_uc010dxp.2_Missense_Mutation_p.A1468V|SMARCA4_uc010dxo.2_Missense_Mutation_p.A1500V|SMARCA4_uc010dxq.2_Missense_Mutation_p.A1435V|SMARCA4_uc010dxr.2_Missense_Mutation_p.A1435V|SMARCA4_uc002mqj.3_Missense_Mutation_p.A1438V|SMARCA4_uc010dxs.2_Missense_Mutation_p.A1438V|SMARCA4_uc002mqh.3_Missense_Mutation_p.A558V	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1468					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				ATTGTGGATGCCGTGATCAAG	0.612			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				11	22					0	0	0.001855	0	0
DOCK6	57572	broad.mit.edu	37	19	11333778	11333778	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:11333778A>G	uc002mqs.3	-	25	3001	c.2960T>C	c.(2959-2961)GTG>GCG	p.V987A	DOCK6_uc010xlq.1_Missense_Mutation_p.V326A	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	987					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GGCCAGCTCCACATCCTGGGG	0.627													9	25					0	0	0.006214	0	0
ZNF799	90576	broad.mit.edu	37	19	12502345	12502346	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:12502345_12502346GG>AA	uc010dyt.2	-	4	1016_1017	c.866_867CC>TT	c.(865-867)GCC>GTT	p.A289V	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	289	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						AAGCACTGAAGGCTTTCCCACA	0.426													24	54					0	0	0.004672	0	0
CACNA1A	773	broad.mit.edu	37	19	13365981	13365981	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:13365981G>A	uc010dze.2	-	29	4922	c.4686C>T	c.(4684-4686)TTC>TTT	p.F1562F	CACNA1A_uc010xnd.1_Silent_p.F267F|CACNA1A_uc002mwx.3_Silent_p.F267F|CACNA1A_uc010dzc.2_Silent_p.F1087F|CACNA1A_uc002mwy.3_Silent_p.F1561F|CACNA1A_uc010xne.1_Silent_p.F1090F|CACNA1A_uc002mwv.3_Silent_p.F78F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1562	IV.|Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GAGACACCACGAACTGCCACA	0.552													15	24					0	0	0.004007	0	0
CACNA1A	773	broad.mit.edu	37	19	13418632	13418632	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:13418632G>A	uc010dze.2	-	15	2189	c.1953C>T	c.(1951-1953)TTC>TTT	p.F651F	CACNA1A_uc010dzc.2_Silent_p.F176F|CACNA1A_uc002mwy.3_Silent_p.F650F|CACNA1A_uc010xne.1_Silent_p.F176F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	651	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GAAAAGTATCGAAGTTGGTGG	0.557													23	54					0	0	0.003954	0	0
OR7A5	26659	broad.mit.edu	37	19	14938706	14938706	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:14938706G>A	uc002mzw.2	-	1	571	c.348C>T	c.(346-348)TCC>TCT	p.S116S	OR7A5_uc010xoa.1_Silent_p.S116S	NM_017506	NP_059976	Q15622	OR7A5_HUMAN	olfactory receptor, family 7, subfamily A,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(2)	2						AGGCCATCACGGACAGGAGGA	0.478													12	37					0	0	0.001855	0	0
SLC1A6	6511	broad.mit.edu	37	19	15067400	15067400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:15067400G>A	uc002naa.1	-	6	1065	c.1057C>T	c.(1057-1059)CAT>TAT	p.H353Y	SLC1A6_uc010dzu.1_Intron|SLC1A6_uc010xod.1_Missense_Mutation_p.H289Y	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	353	Helical; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	ATGCCGGCATGGAGGAACAGG	0.587													19	23					0	0	0.007413	0	0
AKAP8L	26993	broad.mit.edu	37	19	15511150	15511150	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:15511150C>G	uc002naw.1	-	8	1103	c.1004G>C	c.(1003-1005)GGA>GCA	p.G335A	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Missense_Mutation_p.G274A|AKAP8L_uc002nay.1_Missense_Mutation_p.G335A	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	335						cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						ATCCTCTTTTCCCTCCTCATC	0.408													12	41					0	0	0.003163	0	0
RASAL3	64926	broad.mit.edu	37	19	15574876	15574876	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:15574876C>T	uc002nbe.2	-	2	380	c.294G>A	c.(292-294)CCG>CCA	p.P98P		NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	98	Pro-rich.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						GGTCTGGCTCCGGCGGTGGGT	0.657													10	19					0	0	0.000978	0	0
OR10H1	26539	broad.mit.edu	37	19	15917966	15917966	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:15917966C>T	uc002nbq.2	-	1	971	c.882G>A	c.(880-882)AGG>AGA	p.R294R		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTCCTTGTTCCTGAGGCTGA	0.478													6	25					0	0	0.001168	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025448	16025448	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:16025448C>T	uc002nbu.2	-	11	1314	c.1278G>A	c.(1276-1278)GGG>GGA	p.G426G	CYP4F11_uc010eab.1_Intron|CYP4F11_uc002nbt.2_Silent_p.G426G	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	426					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						TGTAATGGATCCCGATAATAT	0.572													28	41					0	0	0.009535	0	0
CIB3	117286	broad.mit.edu	37	19	16275555	16275555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:16275555C>T	uc002nds.2	-	5	516	c.516G>A	c.(514-516)ATG>ATA	p.M172I	CIB3_uc010eae.2_Missense_Mutation_p.M111I|CIB3_uc010eaf.2_RNA|CIB3_uc010eag.2_Missense_Mutation_p.M123I	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	172	EF-hand 3.						calcium ion binding	p.M172I(1)		ovary(1)	1						CCCGGAGGATCATGTTCTGGA	0.572													13	27					0	0	0.003163	0	0
NWD1	284434	broad.mit.edu	37	19	16860477	16860478	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:16860477_16860478CC>TT	uc002neu.3	+	6	1446_1447	c.1024_1025CC>TT	c.(1024-1026)CCC>TTC	p.P342F	NWD1_uc002net.3_Missense_Mutation_p.P207F|NWD1_uc002nev.3_Missense_Mutation_p.P136F			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	342	ATP (Potential).|NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						ACTCTTTGGGCCCCCAGGCATT	0.634													10	24					0	0	0.004672	0	0
NWD1	284434	broad.mit.edu	37	19	16860798	16860798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:16860798C>T	uc002neu.3	+	6	1767	c.1345C>T	c.(1345-1347)CGG>TGG	p.R449W	NWD1_uc002net.3_Missense_Mutation_p.R314W|NWD1_uc002nev.3_Missense_Mutation_p.R243W			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	449	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CCGCCATGCTCGGAGGGTTCC	0.597													20	63					0	0	0.002299	0	0
NWD1	284434	broad.mit.edu	37	19	16902315	16902315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:16902315G>A	uc002neu.3	+	14	3517	c.3095G>A	c.(3094-3096)GGA>GAA	p.G1032E	NWD1_uc002net.3_Missense_Mutation_p.G897E|NWD1_uc002nev.3_Missense_Mutation_p.G826E			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1032	WD 5.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TCAGCTACGGGAAAACTTCAG	0.547													12	25					0	0	0.000978	0	0
CPAMD8	27151	broad.mit.edu	37	19	17013605	17013605	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:17013605C>T	uc002nfb.2	-	35	4712	c.4680G>A	c.(4678-4680)CAG>CAA	p.Q1560Q	CPAMD8_uc002nfd.1_Silent_p.Q25Q	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1513						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCTCAGGCTCCTGGAGGCTTA	0.657													37	70					0	0	0.006230	0	0
SLC27A1	376497	broad.mit.edu	37	19	17598335	17598335	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:17598335G>T	uc002ngu.1	+	4	841	c.791G>T	c.(790-792)AGC>ATC	p.S264I	SLC27A1_uc002ngt.1_5'UTR|SLC27A1_uc010xpp.1_Missense_Mutation_p.S85I	NM_198580	NP_940982	Q6PCB7	S27A1_HUMAN	solute carrier family 27, member 1	264	Sufficient for oligomerization (By similarity).|Cytoplasmic (Potential).				cardiolipin biosynthetic process|fatty acid metabolic process|long-chain fatty acid transport|negative regulation of phospholipid biosynthetic process|phosphatidic acid biosynthetic process|phosphatidylcholine biosynthetic process|phosphatidylethanolamine biosynthetic process|phosphatidylinositol biosynthetic process|phosphatidylserine biosynthetic process|transmembrane transport	endomembrane system|integral to membrane	fatty acid transporter activity|nucleotide binding				0						GTCGTGCACAGCAGGTGAGGG	0.612													5	12					3.59834e-05	3.65618e-05	0.001168	1	0
IL12RB1	3594	broad.mit.edu	37	19	18191674	18191674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:18191674G>A	uc002nhw.1	-	4	441	c.377C>T	c.(376-378)TCT>TTT	p.S126F	IL12RB1_uc010xqb.1_Missense_Mutation_p.S126F|IL12RB1_uc002nhx.1_Missense_Mutation_p.S166F|IL12RB1_uc002nhy.2_Missense_Mutation_p.S126F	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	126	Extracellular (Potential).|Fibronectin type-III 1.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CACCTCAGGAGACTTCTCTGT	0.582													11	44					0	0	0.000978	0	0
TMEM59L	25789	broad.mit.edu	37	19	18726820	18726820	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:18726820C>T	uc002njy.3	+	4	531	c.444C>T	c.(442-444)TCC>TCT	p.S148S	TMEM59L_uc010ebu.1_Silent_p.S148S	NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	148						Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						GGGCCCTCTCCCTCTTGGACT	0.507													24	66					0	0	0.003330	0	0
NCAN	1463	broad.mit.edu	37	19	19334879	19334879	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:19334879C>T	uc002nlz.2	+	4	624	c.525C>T	c.(523-525)TTC>TTT	p.F175F	NCAN_uc010ecc.1_5'Flank	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	175	Link 1.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CACTGACCTTCGCTGAGGCCC	0.577													17	34					0	0	0.001882	0	0
ZNF676	163223	broad.mit.edu	37	19	22362968	22362968	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:22362968G>A	uc002nqs.1	-	3	1869	c.1551C>T	c.(1549-1551)TCC>TCT	p.S517S		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	517	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TAAGGATCGAGGACCAGCTGA	0.403													8	25					0	0	0.003080	0	0
C19orf46	163183	broad.mit.edu	37	19	36494300	36494300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:36494300G>A	uc002ocq.1	-	8	1243	c.1154C>T	c.(1153-1155)GCC>GTC	p.A385V	C19orf46_uc002ocr.1_Silent_p.C325C|C19orf46_uc002ocs.1_Missense_Mutation_p.A272V|C19orf46_uc010een.1_Missense_Mutation_p.A300V	NM_001039876	NP_001034965	Q8N205	SYNE4_HUMAN	hypothetical protein LOC163183	385	KASH.|Perinuclear space (Potential).				establishment of epithelial cell apical/basal polarity	integral to nuclear outer membrane	actin binding			ovary(1)	1	all_lung(56;1.35e-06)|Lung NSC(56;2.15e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GGGTATTCGGGCATGAGAGCA	0.463													3	15					0	0	0.004672	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677598	37677598	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:37677598G>A	uc002ofq.2	-	5	1095	c.841C>T	c.(841-843)CAG>TAG	p.Q281*	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Nonsense_Mutation_p.Q95*	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	281	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGTGTTTTCTGGATGAAGGCC	0.413													32	100					0	0	0.003755	0	0
HKR1	284459	broad.mit.edu	37	19	37853799	37853799	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:37853799C>T	uc002ogb.2	+	6	1371	c.1102C>T	c.(1102-1104)CTG>TTG	p.L368L	HKR1_uc002ofx.2_Silent_p.L84L|HKR1_uc002ofy.2_Silent_p.L84L|HKR1_uc002oga.2_Silent_p.L350L|HKR1_uc010xto.1_Silent_p.L350L|HKR1_uc002ogc.2_Silent_p.L349L|HKR1_uc010xtp.1_Silent_p.L307L|HKR1_uc002ogd.2_Silent_p.L307L	NM_181786	NP_861451	P10072	HKR1_HUMAN	GLI-Kruppel family member HKR1	368	C2H2-type 3.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAGCTTTAGCCTGAAGTCAAA	0.532													15	41					0	0	0.002450	0	0
RYR1	6261	broad.mit.edu	37	19	38976641	38976641	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:38976641C>T	uc002oit.2	+	34	5476	c.5346C>T	c.(5344-5346)TTC>TTT	p.F1782F	RYR1_uc002oiu.2_Silent_p.F1782F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1782	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCCCCTGTTTCGTGGCCGCTC	0.682													12	22					0	0	0.000978	0	0
RYR1	6261	broad.mit.edu	37	19	39008001	39008001	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:39008001C>T	uc002oit.2	+	66	9818	c.9688C>T	c.(9688-9690)CTG>TTG	p.L3230L	RYR1_uc002oiu.2_Silent_p.L3230L|RYR1_uc002oiv.1_Silent_p.L150L|RYR1_uc010xuf.1_Silent_p.L150L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3230					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TACCCCAGTCCTGGGGCTCCC	0.637													12	16					0	0	0.001368	0	0
CNTD2	79935	broad.mit.edu	37	19	40732416	40732416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:40732416G>A	uc010xvi.1	-	1	182	c.133C>T	c.(133-135)CCC>TCC	p.P45S	CNTD2_uc002ond.2_RNA	NM_024877	NP_079153	Q9H8S5	CNTD2_HUMAN	cyclin N-terminal domain containing 2 isoform 2	45					regulation of cyclin-dependent protein kinase activity		protein kinase binding				0						AAGCCGTCGGGGACTGCGGCG	0.731													9	16					0	0	0.008291	0	0
CYP2F1	1572	broad.mit.edu	37	19	41622175	41622175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:41622175G>A	uc002opu.1	+	2	138	c.82G>A	c.(82-84)GGA>AGA	p.G28R	CYP2F1_uc010xvw.1_Intron|CYP2F1_uc010xvv.1_Missense_Mutation_p.G28R|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	28					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						AAGAGATAAGGGAAAGCTGCC	0.567													33	88					0	0	0.005524	0	0
EXOSC5	56915	broad.mit.edu	37	19	41903149	41903149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:41903149G>A	uc002oqo.2	-	1	108	c.85C>T	c.(85-87)CGG>TGG	p.R29W	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Intron|BCKDHA_uc002oqp.1_5'Flank|BCKDHA_uc002oqq.2_5'Flank|BCKDHA_uc002oqr.2_5'Flank|BCKDHA_uc010xvz.1_5'Flank	NM_020158	NP_064543	Q9NQT4	EXOS5_HUMAN	exosome component Rrp46	29					DNA deamination|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5'-exoribonuclease activity|protein binding|RNA binding				0						GCAAAGTGCCGGAGGCTGCAG	0.592													33	64					0	0	0.002445	0	0
CEACAM5	1048	broad.mit.edu	37	19	42221515	42221515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:42221515C>T	uc002ork.2	+	5	1221	c.1100C>T	c.(1099-1101)CCC>CTC	p.P367L	CEACAM5_uc002orj.1_Missense_Mutation_p.P366L|CEACAM5_uc002orl.2_Missense_Mutation_p.P367L	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	367	Ig-like 4.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CCGGTCAGTCCCAGGCTGCAG	0.498													39	88					0	0	0.002852	0	0
CEACAM6	4680	broad.mit.edu	37	19	42266031	42266031	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:42266031C>T	uc002orm.2	+	4	1007	c.858C>T	c.(856-858)ATC>ATT	p.I286I		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	286	Ig-like C2-type 2.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		AGCTCTTTATCCCCAACATCA	0.488													14	44					0	0	0.003163	0	0
PSG1	5669	broad.mit.edu	37	19	43372272	43372272	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:43372272G>A	uc002ovb.2	-	5	1362	c.1224C>T	c.(1222-1224)TCC>TCT	p.S408S	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_Intron|PSG1_uc002our.1_Silent_p.S408S|PSG1_uc010eio.1_Silent_p.S408S|PSG1_uc002oux.1_Silent_p.S337S|PSG1_uc002ouy.1_Silent_p.S315S|PSG1_uc002ouz.1_Silent_p.S408S|PSG1_uc002ova.1_Silent_p.S315S|PSG1_uc002ovc.2_Silent_p.S315S|PSG1_uc002ovd.1_Silent_p.S408S	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	408	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CGACTGTCATGGATTTGGAGC	0.458													57	149					0	0	0.003610	0	0
PSG5	5673	broad.mit.edu	37	19	43689174	43689174	+	Missense_Mutation	SNP	C	T	T	rs146386413		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:43689174C>T	uc002ovu.2	-	2	321	c.190G>A	c.(190-192)GGC>AGC	p.G64S	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_5'UTR|PSG5_uc002ovx.2_Missense_Mutation_p.G64S|PSG5_uc002ovv.2_Missense_Mutation_p.G64S|PSG5_uc002ovw.2_Missense_Mutation_p.G64S	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	64	Ig-like V-type.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				CAGATGTAGCCAGCAAGATTC	0.448													43	132					0	0	0.008740	0	0
PSG5	5673	broad.mit.edu	37	19	43689225	43689225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:43689225C>T	uc002ovu.2	-	2	270	c.139G>A	c.(139-141)GAG>AAG	p.E47K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_5'UTR|PSG5_uc002ovx.2_Missense_Mutation_p.E47K|PSG5_uc002ovv.2_Missense_Mutation_p.E47K|PSG5_uc002ovw.2_Missense_Mutation_p.E47K	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	47	Ig-like V-type.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				TCCTTCCCCTCGGAAACTTTG	0.468													46	86					0	0	0.003610	0	0
ZNF230	7773	broad.mit.edu	37	19	44514741	44514741	+	Missense_Mutation	SNP	C	T	T	rs112504832	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:44514741C>T	uc002oyb.1	+	5	801	c.550C>T	c.(550-552)CGT>TGT	p.R184C		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	184	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				CTCAGCTCTTCGTATTCACCA	0.448													20	44					0	0	0.010504	0	0
ZNF222	7673	broad.mit.edu	37	19	44536578	44536578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:44536578C>T	uc002oyc.2	+	4	934	c.751C>T	c.(751-753)CAT>TAT	p.H251Y	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Missense_Mutation_p.H291Y|ZNF222_uc002oyd.2_Missense_Mutation_p.H197Y	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	251	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				TCACAGAATTCATACTGGGGA	0.393													24	44					0	0	0.003954	0	0
PVRL2	5819	broad.mit.edu	37	19	45368885	45368885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:45368885C>T	uc002ozw.1	+	2	836	c.446C>T	c.(445-447)TCC>TTC	p.S149F	PVRL2_uc002ozv.2_Missense_Mutation_p.S149F	NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	149	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		CCCAAGGGGTCCGTCCGAGGG	0.662													29	38					0	0	0.009535	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45895344	45895345	+	Missense_Mutation	DNP	GG	AA	AA	rs141349857		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:45895344_45895345GG>AA	uc002pbn.2	-	8	1685_1686	c.1608_1609CC>TT	c.(1606-1611)CCCCCT>CCTTCT	p.P537S	PPP1R13L_uc002pbm.2_Missense_Mutation_p.P116S|PPP1R13L_uc002pbo.2_Missense_Mutation_p.P537S	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	537	Pro-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		TTGTGGGTAGGGGGCAGGGCCA	0.683													25	43					0	0	0.004672	0	0
DMWD	1762	broad.mit.edu	37	19	46289693	46289693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:46289693G>A	uc002pdj.1	-	3	1107	c.1061C>T	c.(1060-1062)TCC>TTC	p.S354F	DMWD_uc002pdk.1_Missense_Mutation_p.S354F|DMWD_uc010eko.1_Missense_Mutation_p.S39F	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	354	WD 3.				meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		CTCGGTGAAGGACCACACGGT	0.647													19	57					0	0	0.007413	0	0
NPAS1	4861	broad.mit.edu	37	19	47548651	47548651	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:47548651G>A	uc002pfw.2	+	12	1711	c.1515G>A	c.(1513-1515)CAG>CAA	p.Q505Q	NPAS1_uc002pfx.2_Silent_p.Q330Q|NPAS1_uc002pfy.2_Silent_p.Q505Q|NPAS1_uc010xyj.1_3'UTR	NM_002517	NP_002508	Q99742	NPAS1_HUMAN	neuronal PAS domain protein 1	505					central nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0		all_cancers(25;4.31e-08)|all_epithelial(76;2.96e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.102)		all cancers(93;6.02e-05)|OV - Ovarian serous cystadenocarcinoma(262;7.35e-05)|Epithelial(262;0.00389)|GBM - Glioblastoma multiforme(486;0.0252)		TCCTGAAGCAGGATCCGGTGC	0.731													7	21					0	0	0.003080	0	0
C5AR1	728	broad.mit.edu	37	19	47823062	47823062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:47823062G>A	uc002pgj.1	+	2	77	c.28G>A	c.(28-30)GAT>AAT	p.D10N		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	10	Extracellular (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		TACCACCCCTGATTATGGGCA	0.532													16	39					0	0	0.004990	0	0
RPS11	6205	broad.mit.edu	37	19	50000830	50000830	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:50000830C>T	uc002pob.1	+	3	281	c.201C>T	c.(199-201)TCC>TCT	p.S67S	SNORD35B_uc002poc.2_5'Flank	NM_001015	NP_001006	P62280	RS11_HUMAN	ribosomal protein S11	67					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|rRNA binding|structural constituent of ribosome				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00206)|GBM - Glioblastoma multiforme(486;0.0245)		GTAATGTGTCCATTCGAGGGC	0.542													13	41					0	0	0.001855	0	0
RCN3	57333	broad.mit.edu	37	19	50045922	50045922	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:50045922T>G	uc002poj.2	+	6	1239	c.792T>G	c.(790-792)AGT>AGG	p.S264R		NM_020650	NP_065701	Q96D15	RCN3_HUMAN	reticulocalbin 3, EF-hand calcium binding domain	264	EF-hand 5.|5 (Potential).					endoplasmic reticulum lumen	calcium ion binding|protein binding			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00295)|GBM - Glioblastoma multiforme(134;0.0159)		TGGATGGGAGTGAGGTGGGCC	0.677													3	9					0	0	0.004672	0	0
PNKP	11284	broad.mit.edu	37	19	50370417	50370417	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:50370417G>A	uc002pqh.2	-	1	97	c.45C>T	c.(43-45)CCC>CCT	p.P15P	PNKP_uc002pqg.2_5'Flank|PNKP_uc002pqi.2_5'UTR|PNKP_uc002pqj.2_Silent_p.P15P|PNKP_uc010enm.2_Silent_p.P15P|PNKP_uc002pqk.2_Silent_p.P15P	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	15					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		CTCCCCCAGGGGGGCTCTCGA	0.711								Other_BER_factors					5	20					0	0	0.000602	0	0
LRRC4B	94030	broad.mit.edu	37	19	51022436	51022436	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:51022436G>A	uc002pss.2	-	3	671	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	178	LRR 4.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		GCACGCGGTTGAAGGCGTAGG	0.672													20	43					0	0	0.010504	0	0
SHANK1	50944	broad.mit.edu	37	19	51205794	51205794	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:51205794G>A	uc002psx.1	-	11	1696	c.1677C>T	c.(1675-1677)TTC>TTT	p.F559F		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	559	SH3.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		TCACAGCCATGAAGGAGCGTC	0.701													8	18					0	0	0.006214	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51629369	51629369	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:51629369C>T	uc002pvu.2	+	3	799	c.732C>T	c.(730-732)TTC>TTT	p.F244F	SIGLEC9_uc010yct.1_Silent_p.F244F	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	244	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		TGACTGTCTTCCAAGGAGACG	0.607													11	31					0	0	0.001855	0	0
C19orf75	284369	broad.mit.edu	37	19	51770669	51770669	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:51770669G>A	uc002pwb.1	+	5	834	c.453G>A	c.(451-453)GCG>GCA	p.A151A	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Silent_p.A57A	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	151						integral to membrane				ovary(1)|pancreas(1)	2						AAGCTGCAGCGATCAGAGCAA	0.468													29	52					0	0	0.006320	0	0
HAS1	3036	broad.mit.edu	37	19	52217175	52217175	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:52217175G>A	uc002pxo.1	-	5	1277	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	HAS1_uc010epc.1_Silent_p.F14F|HAS1_uc010epd.1_3'UTR|HAS1_uc002pxn.1_Silent_p.F421F|HAS1_uc002pxp.1_Silent_p.F413F	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	414	Helical; Name=3; (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		TGGCCGCCACGAAGAAGGGGA	0.672													6	22					0	0	0.006214	0	0
FPR3	2359	broad.mit.edu	37	19	52327323	52327323	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:52327323A>G	uc002pxt.1	+	2	506	c.322A>G	c.(322-324)AAC>GAC	p.N108D		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	108	Helical; Name=3; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						GATAGACATCAACCTGTTTGT	0.478													14	24					0	0	0.001855	0	0
VN1R2	317701	broad.mit.edu	37	19	53762620	53762620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:53762620C>T	uc002qbi.2	+	1	1076	c.992C>T	c.(991-993)TCC>TTC	p.S331F		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	331	Helical; Name=6; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		TACGCCCTTTCCTTCATCACC	0.448													32	92					0	0	0.002096	0	0
LILRB1	10859	broad.mit.edu	37	19	55143633	55143633	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:55143633G>A	uc002qgj.2	+	6	946	c.606G>A	c.(604-606)TCG>TCA	p.S202S	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.S202S|LILRB1_uc002qgk.2_Silent_p.S202S|LILRB1_uc002qgm.2_Silent_p.S202S|LILRB1_uc010erq.2_Silent_p.S202S|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	202	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CTTATGACTCGAACTCTCCCT	0.602										HNSCC(37;0.09)			27	69					0	0	0.008361	0	0
LILRP2	79166	broad.mit.edu	37	19	55221631	55221631	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:55221631C>T	uc002qgs.1	+	1		c.2031C>T			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCATCCTGATCGCAGGTGAGG	0.677													11	23					0	0	0.000978	0	0
LILRP2	79166	broad.mit.edu	37	19	55222099	55222099	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:55222099C>T	uc002qgs.1	+	1		c.2499C>T			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GTGACCTCAGCCCACGCGGGG	0.622													15	28					0	0	0.002450	0	0
NLRP7	199713	broad.mit.edu	37	19	55449500	55449500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:55449500C>T	uc002qih.3	-	5	2117	c.2041G>A	c.(2041-2043)GAA>AAA	p.E681K	NLRP7_uc002qig.3_Missense_Mutation_p.E653K|NLRP7_uc002qii.3_Missense_Mutation_p.E681K|NLRP7_uc010esk.2_Missense_Mutation_p.E681K|NLRP7_uc010esl.2_Missense_Mutation_p.E709K	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	681	LRR 2.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TGTTTCACTTCCAGAAACTTG	0.498													39	90					0	0	0.006999	0	0
NLRP7	199713	broad.mit.edu	37	19	55450858	55450858	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:55450858G>A	uc002qih.3	-	4	1405	c.1329C>T	c.(1327-1329)TCC>TCT	p.S443S	NLRP7_uc002qig.3_Silent_p.S443S|NLRP7_uc002qii.3_Silent_p.S443S|NLRP7_uc010esk.2_Silent_p.S443S|NLRP7_uc010esl.2_Silent_p.S471S	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	443	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GACGGAGGTCGGACTCCTGCA	0.642													9	33					0	0	0.006214	0	0
NLRP9	338321	broad.mit.edu	37	19	56243537	56243537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:56243537C>T	uc002qly.2	-	2	1688	c.1660G>A	c.(1660-1662)GAA>AAA	p.E554K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	554						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AATTCTTTTTCCTGAGTTTCA	0.348													10	18					0	0	0.001368	0	0
NLRP11	204801	broad.mit.edu	37	19	56319282	56319282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:56319282C>T	uc010ygf.1	-	6	2651	c.1940G>A	c.(1939-1941)GGT>GAT	p.G647D	NLRP11_uc002qlz.2_Intron|NLRP11_uc002qmb.2_Missense_Mutation_p.G548D|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	647	LRR 2.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TTCTGAAATACCATTAAGGTC	0.433													21	48					0	0	0.002299	0	0
NLRP4	147945	broad.mit.edu	37	19	56369516	56369516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:56369516G>A	uc002qmd.3	+	3	1179	c.757G>A	c.(757-759)GAG>AAG	p.E253K	NLRP4_uc002qmf.2_Missense_Mutation_p.E178K|NLRP4_uc010etf.2_Missense_Mutation_p.E84K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	253	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TGACTTGATGGAGAAACGGCC	0.572													31	62					0	0	0.004289	0	0
NLRP8	126205	broad.mit.edu	37	19	56466362	56466362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:56466362C>T	uc002qmh.2	+	3	1009	c.938C>T	c.(937-939)TCT>TTT	p.S313F	NLRP8_uc010etg.2_Missense_Mutation_p.S313F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	313	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTGCCTGGGTCTGTCCTACTG	0.507													13	59					0	0	0.001855	0	0
ZNF667	63934	broad.mit.edu	37	19	56953217	56953217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:56953217C>T	uc002qnd.2	-	5	1309	c.1147G>A	c.(1147-1149)GAA>AAA	p.E383K	ZNF667_uc010etl.2_Missense_Mutation_p.E165K|ZNF667_uc002qne.2_Missense_Mutation_p.E383K|ZNF667_uc010etm.2_Missense_Mutation_p.E326K	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	383					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		TATAGTTTTTCTCCATTATGA	0.353													15	29					0	0	0.002450	0	0
ZNF471	57573	broad.mit.edu	37	19	57037299	57037299	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:57037299T>C	uc002qnh.2	+	5	1996	c.1863T>C	c.(1861-1863)CAT>CAC	p.H621H		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	621	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		AAAGAAGTCATACTGGAGAAG	0.413													7	13					0	0	0.003080	0	0
ZIM2	23619	broad.mit.edu	37	19	57293392	57293392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:57293392G>A	uc002qnr.2	-	9	957	c.575C>T	c.(574-576)TCC>TTC	p.S192F	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnq.2_Missense_Mutation_p.S192F|ZIM2_uc010etp.2_Missense_Mutation_p.S192F|ZIM2_uc010ygs.1_Missense_Mutation_p.S192F	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	192	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		AGCACTAAGGGAACTAAGTTC	0.502													26	53					0	0	0.005443	0	0
ZIM3	114026	broad.mit.edu	37	19	57646543	57646543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:57646543C>T	uc002qnz.1	-	5	1548	c.1162G>A	c.(1162-1164)GAA>AAA	p.E388K		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	388					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TAGGGCTTTTCCCCAGTATGG	0.388													17	67					0	0	0.004007	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189660	58189660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr19:58189660C>T	uc002qpu.2	+	5	1386	c.689C>T	c.(688-690)CCT>CTT	p.P230L		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	230					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGTCCTAGGCCTGAAGAGGGA	0.408													4	11					0	0	0.000602	0	0
SNTG2	54221	broad.mit.edu	37	2	1271191	1271191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:1271191G>A	uc002qwq.2	+	14	1260	c.1132G>A	c.(1132-1134)GAT>AAT	p.D378N	SNTG2_uc010ewi.2_Missense_Mutation_p.D251N	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	378	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GGGTCTTCAAGATTTTGACTT	0.522													4	11					0	0	0.009096	0	0
MYT1L	23040	broad.mit.edu	37	2	1926949	1926949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:1926949C>T	uc002qxe.2	-	10	1419	c.592G>A	c.(592-594)GAT>AAT	p.D198N	MYT1L_uc002qxd.2_Missense_Mutation_p.D198N|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	198					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		ACCAGTTCATCGTAATTGTCA	0.403													11	10					0	0	0.000978	0	0
ADI1	55256	broad.mit.edu	37	2	3504598	3504598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:3504598G>A	uc002qxp.3	-	3	499	c.407C>T	c.(406-408)ACG>ATG	p.T136M	ADI1_uc010yiq.1_RNA	NM_018269	NP_060739	Q9BV57	MTND_HUMAN	acireductone dioxygenase 1	136					L-methionine salvage from methylthioadenosine	cytoplasm|nucleus|plasma membrane	acireductone dioxygenase (Ni2+-requiring) activity|metal ion binding|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0729)|Epithelial(75;0.173)|all cancers(51;0.228)		CTCGTCCACCGTGAAGCGGTG	0.637													9	21					0	0	0.004482	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765916	18765916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:18765916G>A	uc002rcz.2	-	5	871	c.767C>T	c.(766-768)TCC>TTC	p.S256F	NT5C1B_uc002rcy.2_Missense_Mutation_p.S256F|NT5C1B_uc010exr.2_Missense_Mutation_p.S198F|NT5C1B_uc010yju.1_Missense_Mutation_p.S196F|NT5C1B_uc002rda.2_Missense_Mutation_p.S196F|NT5C1B_uc010yjv.1_Missense_Mutation_p.S273F|NT5C1B_uc010yjw.1_Missense_Mutation_p.S239F|NT5C1B_uc010exs.2_Missense_Mutation_p.S258F|NT5C1B_uc002rdb.1_Missense_Mutation_p.S48F	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	256					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				CAGCTGGGTGGAGGCGGGGTA	0.657													6	14					0	0	0.003080	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765998	18765998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:18765998C>T	uc002rcz.2	-	5	789	c.685G>A	c.(685-687)GAC>AAC	p.D229N	NT5C1B_uc002rcy.2_Missense_Mutation_p.D229N|NT5C1B_uc010exr.2_Missense_Mutation_p.D171N|NT5C1B_uc010yju.1_Missense_Mutation_p.D169N|NT5C1B_uc002rda.2_Missense_Mutation_p.D169N|NT5C1B_uc010yjv.1_Missense_Mutation_p.D246N|NT5C1B_uc010yjw.1_Missense_Mutation_p.D212N|NT5C1B_uc010exs.2_Missense_Mutation_p.D231N|NT5C1B_uc002rdb.1_Missense_Mutation_p.D21N	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	229					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GGCTGCGAGTCCCGGGTCTGG	0.677													10	22					0	0	0.001368	0	0
HS1BP3	64342	broad.mit.edu	37	2	20838367	20838367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:20838367G>A	uc002rdw.1	-	4	493	c.452C>T	c.(451-453)TCT>TTT	p.S151F	HS1BP3_uc002rdx.2_Missense_Mutation_p.S151F	NM_022460	NP_071905	Q53T59	H1BP3_HUMAN	HCLS1 binding protein 3	151					cell communication		phosphatidylinositol binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATCCAGGACAGAGGAATCTCT	0.562													12	22					0	0	0.001855	0	0
APOB	338	broad.mit.edu	37	2	21229685	21229685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:21229685G>A	uc002red.2	-	26	10183	c.10055C>T	c.(10054-10056)ACC>ATC	p.T3352I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3352					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCAGCATTGGTATTCAGTGT	0.373													109	266					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21231675	21231675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:21231675G>A	uc002red.2	-	26	8193	c.8065C>T	c.(8065-8067)CCA>TCA	p.P2689S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2689					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TATATATCTGGAACGGGCCAC	0.438													147	312					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21234537	21234537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:21234537C>T	uc002red.2	-	26	5331	c.5203G>A	c.(5203-5205)GGA>AGA	p.G1735R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1735					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGCTTAAGTCCTTCTTGACTG	0.443													210	393					0	0	0.003610	0	0
ASXL2	55252	broad.mit.edu	37	2	25972779	25972779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:25972779G>A	uc002rgs.2	-	11	1867	c.1646C>T	c.(1645-1647)ACT>ATT	p.T549I	ASXL2_uc002rgt.1_Missense_Mutation_p.T289I	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	549					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTCATATTAGTCTCCTGTGG	0.502													21	55					0	0	0.010504	0	0
OTOF	9381	broad.mit.edu	37	2	26739411	26739411	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:26739411C>T	uc002rhk.2	-	5	511	c.384G>A	c.(382-384)TGG>TGA	p.W128*	OTOF_uc010ylb.1_RNA	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	128	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCCCATCGTCCCAGGAGCCCA	0.642													29	54					0	0	0.009535	0	0
C2orf53	339779	broad.mit.edu	37	2	27361021	27361021	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:27361021G>A	uc002rjb.2	-	3	757	c.177C>T	c.(175-177)CCC>CCT	p.P59P		NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	59	Pro-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAGGGGAGGAGGGACGACGGG	0.567													3	25					0	0	0.004672	0	0
C2orf71	388939	broad.mit.edu	37	2	29295755	29295755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:29295755G>A	uc002rmt.1	-	1	1373	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	458					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						AATCCCAAAGGAATCACATGG	0.557													17	48					0	0	0.006122	0	0
GALNT14	79623	broad.mit.edu	37	2	31133921	31133921	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:31133921C>T	uc002rnr.2	-	15	2124	c.1505G>A	c.(1504-1506)TGG>TAG	p.W502*	GALNT14_uc002rnq.2_Nonsense_Mutation_p.W482*|GALNT14_uc002rns.2_Nonsense_Mutation_p.W507*|GALNT14_uc010ymr.1_Nonsense_Mutation_p.W467*	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	502	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					AGTTTTGGTCCATTGCTGGTA	0.493													22	44					0	0	0.003330	0	0
XDH	7498	broad.mit.edu	37	2	31621561	31621561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:31621561C>T	uc002rnv.1	-	5	390	c.311G>A	c.(310-312)AGA>AAA	p.R104K		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	104					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTTGGCAATTCTCTCCTAAAA	0.557													30	68					0	0	0.002445	0	0
LTBP1	4052	broad.mit.edu	37	2	33525604	33525604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:33525604G>A	uc002ros.2	+	21	3325	c.3325G>A	c.(3325-3327)GGG>AGG	p.G1109R	LTBP1_uc002rot.2_Missense_Mutation_p.G783R|LTBP1_uc002rou.2_Missense_Mutation_p.G782R|LTBP1_uc002rov.2_Missense_Mutation_p.G729R|LTBP1_uc010ymz.1_Missense_Mutation_p.G782R|LTBP1_uc010yna.1_Missense_Mutation_p.G729R|LTBP1_uc010ynb.1_Missense_Mutation_p.G48R	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1108	EGF-like 9; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CTGTGGACAGGGGTACCAGCT	0.468													8	25					0	0	0.006214	0	0
NRXN1	9378	broad.mit.edu	37	2	50779811	50779811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:50779811G>A	uc010fbq.2	-	9	3270	c.1793C>T	c.(1792-1794)TCA>TTA	p.S598L	NRXN1_uc002rxb.3_Missense_Mutation_p.S230L|NRXN1_uc002rxe.3_Missense_Mutation_p.S558L|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TATAGTACCTGACCCCATGTC	0.443													20	55					0	0	0.007413	0	0
BCL11A	53335	broad.mit.edu	37	2	60688266	60688266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:60688266G>A	uc002sae.1	-	4	2009	c.1781C>T	c.(1780-1782)TCG>TTG	p.S594L	BCL11A_uc002sab.2_Missense_Mutation_p.S594L|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.S263L|BCL11A_uc010ypj.1_Missense_Mutation_p.S560L|BCL11A_uc002sad.1_Missense_Mutation_p.S442L|BCL11A_uc002saf.1_Missense_Mutation_p.S560L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	594					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TATGCGGTCCGACTCGCCGGC	0.692			T	IGH@	B-CLL								55	108					0	0	0.003610	0	0
LOC388955	388955	broad.mit.edu	37	2	63849584	63849584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:63849584G>A	uc002sck.1	-	1	576	c.382C>T	c.(382-384)CGG>TGG	p.R128W		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						CAGGCTTCCCGGCGGATTTCA	0.527													8	17					0	0	0.003080	0	0
LOXL3	84695	broad.mit.edu	37	2	74763204	74763204	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:74763204C>G	uc002smp.1	-	7	1239	c.1167G>C	c.(1165-1167)AAG>AAC	p.K389N	LOXL3_uc002smo.1_Missense_Mutation_p.K28N|LOXL3_uc010ffm.1_Missense_Mutation_p.K389N|LOXL3_uc002smq.1_Missense_Mutation_p.K244N|LOXL3_uc010ffn.1_Missense_Mutation_p.K244N	NM_032603	NP_115992	P58215	LOXL3_HUMAN	lysyl oxidase-like 3 precursor	389	SRCR 3.					extracellular space|membrane	copper ion binding|protein-lysine 6-oxidase activity|scavenger receptor activity				0						CTGTGATGTTCTTGTGGGGGC	0.567													32	63					0	0	0.002445	0	0
SEMA4F	10505	broad.mit.edu	37	2	74889939	74889939	+	Silent	SNP	A	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:74889939A>C	uc002sna.1	+	5	648	c.537A>C	c.(535-537)GCA>GCC	p.A179A	SEMA4F_uc010ysb.1_Intron|SEMA4F_uc010ffq.1_Silent_p.A146A|SEMA4F_uc010ffr.1_Intron|SEMA4F_uc002snb.1_Intron|SEMA4F_uc002snc.1_Intron	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	179	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AGCGGTCAGCAGCTGTAATGG	0.507													16	67					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	2	89475938	89475938	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:89475938G>A	uc010ytr.1	-	28		c.3543C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CAGAGAACCGGTTAGAAATCT	0.502													36	83					0	0	0.004878	0	0
IL1RL2	8808	broad.mit.edu	37	2	102818036	102818036	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:102818036G>A	uc002tbs.2	+	5	636	c.510G>A	c.(508-510)GGG>GGA	p.G170G	IL1RL2_uc002tbt.2_Silent_p.G53G	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	170	Extracellular (Potential).|Ig-like C2-type 2.				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						AGATTAAAGGGGAGCGGTTCA	0.413													10	35					0	0	0.008291	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068513	103068513	+	Missense_Mutation	SNP	C	T	T	rs149244380	by1000genomes	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:103068513C>T	uc002tbx.2	+	12	2156	c.1672C>T	c.(1672-1674)CAC>TAC	p.H558Y	IL18RAP_uc010fiz.2_Missense_Mutation_p.H416Y	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	558	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						AATGCGCTACCACATGCCTGT	0.458													46	76					0	0	0.003610	0	0
ACOXL	55289	broad.mit.edu	37	2	111789215	111789215	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:111789215G>A	uc002tgr.3	+	16	1607	c.1383G>A	c.(1381-1383)AAG>AAA	p.K461K	ACOXL_uc010fkc.2_Silent_p.K431K|ACOXL_uc010yxk.1_Silent_p.K431K	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	461					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						TAAAGACCAAGAAGGAGGATT	0.453													16	28					0	0	0.006122	0	0
MERTK	10461	broad.mit.edu	37	2	112761519	112761519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:112761519G>A	uc002thk.1	+	13	1947	c.1825G>A	c.(1825-1827)GAA>AAA	p.E609K	MERTK_uc002thl.1_Missense_Mutation_p.E433K	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	609	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TCTTAAGCAGGAAGATGGGAC	0.463													11	40					0	0	0.008291	0	0
ZC3H6	376940	broad.mit.edu	37	2	113089501	113089501	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:113089501C>T	uc002thq.1	+	12	3400	c.3006C>T	c.(3004-3006)AAC>AAT	p.N1002N		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	1002							nucleic acid binding|zinc ion binding			ovary(3)|central_nervous_system(1)	4						CCAGATCAAACCCTGGTTCAT	0.522													8	16					0	0	0.004482	0	0
IL1F8	27177	broad.mit.edu	37	2	113786542	113786542	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:113786542G>A	uc002tiq.1	-	4	339	c.235C>T	c.(235-237)CAG>TAG	p.Q79*	IL1F8_uc002tir.1_Nonsense_Mutation_p.Q79*	NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	79					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						GGCTTGCCCTGAATTTCTGCA	0.398													21	41					0	0	0.005443	0	0
DPP10	57628	broad.mit.edu	37	2	116447288	116447288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:116447288C>T	uc002tla.1	+	6	924	c.467C>T	c.(466-468)TCA>TTA	p.S156L	DPP10_uc002tlb.1_Missense_Mutation_p.S106L|DPP10_uc002tlc.1_Missense_Mutation_p.S152L|DPP10_uc002tle.2_Missense_Mutation_p.S160L|DPP10_uc002tlf.1_Missense_Mutation_p.S149L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	156	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TATACTGCTTCATATGTGATT	0.259													9	3					0	0	0.006214	0	0
GLI2	2736	broad.mit.edu	37	2	121685022	121685022	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:121685022T>A	uc010flp.2	+	2	264	c.234T>A	c.(232-234)CAT>CAA	p.H78Q	GLI2_uc010yyu.1_Missense_Mutation_p.H78Q|GLI2_uc002tmp.1_Missense_Mutation_p.H78Q|GLI2_uc010fln.1_RNA|GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Missense_Mutation_p.H78Q|GLI2_uc010flo.1_Intron|GLI2_uc002tmw.1_Missense_Mutation_p.H78Q	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	78					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				ACGAGCCTCATTCTGTCCACG	0.622													28	74					0	0	0.007291	0	0
GLI2	2736	broad.mit.edu	37	2	121746665	121746665	+	Missense_Mutation	SNP	G	A	A	rs150597008		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:121746665G>A	uc010flp.2	+	13	3205	c.3175G>A	c.(3175-3177)GAC>AAC	p.D1059N	GLI2_uc002tmq.1_Missense_Mutation_p.D731N|GLI2_uc002tmr.1_Missense_Mutation_p.D714N|GLI2_uc002tmt.3_Missense_Mutation_p.D731N|GLI2_uc002tmu.3_Missense_Mutation_p.D714N	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1059					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GCCGGAGGACGACCTGGTGCT	0.706													17	48					0	0	0.007413	0	0
POTEE	445582	broad.mit.edu	37	2	131976336	131976336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:131976336G>A	uc002tsn.2	+	1	413	c.361G>A	c.(361-363)GGA>AGA	p.G121R	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	121							ATP binding				0						GGGCGCTTGGGGAGACTACGA	0.602													21	58					0	0	0.001882	0	0
CCDC74A	90557	broad.mit.edu	37	2	132289353	132289353	+	Missense_Mutation	SNP	C	T	T	rs145934024		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:132289353C>T	uc002tta.2	+	4	713	c.661C>T	c.(661-663)CCT>TCT	p.P221S	CCDC74A_uc002ttb.2_Missense_Mutation_p.P155S	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	221								p.P221S(1)		skin(1)	1						GGACAAAGTTCCTGGGGTACA	0.577													25	56					0	0	0.005443	0	0
LCT	3938	broad.mit.edu	37	2	136570092	136570092	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:136570092G>A	uc002tuu.1	-	7	2153	c.2142C>T	c.(2140-2142)AAC>AAT	p.N714N		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	714	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GCCACACATGGTTCACGTGTT	0.537													20	38					0	0	0.010504	0	0
THSD7B	80731	broad.mit.edu	37	2	137988647	137988647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:137988647C>T	uc002tva.1	+	7	1664	c.1664C>T	c.(1663-1665)CCC>CTC	p.P555L	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P445L	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGCCCAGTTCCCCCTCCTCCT	0.473													13	29					0	0	0.002450	0	0
THSD7B	80731	broad.mit.edu	37	2	138169301	138169301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:138169301C>T	uc002tva.1	+	13	2725	c.2725C>T	c.(2725-2727)CCA>TCA	p.P909S	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P799S	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TTGCATTCTTCCAGAAGGCAG	0.483													30	45					0	0	0.009535	0	0
THSD7B	80731	broad.mit.edu	37	2	138400061	138400061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:138400061G>A	uc002tva.1	+	20	3716	c.3716G>A	c.(3715-3717)CGA>CAA	p.R1239Q	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ATTTTAGGTCGAATGAGCCGG	0.478													25	70					0	0	0.003954	0	0
THSD7B	80731	broad.mit.edu	37	2	138414698	138414698	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:138414698G>A	uc002tva.1	+	23	4256	c.4256G>A	c.(4255-4257)TGG>TAG	p.W1419*	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CGAACTGTATGGTGCCAGCGT	0.413													14	41					0	0	0.004007	0	0
LRP1B	53353	broad.mit.edu	37	2	141215150	141215150	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:141215150C>T	uc002tvj.1	-	61	10668	c.9696G>A	c.(9694-9696)GGG>GGA	p.G3232G		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3232	Extracellular (Potential).|LDL-receptor class B 32.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACTTGGTTTTCCCATCAGTCC	0.428										TSP Lung(27;0.18)			14	45					0	0	0.003163	0	0
LRP1B	53353	broad.mit.edu	37	2	141641501	141641501	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:141641501T>A	uc002tvj.1	-	25	5026	c.4054A>T	c.(4054-4056)ATA>TTA	p.I1352L	LRP1B_uc010fnl.1_Missense_Mutation_p.I534L	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1352	Extracellular (Potential).|LDL-receptor class B 10.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTGCTGTCTATCCAGTATATG	0.493										TSP Lung(27;0.18)			27	65					0	0	0.007291	0	0
KYNU	8942	broad.mit.edu	37	2	143713841	143713841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:143713841C>T	uc002tvl.2	+	6	635	c.505C>T	c.(505-507)CAT>TAT	p.H169Y	KYNU_uc002tvk.2_Missense_Mutation_p.H169Y|KYNU_uc010fnm.2_Missense_Mutation_p.H169Y	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	169					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	CCCTTCTGATCATGTAAGGAC	0.343													5	16					0	0	0.001168	0	0
CACNB4	785	broad.mit.edu	37	2	152727112	152727112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:152727112G>A	uc002tya.2	-	8	700	c.632C>T	c.(631-633)CCT>CTT	p.P211L	CACNB4_uc002txy.2_Missense_Mutation_p.P177L|CACNB4_uc002txz.2_Missense_Mutation_p.P193L|CACNB4_uc010fnz.2_Missense_Mutation_p.P211L|CACNB4_uc002tyb.2_Missense_Mutation_p.P177L	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	211					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	ATCGTAAGGAGGAATGTGCTC	0.463													7	7					0	0	0.001984	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711613	155711613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:155711613G>A	uc002tyv.1	+	3	1489	c.1294G>A	c.(1294-1296)GAC>AAC	p.D432N	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	432	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	CAGCTTGGGAGACTTGCCCAT	0.413													16	47					0	0	0.004990	0	0
DPP4	1803	broad.mit.edu	37	2	162875264	162875264	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:162875264C>T	uc002ubz.2	-	16	1956	c.1395G>A	c.(1393-1395)GCG>GCA	p.A465A	DPP4_uc010fpb.2_Silent_p.A141A	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	465	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	GATAATACTTCGCCTCTTTAC	0.473													15	49					0	0	0.003163	0	0
KCNH7	90134	broad.mit.edu	37	2	163302691	163302691	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:163302691A>T	uc002uch.1	-	7	1603	c.1391T>A	c.(1390-1392)ATA>AAA	p.I464K	KCNH7_uc002uci.2_Missense_Mutation_p.I457K	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	464	Helical; Name=Segment S2; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TAAAATATCTATGATAAACAT	0.358													6	17					0	0	0.001168	0	0
COBLL1	22837	broad.mit.edu	37	2	165548907	165548907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:165548907C>T	uc010zcw.1	-	16	3563	c.3439G>A	c.(3439-3441)GAA>AAA	p.E1147K	COBLL1_uc002ucp.2_Missense_Mutation_p.E1080K|COBLL1_uc002ucq.2_Missense_Mutation_p.E1042K|COBLL1_uc010zcx.1_Missense_Mutation_p.E1088K|COBLL1_uc002ucn.2_Missense_Mutation_p.E508K|COBLL1_uc002uco.2_Missense_Mutation_p.E811K	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	1118										ovary(2)|pancreas(1)	3						GAGTTATTTTCCTACAAAAAT	0.318													7	17					0	0	0.001984	0	0
COBLL1	22837	broad.mit.edu	37	2	165551054	165551054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:165551054G>A	uc010zcw.1	-	15	3287	c.3163C>T	c.(3163-3165)CCC>TCC	p.P1055S	COBLL1_uc002ucp.2_Missense_Mutation_p.P988S|COBLL1_uc002ucq.2_Missense_Mutation_p.P950S|COBLL1_uc010zcx.1_Missense_Mutation_p.P996S|COBLL1_uc002ucn.2_Missense_Mutation_p.P416S|COBLL1_uc002uco.2_Missense_Mutation_p.P719S	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	1026										ovary(2)|pancreas(1)	3						GGAGCTATGGGAGGAGGGGAG	0.463													13	32					0	0	0.002450	0	0
SCN3A	6328	broad.mit.edu	37	2	166003341	166003341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:166003341C>T	uc002ucx.2	-	12	2071	c.1579G>A	c.(1579-1581)GAA>AAA	p.E527K	SCN3A_uc002ucy.2_Missense_Mutation_p.E527K|SCN3A_uc002ucz.2_Missense_Mutation_p.E527K|SCN3A_uc002uda.1_Missense_Mutation_p.E396K|SCN3A_uc002udb.1_Missense_Mutation_p.E396K	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	527						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TCTTCAGATTCGGATTTGGGA	0.438													24	75					0	0	0.003954	0	0
SCN2A	6326	broad.mit.edu	37	2	166210824	166210824	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:166210824C>T	uc002udc.2	+	17	3332	c.3042C>T	c.(3040-3042)ATC>ATT	p.I1014I	SCN2A_uc002udd.2_Silent_p.I1014I|SCN2A_uc002ude.2_Silent_p.I1014I	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1014					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AGAAAGGAATCGATTTTGTTA	0.348													24	46					0	0	0.002780	0	0
SCN2A	6326	broad.mit.edu	37	2	166245738	166245738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:166245738G>A	uc002udc.2	+	27	5712	c.5422G>A	c.(5422-5424)GAT>AAT	p.D1808N	SCN2A_uc002udd.2_Missense_Mutation_p.D1808N|SCN2A_uc002ude.2_Missense_Mutation_p.D1808N	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1808	IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GTTTGATCCCGATGCGACCCA	0.458													25	48					0	0	0.004656	0	0
SCN1A	6323	broad.mit.edu	37	2	166904164	166904164	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:166904164C>T	uc010zcz.1	-	8	1161	c.1143G>A	c.(1141-1143)CAG>CAA	p.Q381Q	SCN1A_uc002udo.3_Silent_p.Q250Q|SCN1A_uc010fpk.2_Silent_p.Q250Q	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	381	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCCAGAAGTCCTGAGTCATTA	0.358													17	52					0	0	0.004007	0	0
SCN1A	6323	broad.mit.edu	37	2	166929996	166929996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:166929996C>T	uc010zcz.1	-	1	154	c.136G>A	c.(136-138)GAA>AAA	p.E46K		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	46						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GGGCCATTTTCGTCGTCATCT	0.448													37	93					0	0	0.006999	0	0
XIRP2	129446	broad.mit.edu	37	2	168107877	168107877	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:168107877C>T	uc002udx.2	+	8	9993	c.9975C>T	c.(9973-9975)TTC>TTT	p.F3325F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.F3150F|XIRP2_uc010fpq.2_Silent_p.F3103F|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3150					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CTGAAAATTTCGTGAATGACC	0.448													14	39					0	0	0.002450	0	0
LASS6	253782	broad.mit.edu	37	2	169487543	169487543	+	Silent	SNP	C	T	T	rs146884858		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:169487543C>T	uc002ueb.1	+	4	580	c.456C>T	c.(454-456)TTC>TTT	p.F152F	LASS6_uc002uec.1_Silent_p.F152F	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	152	Cytoplasmic (Potential).|TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity	p.F152F(1)		skin(1)	1						GAGTCAGATTCCTGAAAAAGG	0.294													17	38					0	0	0.008871	0	0
SPC25	57405	broad.mit.edu	37	2	169733823	169733823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:169733823C>T	uc002uel.2	-	4	402	c.271G>A	c.(271-273)GGC>AGC	p.G91S		NM_020675	NP_065726	Q9HBM1	SPC25_HUMAN	spindle pole body component 25	91	Potential.|Interaction with the N-terminus of SPBC24.				cell division|chromosome segregation|mitotic prometaphase|mitotic spindle organization	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			central_nervous_system(1)	1						TGCTTTTTGCCTTTTACTTCA	0.338													13	37					0	0	0.001368	0	0
HOXD13	3239	broad.mit.edu	37	2	176959406	176959406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:176959406G>A	uc002ukf.1	+	2	1067	c.980G>A	c.(979-981)CGA>CAA	p.R327Q		NM_000523	NP_000514	P35453	HXD13_HUMAN	homeobox D13	327	Homeobox.				skeletal system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0526)|READ - Rectum adenocarcinoma(9;0.0678)		TTTCAGAACCGAAGAGTGAAG	0.468			T	NUP98	AML*								9	26					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179398780	179398780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179398780C>T	uc010zfg.1	-	307	95082	c.94858G>A	c.(94858-94860)GAA>AAA	p.E31620K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25315K|TTN_uc010zfi.1_Missense_Mutation_p.E25248K|TTN_uc010zfj.1_Missense_Mutation_p.E25123K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32547							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTCCATCTTCGTAGGTGATT	0.398													18	27					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179494052	179494052	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179494052C>T	uc010zfg.1	-	189	36920	c.36696G>A	c.(36694-36696)GGG>GGA	p.G12232G	TTN_uc010zfh.1_Silent_p.G5927G|TTN_uc010zfi.1_Silent_p.G5860G|TTN_uc010zfj.1_Silent_p.G5735G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13159							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTAGTTTCTTCCCTTTGAGAT	0.478													9	16					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179576943	179576943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179576943G>A	uc010zfg.1	-	93	24106	c.23882C>T	c.(23881-23883)CCG>CTG	p.P7961L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P4622L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8888							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACAAAATACGGTGGTTCTGC	0.448													15	53					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179579150	179579150	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179579150C>T	uc010zfg.1	-	88	22843	c.22619G>A	c.(22618-22620)TGG>TAG	p.W7540*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.W4201*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8467							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATAAGAAATCCATATGTTGTC	0.408													12	26					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179582050	179582050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179582050C>T	uc010zfg.1	-	85	21903	c.21679G>A	c.(21679-21681)GAA>AAA	p.E7227K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E3888K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8154							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTACCACTTTCTCCAAGAGCA	0.408													15	33					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179599705	179599705	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179599705G>A	uc010zfg.1	-	48	11438	c.11214C>T	c.(11212-11214)TCC>TCT	p.S3738S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S399S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4665							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCACGAAGGATGGTGGCT	0.423													3	7					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179621414	179621414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179621414C>T	uc010zfh.1	-	44	10500	c.10276G>A	c.(10276-10278)GAA>AAA	p.E3426K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3451							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTTAATTTCCTTTTGAGAT	0.408													16	33					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179639101	179639101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179639101C>T	uc010zfg.1	-	30	7114	c.6890G>A	c.(6889-6891)GGA>GAA	p.G2297E	TTN_uc010zfh.1_Missense_Mutation_p.G2251E|TTN_uc010zfi.1_Missense_Mutation_p.G2251E|TTN_uc010zfj.1_Missense_Mutation_p.G2251E|TTN_uc002unb.2_Missense_Mutation_p.G2297E|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2297							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACCATTTTCCTTCTATATT	0.393													19	56					0	0	0.010504	0	0
TTN	7273	broad.mit.edu	37	2	179640203	179640203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179640203C>T	uc010zfg.1	-	28	6612	c.6388G>A	c.(6388-6390)GAA>AAA	p.E2130K	TTN_uc010zfh.1_Missense_Mutation_p.E2084K|TTN_uc010zfi.1_Missense_Mutation_p.E2084K|TTN_uc010zfj.1_Missense_Mutation_p.E2084K|TTN_uc002unb.2_Missense_Mutation_p.E2130K|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2130							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACATTGTCTTCGGGCCAGTAC	0.483													10	26					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179642167	179642167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179642167G>A	uc010zfg.1	-	26	4849	c.4625C>T	c.(4624-4626)TCA>TTA	p.S1542L	TTN_uc010zfh.1_Missense_Mutation_p.S1496L|TTN_uc010zfi.1_Missense_Mutation_p.S1496L|TTN_uc010zfj.1_Missense_Mutation_p.S1496L|TTN_uc002unb.2_Missense_Mutation_p.S1542L|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1542							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAAATCACTGAAATTGAAGA	0.383													8	10					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179643697	179643697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179643697C>T	uc010zfg.1	-	24	4336	c.4112G>A	c.(4111-4113)GGA>GAA	p.G1371E	TTN_uc010zfh.1_Missense_Mutation_p.G1325E|TTN_uc010zfi.1_Missense_Mutation_p.G1325E|TTN_uc010zfj.1_Missense_Mutation_p.G1325E|TTN_uc002unb.2_Missense_Mutation_p.G1371E|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1371							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTGCATTTCCTTTAATATT	0.448													9	24					0	0	0.004482	0	0
CCDC141	285025	broad.mit.edu	37	2	179736919	179736919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:179736919C>T	uc002unf.1	-	3	352	c.295G>A	c.(295-297)GCC>ACC	p.A99T		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	99	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CTTTCCGTGGCTTTAAGCTGC	0.438													8	23					0	0	0.003080	0	0
NCKAP1	10787	broad.mit.edu	37	2	183859598	183859598	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:183859598G>A	uc002upc.2	-	8	1161	c.759C>T	c.(757-759)CTC>CTT	p.L253L	NCKAP1_uc002upb.2_Silent_p.L259L	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	253					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			CATCCAAAGAGAGGTATTCAC	0.343													24	69					0	0	0.003330	0	0
COL5A2	1290	broad.mit.edu	37	2	189962046	189962046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:189962046C>T	uc002uqk.2	-	6	688	c.413G>A	c.(412-414)GGA>GAA	p.G138E		NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	138					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TCCCTGTGATCCTGGAGGTCC	0.408													9	24					0	0	0.008291	0	0
SDPR	8436	broad.mit.edu	37	2	192701092	192701092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:192701092G>A	uc002utb.2	-	2	1165	c.835C>T	c.(835-837)CAC>TAC	p.H279Y		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	279						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	ATTTTCTGGTGATTTGACGTG	0.448													40	98					0	0	0.009718	0	0
TMEFF2	23671	broad.mit.edu	37	2	192863794	192863794	+	Missense_Mutation	SNP	C	T	T	rs149067350		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:192863794C>T	uc002utc.2	-	6	1071	c.677G>A	c.(676-678)CGA>CAA	p.R226Q		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	226	Kazal-like 2.|Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			ACCTTGACATCGACCCAAAGA	0.368													16	51					0	0	0.004990	0	0
DNAH7	56171	broad.mit.edu	37	2	196749415	196749415	+	Missense_Mutation	SNP	C	T	T	rs13034775		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:196749415C>T	uc002utj.3	-	35	5758	c.5657G>A	c.(5656-5658)CGA>CAA	p.R1886Q		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1886					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AAACGTATTTCGAGTTCGATC	0.358													10	28					0	0	0.008291	0	0
DNAH7	56171	broad.mit.edu	37	2	196891521	196891521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:196891521C>T	uc002utj.3	-	7	731	c.630G>A	c.(628-630)ATG>ATA	p.M210I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	210	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AATCCTCTCTCATTTCATCAG	0.328													3	15					0	0	0.009096	0	0
MARS2	92935	broad.mit.edu	37	2	198570826	198570826	+	Missense_Mutation	SNP	A	G	G	rs150082953		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:198570826A>G	uc002uuq.2	+	1	740	c.697A>G	c.(697-699)ATC>GTC	p.I233V	uc002uup.2_Intron	NM_138395	NP_612404	Q96GW9	SYMM_HUMAN	methionine-tRNA synthetase 2 precursor	233					methionyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|methionine-tRNA ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					L-Methionine(DB00134)	CCCTCAGGCGATCACCCCCGA	0.587													12	32					0	0	0.001368	0	0
BZW1	9689	broad.mit.edu	37	2	201681923	201681923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:201681923C>T	uc010zhg.1	+	6	645	c.593C>T	c.(592-594)TCC>TTC	p.S198F	BZW1_uc002uwc.2_Missense_Mutation_p.S166F|BZW1_uc010zhh.1_Missense_Mutation_p.S166F	NM_014670	NP_055485	Q7L1Q6	BZW1_HUMAN	basic leucine zipper and W2 domains 1	166					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	protein binding				0						CTTAATGCATCCATTCTTAAT	0.413													14	43					0	0	0.002450	0	0
CASP10	843	broad.mit.edu	37	2	202073798	202073798	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:202073798C>T	uc002uxl.1	+	9	1346	c.928C>T	c.(928-930)CTG>TTG	p.L310L	CASP10_uc002uxj.1_Silent_p.L310L|CASP10_uc002uxk.1_Silent_p.L267L|CASP10_uc010fta.1_Silent_p.L243L|CASP10_uc002uxm.1_Silent_p.L267L|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	310					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						AACAGAGATCCTGAGTCATGT	0.269													14	21					0	0	0.001855	0	0
ALS2	57679	broad.mit.edu	37	2	202593243	202593243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:202593243G>A	uc002uyo.2	-	15	3189	c.2833C>T	c.(2833-2835)CAT>TAT	p.H945Y	ALS2_uc002uyp.3_Missense_Mutation_p.H945Y|ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	945	PH.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						ACCTGGGCATGGACCAGGGCA	0.463													32	58					0	0	0.004289	0	0
NOP58	51602	broad.mit.edu	37	2	203149091	203149091	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:203149091C>T	uc002uzb.2	+	5	471	c.321C>T	c.(319-321)ATC>ATT	p.I107I	NOP58_uc010zhv.1_Silent_p.I107I	NM_015934	NP_057018	Q9Y2X3	NOP58_HUMAN	NOP58 ribonucleoprotein homolog	107					cell growth|rRNA processing|snRNP protein import into nucleus	box C/D snoRNP complex|Cajal body|cytoplasm|pre-snoRNP complex	protein binding|snoRNA binding				0						TCAGTTGTATCCATAGTCCTG	0.323													7	10					0	0	0.001984	0	0
WDR12	55759	broad.mit.edu	37	2	203762097	203762097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:203762097G>A	uc002uzl.2	-	5	1130	c.380C>T	c.(379-381)TCC>TTC	p.S127F	WDR12_uc010ftt.2_Missense_Mutation_p.S127F	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	127	Sufficient for nucleolar localization.|WD 1.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						TCCTTCCAAGGACCAGATCCG	0.378													108	252					0	0	0.003610	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175466	207175466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:207175466G>A	uc002vbp.2	+	5	6464	c.6214G>A	c.(6214-6216)GAG>AAG	p.E2072K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2072							nucleic acid binding|zinc ion binding			ovary(3)	3						AATAGTACCAGAGTTTGAGAG	0.378													11	15					0	0	0.000978	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209184997	209184997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:209184997C>T	uc002vcz.2	+	17	2262	c.2104C>T	c.(2104-2106)CCC>TCC	p.P702S	PIKFYVE_uc010fun.1_Missense_Mutation_p.P383S|PIKFYVE_uc002vcy.1_Missense_Mutation_p.P646S	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	702					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						TATTAAAAACCCCAAAATTCT	0.303													11	54					0	0	0.003163	0	0
CPS1	1373	broad.mit.edu	37	2	211447396	211447396	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:211447396C>A	uc002vee.3	+	6	716	c.584C>A	c.(583-585)CCA>CAA	p.P195Q	CPS1_uc010fur.2_Missense_Mutation_p.P201Q	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	195	Anthranilate phosphoribosyltransferase homolog.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TTTGTGGATCCAAATAAACAG	0.338													10	39					0.00185496	0.00188226	0.001855	1	0
SPAG16	79582	broad.mit.edu	37	2	214727214	214727214	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:214727214C>G	uc002veq.2	+	11	1168	c.1076C>G	c.(1075-1077)TCC>TGC	p.S359C	SPAG16_uc010fuz.1_Missense_Mutation_p.S210C|SPAG16_uc002ver.2_Missense_Mutation_p.S305C|SPAG16_uc010zjk.1_Missense_Mutation_p.S265C	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	359	WD 1.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		CGCAGTGTCTCCATGCAACCC	0.448													15	37					0	0	0.003163	0	0
ABCA12	26154	broad.mit.edu	37	2	215845258	215845258	+	Silent	SNP	G	A	A	rs138177557	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:215845258G>A	uc002vew.2	-	31	4909	c.4689C>T	c.(4687-4689)TAC>TAT	p.Y1563Y	ABCA12_uc002vev.2_Silent_p.Y1245Y|ABCA12_uc010zjn.1_Silent_p.Y490Y	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1563	ABC transporter 1.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTTCCTTGAGGTAAAATGGGG	0.493													23	45					0	0	0.002299	0	0
ABCA12	26154	broad.mit.edu	37	2	215884434	215884434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:215884434C>T	uc002vew.2	-	12	1594	c.1374G>A	c.(1372-1374)ATG>ATA	p.M458I	ABCA12_uc002vev.2_Missense_Mutation_p.M140I|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	458					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TCCCAAAGCTCATATCAGAGA	0.463													9	17					0	0	0.004482	0	0
WNT10A	80326	broad.mit.edu	37	2	219746962	219746962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:219746962C>T	uc002vjd.1	+	2	656	c.193C>T	c.(193-195)CCA>TCA	p.P65S		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	65					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTAACATTGCCAGGCCTGAG	0.607													17	32					0	0	0.004990	0	0
CCDC108	255101	broad.mit.edu	37	2	219870227	219870227	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:219870227G>A	uc002vjl.1	-	32	5064	c.4980C>T	c.(4978-4980)TCC>TCT	p.S1660S		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1660						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACTTGTTAGGGGATTTTTCCT	0.552													14	49					0	0	0.001855	0	0
MOGAT1	116255	broad.mit.edu	37	2	223554078	223554078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:223554078C>T	uc010fws.1	+	3	416	c.368C>T	c.(367-369)TCT>TTT	p.S123F	MOGAT1_uc010fwt.1_Missense_Mutation_p.S83F	NM_058165	NP_477513	Q96PD6	MOGT1_HUMAN	monoacylglycerol O-acyltransferase 1	123					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			breast(1)	1		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;2.06e-07)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0105)		GGGAATTTTTCTGTAAATTAT	0.408													24	22					0	0	0.003954	0	0
COL4A3	1285	broad.mit.edu	37	2	228137770	228137771	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:228137770_228137771GG>AA	uc002vom.1	+	26	2026_2027	c.1864_1865GG>AA	c.(1864-1866)GGA>AAA	p.G622K	COL4A3_uc002von.1_Missense_Mutation_p.G622K|COL4A3_uc002voo.1_Missense_Mutation_p.G622K|COL4A3_uc002vop.1_Missense_Mutation_p.G622K|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	622	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		CGGACCCCAAGGAGAACCTGGT	0.624													11	35					0	0	0.004672	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884867	228884867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:228884867C>T	uc002vpq.2	-	7	750	c.703G>A	c.(703-705)GAA>AAA	p.E235K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E235K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E235K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	235						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTTATATTTTCATAATCTAGT	0.343													27	55					0	0	0.006320	0	0
DNER	92737	broad.mit.edu	37	2	230282920	230282920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:230282920C>T	uc002vpv.2	-	9	1660	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	505	EGF-like 8; calcium-binding (Potential).|Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		TCATTATATTCCTCCTCACAG	0.532													7	33					0	0	0.003080	0	0
GPR55	9290	broad.mit.edu	37	2	231775585	231775585	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:231775585G>A	uc002vrg.2	-	2	286	c.93C>T	c.(91-93)TTC>TTT	p.F31F	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Silent_p.F31F	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	31	Helical; Name=1; (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		GGCCCAGGACGAAGGTGGGGA	0.532													20	35					0	0	0.010504	0	0
INPP5D	3635	broad.mit.edu	37	2	233944049	233944049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:233944049C>T	uc010zmo.1	+	2	292	c.139C>T	c.(139-141)CGG>TGG	p.R47W	INPP5D_uc010zmp.1_Missense_Mutation_p.R47W	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	47	SH2.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TTTCAGGTATCGGAATTGCGT	0.398													7	14					0	0	0.003080	0	0
INPP5D	3635	broad.mit.edu	37	2	234106748	234106748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:234106748C>T	uc010zmo.1	+	24	2854	c.2701C>T	c.(2701-2703)CCG>TCG	p.P901S	INPP5D_uc010zmp.1_Missense_Mutation_p.P900S	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	901					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CAGGGCCCCTCCGTGCAGTGG	0.597													4	13					0	0	0.009096	0	0
GBX2	2637	broad.mit.edu	37	2	237076349	237076349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:237076349C>T	uc002vvw.1	-	1	304	c.266G>A	c.(265-267)GGC>GAC	p.G89D	GBX2_uc010zng.1_Missense_Mutation_p.G79D	NM_001485	NP_001476	P52951	GBX2_HUMAN	gastrulation brain homeo box 2	89				LPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSA SPQHQEAAAARKFAPQPLPGGGNFDKAEALQADAEDGKGFL AKEGSLLAFSAAETVQASLVGAVRGQGKDESKVEDDPKG -> CRPHTLTTRSPACPQASAPAWRRAWRSPLRSWPRSPAA SPRRPSTRRRQRPASSRRSRCPAAVTSTRRRRCRLTRRTAK ASWPKRARCSPSPRPRRCRLRSSGLSEGKGKTSQRWKTTRS (in Ref. 1; AAC03241).		nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Breast(86;0.00235)|Renal(207;0.00339)|all_hematologic(139;0.00357)|all_lung(227;0.0616)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|Lung NSC(271;0.179)		Epithelial(121;4.5e-25)|OV - Ovarian serous cystadenocarcinoma(60;5.16e-11)|BRCA - Breast invasive adenocarcinoma(100;3.4e-05)|Lung(119;0.00195)|LUSC - Lung squamous cell carcinoma(224;0.00471)		GGAGCAGAAGCCTGTGGGCAG	0.657													9	11					0	0	0.000978	0	0
COL6A3	1293	broad.mit.edu	37	2	238275439	238275439	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:238275439G>A	uc002vwl.2	-	11	5676	c.5391C>T	c.(5389-5391)TTC>TTT	p.F1797F	COL6A3_uc002vwo.2_Silent_p.F1591F|COL6A3_uc010znj.1_Silent_p.F1190F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1797	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGCCCACGCGGAACGCTGTGG	0.547													10	31					0	0	0.006214	0	0
KIF1A	547	broad.mit.edu	37	2	241682373	241682373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr2:241682373G>A	uc002vzy.2	-	32	3456	c.3310C>T	c.(3310-3312)CCT>TCT	p.P1104S	KIF1A_uc010fzk.2_Missense_Mutation_p.P1205S|KIF1A_uc002vzz.1_Missense_Mutation_p.P1205S	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1104					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		ATGACCCGAGGGAAGTGGCGG	0.662													4	10					0	0	0.009096	0	0
ANGPT4	51378	broad.mit.edu	37	20	854937	854937	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:854937C>T	uc002wei.2	-	8	1444	c.1341G>A	c.(1339-1341)GTG>GTA	p.V447V	ANGPT4_uc010zpn.1_Intron	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	447	Fibrinogen C-terminal.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						CTCCAGACATCACTTGGGCAC	0.617													22	40					0	0	0.002780	0	0
ANGPT4	51378	broad.mit.edu	37	20	865741	865741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:865741C>T	uc002wei.2	-	4	918	c.815G>A	c.(814-816)AGG>AAG	p.R272K	ANGPT4_uc010zpn.1_Missense_Mutation_p.R266K	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	272					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						GGCGTTAGCCCTTTCTTGCAC	0.682													3	13					0	0	0.004672	0	0
SIRPB1	10326	broad.mit.edu	37	20	1559235	1559235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:1559235G>A	uc010gai.2	-	2	281	c.182C>T	c.(181-183)CCT>CTT	p.P61L	SIRPB1_uc002wfk.3_Missense_Mutation_p.P61L	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	61	Extracellular (Potential).|Ig-like V-type.				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GGGCCCCACAGGGATCAGGGA	0.537													23	56					0	0	0.002780	0	0
C20orf141	128653	broad.mit.edu	37	20	2796252	2796252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:2796252G>A	uc010gat.2	+	3	412	c.329G>A	c.(328-330)GGT>GAT	p.G110D	C20orf141_uc002wgv.1_Intron|C20orf141_uc002wgw.2_Missense_Mutation_p.G110D|uc002wgx.1_5'Flank|uc002wgy.1_5'Flank	NM_080739	NP_542777	Q9NUB4	CT141_HUMAN	hypothetical protein LOC128653	110	Leu-rich.					integral to membrane					0						GCCGGTGAAGGTCCTGGACAG	0.627													7	19					0	0	0.001984	0	0
ATRN	8455	broad.mit.edu	37	20	3559287	3559287	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:3559287T>C	uc002wim.2	+	15	2502	c.2412T>C	c.(2410-2412)ACT>ACC	p.T804T	ATRN_uc002wil.2_Silent_p.T804T	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	804	Extracellular (Potential).|C-type lectin.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						AAATTACTACTGCCAAGGAGA	0.363													17	38					0	0	0.010504	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3679916	3679916	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:3679916G>A	uc002wja.2	-	7	1719	c.1719C>T	c.(1717-1719)TAC>TAT	p.Y573Y	SIGLEC1_uc002wiz.3_Silent_p.Y573Y	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	573	Ig-like C2-type 5.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CCCGGCAGTGGTATGAGCCGG	0.677													8	10					0	0	0.004482	0	0
PANK2	80025	broad.mit.edu	37	20	3891387	3891387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:3891387C>T	uc002wkc.2	+	3	1151	c.1145C>T	c.(1144-1146)CCG>CTG	p.P382L	PANK2_uc002wkb.2_Missense_Mutation_p.P91L|PANK2_uc010gbd.1_RNA|PANK2_uc002wkd.2_RNA|PANK2_uc002wke.2_Missense_Mutation_p.P91L|PANK2_uc002wkf.2_5'UTR	NM_153638	NP_705902	Q9BZ23	PANK2_HUMAN	pantothenate kinase 2 isoform 1 preproprotein	382					cell death|coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial intermembrane space|nucleus	ATP binding|pantothenate kinase activity|protein binding				0						TTGAAAAATCCGTATCCTCTG	0.403													13	30					0	0	0.001368	0	0
SMOX	54498	broad.mit.edu	37	20	4163123	4163123	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:4163123T>G	uc002wkm.1	+	5	1198	c.997T>G	c.(997-999)TCG>GCG	p.S333A	SMOX_uc002wkk.1_Intron|SMOX_uc002wkl.1_Intron|SMOX_uc002wkn.1_Intron|SMOX_uc002wkp.2_Missense_Mutation_p.S333A|SMOX_uc010zqo.1_Intron|SMOX_uc002wko.1_Missense_Mutation_p.S333A	NM_175839	NP_787033	Q9NWM0	SMOX_HUMAN	spermine oxidase isoform 1	333					polyamine biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	polyamine oxidase activity			breast(1)	1					Spermine(DB00127)	TGTGACCGTGTCGCTAGGTGT	0.637													17	34					0	0	0.007413	0	0
PROKR2	128674	broad.mit.edu	37	20	5294809	5294809	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:5294809G>A	uc010zqw.1	-	1	207	c.207C>T	c.(205-207)ATC>ATT	p.I69I	PROKR2_uc010zqx.1_Silent_p.I69I|PROKR2_uc010zqy.1_Silent_p.I69I|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	69	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CAAAGTTACCGATGCCGCAGA	0.542										HNSCC(71;0.22)			32	47					0	0	0.002096	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029693	13029693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:13029693G>A	uc002wod.1	+	2	507	c.218G>A	c.(217-219)GGA>GAA	p.G73E	SPTLC3_uc002woc.2_Missense_Mutation_p.G73E	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	73	Helical; (Potential).				sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	TATGGAATTGGAACCCTGTTT	0.398													28	44					0	0	0.006320	0	0
OTOR	56914	broad.mit.edu	37	20	16730641	16730641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:16730641G>A	uc002wpj.2	+	3	393	c.349G>A	c.(349-351)GAA>AAA	p.E117K	OTOR_uc002wpk.2_RNA	NM_020157	NP_064542	Q9NRC9	OTOR_HUMAN	otoraplin precursor	117					sensory perception of sound	extracellular region				ovary(1)|central_nervous_system(1)	2						AGCTACCAAGGAAGTTCCCAC	0.488													8	18					0	0	0.003080	0	0
CRNKL1	51340	broad.mit.edu	37	20	20031172	20031172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:20031172G>A	uc002wrs.2	-	3	661	c.629C>T	c.(628-630)CCT>CTT	p.P210L	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Missense_Mutation_p.P198L	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	210	Poly-Pro.				spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						CTTCTGTTGAGGTGGAGGTGG	0.393													11	16					0	0	0.008291	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033105	20033105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:20033105G>A	uc002wrs.2	-	2	397	c.365C>T	c.(364-366)CCG>CTG	p.P122L	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Missense_Mutation_p.P110L	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	122					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						AACCGGAAGCGGAACTTGCAG	0.597													19	43					0	0	0.002780	0	0
DEFB118	117285	broad.mit.edu	37	20	29960723	29960723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:29960723G>A	uc002wvr.2	+	2	148	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	41					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TGCAAAGATGGAGAAGCAGTG	0.433													15	22					0	0	0.004990	0	0
HM13	81502	broad.mit.edu	37	20	30142557	30142557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:30142557C>T	uc002wwe.2	+	8	847	c.733C>T	c.(733-735)CCC>TCC	p.P245S	HM13_uc002wwc.2_Missense_Mutation_p.P245S|HM13_uc002wwd.2_Missense_Mutation_p.P245S|HM13_uc002wwf.2_Missense_Mutation_p.P121S|HM13_uc010gdu.2_Missense_Mutation_p.P121S	NM_030789	NP_110416	Q8TCT9	HM13_HUMAN	minor histocompatibility antigen 13 isoform 1	245	Lumenal (Potential).				membrane protein proteolysis	cell surface|endoplasmic reticulum membrane|integral to membrane|plasma membrane	aspartic-type endopeptidase activity|protein binding			breast(1)	1	all_cancers(5;3.44e-05)|Lung NSC(7;4.38e-06)|all_lung(7;7.65e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		all cancers(5;0.000479)|Colorectal(19;0.00202)|COAD - Colon adenocarcinoma(19;0.0264)			AGTGGTGTTTCCCCAGGATCT	0.443													15	33					0	0	0.004007	0	0
MYLK2	85366	broad.mit.edu	37	20	30407947	30407947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:30407947C>T	uc002wwq.2	+	3	173	c.71C>T	c.(70-72)CCC>CTC	p.P24L		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	24					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CCTAAAGGTCCCACAGGTGAA	0.602													15	31					0	0	0.004007	0	0
DNMT3B	1789	broad.mit.edu	37	20	31374317	31374317	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:31374317C>T	uc002wyc.2	+	5	637	c.316C>T	c.(316-318)CGA>TGA	p.R106*	DNMT3B_uc010ztx.1_Intron|DNMT3B_uc010zty.1_Intron|DNMT3B_uc002wyd.2_Nonsense_Mutation_p.R106*|DNMT3B_uc002wye.2_Nonsense_Mutation_p.R106*|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Intron|DNMT3B_uc010zua.1_Intron|DNMT3B_uc002wyf.2_Nonsense_Mutation_p.R118*	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	106	Interaction with DNMT1 and DNMT3A.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						GGTCCGAACTCGAAATAACAA	0.627													11	46					0	0	0.000978	0	0
C20orf71	128861	broad.mit.edu	37	20	31805433	31805433	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:31805433C>T	uc002wyr.2	+	1	299	c.91C>T	c.(91-93)CAA>TAA	p.Q31*	C20orf71_uc002wys.2_Nonsense_Mutation_p.Q31*	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium	31						extracellular region	lipid binding			ovary(1)|skin(1)	2						TGGCCTGGCCCAAGCCCACAG	0.612													9	27					0	0	0.006214	0	0
GGT7	2686	broad.mit.edu	37	20	33450629	33450629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:33450629G>A	uc002xay.2	-	3	588	c.545C>T	c.(544-546)TCT>TTT	p.S182F	GGT7_uc002xaz.1_Missense_Mutation_p.S199F|GGT7_uc002xba.1_Missense_Mutation_p.S182F	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	182	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						GCCCAGGCCAGAACTGTGTGG	0.592													22	39					0	0	0.002299	0	0
MYH7B	57644	broad.mit.edu	37	20	33589805	33589805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:33589805G>A	uc002xbi.1	+	42	5949	c.5857G>A	c.(5857-5859)GAT>AAT	p.D1953N		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1911	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GCACGAGCTGGATGATGCGGA	0.667													14	26					0	0	0.002450	0	0
GDF5	8200	broad.mit.edu	37	20	34025183	34025183	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:34025183G>A	uc002xck.1	-	1	845	c.526C>T	c.(526-528)CTG>TTG	p.L176L	GDF5_uc010gfc.1_Silent_p.L176L|GDF5_uc010zvc.1_Silent_p.L176L	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	176					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			GTCCTGTACAGCGAGAGCATG	0.612													32	54					0	0	0.002836	0	0
CPNE1	8904	broad.mit.edu	37	20	34215288	34215288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:34215288G>A	uc002xdf.2	-	16	1513	c.1150C>T	c.(1150-1152)CGC>TGC	p.R384C	CPNE1_uc002xdc.2_Missense_Mutation_p.R46C|CPNE1_uc010zvj.1_Missense_Mutation_p.R389C|CPNE1_uc002xde.2_Missense_Mutation_p.R360C|CPNE1_uc002xdg.2_Missense_Mutation_p.R384C|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Missense_Mutation_p.R384C|CPNE1_uc002xdi.2_Missense_Mutation_p.R384C|CPNE1_uc002xdj.2_Missense_Mutation_p.R384C|CPNE1_uc002xdk.2_Missense_Mutation_p.R384C|CPNE1_uc002xdl.2_Missense_Mutation_p.R384C|CPNE1_uc002xdm.2_Missense_Mutation_p.R384C	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	384	VWFA.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CCATAGAGGCGAACTTGGGGC	0.577													22	35					0	0	0.005443	0	0
NFS1	9054	broad.mit.edu	37	20	34257606	34257606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:34257606G>A	uc002xdw.1	-	13	1376	c.1312C>T	c.(1312-1314)CCT>TCT	p.P438S	CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|NFS1_uc002xdt.1_Missense_Mutation_p.P378S|NFS1_uc002xdu.1_Missense_Mutation_p.P378S|NFS1_uc002xdv.1_RNA|NFS1_uc010zvk.1_Missense_Mutation_p.P236S|NFS1_uc010zvl.1_Missense_Mutation_p.P387S	NM_021100	NP_066923	Q9Y697	NFS1_HUMAN	NFS1 nitrogen fixation 1 precursor	438					cysteine metabolic process|iron incorporation into metallo-sulfur cluster|Mo-molybdopterin cofactor biosynthetic process|protein complex assembly|water-soluble vitamin metabolic process	cytosol|mitochondrial matrix|nucleus	cysteine desulfurase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.0886)		L-Alanine(DB00160)|L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	TCCCAGAGAGGGCTGCCAAAG	0.532													16	54					0	0	0.006122	0	0
PLCG1	5335	broad.mit.edu	37	20	39792111	39792111	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:39792111C>T	uc002xjp.1	+	9	1004	c.883C>T	c.(883-885)CTG>TTG	p.L295L	PLCG1_uc002xjo.1_Silent_p.L295L|PLCG1_uc010zwe.1_5'Flank|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	295					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				ATACTTCTTCCTGGATGAGGT	0.567													11	27					0	0	0.000978	0	0
PTPRT	11122	broad.mit.edu	37	20	40733211	40733211	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:40733211G>A	uc002xkg.2	-	25	3722	c.3538C>T	c.(3538-3540)CAG>TAG	p.Q1180*	PTPRT_uc010ggj.2_Nonsense_Mutation_p.Q1199*|PTPRT_uc010ggi.2_Nonsense_Mutation_p.Q383*	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1180	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCTCATACCTGAAATTCATCT	0.328													19	42					0	0	0.008871	0	0
SEMG2	6407	broad.mit.edu	37	20	43850392	43850392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:43850392C>T	uc010ggz.2	+	2	176	c.119C>T	c.(118-120)CCA>CTA	p.P40L	SEMG2_uc002xnk.2_Missense_Mutation_p.P40L|SEMG2_uc002xnl.2_Missense_Mutation_p.P40L	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	40					sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				TCCCAATTTCCACATGGACAA	0.388													11	45					0	0	0.001368	0	0
ZNF335	63925	broad.mit.edu	37	20	44581339	44581339	+	Silent	SNP	G	A	A	rs143040607		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:44581339G>A	uc002xqw.2	-	19	2835	c.2712C>T	c.(2710-2712)CCC>CCT	p.P904P	ZNF335_uc002xqv.2_Silent_p.P16P|ZNF335_uc010zxk.1_Silent_p.P749P	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	904					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				CCTCTCCTGCGGGCTCCTCGC	0.572													11	40					0	0	0.000978	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354227	45354227	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:45354227C>T	uc002xsl.2	+	2	649	c.552C>T	c.(550-552)TTC>TTT	p.F184F		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	184	Helical; Name=6; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GCCTCCTCTTCCTCCCTGCTG	0.627													15	40					0	0	0.002450	0	0
EYA2	2139	broad.mit.edu	37	20	45771711	45771711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:45771711C>T	uc002xsm.2	+	10	1276	c.902C>T	c.(901-903)TCC>TTC	p.S301F	EYA2_uc010ghp.2_Missense_Mutation_p.S301F|EYA2_uc002xsn.2_Missense_Mutation_p.S306F|EYA2_uc002xso.2_Missense_Mutation_p.S301F|EYA2_uc002xsp.2_Missense_Mutation_p.S301F|EYA2_uc002xsq.2_Intron	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	301					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				ACCACGACGTCCGTGCGCATT	0.493													16	24					0	0	0.004990	0	0
AURKA	6790	broad.mit.edu	37	20	54961538	54961538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:54961538G>A	uc002xxd.1	-	5	660	c.94C>T	c.(94-96)CCT>TCT	p.P32S	AURKA_uc002xxe.1_Missense_Mutation_p.P32S|AURKA_uc002xxf.1_Missense_Mutation_p.P32S|AURKA_uc002xxg.1_Missense_Mutation_p.P32S|AURKA_uc002xxh.1_Missense_Mutation_p.P32S|AURKA_uc002xxi.1_Missense_Mutation_p.P32S|AURKA_uc002xxj.1_Missense_Mutation_p.P32S|AURKA_uc002xxk.1_Missense_Mutation_p.P32S|AURKA_uc010zzd.1_RNA	NM_198433	NP_940835	O14965	AURKA_HUMAN	serine/threonine protein kinase 6	32					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|phosphatidylinositol-mediated signaling|regulation of protein stability|spindle organization	cytosol|nucleus|perinuclear region of cytoplasm|spindle microtubule|spindle pole centrosome	ATP binding|protein kinase binding|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(1)|large_intestine(1)|skin(1)	8			Colorectal(105;0.202)			TTCTGACAAGGAAATTGCTGA	0.443													15	39					0	0	0.002450	0	0
TFAP2C	7022	broad.mit.edu	37	20	55209280	55209280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:55209280G>A	uc002xya.2	+	5	1121	c.878G>A	c.(877-879)AGG>AAG	p.R293K	TFAP2C_uc010zzi.1_Missense_Mutation_p.R124K	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	293	H-S-H (helix-span-helix), dimerization.				cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			CCGGCCGGGAGGCGGAAAGCC	0.463													13	25					0	0	0.001368	0	0
ZNF831	128611	broad.mit.edu	37	20	57768850	57768850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:57768850C>T	uc002yan.2	+	1	2776	c.2776C>T	c.(2776-2778)CCT>TCT	p.P926S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	926						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ACCTCAGGCTCCTAGAGTGCT	0.642													10	26					0	0	0.008291	0	0
LAMA5	3911	broad.mit.edu	37	20	60897381	60897381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:60897381G>A	uc002ycq.2	-	47	6357	c.6290C>T	c.(6289-6291)CCC>CTC	p.P2097L		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2097	Laminin EGF-like 21.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCGGCACTGGGGTCCCATGGT	0.721													7	11					0	0	0.001984	0	0
C20orf200	253868	broad.mit.edu	37	20	61143809	61143809	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:61143809C>T	uc002ycz.1	-	3	530	c.39G>A	c.(37-39)GGG>GGA	p.G13G	C20orf200_uc002ycy.2_RNA	NM_152757	NP_689970			hypothetical protein LOC253868												0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;7.17e-06)			GTGGTGAACTCCCCTCGTGCG	0.667													23	84					0	0	0.002299	0	0
COL9A3	1299	broad.mit.edu	37	20	61461030	61461031	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:61461030_61461031CC>TT	uc002ydm.2	+	21	1107_1108	c.1104_1105CC>TT	c.(1102-1107)GTCCCT>GTTTCT	p.P369S		NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	369	Triple-helical region 3 (COL3).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					AGCCAGGCGTCCCTGTGAGTAT	0.658													4	17					0	0	0.004672	0	0
DPH3B	100132911	broad.mit.edu	37	20	61477138	61477138	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:61477138T>C	uc011aan.1	+	1	663	c.123T>C	c.(121-123)AAT>AAC	p.N41N	TCFL5_uc002ydo.2_Intron|TCFL5_uc002ydp.2_Intron	NM_080750	NP_542788	Q9H4G8	DPH3B_HUMAN	DPH3B, KTI11 homolog B	41	DPH-type.						metal ion binding				0						AGCTGGAGAATGGGGAAGGTG	0.478													4	6					0	0	0.009096	0	0
DIDO1	11083	broad.mit.edu	37	20	61511906	61511906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:61511906C>T	uc002ydr.1	-	16	5666	c.5402G>A	c.(5401-5403)GGA>GAA	p.G1801E	DIDO1_uc002yds.1_Missense_Mutation_p.G1801E	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1801	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTTCTGGGCTCCGAATCTGGC	0.622													39	92					0	0	0.008740	0	0
COL20A1	57642	broad.mit.edu	37	20	61939340	61939340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:61939340G>A	uc011aau.1	+	7	773	c.673G>A	c.(673-675)GGG>AGG	p.G225R	COL20A1_uc011aav.1_Missense_Mutation_p.G46R	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	225	VWFA.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					TCAGTACAGCGGGGATGCTCA	0.632													7	26					0	0	0.001984	0	0
PRIC285	85441	broad.mit.edu	37	20	62192982	62192983	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:62192982_62192983GG>AA	uc002yfm.2	-	13	7699_7700	c.6807_6808CC>TT	c.(6805-6810)CCCCGG>CCTTGG	p.R2270W	PRIC285_uc002yfl.1_Missense_Mutation_p.R1701W	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2270					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CTCCCCTCCCGGGGGCTCTTCC	0.658													30	60					0	0	0.004672	0	0
TCEA2	6919	broad.mit.edu	37	20	62699406	62699406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr20:62699406C>T	uc011abs.1	+	4	904	c.248C>T	c.(247-249)TCC>TTC	p.S83F	TCEA2_uc011abr.1_Missense_Mutation_p.S56F|TCEA2_uc010gkq.2_Missense_Mutation_p.S56F|TCEA2_uc010gks.2_Missense_Mutation_p.S83F|TCEA2_uc010gkt.2_Missense_Mutation_p.S56F|TCEA2_uc010gku.1_Intron	NM_003195	NP_003186	Q15560	TCEA2_HUMAN	transcription elongation factor A protein 2	83	TFIIS N-terminal.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	transcription elongation factor complex	DNA binding|protein binding|translation elongation factor activity|zinc ion binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					GCAGATGCTTCCGATGCCAAA	0.647													11	33					0	0	0.001855	0	0
RNF160	26046	broad.mit.edu	37	21	30304892	30304892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:30304892G>A	uc002ymr.2	-	28	5121	c.5108C>T	c.(5107-5109)CCA>CTA	p.P1703L		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	1657							ligase activity|zinc ion binding				0						TGAACCCAGTGGATAATTTGA	0.418													40	73					0	0	0.005524	0	0
KRTAP24-1	643803	broad.mit.edu	37	21	31655068	31655068	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:31655068G>A	uc002ynv.2	-	1	209	c.183C>T	c.(181-183)TGC>TGT	p.C61C		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	61						keratin filament	structural molecule activity				0						AGGATTCTTGGCAGTAATCCA	0.512													24	49					0	0	0.006320	0	0
DNAJC28	54943	broad.mit.edu	37	21	34860722	34860722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:34860722G>A	uc002yrv.2	-	2	1428	c.979C>T	c.(979-981)CAT>TAT	p.H327Y	DNAJC28_uc002yrw.2_Missense_Mutation_p.H327Y	NM_017833	NP_060303	Q9NX36	DJC28_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 28	327	Potential.			LIVPILTRQKVHFDAQKEIVRAQKIYETLIKTKEVTDRNPN NLDQGEGEKTPEIKKGFLNWMNLWKFIKIRSF -> CSHPD QAKSPF (in Ref. 2; BAA91185).			heat shock protein binding				0						GCATCAAAATGGACTTTTTGC	0.338													11	39					0	0	0.000978	0	0
DSCR10	259234	broad.mit.edu	37	21	39580464	39580464	+	RNA	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:39580464G>A	uc010gnt.1	+	3		c.586G>A				NR_027695				Homo sapiens DSCR10 mRNA, complete cds.												0						TTTCTGTGCAGAGCCATGCTC	0.547													51	159					0	0	0.003610	0	0
SH3BGR	6450	broad.mit.edu	37	21	40847107	40847107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:40847107C>T	uc002yya.2	+	3	521	c.467C>T	c.(466-468)TCC>TTC	p.S156F	SH3BGR_uc002yxz.2_Missense_Mutation_p.S45F	NM_007341	NP_031367	P55822	SH3BG_HUMAN	SH3-binding domain and glutamic acid-rich	156					protein complex assembly	cytosol	SH3 domain binding|SH3/SH2 adaptor activity				0		all_cancers(19;1.16e-23)|all_epithelial(19;1.22e-20)|Prostate(19;2.55e-06)|Breast(209;0.0133)		STAD - Stomach adenocarcinoma(101;0.00151)		ATTATTTATTCCTTCCTTGGT	0.373													5	21					0	0	0.001168	0	0
DSCAM	1826	broad.mit.edu	37	21	41414529	41414529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:41414529C>T	uc002yyq.1	-	32	5907	c.5455G>A	c.(5455-5457)GAA>AAA	p.E1819K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1819	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTGGCGTGTTCGTAGGCCCTG	0.527													19	38					0	0	0.007413	0	0
C2CD2	25966	broad.mit.edu	37	21	43338965	43338965	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:43338965C>T	uc002yzw.2	-	4	839	c.597G>A	c.(595-597)GAG>GAA	p.E199E	C2CD2_uc002yzu.2_Silent_p.E31E|C2CD2_uc002yzv.2_Silent_p.E44E|C2CD2_uc002yzx.1_Silent_p.E44E	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	199						cytosol|extracellular region|nucleus				ovary(1)	1						ACGGACTGACCTCCCCCAGTG	0.517													17	29					0	0	0.007413	0	0
PFKL	5211	broad.mit.edu	37	21	45732069	45732069	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:45732069C>T	uc002zel.2	+	4	378	c.319C>T	c.(319-321)CAG>TAG	p.Q107*	PFKL_uc002zek.2_Nonsense_Mutation_p.Q154*|PFKL_uc011afd.1_Nonsense_Mutation_p.Q154*	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	107					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		CAACCTGGTCCAGCACGGCAT	0.657													3	4					0	0	0.009096	0	0
TRPM2	7226	broad.mit.edu	37	21	45825123	45825123	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:45825123C>T	uc002zet.1	+	18	2850	c.2637C>T	c.(2635-2637)TTC>TTT	p.F879F	TRPM2_uc002zeu.1_Silent_p.F879F|TRPM2_uc002zew.1_Silent_p.F879F|TRPM2_uc010gpt.1_Silent_p.F879F|TRPM2_uc002zex.1_Silent_p.F665F|TRPM2_uc002zey.1_Silent_p.F392F	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	879	Helical; (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCTTGCTCTTCGTGGCAGGGC	0.622													15	36					0	0	0.006122	0	0
KRTAP12-1	353332	broad.mit.edu	37	21	46101760	46101760	+	Silent	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:46101760A>T	uc002zfv.2	-	1	319	c.279T>A	c.(277-279)CCT>CCA	p.P93P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181686	NP_859014	P59990	KR121_HUMAN	keratin associated protein 12-1	93	14.|14 X 5 AA approximate repeats.					keratin filament				skin(2)	2						AGCAGCAGGAAGGGGTGCTGC	0.622													9	40					0	0	0.004482	0	0
COL18A1	80781	broad.mit.edu	37	21	46900762	46900762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr21:46900762C>T	uc011afs.1	+	12	2867	c.2846C>T	c.(2845-2847)CCT>CTT	p.P949L	COL18A1_uc002zhg.2_Missense_Mutation_p.P534L|COL18A1_uc002zhi.2_Missense_Mutation_p.P714L	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	949	Triple-helical region 3 (COL3).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCCGGGTTTCCTGGCCTCCCG	0.711													9	9					0	0	0.000978	0	0
MICAL3	57553	broad.mit.edu	37	22	18300481	18300481	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:18300481G>T	uc002zng.3	-	26	5299	c.4946C>A	c.(4945-4947)TCC>TAC	p.S1649Y	MICAL3_uc011agl.1_Missense_Mutation_p.S1565Y|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1649						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GCGTGTGGGGGAGTCAGGCCG	0.711													9	17					1.33987e-11	1.37059e-11	0.008291	1	0
Unknown	0	broad.mit.edu	37	22	18844888	18844888	+	RNA	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:18844888A>G	uc002zoe.2	+	4		c.2142A>G			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GCTCACGGAAATACAGCTTCA	0.587													5	63					0	0	0.000602	0	0
CDC45	8318	broad.mit.edu	37	22	19495387	19495387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:19495387G>A	uc002zpr.2	+	12	1131	c.1055G>A	c.(1054-1056)GGG>GAG	p.G352E	CDC45_uc011agz.1_Missense_Mutation_p.G347E|CDC45_uc011aha.1_Missense_Mutation_p.G384E|CDC45_uc002zps.2_Missense_Mutation_p.G352E|CDC45_uc002zpt.2_Missense_Mutation_p.G306E	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	352					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						AATAAATTTGGGTAAACACAC	0.388													14	39					0	0	0.001855	0	0
PI4KA	5297	broad.mit.edu	37	22	21088121	21088122	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:21088121_21088122GG>AA	uc002zsz.3	-	35	4119_4120	c.3888_3889CC>TT	c.(3886-3891)ACCCTG>ACTTTG	p.1296_1297TL>TL	PI4KA_uc002zsy.3_Silent_p.106_107TL>TL	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1296_1297					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			GACAGCCCCAGGGTCAGCAGCC	0.584													23	54					0	0	0.004672	0	0
AIFM3	150209	broad.mit.edu	37	22	21328912	21328912	+	Splice_Site	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:21328912T>C	uc002ztj.2	+	7	825	c.607_splice	c.e7+2	p.G203_splice	AIFM3_uc002ztk.2_Splice_Site_p.G203_splice|AIFM3_uc002ztl.2_Splice_Site_p.G209_splice|AIFM3_uc011ahx.1_Splice_Site_p.G191_splice|AIFM3_uc002ztm.1_Splice_Site_p.E23_splice	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,						activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			TGGGTGCAGGTTGGTAGTGGG	0.602													9	24					0	0	0.004482	0	0
CHCHD10	400916	broad.mit.edu	37	22	24108364	24108364	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:24108364G>A	uc002zxw.2	-	3	440	c.360C>T	c.(358-360)TCC>TCT	p.S120S		NM_213720	NP_998885	Q8WYQ3	CHC10_HUMAN	coiled-coil-helix-coiled-coil-helix domain	120	CHCH.					mitochondrion					0						CCTCACACAGGGACAGGTCAC	0.662													4	15					0	0	0.000602	0	0
SUSD2	56241	broad.mit.edu	37	22	24583630	24583630	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:24583630C>T	uc002zzn.1	+	12	2027	c.1983C>T	c.(1981-1983)TTC>TTT	p.F661F		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	661	VWFD.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCCACCTTCGAGCCCCTCT	0.572													16	38					0	0	0.007413	0	0
SGSM1	129049	broad.mit.edu	37	22	25251354	25251354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:25251354C>T	uc003abg.2	+	7	783	c.626C>T	c.(625-627)TCC>TTC	p.S209F	SGSM1_uc003abh.2_Missense_Mutation_p.S209F|SGSM1_uc010guu.1_Missense_Mutation_p.S209F|SGSM1_uc003abj.2_Missense_Mutation_p.S209F|SGSM1_uc003abi.1_Missense_Mutation_p.S184F|SGSM1_uc003abf.2_Missense_Mutation_p.S209F	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	209						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						ATCCACAGCTCCCACGTGCGG	0.622													7	15					0	0	0.001984	0	0
THOC5	8563	broad.mit.edu	37	22	29940511	29940511	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:29940511G>A	uc003afr.2	-	4	513	c.178C>T	c.(178-180)CAG>TAG	p.Q60*	THOC5_uc003afs.2_Nonsense_Mutation_p.Q60*|THOC5_uc003aft.2_Nonsense_Mutation_p.Q60*|THOC5_uc003afu.2_Nonsense_Mutation_p.Q60*|THOC5_uc010gvo.2_5'UTR|THOC5_uc003afv.1_Nonsense_Mutation_p.Q60*|THOC5_uc003afw.1_5'Flank	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	60	Interaction with THOC7.|Interaction with CSF1R (By similarity).				intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						TGTAGCTCCTGGCAGGTGTAC	0.542													40	65					0	0	0.006230	0	0
HORMAD2	150280	broad.mit.edu	37	22	30518024	30518024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:30518024G>A	uc003agy.2	+	10	705	c.640G>A	c.(640-642)GAG>AAG	p.E214K		NM_152510	NP_689723	Q8N7B1	HORM2_HUMAN	HORMA domain containing 2	214	HORMA.				meiosis|mitosis	chromosome|nucleus					0			Epithelial(10;0.125)			GTTTGACAAGGAGCCTATCAA	0.433													4	16					0	0	0.009096	0	0
SEC14L3	266629	broad.mit.edu	37	22	30857339	30857339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:30857339C>T	uc003ahy.2	-	11	1128	c.1039G>A	c.(1039-1041)GTG>ATG	p.V347M	SEC14L3_uc003ahz.2_Missense_Mutation_p.V270M|SEC14L3_uc003aia.2_Missense_Mutation_p.V288M|SEC14L3_uc003aib.2_Missense_Mutation_p.V288M	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	347	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	TCCTCGGGCACCATGTGGGCG	0.607													19	59					0	0	0.007413	0	0
PLA2G3	50487	broad.mit.edu	37	22	31536156	31536156	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:31536156C>T	uc003aka.2	-	1	314	c.185G>A	c.(184-186)TGG>TAG	p.W62*		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	62					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						ATGCGCATCCCAGCGGGCATG	0.637													15	52					0	0	0.002450	0	0
RFPL3	10738	broad.mit.edu	37	22	32756464	32756464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:32756464C>T	uc003amj.2	+	2	804	c.599C>T	c.(598-600)TCT>TTT	p.S200F	RFPL3_uc010gwn.2_Missense_Mutation_p.S171F|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	200	B30.2/SPRY.						zinc ion binding			ovary(1)	1						TGCAGAGAATCTGTTCACTGC	0.582													21	52					0	0	0.008871	0	0
IL2RB	3560	broad.mit.edu	37	22	37524807	37524807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:37524807C>T	uc003aqv.1	-	10	1116	c.985G>A	c.(985-987)GAG>AAG	p.E329K		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	329	Cytoplasmic (Potential).				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	TTGTCCCTCTCCAGCACTTCT	0.612													21	31					0	0	0.002299	0	0
DDX17	10521	broad.mit.edu	37	22	38902171	38902171	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:38902171C>T	uc003avy.3	-	1	175	c.72G>A	c.(70-72)GTG>GTA	p.V24V	DDX17_uc003avx.3_Silent_p.V24V|DDX17_uc011anu.1_Intron	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	Error:Variant_position_missing_in_Q92841_after_alignment					RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					TCGCAGACGCCACCGTCGCCG	0.697													4	6					0	0	0.009096	0	0
SYNGR1	9145	broad.mit.edu	37	22	39777762	39777762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:39777762C>T	uc003axq.3	+	4	607	c.545C>T	c.(544-546)TCC>TTC	p.S182F	TAB1_uc003axr.2_Intron	NM_004711	NP_004702	O43759	SNG1_HUMAN	synaptogyrin 1 isoform 1a	182					regulation of long-term neuronal synaptic plasticity|regulation of short-term neuronal synaptic plasticity	cell junction|integral to plasma membrane|melanosome					0	Melanoma(58;0.04)					GCCCTCTTCTCCCAGGACTAC	0.687													18	43					0	0	0.001882	0	0
ENTHD1	150350	broad.mit.edu	37	22	40283589	40283589	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:40283589T>A	uc003ayg.2	-	2	415	c.164A>T	c.(163-165)AAT>ATT	p.N55I		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	55	ENTH.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					CCACAGCATATTCATAATCTC	0.423													21	52					0	0	0.002780	0	0
RANGAP1	5905	broad.mit.edu	37	22	41660766	41660766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:41660766C>T	uc003azs.2	-	4	1852	c.382G>A	c.(382-384)GGT>AGT	p.G128S	RANGAP1_uc003azt.2_Missense_Mutation_p.G128S|RANGAP1_uc003azu.2_Missense_Mutation_p.G128S|RANGAP1_uc011aoz.1_Missense_Mutation_p.G118S	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	128	LRR 2.				mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						CCTTGCACACCGTCGGGCCCG	0.602													9	35					0	0	0.004482	0	0
CSDC2	27254	broad.mit.edu	37	22	41968137	41968137	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:41968137C>T	uc003bak.1	+	2	465	c.168C>T	c.(166-168)ACC>ACT	p.T56T		NM_014460	NP_055275	Q9Y534	CSDC2_HUMAN	RNA-binding protein pippin	56					histone mRNA 3'-end processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|RNA binding				0						GGACCAGGACCTATTCAGCGT	0.652													4	8					0	0	0.001168	0	0
EFCAB6	64800	broad.mit.edu	37	22	43933284	43933284	+	Missense_Mutation	SNP	C	T	T	rs149931639	by1000genomes	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:43933284C>T	uc003bdy.1	-	29	4236	c.4021G>A	c.(4021-4023)GGG>AGG	p.G1341R	EFCAB6_uc003bdz.1_Missense_Mutation_p.G1189R|EFCAB6_uc010gzi.1_Missense_Mutation_p.G1189R	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1341	Interaction with PARK7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TTGATGTCCCCCTGTCTGGCC	0.557													24	77					0	0	0.006320	0	0
GTSE1	51512	broad.mit.edu	37	22	46722511	46722511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:46722511C>T	uc011aqy.1	+	9	1896	c.1684C>T	c.(1684-1686)CGG>TGG	p.R562W	GTSE1_uc011aqz.1_Missense_Mutation_p.R409W|GTSE1_uc003bhl.1_Missense_Mutation_p.R187W|GTSE1_uc003bhm.1_Missense_Mutation_p.R187W|GTSE1_uc003bhn.2_5'Flank	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	543					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		TGTGCCAGCTCGGAGACGTTC	0.597													7	40					0	0	0.001984	0	0
CELSR1	9620	broad.mit.edu	37	22	46765589	46765589	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:46765589G>A	uc003bhw.1	-	26	7872	c.7872C>T	c.(7870-7872)ATC>ATT	p.I2624I	CELSR1_uc011arc.1_Missense_Mutation_p.H1090Y	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2624	Helical; Name=5; (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CCACACTCACGATTATAACAG	0.622													11	26					0	0	0.000978	0	0
CELSR1	9620	broad.mit.edu	37	22	46860109	46860109	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:46860109G>A	uc003bhw.1	-	2	3678	c.3678C>T	c.(3676-3678)CTC>CTT	p.L1226L		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1226	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CCTCCACGAAGAGGGCCAGCA	0.602													20	29					0	0	0.010504	0	0
ZBED4	9889	broad.mit.edu	37	22	50279400	50279400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:50279400C>T	uc003bix.2	+	2	2560	c.2090C>T	c.(2089-2091)CCT>CTT	p.P697L		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	697						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		CTCCCCGCCCCTTCCTACTTC	0.458													31	68					0	0	0.003271	0	0
TYMP	1890	broad.mit.edu	37	22	50967976	50967976	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:50967976T>C	uc003bmb.3	-	1	283	c.163A>G	c.(163-165)AGG>GGG	p.R55G	TYMP_uc003bmc.3_Missense_Mutation_p.R55G|TYMP_uc003bmd.3_Missense_Mutation_p.R55G|TYMP_uc010hbd.2_Missense_Mutation_p.R55G|TYMP_uc003bme.3_Missense_Mutation_p.R55G|TYMP_uc003bmf.3_Missense_Mutation_p.R55G|TYMP_uc011arz.1_Missense_Mutation_p.R55G	NM_001113756	NP_001107228	P19971	TYPH_HUMAN	endothelial cell growth factor 1	55					angiogenesis|cell differentiation|chemotaxis|DNA replication|mitochondrial genome maintenance|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|pyrimidine nucleotide metabolic process	cytosol	growth factor activity|platelet-derived growth factor receptor binding|pyrimidine-nucleoside phosphorylase activity|thymidine phosphorylase activity			ovary(1)	1		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)	Capecitabine(DB01101)|Docetaxel(DB01248)|Floxuridine(DB00322)|Fluorouracil(DB00544)|Sulfasalazine(DB00795)|Tamoxifen(DB00675)	ACGAAGCCCCTGATGTCCGCT	0.687													3	50					0	0	0.000602	0	0
SHANK3	85358	broad.mit.edu	37	22	51123077	51123077	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr22:51123077T>C	uc003bne.1	+	9	1028	c.1028T>C	c.(1027-1029)GTT>GCT	p.V343A		NM_001080420	NP_001073889	F2Z3L0	F2Z3L0_HUMAN	SH3 and multiple ankyrin repeat domains 3	343										central_nervous_system(1)	1		all_cancers(38;3.75e-11)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.22)		GACTCGGATGTTGGTGAGTTC	0.567													10	41					0	0	0.006214	0	0
CNTN6	27255	broad.mit.edu	37	3	1415290	1415290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:1415290C>T	uc003boz.2	+	15	2056	c.1789C>T	c.(1789-1791)CCA>TCA	p.P597S	CNTN6_uc011asj.1_Missense_Mutation_p.P525S|CNTN6_uc003bpa.2_Missense_Mutation_p.P597S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	597	Fibronectin type-III 1.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TTTTCAAGGTCCACCAGGTCC	0.388													9	28					0	0	0.004482	0	0
CNTN4	152330	broad.mit.edu	37	3	2928860	2928860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:2928860G>A	uc003bpc.2	+	9	1113	c.892G>A	c.(892-894)GAA>AAA	p.E298K	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.E298K	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	298	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ATGTGTAGCTGAAAATTCCAG	0.378													4	16					0	0	0.000602	0	0
CNTN4	152330	broad.mit.edu	37	3	3072565	3072565	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:3072565C>T	uc003bpc.2	+	15	1910	c.1689C>T	c.(1687-1689)ATC>ATT	p.I563I	CNTN4_uc003bpb.1_Silent_p.I234I|CNTN4_uc003bpd.1_Silent_p.I563I|CNTN4_uc003bpe.2_Silent_p.I235I|CNTN4_uc003bpf.2_Silent_p.I234I	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	563	Ig-like C2-type 6.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ATTTGATGATCCGAAACATCC	0.433													7	20					0	0	0.004482	0	0
ITPR1	3708	broad.mit.edu	37	3	4706914	4706914	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:4706914C>T	uc003bqa.2	+	17	1995	c.1647C>T	c.(1645-1647)TTC>TTT	p.F549F	ITPR1_uc010hca.1_Silent_p.F534F|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Silent_p.F534F	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	549	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		ACGCTCCTTTCAGACACATCT	0.537													11	35					0	0	0.008291	0	0
CAV3	859	broad.mit.edu	37	3	8787421	8787421	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:8787421G>A	uc003bra.2	+	2	391	c.324G>A	c.(322-324)AAG>AAA	p.K108K	C3orf32_uc003bqz.2_5'Flank|CAV3_uc003brb.2_Silent_p.K108K	NM_001234	NP_001225	P56539	CAV3_HUMAN	caveolin 3	108	Required for interaction with DAG1.|Cytoplasmic (Potential).				cell growth|elevation of cytosolic calcium ion concentration|muscle organ development|negative regulation of cardiac muscle hypertrophy|negative regulation of cell size|negative regulation of MAP kinase activity|negative regulation of sarcomere organization|positive regulation of microtubule polymerization|regulation of skeletal muscle contraction|regulation of ventricular cardiomyocyte membrane repolarization|T-tubule organization	caveola|dystrophin-associated glycoprotein complex|Golgi membrane|neuromuscular junction|T-tubule	protein C-terminus binding|protein complex binding|protein complex scaffold|sodium channel regulator activity			lung(1)|breast(1)	2						CATGCATTAAGAGCTACCTGA	0.607													10	22					0	0	0.006214	0	0
IL17RC	84818	broad.mit.edu	37	3	9965687	9965687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:9965687C>T	uc003bua.2	+	8	1194	c.958C>T	c.(958-960)CGG>TGG	p.R320W	CIDEC_uc003bto.2_Intron|IL17RC_uc010hcr.2_RNA|IL17RC_uc011ato.1_RNA|IL17RC_uc010hcs.2_Missense_Mutation_p.R224W|IL17RC_uc003btz.2_Missense_Mutation_p.R249W|IL17RC_uc011atp.1_Missense_Mutation_p.R105W|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Missense_Mutation_p.R234W|IL17RC_uc010hct.2_Missense_Mutation_p.R249W|IL17RC_uc010hcu.2_Missense_Mutation_p.R249W|IL17RC_uc010hcv.2_Missense_Mutation_p.R234W|IL17RC_uc011atq.1_Missense_Mutation_p.R234W|IL17RC_uc003buc.2_5'UTR	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	320	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						CCCAAAACCCCGGTGGCACAA	0.577													7	40					0	0	0.003080	0	0
TATDN2	9797	broad.mit.edu	37	3	10320110	10320110	+	Silent	SNP	C	T	T	rs146507538	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:10320110C>T	uc003bvg.2	+	6	2690	c.2109C>T	c.(2107-2109)ATC>ATT	p.I703I	TATDN2_uc003bvf.2_Silent_p.I703I|TATDN2_uc011atr.1_Silent_p.I703I|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA|TATDN2_uc011atu.1_5'Flank|TATDN2_uc011atv.1_5'Flank|GHRLOS_uc011atw.1_5'Flank|GHRLOS_uc011atx.1_5'Flank|GHRLOS_uc011aty.1_5'Flank|GHRLOS_uc011atz.1_5'Flank|GHRLOS_uc011aua.1_5'Flank|GHRLOS_uc010hdl.2_5'Flank|GHRLOS_uc011aub.1_5'Flank|GHRLOS_uc010hdm.2_5'Flank|GHRLOS_uc011auc.1_5'Flank|GHRLOS_uc011aud.1_5'Flank|GHRLOS_uc011aue.1_5'Flank|GHRLOS_uc011auf.1_5'Flank|GHRLOS_uc011aug.1_5'Flank	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	703						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						AGAGAATCATCGTGGAAACGG	0.607													63	135					0	0	0.003610	0	0
TMEM40	55287	broad.mit.edu	37	3	12790243	12790243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:12790243G>A	uc003bxg.1	-	3	249	c.122C>T	c.(121-123)TCC>TTC	p.S41F	TMEM40_uc003bxh.1_Missense_Mutation_p.S41F|TMEM40_uc003bxi.1_Intron|TMEM40_uc011auv.1_Missense_Mutation_p.S57F	NM_018306	NP_060776	Q8WWA1	TMM40_HUMAN	transmembrane protein 40	41						integral to membrane					0						TTGTTCTTGGGAAAAGAGTCC	0.353													46	102					0	0	0.003610	0	0
NR2C2	7182	broad.mit.edu	37	3	15057667	15057668	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:15057667_15057668GG>AA	uc003bzj.3	+	4	499_500	c.282_283GG>AA	c.(280-285)ACGGAT>ACAAAT	p.D95N	NR2C2_uc003bzi.2_Missense_Mutation_p.D114N	NM_003298	NP_003289	P49116	NR2C2_HUMAN	nuclear receptor subfamily 2, group C, member 2	95					cell differentiation|nervous system development|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						AGATTGTCACGGATTCTGCCTC	0.411													18	48					0	0	0.004672	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15115534	15115534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:15115534G>A	uc003bzm.1	-	14	2724	c.2110C>T	c.(2110-2112)CCT>TCT	p.P704S	ZFYVE20_uc010hek.1_Missense_Mutation_p.P704S	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	704	Necessary for the interaction with RAB5A.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						GGAACCAGAGGGCTTGAGAGC	0.562													34	65					0	0	0.003755	0	0
GALNTL2	117248	broad.mit.edu	37	3	16268951	16268951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:16268951G>A	uc003car.3	+	10	2339	c.1864G>A	c.(1864-1866)GGA>AGA	p.G622R	GALNTL2_uc003caq.3_Missense_Mutation_p.G355R|GALNTL2_uc003cas.3_Missense_Mutation_p.G152R	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	622	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						TCCGTGTGATGGAAAAGCCCG	0.433													22	40					0	0	0.003954	0	0
PLCL2	23228	broad.mit.edu	37	3	17052090	17052090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:17052090G>A	uc011awc.1	+	5	1333	c.1228G>A	c.(1228-1230)GAT>AAT	p.D410N	PLCL2_uc010het.1_Intron|PLCL2_uc011awd.1_Missense_Mutation_p.D292N	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	418					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TTATATATTCGATCCAGAACA	0.388													31	43					0	0	0.002445	0	0
PLCL2	23228	broad.mit.edu	37	3	17052138	17052138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:17052138C>T	uc011awc.1	+	5	1381	c.1276C>T	c.(1276-1278)CAT>TAT	p.H426Y	PLCL2_uc010het.1_Intron|PLCL2_uc011awd.1_Missense_Mutation_p.H308Y	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	434	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						ACCTCTGTCTCATTACTTTAT	0.393													16	67					0	0	0.004990	0	0
PLCL2	23228	broad.mit.edu	37	3	17052594	17052594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:17052594G>A	uc011awc.1	+	5	1837	c.1732G>A	c.(1732-1734)GAA>AAA	p.E578K	PLCL2_uc011awd.1_Missense_Mutation_p.E460K	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	586					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TGTTACTGACGAAGATGAAGG	0.423													9	23					0	0	0.006214	0	0
ZNF385D	79750	broad.mit.edu	37	3	21606068	21606068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:21606068C>T	uc003cce.2	-	3	682	c.274G>A	c.(274-276)GAT>AAT	p.D92N	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	92	Matrin-type 1.					nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						AAACTTACATCAGAATTAAAT	0.328													11	22					0	0	0.000978	0	0
THRB	7068	broad.mit.edu	37	3	24164584	24164584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:24164584C>T	uc003ccx.3	-	11	1526	c.1177G>A	c.(1177-1179)GAA>AAA	p.E393K	THRB_uc010hfe.2_Missense_Mutation_p.E393K|THRB_uc003ccy.3_Missense_Mutation_p.E393K|THRB_uc003ccz.3_Missense_Mutation_p.E388K	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	393	Ligand-binding.|Interaction with NR2F6.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	TGGTACTTTTCTATTCTCTCA	0.473													20	50					0	0	0.010504	0	0
TRIM71	131405	broad.mit.edu	37	3	32931959	32931959	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:32931959C>T	uc003cff.2	+	4	1326	c.1263C>T	c.(1261-1263)GTC>GTT	p.V421V		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	421	Potential.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						TGCAGCAGGTCCTGGAGGAGG	0.617													9	36					0	0	0.006214	0	0
STAC	6769	broad.mit.edu	37	3	36484998	36484998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:36484998C>T	uc003cgh.1	+	2	293	c.254C>T	c.(253-255)CCA>CTA	p.P85L	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Missense_Mutation_p.P85L	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	85					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						AGCTCCAGCCCACTCCCTGCT	0.562													20	42					0	0	0.008871	0	0
OXSR1	9943	broad.mit.edu	37	3	38289197	38289197	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:38289197C>T	uc003chy.2	+	14	1638	c.1296C>T	c.(1294-1296)ATC>ATT	p.I432I	OXSR1_uc010hhb.2_Silent_p.I366I	NM_005109	NP_005100	O95747	OXSR1_HUMAN	oxidative-stress responsive 1	432					intracellular protein kinase cascade|response to oxidative stress		ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		AAACCAAGATCCCAATCAGTC	0.348													7	18					0	0	0.003080	0	0
SCN10A	6336	broad.mit.edu	37	3	38751002	38751002	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:38751002G>A	uc003ciq.2	-	24	4248	c.4248C>T	c.(4246-4248)GTC>GTT	p.V1416V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1416	III.|Helical; Name=S6 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGTCAATTATGACCCCAACAA	0.408													8	31					0	0	0.004482	0	0
SCN10A	6336	broad.mit.edu	37	3	38768199	38768199	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:38768199G>A	uc003ciq.2	-	16	2985	c.2985C>T	c.(2983-2985)GTC>GTT	p.V995V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	995					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGGGCACAGAGACCCACACAG	0.567													18	22					0	0	0.008871	0	0
SCN10A	6336	broad.mit.edu	37	3	38798227	38798227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:38798227C>T	uc003ciq.2	-	9	1228	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	410					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTTCAATTTCATCAGTGGTT	0.498													36	64					0	0	0.003271	0	0
SCN10A	6336	broad.mit.edu	37	3	38798279	38798279	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:38798279G>A	uc003ciq.2	-	9	1176	c.1176C>T	c.(1174-1176)ATC>ATT	p.I392I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	392	Helical; Name=S6 of repeat I; (Potential).|I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CTACAGCCAAGATCAAGTTGA	0.478													19	69					0	0	0.007413	0	0
SCN10A	6336	broad.mit.edu	37	3	38835276	38835276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:38835276C>T	uc003ciq.2	-	1	226	c.226G>A	c.(226-228)GGG>AGG	p.G76R		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	76					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGGGGCTCCCCGATCAGTTCT	0.562													35	88					0	0	0.004289	0	0
SCN11A	11280	broad.mit.edu	37	3	38889158	38889158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:38889158G>A	uc011ays.1	-	26	4602	c.4403C>T	c.(4402-4404)GCT>GTT	p.A1468V		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1468	IV.|Helical; Voltage-sensor; Name=S4 of repeat IV; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GCCAATCCGAGCCAAGCGGAC	0.488													5	16					0	0	0.001168	0	0
CCBP2	1238	broad.mit.edu	37	3	42906687	42906687	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:42906687C>T	uc003cme.2	+	3	872	c.693C>T	c.(691-693)TCC>TCT	p.S231S	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmf.2_Silent_p.S231S|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	231	Helical; Name=5; (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		TCTTCTACTCCCGTATTGGTT	0.557													34	95					0	0	0.003755	0	0
CDCP1	64866	broad.mit.edu	37	3	45127293	45127293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:45127293G>A	uc003com.2	-	9	2483	c.2348C>T	c.(2347-2349)GCC>GTC	p.A783V		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	783	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		TGCAGTTGGGGCCCTGGAGCA	0.622													14	42					0	0	0.002450	0	0
CCR2	729230	broad.mit.edu	37	3	46399427	46399427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:46399427G>A	uc003cpn.3	+	2	894	c.409G>A	c.(409-411)GAT>AAT	p.D137N	CCR2_uc003cpm.3_Missense_Mutation_p.D137N	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	137	Cytoplasmic (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		CCTGACAATCGATAGATACCT	0.458													115	232					0	0	0.003610	0	0
RTP3	83597	broad.mit.edu	37	3	46542317	46542317	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:46542317G>A	uc003cps.1	+	2	695	c.627G>A	c.(625-627)AGG>AGA	p.R209R		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	209	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		ACATCTGTAGGAACTTAAGCA	0.368													16	25					0	0	0.004990	0	0
COL7A1	1294	broad.mit.edu	37	3	48618556	48618556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:48618556G>A	uc003ctz.2	-	52	4935	c.4934C>T	c.(4933-4935)CCG>CTG	p.P1645L	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1645	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GAGTCTCACCGGAGGACCCTC	0.557													5	10					0	0	0.000602	0	0
TRAIP	10293	broad.mit.edu	37	3	49878425	49878425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:49878425C>T	uc003cxs.1	-	8	804	c.698G>A	c.(697-699)AGA>AAA	p.R233K	TRAIP_uc010hla.1_Intron	NM_005879	NP_005870	Q9BWF2	TRAIP_HUMAN	TRAF interacting protein	233	Interaction with CYLD.|Potential.				cell proliferation|induction of apoptosis	perinuclear region of cytoplasm	protein binding|zinc ion binding			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TACCTTGCTTCTGGAGGAAAA	0.507											OREG0015575	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	75					0	0	0.008361	0	0
MST1R	4486	broad.mit.edu	37	3	49928029	49928029	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:49928029G>A	uc003cxy.3	-	18	3963	c.3699C>T	c.(3697-3699)ATC>ATT	p.I1233I	MST1R_uc011bdc.1_Silent_p.I112I	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	1233	Cytoplasmic (Potential).|Protein kinase.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		CCCTGTCCAGGATGTCGCGGG	0.552													8	23					0	0	0.006214	0	0
MON1A	84315	broad.mit.edu	37	3	49947860	49947860	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:49947860G>A	uc003cxz.2	-	4	1488	c.1362C>T	c.(1360-1362)TCC>TCT	p.S454S	MON1A_uc003cya.2_Silent_p.S292S|MON1A_uc003cyb.2_Silent_p.S292S	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	357							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CCTCGCGAAAGGACGAGGAGG	0.602													15	19					0	0	0.004007	0	0
IQCF3	401067	broad.mit.edu	37	3	51864793	51864793	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:51864793C>T	uc010hlx.1	+	5	782	c.441C>T	c.(439-441)TTC>TTT	p.F147F	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	147										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AGCCAGAGTTCCACATTGAAA	0.488													11	22					0	0	0.008291	0	0
PBRM1	55193	broad.mit.edu	37	3	52643747	52643747	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:52643747T>A	uc003des.2	-	16	2161	c.2149A>T	c.(2149-2151)AAG>TAG	p.K717*	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Nonsense_Mutation_p.K717*|PBRM1_uc003der.2_Nonsense_Mutation_p.K685*|PBRM1_uc003det.2_Nonsense_Mutation_p.K732*|PBRM1_uc003deu.2_Nonsense_Mutation_p.K732*|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Nonsense_Mutation_p.K717*|PBRM1_uc010hmk.1_Nonsense_Mutation_p.K717*|PBRM1_uc003dey.2_Nonsense_Mutation_p.K717*|PBRM1_uc003dez.1_Nonsense_Mutation_p.K717*|PBRM1_uc003dfb.1_Nonsense_Mutation_p.K630*|PBRM1_uc003dfa.1_Nonsense_Mutation_p.K63*|PBRM1_uc003dfc.2_Nonsense_Mutation_p.K84*	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	717	Bromo 5.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TCTTGGTACTTGTTGGCCATC	0.398			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								22	46					0	0	0.001882	0	0
PBRM1	55193	broad.mit.edu	37	3	52649472	52649473	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:52649472_52649473CC>TT	uc003des.2	-	15	1831	c.1819_splice	c.e15-1	p.V607_splice	PBRM1_uc003dex.2_Splice_Site|PBRM1_uc003deq.2_Splice_Site_p.V607_splice|PBRM1_uc003der.2_Splice_Site_p.V575_splice|PBRM1_uc003det.2_Splice_Site_p.V622_splice|PBRM1_uc003deu.2_Splice_Site_p.V622_splice|PBRM1_uc003dev.2_Splice_Site|PBRM1_uc003dew.2_Splice_Site_p.V607_splice|PBRM1_uc010hmk.1_Splice_Site_p.V607_splice|PBRM1_uc003dey.2_Splice_Site_p.V607_splice|PBRM1_uc003dez.1_Splice_Site_p.V607_splice|PBRM1_uc003dfb.1_Splice_Site_p.V520_splice|PBRM1_uc003dfc.2_5'UTR	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4						chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TCATTATAAACCTACATTCCAA	0.332			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								7	27					0	0	0.004672	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54676174	54676174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:54676174G>A	uc003dhf.2	+	11	1121	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.G264E|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.G92E|HESRG_uc003dhj.2_5'Flank	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	358	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		ACGGGACAAGGAAGTATCTGC	0.408													8	15					0	0	0.004482	0	0
LRTM1	57408	broad.mit.edu	37	3	54958975	54958975	+	Missense_Mutation	SNP	C	T	T	rs141303357	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:54958975C>T	uc003dhl.2	-	2	409	c.275G>A	c.(274-276)GGA>GAA	p.G92E	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	92	Extracellular (Potential).|LRR 2.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		ATGGAAAGCTCCAGGGGCCAG	0.463													4	20					0	0	0.009096	0	0
ERC2	26059	broad.mit.edu	37	3	56330430	56330430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:56330430C>T	uc003dhr.1	-	3	947	c.691G>A	c.(691-693)GAG>AAG	p.E231K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	231	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GTTCGCAGCTCATCTTGAAGG	0.512													15	36					0	0	0.002450	0	0
ABHD6	57406	broad.mit.edu	37	3	58271159	58271159	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:58271159C>T	uc003djs.3	+	8	1226	c.816C>T	c.(814-816)ATC>ATT	p.I272I	ABHD6_uc003djr.2_Silent_p.I272I|ABHD6_uc003djt.3_Silent_p.I272I	NM_020676	NP_065727	Q9BV23	ABHD6_HUMAN	abhydrolase domain containing 6	272	Cytoplasmic (Potential).					integral to membrane	acylglycerol lipase activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(55;0.000225)|KIRC - Kidney renal clear cell carcinoma(284;0.0471)|Kidney(284;0.0589)|OV - Ovarian serous cystadenocarcinoma(275;0.209)		CGACGCAGATCATCTGGGGGA	0.483													14	44					0	0	0.003163	0	0
ACOX2	8309	broad.mit.edu	37	3	58519835	58519835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:58519835C>T	uc003dkl.2	-	4	536	c.361G>A	c.(361-363)GTC>ATC	p.V121I		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	121					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		CTCACGAAGACTCTGTGTATA	0.537													19	50					0	0	0.001882	0	0
FAM19A1	407738	broad.mit.edu	37	3	68587994	68587994	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:68587994G>A	uc003dnd.2	+	4	563	c.347G>A	c.(346-348)TGG>TAG	p.W116*	FAM19A1_uc003dne.2_Nonsense_Mutation_p.W116*|FAM19A1_uc003dng.2_Nonsense_Mutation_p.W116*	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	116						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		AATTCTGGATGGATGTGCGCA	0.428													9	28					0	0	0.004482	0	0
CADM2	253559	broad.mit.edu	37	3	85851313	85851313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:85851313G>A	uc003dqj.2	+	2	804	c.178G>A	c.(178-180)GCT>ACT	p.A60T	CADM2_uc003dqk.2_Missense_Mutation_p.A69T|CADM2_uc003dql.2_Missense_Mutation_p.A62T	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	60	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GTCAAATCCAGCTCAACAGAC	0.353													11	17					0	0	0.000978	0	0
OR5H1	26341	broad.mit.edu	37	3	97851821	97851821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:97851821C>T	uc011bgt.1	+	1	280	c.280C>T	c.(280-282)CTC>TTC	p.L94F		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GATGATATCTCTCTCTGAATG	0.398													29	76					0	0	0.004878	0	0
OR5H6	79295	broad.mit.edu	37	3	97983363	97983363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:97983363C>T	uc003dsi.1	+	1	235	c.235C>T	c.(235-237)CTT>TTT	p.L79F		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						GTACTTATTCCTTGGGAGTTT	0.413													41	65					0	0	0.008740	0	0
OR5H6	79295	broad.mit.edu	37	3	97983875	97983875	+	Silent	SNP	G	A	A	rs146320551		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:97983875G>A	uc003dsi.1	+	1	747	c.747G>A	c.(745-747)GGG>GGA	p.G249G		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	249	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.G249G(1)		skin(2)|large_intestine(1)	3						CTATCAAAGGGATACGAAAAG	0.388													5	25					0	0	0.001168	0	0
ZPLD1	131368	broad.mit.edu	37	3	102183090	102183090	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:102183090C>T	uc003dvs.1	+	14	1638	c.756C>T	c.(754-756)TTC>TTT	p.F252F	ZPLD1_uc003dvt.1_Silent_p.F268F|ZPLD1_uc011bhg.1_Silent_p.F252F	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	252	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ATGATCTTTTCCTTAGGTAAG	0.313													14	36					0	0	0.001855	0	0
CCDC54	84692	broad.mit.edu	37	3	107096458	107096458	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:107096458G>A	uc003dwi.1	+	1	271	c.24G>A	c.(22-24)AGG>AGA	p.R8R		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	8											0						ACACCAAAAGGGTAAAAGCTG	0.398													20	43					0	0	0.008871	0	0
MORC1	27136	broad.mit.edu	37	3	108780899	108780899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:108780899G>A	uc003dxl.2	-	11	989	c.902C>T	c.(901-903)TCC>TTC	p.S301F	MORC1_uc011bhn.1_Missense_Mutation_p.S301F	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	301	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTTCAATATGGATTCAGCTGG	0.343													17	30					0	0	0.004007	0	0
DPPA2	151871	broad.mit.edu	37	3	109026926	109026926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:109026926G>A	uc003dxo.2	-	6	858	c.611C>T	c.(610-612)TCA>TTA	p.S204L		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	204						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						AATGGAACATGAATTCAAAGC	0.453													5	39					0	0	0.000602	0	0
DPPA4	55211	broad.mit.edu	37	3	109049624	109049624	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:109049624C>T	uc003dxq.3	-	5	481	c.426G>A	c.(424-426)CGG>CGA	p.R142R	DPPA4_uc011bho.1_Intron|DPPA4_uc011bhp.1_Silent_p.R142R	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	142						nucleus	protein binding			upper_aerodigestive_tract(1)	1						GCAATGATTTCCGGATTTTGG	0.388													10	22					0	0	0.008291	0	0
POPDC2	64091	broad.mit.edu	37	3	119367478	119367478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:119367478G>A	uc003ecx.1	-	3	772	c.638C>T	c.(637-639)TCC>TTC	p.S213F	POPDC2_uc010hqw.1_Missense_Mutation_p.S213F|POPDC2_uc003ecy.1_Missense_Mutation_p.S31F	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	213						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		CCGGGGCCAGGAAATGTAGCT	0.473													15	37					0	0	0.010504	0	0
STXBP5L	9515	broad.mit.edu	37	3	120924817	120924817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:120924817C>T	uc003eec.3	+	10	1065	c.925C>T	c.(925-927)CTT>TTT	p.L309F	STXBP5L_uc011bji.1_Missense_Mutation_p.L309F	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	309	WD 6.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TAAACCAATTCTTAAAGTAGA	0.274													10	22					0	0	0.001855	0	0
STXBP5L	9515	broad.mit.edu	37	3	121100148	121100148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:121100148G>A	uc003eec.3	+	23	2568	c.2428G>A	c.(2428-2430)GAA>AAA	p.E810K	STXBP5L_uc011bji.1_Missense_Mutation_p.E786K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	810					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGAAAACCGAGAAAATTCCTA	0.294													14	35					0	0	0.002450	0	0
CASR	846	broad.mit.edu	37	3	121976156	121976156	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:121976156G>A	uc003eev.3	+	3	786	c.414G>A	c.(412-414)ACG>ACA	p.T138T	CASR_uc003eew.3_Silent_p.T138T	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	138	Extracellular (Potential).		T -> M (in FHH).		anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TTCCCTCTACGATTGCTGTGG	0.517													19	40					0	0	0.010504	0	0
CASR	846	broad.mit.edu	37	3	121980978	121980978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:121980978G>A	uc003eev.3	+	4	1468	c.1096G>A	c.(1096-1098)GGA>AGA	p.G366R	CASR_uc003eew.3_Missense_Mutation_p.G366R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	366	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	AGGTGCAAAAGGACCTTTACC	0.498													6	29					0	0	0.003080	0	0
ADCY5	111	broad.mit.edu	37	3	123019094	123019094	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:123019094G>A	uc003egh.1	-	15	2773	c.2773C>T	c.(2773-2775)CTG>TTG	p.L925L	ADCY5_uc003egg.1_Silent_p.L558L|ADCY5_uc003egi.1_Silent_p.L484L	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	925	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CTGATCTGCAGGAACACGGAG	0.642													7	27					0	0	0.004482	0	0
COPG	22820	broad.mit.edu	37	3	128976410	128976410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:128976410C>T	uc003els.2	+	9	777	c.677C>T	c.(676-678)CCC>CTC	p.P226L	COPG_uc010htb.2_Missense_Mutation_p.P132L	NM_016128	NP_057212	Q9Y678	COPG_HUMAN	coatomer protein complex, subunit gamma 1	226					COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(3)|breast(1)	4						CTTAAGTCTCCCTTTGCCTAC	0.542													47	102					0	0	0.003610	0	0
COL6A6	131873	broad.mit.edu	37	3	130287413	130287413	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:130287413A>G	uc010htl.2	+	5	2397	c.2366A>G	c.(2365-2367)GAT>GGT	p.D789G		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	789	Nonhelical region.|VWFA 4.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CGCATTGAAGATGATCTTGTT	0.458													18	37					0	0	0.010504	0	0
COL6A6	131873	broad.mit.edu	37	3	130311941	130311941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:130311941G>A	uc010htl.2	+	15	4439	c.4408G>A	c.(4408-4410)GGA>AGA	p.G1470R	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1470	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CGGATTAAACGGAGAACAGGT	0.378													48	128					0	0	0.003610	0	0
CPNE4	131034	broad.mit.edu	37	3	131404763	131404763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:131404763G>A	uc003eok.2	-	6	982	c.547C>T	c.(547-549)CGT>TGT	p.R183C	CPNE4_uc011blq.1_Missense_Mutation_p.R201C|CPNE4_uc003eol.2_Missense_Mutation_p.R201C|CPNE4_uc003eom.2_Missense_Mutation_p.R183C	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	183	C2 2.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCATTCATACGAAAAATTTCC	0.383													8	13					0	0	0.006214	0	0
EPHB1	2047	broad.mit.edu	37	3	134851570	134851570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:134851570C>T	uc003eqt.2	+	5	1196	c.976C>T	c.(976-978)CCC>TCC	p.P326S	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Silent_p.V214V|EPHB1_uc003equ.2_5'UTR	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	326	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CCCATCAGGTCCCCGCAATGT	0.547													4	15					0	0	0.009096	0	0
ATR	545	broad.mit.edu	37	3	142188402	142188402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:142188402G>A	uc003eux.3	-	38	6451	c.6329C>T	c.(6328-6330)TCC>TTC	p.S2110F	ATR_uc003euy.1_5'UTR	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2110	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TACACGATCGGAGCGGCCAGC	0.323								Other_conserved_DNA_damage_response_genes					8	27					0	0	0.003080	0	0
CP	1356	broad.mit.edu	37	3	148924025	148924025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:148924025C>T	uc003ewy.3	-	6	1391	c.1138G>A	c.(1138-1140)GAA>AAA	p.E380K	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Missense_Mutation_p.E161K|CP_uc003ewz.2_Missense_Mutation_p.E380K|CP_uc010hvf.1_Missense_Mutation_p.E106K	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	380	Plastocyanin-like 3.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	CAGATGATTTCCTCAGCGGCA	0.403													14	40					0	0	0.003163	0	0
TM4SF18	116441	broad.mit.edu	37	3	149040220	149040220	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:149040220G>A	uc003exa.2	-	5	551	c.414C>T	c.(412-414)TTC>TTT	p.F138F		NM_138786	NP_620141	Q96CE8	T4S18_HUMAN	transmembrane 4 L six family member 18	138	Extracellular (Potential).					integral to membrane				ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			AATCTGTAAGGAAACTGAGAG	0.393													8	16					0	0	0.000978	0	0
MME	4311	broad.mit.edu	37	3	154886527	154886527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:154886527G>A	uc010hvr.1	+	20	2132	c.1921G>A	c.(1921-1923)GGA>AGA	p.G641R	MME_uc003fab.1_Missense_Mutation_p.G641R|MME_uc003fac.1_Missense_Mutation_p.G641R|MME_uc003fad.1_Missense_Mutation_p.G641R|MME_uc003fae.1_Missense_Mutation_p.G641R	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	641	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	ACAGCTTAATGGAATTAATAC	0.299													11	25					0	0	0.002450	0	0
PLCH1	23007	broad.mit.edu	37	3	155200524	155200524	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:155200524C>T	uc011bok.1	-	23	3592	c.3315G>A	c.(3313-3315)GTG>GTA	p.V1105V	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.V1067V	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1105					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CCTTGATTTTCACACCATGCA	0.478													32	77					0	0	0.008361	0	0
ARL14	80117	broad.mit.edu	37	3	160395299	160395299	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:160395299A>G	uc003fdq.2	+	1	352	c.165A>G	c.(163-165)GAA>GAG	p.E55E		NM_025047	NP_079323	Q8N4G2	ARL14_HUMAN	ADP-ribosylation factor-like 14	55					small GTPase mediated signal transduction	intracellular	GTP binding				0			Lung(72;7.02e-05)|LUSC - Lung squamous cell carcinoma(72;7.23e-05)			TCGAGTTGGAAAGGAATCTTT	0.428													12	35					0	0	0.001855	0	0
SEC62	7095	broad.mit.edu	37	3	169710486	169710486	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:169710486A>G	uc003fgg.2	+	8	866	c.835A>G	c.(835-837)AGG>GGG	p.R279G	SEC62_uc003fgh.2_Missense_Mutation_p.R279G	NM_003262	NP_003253	Q99442	SEC62_HUMAN	translocation protein 1	279	Cytoplasmic (Potential).				cotranslational protein targeting to membrane|transmembrane transport	aggresome|endoplasmic reticulum membrane|integral to membrane|intermediate filament cytoskeleton|rough endoplasmic reticulum	protein transporter activity|receptor activity			ovary(1)	1						TGACTCCTTCAGGCCTCTGTA	0.423													22	49					0	0	0.003330	0	0
TNIK	23043	broad.mit.edu	37	3	170912390	170912390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:170912390G>A	uc003fhh.2	-	5	686	c.341C>T	c.(340-342)ACC>ATC	p.T114I	TNIK_uc003fhi.2_Missense_Mutation_p.T114I|TNIK_uc003fhj.2_Missense_Mutation_p.T114I|TNIK_uc003fhk.2_Missense_Mutation_p.T114I|TNIK_uc003fhl.2_Missense_Mutation_p.T114I|TNIK_uc003fhm.2_Missense_Mutation_p.T114I|TNIK_uc003fhn.2_Missense_Mutation_p.T114I|TNIK_uc003fho.2_Missense_Mutation_p.T114I	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	114	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GATCAGGTCGGTGACAGAGCC	0.463													36	66					0	0	0.005524	0	0
EIF2B5	8893	broad.mit.edu	37	3	183859858	183859858	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:183859858G>A	uc003fmp.2	+	8	1666	c.1302G>A	c.(1300-1302)CAG>CAA	p.Q434Q	EIF2B5_uc003fmq.2_Silent_p.Q155Q|EIF2B5_uc003fmr.2_5'Flank	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	434					astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			TCACTTCCCAGGTGAGACCTG	0.507													13	25					0	0	0.002450	0	0
DGKG	1608	broad.mit.edu	37	3	185983042	185983042	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:185983042G>A	uc003fqa.2	-	14	1800	c.1263C>T	c.(1261-1263)GTC>GTT	p.V421V	DGKG_uc003fqb.2_Silent_p.V382V|DGKG_uc003fqc.2_Silent_p.V421V|DGKG_uc011brx.1_Intron	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	421					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GTACCTGCATGACAAGTTCGC	0.507													7	18					0	0	0.003080	0	0
DGKG	1608	broad.mit.edu	37	3	186038225	186038225	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:186038225G>A	uc003fqa.2	-	2	561	c.24C>T	c.(22-24)TCC>TCT	p.S8S	DGKG_uc003fqb.2_Silent_p.S8S|DGKG_uc003fqc.2_Silent_p.S8S|DGKG_uc011brx.1_Silent_p.S8S	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	8					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	CTGGAGTGAGGGAGACCCACC	0.468													14	35					0	0	0.003163	0	0
ST6GAL1	6480	broad.mit.edu	37	3	186760883	186760883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:186760883C>T	uc003frb.2	+	4	824	c.392C>T	c.(391-393)CCA>CTA	p.P131L	ST6GAL1_uc003frc.2_Intron|ST6GAL1_uc003frd.2_Missense_Mutation_p.P131L	NM_173216	NP_775323	P15907	SIAT1_HUMAN	ST6 beta-galactosamide	131	Lumenal (Potential).				humoral immune response|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			central_nervous_system(1)	1	all_cancers(143;2.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;8.53e-19)	GBM - Glioblastoma multiforme(93;0.0939)		GGGCCAGGACCAGGCATCAAG	0.488													11	26					0	0	0.008291	0	0
TP63	8626	broad.mit.edu	37	3	189526315	189526315	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:189526315G>A	uc003fry.2	+	4	668	c.579G>A	c.(577-579)ACG>ACA	p.T193T	TP63_uc003frx.2_Silent_p.T193T|TP63_uc003frz.2_Silent_p.T193T|TP63_uc010hzc.1_Silent_p.T193T|TP63_uc003fsa.2_Silent_p.T99T|TP63_uc003fsb.2_Silent_p.T99T|TP63_uc003fsc.2_Silent_p.T99T|TP63_uc003fsd.2_Silent_p.T99T|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Silent_p.T74T	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	193			T -> TP (in SHFM4).		anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CCACCTGGACGGTAAGAGCAG	0.617									Hay-Wells_syndrome	HNSCC(45;0.13)			12	23					0	0	0.003163	0	0
CLDN1	9076	broad.mit.edu	37	3	190026182	190026182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:190026182G>A	uc003fsh.2	-	4	740	c.520C>T	c.(520-522)CTC>TTC	p.L174F		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	174	Helical; (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		AGAAGGCAGAGAGAAGCAGCA	0.493													9	38					0	0	0.006214	0	0
ATP13A5	344905	broad.mit.edu	37	3	193029616	193029616	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:193029616A>G	uc011bsq.1	-	20	2434	c.2434T>C	c.(2434-2436)TTG>CTG	p.L812L		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	812					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TTTGGAAGCAAGCTGTTGAAA	0.423													15	17					0	0	0.004990	0	0
ATP13A5	344905	broad.mit.edu	37	3	193081082	193081082	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:193081082G>A	uc011bsq.1	-	3	327	c.327C>T	c.(325-327)TCC>TCT	p.S109S		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	109					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CAGCCACCAGGGATTCTTCCC	0.408													11	50					0	0	0.008291	0	0
ZNF595	152687	broad.mit.edu	37	4	59433	59433	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:59433G>A	uc003fzv.1	+	2	270	c.114G>A	c.(112-114)AGG>AGA	p.R38R	ZNF595_uc003fzu.1_RNA|ZNF718_uc003fzt.3_Silent_p.R38R|ZNF595_uc010iay.1_RNA|ZNF595_uc011bus.1_5'UTR|ZNF595_uc011but.1_Intron	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	38					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		AGAACTACAGGAACCTGGTCT	0.438													14	360					0	0	0.006122	0	0
ZNF732	654254	broad.mit.edu	37	4	299103	299103	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:299103C>T	uc010ibb.1	-	1		c.161G>A						B4DXR9	ZN732_HUMAN	Homo sapiens chromosome 4 isolate HA_003619 mRNA sequence.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCACCATTTCCCCACTTCAGG	0.642													4	13					0	0	0.009096	0	0
TNIP2	79155	broad.mit.edu	37	4	2746568	2746569	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:2746568_2746569GG>AA	uc003gfg.2	-	4	848_849	c.761_762CC>TT	c.(760-762)CCC>CTT	p.P254L	TNIP2_uc003gff.2_Missense_Mutation_p.P147L|TNIP2_uc003gfh.2_Intron	NM_024309	NP_077285	Q8NFZ5	TNIP2_HUMAN	A20-binding inhibitor of NF-kappaB activation 2	254						cytosol	protein binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TCATCAGCTCGGGCTCGTGGGG	0.599													12	39					0	0	0.004672	0	0
SH3BP2	6452	broad.mit.edu	37	4	2831772	2831773	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:2831772_2831773CC>TT	uc003gfi.3	+	8	1259_1260	c.1139_1140CC>TT	c.(1138-1140)CCC>CTT	p.P380L	SH3BP2_uc011bvp.1_Missense_Mutation_p.P408L|SH3BP2_uc003gfj.3_Missense_Mutation_p.P437L|SH3BP2_uc003gfk.3_Missense_Mutation_p.P380L|SH3BP2_uc003gfl.3_Missense_Mutation_p.P313L|SH3BP2_uc003gfm.3_Missense_Mutation_p.P355L	NM_001122681	NP_001116153	P78314	3BP2_HUMAN	SH3-domain binding protein 2 isoform a	380					signal transduction		SH3 domain binding|SH3/SH2 adaptor activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		TTTGTGCCCCCCGTGGCTCCCC	0.683									Cherubism				11	33					0	0	0.004672	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229160	8229160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:8229160G>A	uc003gkv.3	+	12	1840	c.1739G>A	c.(1738-1740)CGG>CAG	p.R580Q	SH3TC1_uc003gkw.3_Missense_Mutation_p.R504Q|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	580	TPR 1.						binding			large_intestine(2)|pancreas(1)	3						TCCCAGGCCCGGGTGTACTTT	0.667													24	67					0	0	0.004656	0	0
ACOX3	8310	broad.mit.edu	37	4	8375329	8375329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:8375329C>T	uc010idk.2	-	16	2000	c.1855G>A	c.(1855-1857)GGA>AGA	p.G619R	ACOX3_uc003glc.3_Missense_Mutation_p.G619R|ACOX3_uc003gld.3_Intron	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	619					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						AACACTTCTCCCGCCTGCTCA	0.597													4	11					0	0	0.000602	0	0
CPZ	8532	broad.mit.edu	37	4	8602878	8602878	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:8602878C>T	uc003glm.2	+	3	276	c.150C>T	c.(148-150)ACC>ACT	p.T50T	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_5'UTR|CPZ_uc003glo.2_Silent_p.T39T|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	50	FZ.				proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						AGCTCAGGACCTGCAGTGATG	0.632													6	17					0	0	0.003080	0	0
CPZ	8532	broad.mit.edu	37	4	8613827	8613827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:8613827G>A	uc003glm.2	+	8	1427	c.1301G>A	c.(1300-1302)GGA>GAA	p.G434E	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.G297E|CPZ_uc003glo.2_Missense_Mutation_p.G423E|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	434					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						AATAGGTGTGGAGGCAATTTC	0.483													9	21					0	0	0.006214	0	0
SLIT2	9353	broad.mit.edu	37	4	20525485	20525485	+	Silent	SNP	C	T	T	rs145340436		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:20525485C>T	uc003gpr.1	+	13	1437	c.1233C>T	c.(1231-1233)ATC>ATT	p.I411I	SLIT2_uc003gps.1_Silent_p.I411I	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	411	LRR 11.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TTCAGACCATCGCCAAGGGGA	0.418													25	50					0	0	0.004656	0	0
TLR10	81793	broad.mit.edu	37	4	38775011	38775011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:38775011G>A	uc003gti.2	-	2	2580	c.2201C>T	c.(2200-2202)CCA>CTA	p.P734L	TLR10_uc003gtj.2_Missense_Mutation_p.P734L|TLR10_uc003gtk.2_Missense_Mutation_p.P734L	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	734	TIR.|Cytoplasmic (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						GCAATAGAATGGAATGGGTTC	0.403													19	30					0	0	0.002780	0	0
APBB2	323	broad.mit.edu	37	4	40936483	40936484	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:40936483_40936484GG>AA	uc003gvl.2	-	10	1870_1871	c.1240_1241CC>TT	c.(1240-1242)CCA>TTA	p.P414L	APBB2_uc010ifu.2_5'UTR|APBB2_uc003gvm.2_Missense_Mutation_p.P393L|APBB2_uc003gvn.2_Missense_Mutation_p.P415L|APBB2_uc011byt.1_Missense_Mutation_p.P376L	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	414	PID 1.				cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						CTTGGCTTCTGGGTCACTGTTG	0.381													25	79					0	0	0.004672	0	0
UCHL1	7345	broad.mit.edu	37	4	41265263	41265263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:41265263C>T	uc003gvo.2	+	7	577	c.481C>T	c.(481-483)CAT>TAT	p.H161Y	UCHL1_uc003gvp.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvq.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvr.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvs.2_Missense_Mutation_p.H80Y	NM_004181	NP_004172	P09936	UCHL1_HUMAN	ubiquitin carboxyl-terminal esterase L1	161		Proton donor.		H->D: 10000-fold decrease in enzymatic activity; no change in affinity for ubiquitin ethyl ester.|H->K,Q,N,Y: Abolishes enzymatic activity.	cell death|negative regulation of MAP kinase activity|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus|plasma membrane	alpha-2A adrenergic receptor binding|cysteine-type endopeptidase activity|ligase activity|omega peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity			central_nervous_system(1)|skin(1)	2						GGTGAATTTCCATTTTATTCT	0.333													14	39					0	0	0.004007	0	0
PHOX2B	8929	broad.mit.edu	37	4	41748110	41748111	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:41748110_41748111GG>AA	uc003gwf.3	-	3	1018_1019	c.658_659CC>TT	c.(658-660)CCG>TTG	p.P220L		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	220					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity	p.G216fs*88(1)		autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						agctccagccgggctgggcccg	0.327			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				10	24					0	0	0.004672	0	0
ATP8A1	10396	broad.mit.edu	37	4	42577650	42577650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:42577650C>T	uc003gwr.2	-	13	1427	c.1195G>A	c.(1195-1197)GAA>AAA	p.E399K	ATP8A1_uc003gws.2_Missense_Mutation_p.E399K|ATP8A1_uc011byz.1_Missense_Mutation_p.E399K	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	399	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TGGCCAAGTTCCTCATTCAGA	0.358													33	79					0	0	0.004289	0	0
ATP8A1	10396	broad.mit.edu	37	4	42592857	42592857	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:42592857G>A	uc003gwr.2	-	7	727	c.495C>T	c.(493-495)CTC>CTT	p.L165L	ATP8A1_uc003gws.2_Intron|ATP8A1_uc011byz.1_Silent_p.L165L	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	165	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GATCTGCTGGGAGATGTTCCC	0.458													28	50					0	0	0.003271	0	0
GABRB1	2560	broad.mit.edu	37	4	47427930	47427930	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:47427930C>T	uc003gxh.2	+	9	1694	c.1320C>T	c.(1318-1320)ATC>ATT	p.I440I	GABRB1_uc011bze.1_Silent_p.I370I	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	440	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AAGTCAAGATCCCCGACTTGA	0.562													20	44					0	0	0.007413	0	0
ATP10D	57205	broad.mit.edu	37	4	47514830	47514830	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:47514830A>G	uc003gxk.1	+	2	437	c.273A>G	c.(271-273)TTA>TTG	p.L91L	ATP10D_uc003gxj.3_Silent_p.L91L	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	91	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CAAGAAATTTATTTGAACAAT	0.318													9	21					0	0	0.006214	0	0
CWH43	80157	broad.mit.edu	37	4	49005819	49005819	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:49005819C>T	uc003gyv.2	+	7	1052	c.870C>T	c.(868-870)TTC>TTT	p.F290F	CWH43_uc011bzl.1_Silent_p.F263F	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	290	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GCTGTGTCTTCGCCATCTTTA	0.488													21	30					0	0	0.001882	0	0
LNX1	84708	broad.mit.edu	37	4	54344801	54344801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:54344801C>T	uc003hag.3	-	8	1850	c.1594G>A	c.(1594-1596)GAT>AAT	p.D532N	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.D436N|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	532	PDZ 3.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			ATAGGCAAATCCCATTCTCTA	0.443													26	59					0	0	0.006320	0	0
KDR	3791	broad.mit.edu	37	4	55968074	55968074	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:55968074G>A	uc003has.2	-	15	2558	c.2256C>T	c.(2254-2256)TTC>TTT	p.F752F	KDR_uc003hat.1_Silent_p.F752F	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	752	Ig-like C2-type 7.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CTTCTATTATGAAAAATGCCT	0.303			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			20	43					0	0	0.010504	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68812211	68812211	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:68812211C>T	uc003hdr.1	-	2	211	c.90G>A	c.(88-90)GTG>GTA	p.V30V	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Silent_p.V30V	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	30	Helical; Signal-anchor for type II membrane protein; (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TCACTGCCACCACTGTCAGGG	0.438													12	18					0	0	0.000978	0	0
UGT2B11	10720	broad.mit.edu	37	4	70071286	70071286	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:70071286C>T	uc003heh.2	-	4	1012	c.1003_splice	c.e4-1	p.V335_splice	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,						estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TCCACAGAACCTGTTACAGTA	0.398													14	42					0	0	0.001855	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361348	70361348	+	Missense_Mutation	SNP	G	A	A	rs41299976		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:70361348G>A	uc003hek.3	-	1	279	c.232C>T	c.(232-234)CCT>TCT	p.P78S	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.P78S	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	78			P -> T.		estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AAAGATACAGGATAAACTTCA	0.383													15	30					0	0	0.002450	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361566	70361566	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:70361566C>T	uc003hek.3	-	1	61	c.14G>A	c.(13-15)TGG>TAG	p.W5*	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Nonsense_Mutation_p.W5*	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	5					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AGCTGAAGTCCATTTCATAGA	0.448													19	63					0	0	0.008871	0	0
C4orf35	85438	broad.mit.edu	37	4	71201035	71201035	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:71201035G>A	uc003hff.2	+	1	365	c.279G>A	c.(277-279)CAG>CAA	p.Q93Q		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	93						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				CTCACCTACAGAAAGAAATTA	0.373													18	24					0	0	0.008871	0	0
PROL1	58503	broad.mit.edu	37	4	71275418	71275418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:71275418C>T	uc003hfi.2	+	3	547	c.373C>T	c.(373-375)CCT>TCT	p.P125S		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	125	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				ACCCCCATTTCCTCCTATTCC	0.413													17	57					0	0	0.007413	0	0
FRAS1	80144	broad.mit.edu	37	4	79373339	79373339	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:79373339C>T	uc003hlb.2	+	47	7034	c.6594C>T	c.(6592-6594)TCC>TCT	p.S2198S		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2197	CSPG 10.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						AAGACAAATCCCCACCAGTCA	0.458													9	36					0	0	0.006214	0	0
GK2	2712	broad.mit.edu	37	4	80328367	80328367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:80328367G>A	uc003hlu.2	-	1	1006	c.988C>T	c.(988-990)CGT>TGT	p.R330C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	330					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CTTAGCCAACGAATAACAGCA	0.428													14	53					0	0	0.003163	0	0
PRDM8	56978	broad.mit.edu	37	4	81123399	81123399	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:81123399C>T	uc010ijo.2	+	8	1622	c.783C>T	c.(781-783)TTC>TTT	p.F261F	PRDM8_uc003hmb.3_Silent_p.F261F|PRDM8_uc003hmc.3_Silent_p.F261F	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	261	Gly-rich.|Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CCACAGACTTCCACAACCTGG	0.577											OREG0016246	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	41					0	0	0.001882	0	0
SCD5	79966	broad.mit.edu	37	4	83601897	83601897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:83601897C>T	uc003hna.2	-	3	852	c.532G>A	c.(532-534)GAC>AAC	p.D178N	SCD5_uc003hnb.3_Missense_Mutation_p.D178N	NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	178					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				GCAAGCAGGTCAGTGACGTCA	0.532													18	39					0	0	0.006122	0	0
MRPS18C	51023	broad.mit.edu	37	4	84377272	84377272	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:84377272G>A	uc003hor.3	+	1	155	c.42G>A	c.(40-42)AAG>AAA	p.K14K	HELQ_uc003hom.2_5'Flank|HELQ_uc010ikb.2_5'Flank|HELQ_uc003hol.3_5'Flank|HELQ_uc010ikc.2_5'Flank|HELQ_uc003hon.1_5'Flank|HELQ_uc003hoo.1_5'Flank|HELQ_uc003hop.1_5'Flank|HELQ_uc003hoq.1_5'Flank|MRPS18C_uc011ccu.1_Silent_p.K14K	NM_016067	NP_057151	Q9Y3D5	RT18C_HUMAN	mitochondrial ribosomal protein S18C precursor	14					translation	mitochondrial small ribosomal subunit	structural constituent of ribosome				0		Hepatocellular(203;0.114)				TAGGGAGGAAGAAGTTGACAC	0.547													38	114					0	0	0.004878	0	0
MMRN1	22915	broad.mit.edu	37	4	90856447	90856447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:90856447G>A	uc003hst.2	+	6	1687	c.1616G>A	c.(1615-1617)AGC>AAC	p.S539N	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.S281N	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	539					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GAGTCAGTTAGCAATAATGTC	0.363													9	26					0	0	0.006214	0	0
GRID2	2895	broad.mit.edu	37	4	94690535	94690535	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:94690535C>T	uc011cdt.1	+	15	2793	c.2535C>T	c.(2533-2535)TCC>TCT	p.S845S	GRID2_uc011cdu.1_Silent_p.S750S	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	845	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TTGTCCTCTCCTGCTTCATAG	0.493													14	36					0	0	0.003163	0	0
PDLIM5	10611	broad.mit.edu	37	4	95506861	95506861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:95506861C>T	uc003hti.2	+	6	1007	c.856C>T	c.(856-858)CTT>TTT	p.L286F	PDLIM5_uc003htf.2_Missense_Mutation_p.L163F|PDLIM5_uc003htg.2_Missense_Mutation_p.L183F|PDLIM5_uc011cdx.1_Missense_Mutation_p.L183F|PDLIM5_uc003hth.2_Missense_Mutation_p.L177F|PDLIM5_uc003htj.2_5'UTR|PDLIM5_uc003htk.2_Missense_Mutation_p.L183F|PDLIM5_uc011cdy.1_Missense_Mutation_p.L164F|PDLIM5_uc003htl.2_5'UTR	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	286					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		TTTCCGAATCCTTGCCCAGAT	0.468													8	33					0	0	0.006214	0	0
BMPR1B	658	broad.mit.edu	37	4	96036848	96036848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:96036848C>T	uc003htm.3	+	6	533	c.259C>T	c.(259-261)CCT>TCT	p.P87S	BMPR1B_uc010ilb.2_Missense_Mutation_p.P87S|BMPR1B_uc003htn.3_Missense_Mutation_p.P87S	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	87	Extracellular (Potential).				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		CACTCCCATTCCTCATCAAAG	0.363													14	59					0	0	0.004007	0	0
UNC5C	8633	broad.mit.edu	37	4	96256715	96256715	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:96256715G>A	uc003htp.1	-	2	346	c.192C>T	c.(190-192)TTC>TTT	p.F64F	UNC5C_uc010ilc.1_Silent_p.F64F|UNC5C_uc003htq.2_Silent_p.F64F	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	64	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		GCTCAATAAGGAAATGTGGCA	0.413													8	19					0	0	0.003080	0	0
C4orf37	285555	broad.mit.edu	37	4	98480264	98480264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:98480264G>A	uc003htt.1	-	11	1415	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	442											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		TTTCTCCTGGGATATCTGTTT	0.279													22	61					0	0	0.003954	0	0
SLC39A8	64116	broad.mit.edu	37	4	103189132	103189132	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:103189132A>G	uc003hwb.1	-	6	1474	c.945T>C	c.(943-945)AAT>AAC	p.N315N	SLC39A8_uc011ceo.1_Silent_p.N315N|SLC39A8_uc003hwa.1_Silent_p.N248N|SLC39A8_uc003hwc.2_Silent_p.N315N	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	315	Helical; (Potential).					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		CATCGATGAAATTGTGGAGGG	0.502													19	55					0	0	0.007413	0	0
CENPE	1062	broad.mit.edu	37	4	104079922	104079922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:104079922C>T	uc003hxb.1	-	23	2813	c.2723G>A	c.(2722-2724)AGG>AAG	p.R908K	CENPE_uc003hxc.1_Missense_Mutation_p.R883K	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	908	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TGTTTTCTCCCTTTCTACAGT	0.358													9	18					0	0	0.006214	0	0
NDST3	9348	broad.mit.edu	37	4	119161732	119161732	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:119161732G>A	uc003ibx.2	+	11	2575	c.2172G>A	c.(2170-2172)GTG>GTA	p.V724V		NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	724	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						TCTACGAAGTGATCTCAGCAG	0.502													16	24					0	0	0.004990	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951845	119951845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:119951845C>T	uc003icm.3	+	4	2111	c.1915C>T	c.(1915-1917)CCG>TCG	p.P639S	SYNPO2_uc010ina.2_Missense_Mutation_p.P639S|SYNPO2_uc010inb.2_Missense_Mutation_p.P639S|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.P567S	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	639	Pro-rich.					nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GGTTTCAAGTCCGATTGCTGG	0.592													15	38					0	0	0.003163	0	0
FAT4	79633	broad.mit.edu	37	4	126372253	126372253	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:126372253T>G	uc003ifj.3	+	9	10082	c.10082T>G	c.(10081-10083)CTT>CGT	p.L3361R	FAT4_uc011cgp.1_Missense_Mutation_p.L1659R|FAT4_uc003ifi.1_Missense_Mutation_p.L839R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3361	Cadherin 32.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCTGGAATTCTTGATCGAGAA	0.403													27	63					0	0	0.007291	0	0
FAT4	79633	broad.mit.edu	37	4	126411760	126411760	+	Missense_Mutation	SNP	G	A	A	rs148534921		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:126411760G>A	uc003ifj.3	+	17	13783	c.13783G>A	c.(13783-13785)GAA>AAA	p.E4595K	FAT4_uc011cgp.1_Missense_Mutation_p.E2836K|FAT4_uc003ifi.1_Missense_Mutation_p.E2072K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4595	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TATCTATGATGAAACTGATAT	0.483													20	42					0	0	0.010504	0	0
INTU	27152	broad.mit.edu	37	4	128627808	128627808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:128627808C>T	uc003ifk.1	+	12	2025	c.1955C>T	c.(1954-1956)CCC>CTC	p.P652L	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	652										ovary(1)	1						TCTCCAGTCCCCTGTTTGTCT	0.458													29	55					0	0	0.006320	0	0
LARP1B	55132	broad.mit.edu	37	4	129120688	129120688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:129120688G>A	uc003iga.2	+	16	2229	c.2098G>A	c.(2098-2100)GAA>AAA	p.E700K	LARP1B_uc003igc.2_Missense_Mutation_p.E119K|LARP1B_uc010ioa.1_RNA|LARP1B_uc003ige.2_RNA|LARP1B_uc003igd.2_RNA|LARP1B_uc003igf.2_5'UTR	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	700							RNA binding				0						TCCTTCTCATGAACTTTTGAA	0.408													7	17					0	0	0.003080	0	0
PCDH18	54510	broad.mit.edu	37	4	138451129	138451129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:138451129G>A	uc003ihe.3	-	1	2501	c.2114C>T	c.(2113-2115)TCC>TTC	p.S705F	PCDH18_uc003ihf.3_Missense_Mutation_p.S698F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.S485F|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	705	Helical; (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGCTCCTAAGGAAATAATTAT	0.423													19	55					0	0	0.006122	0	0
PCDH18	54510	broad.mit.edu	37	4	138451647	138451647	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:138451647G>A	uc003ihe.3	-	1	1983	c.1596C>T	c.(1594-1596)ATC>ATT	p.I532I	PCDH18_uc003ihf.3_Silent_p.I525I|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.I312I|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	532	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CATGATCAAAGATTCTGAGGG	0.423													22	61					0	0	0.003330	0	0
PCDH18	54510	broad.mit.edu	37	4	138452734	138452734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:138452734G>A	uc003ihe.3	-	1	896	c.509C>T	c.(508-510)TCC>TTC	p.S170F	PCDH18_uc003ihf.3_Missense_Mutation_p.S163F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_5'UTR|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	170	Extracellular (Potential).|Cadherin 2.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGTGTGGAGGGAATTTTCCCC	0.458													9	22					0	0	0.006214	0	0
CLGN	1047	broad.mit.edu	37	4	141317007	141317007	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:141317007C>T	uc011chi.1	-	11	1333	c.1115G>A	c.(1114-1116)TGG>TAG	p.W372*	CLGN_uc003iii.2_Nonsense_Mutation_p.W372*	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	372	2-3.|Lumenal (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					TGGAGGTCTCCATACTCCTTT	0.398													9	36					0	0	0.004482	0	0
OTUD4	54726	broad.mit.edu	37	4	146076605	146076605	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:146076605G>A	uc003ika.3	-	10	774	c.636C>T	c.(634-636)TCC>TCT	p.S212S	OTUD4_uc003ijz.3_Silent_p.S211S	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	276							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					CAGCAGCAATGGAATAATCAC	0.299													6	30					0	0	0.001984	0	0
SMAD1	4086	broad.mit.edu	37	4	146460988	146460988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:146460988G>A	uc003ikc.2	+	3	849	c.433G>A	c.(433-435)GAA>AAA	p.E145K	SMAD1_uc003ikd.2_Missense_Mutation_p.E145K|SMAD1_uc010iov.2_Missense_Mutation_p.E145K|SMAD1_uc011cic.1_Missense_Mutation_p.E145K|SMAD1_uc003ikf.2_RNA	NM_005900	NP_005891	Q15797	SMAD1_HUMAN	Sma- and Mad-related protein 1	145					BMP signaling pathway|embryonic pattern specification|primary miRNA processing|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|nuclear inner membrane	co-SMAD binding|I-SMAD binding|identical protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity			ovary(1)	1	all_hematologic(180;0.151)					AAGACACAGCGAATATAATCC	0.413													11	27					0	0	0.001368	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148968090	148968090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:148968090G>A	uc003ilf.2	+	20	1915	c.1915G>A	c.(1915-1917)GAC>AAC	p.D639N	ARHGAP10_uc003ilg.2_Missense_Mutation_p.D288N|ARHGAP10_uc003ilh.2_Missense_Mutation_p.D220N|ARHGAP10_uc003ili.2_Missense_Mutation_p.D72N	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	639					apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		CAGCAGTCTGGACTCACTTTC	0.507													17	47					0	0	0.007413	0	0
MAB21L2	10586	broad.mit.edu	37	4	151504398	151504398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:151504398G>A	uc003ilw.2	+	1	1322	c.217G>A	c.(217-219)GAA>AAA	p.E73K	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	73					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		TTCGCCCACCGAATTTGAGGT	0.607													11	22					0	0	0.000978	0	0
LRBA	987	broad.mit.edu	37	4	151773485	151773485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:151773485G>A	uc010ipj.2	-	23	3851	c.3377C>T	c.(3376-3378)CCC>CTC	p.P1126L	LRBA_uc003ilt.3_5'Flank|LRBA_uc003ilu.3_Missense_Mutation_p.P1126L	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1126						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					GAGCTCTGTGGGTAGATTAGC	0.398													12	28					0	0	0.002450	0	0
FGA	2243	broad.mit.edu	37	4	155508061	155508061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:155508061C>T	uc003iod.1	-	5	578	c.520G>A	c.(520-522)GAT>AAT	p.D174N	FGA_uc003ioe.1_Missense_Mutation_p.D174N|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	174	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	ATCTTAATATCAATGTCCACC	0.398													11	33					0	0	0.001368	0	0
NPY2R	4887	broad.mit.edu	37	4	156135434	156135434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:156135434G>A	uc003ioq.2	+	2	838	c.343G>A	c.(343-345)GAG>AAG	p.E115K	NPY2R_uc003ior.2_Missense_Mutation_p.E115K	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	115	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				CTTAATGGGGGAGTGGAAAAT	0.512													12	41					0	0	0.004007	0	0
GLRB	2743	broad.mit.edu	37	4	157999189	157999189	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:157999189T>C	uc003ipj.2	+	2	215	c.13T>C	c.(13-15)TTG>CTG	p.L5L		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	5					nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	GAAGTTTTTATTGACAACTGC	0.318													7	10					0	0	0.001984	0	0
GRIA2	2891	broad.mit.edu	37	4	158224908	158224908	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:158224908G>A	uc003ipm.3	+	3	893	c.434G>A	c.(433-435)TGG>TAG	p.W145*	GRIA2_uc011cit.1_Nonsense_Mutation_p.W98*|GRIA2_uc003ipl.3_Nonsense_Mutation_p.W145*|GRIA2_uc003ipk.3_Nonsense_Mutation_p.W98*|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	145	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TACTATCAATGGGACAAGTTT	0.438													30	66					0	0	0.007291	0	0
RXFP1	59350	broad.mit.edu	37	4	159493972	159493972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:159493972G>A	uc003ipz.2	+	2	254	c.172G>A	c.(172-174)GAT>AAT	p.D58N	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_5'UTR|RXFP1_uc010iqo.2_Missense_Mutation_p.D58N|RXFP1_uc011cjb.1_5'UTR|RXFP1_uc010iqk.2_5'UTR|RXFP1_uc011cjc.1_5'UTR|RXFP1_uc011cjd.1_5'UTR|RXFP1_uc010iql.2_5'UTR|RXFP1_uc011cje.1_Missense_Mutation_p.D58N|RXFP1_uc010iqm.2_Missense_Mutation_p.D58N|RXFP1_uc011cjf.1_5'UTR|RXFP1_uc010iqn.2_Intron	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	58	Extracellular (Potential).|LDL-receptor class A.	Calcium.				integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		GAATCAGGCCGATGAGGACAA	0.532													14	38					0	0	0.003163	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160273928	160273928	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:160273928G>A	uc003iqg.3	+	21	3784	c.3474G>A	c.(3472-3474)TCG>TCA	p.S1158S		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1158	Ser-rich.				cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		TTAGCAATTCGTCTTTTGACT	0.483													15	28					0	0	0.004990	0	0
ADAM29	11086	broad.mit.edu	37	4	175897249	175897249	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:175897249G>A	uc003iuc.2	+	5	1243	c.573G>A	c.(571-573)GTG>GTA	p.V191V	ADAM29_uc003iud.2_Silent_p.V191V|ADAM29_uc010irr.2_Silent_p.V191V|ADAM29_uc011cki.1_Silent_p.V191V	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	191					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GTTCTTATGTGGGCTGGTGGA	0.358													15	27					0	0	0.003163	0	0
ASB5	140458	broad.mit.edu	37	4	177138124	177138124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:177138124G>A	uc003iuq.1	-	6	723	c.707C>T	c.(706-708)CCA>CTA	p.P236L	ASB5_uc003iup.1_Missense_Mutation_p.P183L	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	236	ANK 6.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		AGCATGTAATGGAGTATCCCA	0.353													24	66					0	0	0.003330	0	0
ENPP6	133121	broad.mit.edu	37	4	185038029	185038029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:185038029C>T	uc003iwc.2	-	5	977	c.835G>A	c.(835-837)GCC>ACC	p.A279T		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	279	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		TTCCCAGGGGCCGGCCAAAGG	0.562													9	64					0	0	0.006214	0	0
CCDC111	201973	broad.mit.edu	37	4	185603437	185603437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:185603437C>T	uc003iwk.2	+	9	1476	c.1043C>T	c.(1042-1044)CCA>CTA	p.P348L	CCDC111_uc003iwj.2_Missense_Mutation_p.P348L|CCDC111_uc003iwl.2_Missense_Mutation_p.P348L|CCDC111_uc003iwm.2_Missense_Mutation_p.P219L|CCDC111_uc003iwn.2_Intron	NM_152683	NP_689896	Q96LW4	CC111_HUMAN	coiled-coil domain containing 111	348					DNA replication, synthesis of RNA primer		DNA primase activity			central_nervous_system(1)	1		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.00531)|Hepatocellular(41;0.00932)|Renal(120;0.0246)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|all_neural(102;0.131)		all cancers(43;5.84e-27)|Epithelial(43;2.2e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.28e-11)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.03e-05)|Colorectal(24;7.57e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000249)|COAD - Colon adenocarcinoma(29;0.000502)|LUSC - Lung squamous cell carcinoma(40;0.00995)|READ - Rectum adenocarcinoma(43;0.173)		ACATGTGAGCCATCTCAGAAT	0.299													5	18					0	0	0.001984	0	0
ZFP42	132625	broad.mit.edu	37	4	188924167	188924167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:188924167C>T	uc003izg.1	+	3	451	c.206C>T	c.(205-207)TCA>TTA	p.S69L	ZFP42_uc003izh.1_Missense_Mutation_p.S69L|ZFP42_uc003izi.1_Missense_Mutation_p.S69L	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	69					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GATGATTTCTCAGACTGTTAC	0.498													10	32					0	0	0.000978	0	0
TRIML2	205860	broad.mit.edu	37	4	189026057	189026057	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:189026057C>T	uc003izl.2	-	2	105	c.69G>A	c.(67-69)TCG>TCA	p.S23S	TRIML2_uc011cle.1_Silent_p.S73S|TRIML2_uc011clf.1_Silent_p.S73S	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	23	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GTTTCTCCCTCGATGTGTTCA	0.403													20	41					0	0	0.008871	0	0
SLC9A3	6550	broad.mit.edu	37	5	488572	488572	+	Silent	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:488572C>A	uc003jbe.2	-	3	646	c.534G>T	c.(532-534)CTG>CTT	p.L178L	SLC9A3_uc011clx.1_Silent_p.L178L	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	178	Extracellular (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			GGAAGTCCAGCAGCCCAATCT	0.677													3	5					0.00909568	0.0092172	0.009096	1	0
TERT	7015	broad.mit.edu	37	5	1260658	1260659	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:1260658_1260659CC>TT	uc003jcb.1	-	12	2958_2959	c.2900_2901GG>AA	c.(2899-2901)GGG>GAA	p.G967E	TERT_uc003jbz.1_Missense_Mutation_p.G163E|TERT_uc003jca.1_Missense_Mutation_p.G955E|TERT_uc003jcc.1_Missense_Mutation_p.G904E|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	967	CTE.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GCATGTTCCTCCCAGCCTTGAA	0.574									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				16	32					0	0	0.004672	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5242178	5242178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:5242178G>A	uc003jdl.2	+	17	2674	c.2536G>A	c.(2536-2538)GGA>AGA	p.G846R	ADAMTS16_uc003jdk.1_Missense_Mutation_p.G846R	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	846	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						GCTGTTTCAGGGAAGGAACCC	0.488													9	40					0	0	0.008291	0	0
CTNND2	1501	broad.mit.edu	37	5	11022919	11022919	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:11022919G>A	uc003jfa.1	-	17	3106	c.2961C>T	c.(2959-2961)ATC>ATT	p.I987I	CTNND2_uc010itt.2_Silent_p.I896I|CTNND2_uc011cmy.1_Silent_p.I650I|CTNND2_uc011cmz.1_Silent_p.I554I|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.I579I	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	987	ARM 9.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CCAACTTCTCGATGCCACCGG	0.498													13	36					0	0	0.002450	0	0
DNAH5	1767	broad.mit.edu	37	5	13729599	13729599	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:13729599C>T	uc003jfd.2	-	69	11874	c.11832G>A	c.(11830-11832)CTG>CTA	p.L3944L	DNAH5_uc003jfc.2_Silent_p.L112L	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3944					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCACCAAATTCAGCCATGTTA	0.373									Kartagener_syndrome				13	28					0	0	0.001855	0	0
DNAH5	1767	broad.mit.edu	37	5	13751222	13751222	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:13751222G>A	uc003jfd.2	-	65	11218	c.11176C>T	c.(11176-11178)CAG>TAG	p.Q3726*	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3726	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCCAGTAACTGATCTTCTAGA	0.453									Kartagener_syndrome				15	42					0	0	0.003163	0	0
DNAH5	1767	broad.mit.edu	37	5	13769624	13769624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:13769624C>T	uc003jfd.2	-	57	9748	c.9706G>A	c.(9706-9708)GAT>AAT	p.D3236N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3236	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCGGCTTTATCGTTGGCCACT	0.418									Kartagener_syndrome				20	57					0	0	0.008871	0	0
DNAH5	1767	broad.mit.edu	37	5	13839615	13839615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:13839615G>A	uc003jfd.2	-	35	5774	c.5732C>T	c.(5731-5733)CCC>CTC	p.P1911L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1911	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAAGTCCATGGGACTCTTGAT	0.358									Kartagener_syndrome				17	28					0	0	0.006122	0	0
DNAH5	1767	broad.mit.edu	37	5	13928256	13928256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:13928256C>T	uc003jfd.2	-	3	266	c.224G>A	c.(223-225)GGA>GAA	p.G75E	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	75	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCGGAGACCTCCAACAGCAAA	0.338									Kartagener_syndrome				11	42					0	0	0.001855	0	0
ANKH	56172	broad.mit.edu	37	5	14758637	14758637	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:14758637C>T	uc003jfm.3	-	3	715	c.384G>A	c.(382-384)ACG>ACA	p.T128T		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	128	Extracellular (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						AGGCCCTTCTCGTCTTGCTCC	0.418													8	24					0	0	0.004482	0	0
CDH18	1016	broad.mit.edu	37	5	19483617	19483617	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:19483617T>C	uc003jgc.2	-	11	2052	c.1675A>G	c.(1675-1677)ACT>GCT	p.T559A	CDH18_uc003jgd.2_Missense_Mutation_p.T559A|CDH18_uc011cnm.1_Intron	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	559	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TCCTGAACAGTTCGACTAAAT	0.458													5	12					0	0	0.000602	0	0
CDH12	1010	broad.mit.edu	37	5	22078763	22078763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:22078763G>A	uc010iuc.2	-	2	481	c.23C>T	c.(22-24)TCC>TTC	p.S8F	CDH12_uc011cno.1_Missense_Mutation_p.S8F|CDH12_uc003jgk.2_Missense_Mutation_p.S8F	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	8					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						GAGAAGCAGGGATAAACAGTT	0.438										HNSCC(59;0.17)			30	68					0	0	0.006320	0	0
PRDM9	56979	broad.mit.edu	37	5	23526679	23526679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:23526679G>A	uc003jgo.2	+	11	1664	c.1482G>A	c.(1480-1482)ATG>ATA	p.M494I		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	494					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AAAGAATAATGGAAGAAGAGT	0.443										HNSCC(3;0.000094)			11	13					0	0	0.008291	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965601	35965601	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:35965601C>A	uc003jjv.1	-	4	887	c.730G>T	c.(730-732)GCA>TCA	p.A244S	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.A244S|UGT3A1_uc011cor.1_Missense_Mutation_p.A210S|UGT3A1_uc003jjy.1_Missense_Mutation_p.A190S	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	244	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CACAACTCTGCTTTCAGTAGA	0.448													11	30					3.07112e-06	3.12677e-06	0.000978	1	0
NUP155	9631	broad.mit.edu	37	5	37293076	37293076	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:37293076C>A	uc003jku.1	-	34	4060	c.3942G>T	c.(3940-3942)TGG>TGT	p.W1314C	NUP155_uc003jkt.1_Missense_Mutation_p.W1255C|NUP155_uc010iuz.1_Missense_Mutation_p.W1250C	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	1314					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCATTCTGTTCCAGAATGGAT	0.318													22	56					9.04412e-07	9.22038e-07	0.004656	1	0
OSMR	9180	broad.mit.edu	37	5	38924670	38924671	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:38924670_38924671CC>AT	uc003jln.1	+	14	2384_2385	c.2017_2018CC>AT	c.(2017-2019)CCA>ATA	p.P673I	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	673	Fibronectin type-III 4.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GCAGTGCCACCCACGATTTGAA	0.361													11	51					0	0	0.004672	0	0
CARD6	84674	broad.mit.edu	37	5	40843599	40843599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:40843599G>A	uc003jmg.2	+	2	704	c.629G>A	c.(628-630)GGA>GAA	p.G210E		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	210	Asp/Glu-rich.				apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						TTATACTTAGGAAAAGAGGAA	0.398													9	15					0	0	0.006214	0	0
CARD6	84674	broad.mit.edu	37	5	40853623	40853624	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:40853623_40853624AC>TT	uc003jmg.2	+	3	2264_2265	c.2189_2190AC>TT	c.(2188-2190)AAC>ATT	p.N730I		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	730					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						GTTCTAGAGAACTCCTGGCTCT	0.5													45	157					0	0	0.004672	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41061813	41061813	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:41061813G>A	uc003jmj.3	-	6	964	c.474C>T	c.(472-474)TTC>TTT	p.F158F		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	158							binding			ovary(6)|central_nervous_system(2)	8						TGGCTTTGCTGAATTTCTCAA	0.418													6	25					0	0	0.001168	0	0
C6	729	broad.mit.edu	37	5	41159280	41159280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:41159280C>T	uc003jmk.2	-	12	1970	c.1760G>A	c.(1759-1761)CGA>CAA	p.R587Q	C6_uc003jml.1_Missense_Mutation_p.R587Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	587	TSP type-1 3.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATTGCATTCTCGGGTTCTCGA	0.493													23	44					0	0	0.002299	0	0
C6	729	broad.mit.edu	37	5	41159289	41159289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:41159289G>A	uc003jmk.2	-	12	1961	c.1751C>T	c.(1750-1752)TCG>TTG	p.S584L	C6_uc003jml.1_Missense_Mutation_p.S584L	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	584	TSP type-1 3.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TCGGGTTCTCGATCTCTTATA	0.498													21	38					0	0	0.010504	0	0
PLCXD3	345557	broad.mit.edu	37	5	41381969	41381969	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:41381969G>A	uc003jmm.1	-	2	873	c.771C>T	c.(769-771)GTC>GTT	p.V257V		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	257					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						CCACCCCTTTGACCACAGTGC	0.363													20	57					0	0	0.003330	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382154	41382154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:41382154G>A	uc003jmm.1	-	2	688	c.586C>T	c.(586-588)CAT>TAT	p.H196Y		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	196	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						ACTGGACTATGGTAGAAGACC	0.498													19	51					0	0	0.006122	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382377	41382377	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:41382377G>A	uc003jmm.1	-	2	465	c.363C>T	c.(361-363)GTC>GTT	p.V121V		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	121	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGCCTTCATTGACTTTGGCAC	0.433													19	42					0	0	0.008871	0	0
EMB	133418	broad.mit.edu	37	5	49701641	49701641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:49701641C>T	uc003jom.2	-	5	767	c.518G>A	c.(517-519)GGG>GAG	p.G173E	EMB_uc010ivq.2_5'Flank|EMB_uc003jol.2_Missense_Mutation_p.G104E|EMB_uc011cpy.1_Missense_Mutation_p.G123E|EMB_uc010ivr.2_Missense_Mutation_p.G119E	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	173	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				AGTAGAATCCCCTACGTAAGA	0.353													13	22					0	0	0.001855	0	0
EMB	133418	broad.mit.edu	37	5	49706754	49706754	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:49706754G>A	uc003jom.2	-	4	678	c.429C>T	c.(427-429)TTC>TTT	p.F143F	EMB_uc003jol.2_Silent_p.F74F|EMB_uc011cpy.1_Silent_p.F93F|EMB_uc010ivr.2_Silent_p.F89F	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	143	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				CCTCTCGAAAGAAACAAGAAT	0.289													8	15					0	0	0.008291	0	0
NDUFAF2	91942	broad.mit.edu	37	5	60241098	60241098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:60241098G>A	uc003jsp.3	+	1	143	c.16G>A	c.(16-18)GAT>AAT	p.D6N	NDUFAF2_uc003jso.3_RNA|ERCC8_uc003jsm.3_5'Flank|ERCC8_uc003jsl.3_5'Flank|ERCC8_uc011cqp.1_5'Flank|ERCC8_uc003jsn.3_5'Flank	NM_174889	NP_777549	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	6						membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity				0		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				TTGGTCTCAGGATTTGTTCCG	0.607													6	11					0	0	0.001168	0	0
HTR1A	3350	broad.mit.edu	37	5	63257040	63257040	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:63257040G>A	uc011cqt.1	-	1	507	c.507C>T	c.(505-507)ATC>ATT	p.I169I		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	169	Helical; Name=4; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GCATGGGCGGGATAGAGATGA	0.612													44	93					0	0	0.003610	0	0
RNF180	285671	broad.mit.edu	37	5	63509989	63509989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:63509989C>T	uc003jti.2	+	4	946	c.836C>T	c.(835-837)TCC>TTC	p.S279F	RNF180_uc003jth.3_Missense_Mutation_p.S279F|RNF180_uc010iws.2_Intron	NM_001113561	NP_001107033	Q86T96	RN180_HUMAN	ring finger protein 180 isoform 1	279	Cytoplasmic (Potential).					integral to membrane|nuclear envelope	zinc ion binding				0		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0848)|Colorectal(97;0.234)		Lung(70;0.114)		AATAGCTATTCCTTTCAGAAT	0.403													15	41					0	0	0.006122	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64569190	64569190	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:64569190G>A	uc003jtp.2	-	12	2411	c.1597C>T	c.(1597-1599)CAA>TAA	p.Q533*	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Nonsense_Mutation_p.Q154*	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	533	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TTCCCAGTTTGACACAGTGTC	0.433													41	101					0	0	0.003610	0	0
SFRS12	140890	broad.mit.edu	37	5	65470862	65470862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:65470862C>T	uc003juo.2	+	11	1885	c.1225C>T	c.(1225-1227)CCC>TCC	p.P409S	SFRS12_uc003jun.2_Missense_Mutation_p.P525S|SFRS12_uc010iwy.2_Missense_Mutation_p.P409S	NM_139168	NP_631907	Q8WXA9	SREK1_HUMAN	splicing factor, arginine/serine-rich 12 isoform	409	Arg/Glu/Lys/Ser-rich.				mRNA processing|RNA splicing	spliceosomal complex	nucleic acid binding|nucleotide binding|protein binding				0		Lung NSC(167;9.34e-06)|Prostate(74;0.00187)|Ovarian(174;0.0545)|Breast(144;0.0928)|Colorectal(97;0.234)		Lung(70;0.00449)		ATCTCCGTCCCCCAGGAGGTA	0.338													9	13					0	0	0.006214	0	0
MARVELD2	153562	broad.mit.edu	37	5	68715802	68715802	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:68715802G>T	uc003jwq.2	+	2	649	c.590G>T	c.(589-591)GGT>GTT	p.G197V	MARVELD2_uc010ixf.2_Missense_Mutation_p.G197V|MARVELD2_uc003jwr.1_Missense_Mutation_p.G197V|MARVELD2_uc003jws.1_RNA	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	197	MARVEL.|Helical; (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		AGAATACTGGGTGTGGTGGAG	0.493													28	75					4.22769e-11	4.3188e-11	0.006320	1	0
ZNF366	167465	broad.mit.edu	37	5	71739801	71739801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:71739801C>T	uc003kce.1	-	5	2203	c.2017G>A	c.(2017-2019)GGA>AGA	p.G673R		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	673					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TCCCATTCTCCCTTGGATGCA	0.612													59	116					0	0	0.003610	0	0
ZNF366	167465	broad.mit.edu	37	5	71756160	71756160	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:71756160C>T	uc003kce.1	-	2	1350	c.1164G>A	c.(1162-1164)CGG>CGA	p.R388R		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	388					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GGATGGGGCCCCGGTGCGTGG	0.612													14	33					0	0	0.001855	0	0
FAM169A	26049	broad.mit.edu	37	5	74130407	74130407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:74130407C>T	uc003kdm.2	-	5	377	c.334G>A	c.(334-336)GAG>AAG	p.E112K	FAM169A_uc010izm.2_Missense_Mutation_p.E112K|FAM169A_uc003kdl.2_Intron	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	112											0						ACCACTCTCTCCCCAAGAGTG	0.408													3	13					0	0	0.009096	0	0
GPR98	84059	broad.mit.edu	37	5	89992916	89992916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:89992916G>A	uc003kju.2	+	34	8204	c.8108G>A	c.(8107-8109)GGA>GAA	p.G2703E	GPR98_uc003kjt.2_Missense_Mutation_p.G409E|GPR98_uc003kjv.2_Missense_Mutation_p.G303E	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2703	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AATGTGGCAGGAATTGTTAGC	0.393													33	66					0	0	0.007835	0	0
MCTP1	79772	broad.mit.edu	37	5	94134766	94134766	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:94134766C>T	uc003kkx.2	-	18	2508	c.2508G>A	c.(2506-2508)TGG>TGA	p.W836*	MCTP1_uc003kkv.2_Nonsense_Mutation_p.W615*|MCTP1_uc003kkw.2_Intron|MCTP1_uc003kkz.2_Nonsense_Mutation_p.W497*|MCTP1_uc003kku.2_Nonsense_Mutation_p.W352*	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	836					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		AGAAGTAGTTCCATGTCAATA	0.388													6	19					0	0	0.001168	0	0
ERAP2	64167	broad.mit.edu	37	5	96224936	96224936	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:96224936T>C	uc003kmq.2	+	5	1607	c.897T>C	c.(895-897)GCT>GCC	p.A299A	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Silent_p.A299A|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Silent_p.A248A|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	299	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		CACATTATGCTTTGCAGGCAT	0.393													13	37					0	0	0.002450	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101631753	101631753	+	Missense_Mutation	SNP	C	T	T	rs138439271		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:101631753C>T	uc003knm.2	-	1	501	c.214G>A	c.(214-216)GAA>AAA	p.E72K		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	72	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		AGCTTCTCTTCGGAGACATTG	0.582													15	35					0	0	0.004990	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111595649	111595649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:111595649C>T	uc003kpv.1	-	8	944	c.670G>A	c.(670-672)GGA>AGA	p.G224R		NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	224	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		GGAGTTAATCCTAAGAAATAC	0.358													9	25					0	0	0.008291	0	0
DMXL1	1657	broad.mit.edu	37	5	118485868	118485868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:118485868C>T	uc003ksd.2	+	18	4527	c.4346C>T	c.(4345-4347)ACT>ATT	p.T1449I	DMXL1_uc010jcl.1_Missense_Mutation_p.T1449I	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1449										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		CTTTTTCAGACTCAACTTCTA	0.338													9	24					0	0	0.004482	0	0
FSTL4	23105	broad.mit.edu	37	5	132535325	132535325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:132535325C>T	uc003kyn.1	-	16	2209	c.1991G>A	c.(1990-1992)AGC>AAC	p.S664N	FSTL4_uc003kym.1_Missense_Mutation_p.S313N	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	664						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGAGGCGGGGCTGTCCTGTCG	0.637													12	29					0	0	0.000978	0	0
TRPC7	57113	broad.mit.edu	37	5	135561043	135561043	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:135561043C>T	uc003lbn.1	-	9	2263	c.2260_splice	c.e9-1	p.K754_splice	TRPC7_uc010jef.1_Splice_Site_p.K691_splice|TRPC7_uc010jeg.1_Splice_Site|TRPC7_uc010jeh.1_Splice_Site_p.K685_splice|TRPC7_uc010jei.1_Splice_Site_p.K630_splice|TRPC7_uc010jej.1_Splice_Site_p.K306_splice	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,						axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGCGAGTCTTCTGGATAAAAC	0.448													6	9					0	0	0.003080	0	0
WNT8A	7478	broad.mit.edu	37	5	137426367	137426367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:137426367G>A	uc003lcd.1	+	6	666	c.661G>A	c.(661-663)GAT>AAT	p.D221N	BRD8_uc003lcc.1_Intron|WNT8A_uc011cyj.1_Missense_Mutation_p.D239N|WNT8A_uc011cyk.1_Missense_Mutation_p.D239N	NM_058244	NP_490645	Q9H1J5	WNT8A_HUMAN	wingless-type MMTV integration site family,	221					brain segmentation|canonical Wnt receptor signaling pathway involved in neural crest cell differentiation|cell migration involved in gastrulation|dorsal/ventral pattern formation|ectoderm development|endoderm development|eye development|hindbrain development|mesodermal cell fate commitment|negative regulation of Wnt receptor signaling pathway|neural crest cell fate commitment|neural plate pattern specification|notochord development|palate development|polarity specification of anterior/posterior axis|polarity specification of proximal/distal axis|positive regulation of fibroblast growth factor receptor signaling pathway|regulation of transcription involved in anterior/posterior axis specification|response to retinoic acid|somitogenesis|spinal cord anterior/posterior patterning|tail morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			ovary(1)|lung(1)|breast(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			AATTGAAATGGATAAGCGGCA	0.567													6	20					0	0	0.001168	0	0
SLC4A9	83697	broad.mit.edu	37	5	139740441	139740441	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:139740441G>A	uc003lfm.2	+	2	382	c.347G>A	c.(346-348)TGG>TAG	p.W116*	SLC4A9_uc003lfj.2_Nonsense_Mutation_p.W92*|SLC4A9_uc011czg.1_Nonsense_Mutation_p.W92*|SLC4A9_uc003lfl.2_Nonsense_Mutation_p.W92*|SLC4A9_uc003lfk.2_Nonsense_Mutation_p.W92*	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	116	Cytoplasmic (Potential).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGGCCGGTGGAGTGCCCCC	0.622													13	18					0	0	0.004007	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175498	140175498	+	Missense_Mutation	SNP	G	A	A	rs17844246		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140175498G>A	uc003lhd.2	+	1	1055	c.949G>A	c.(949-951)GAG>AAG	p.E317K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E317K|PCDHA2_uc011czy.1_Missense_Mutation_p.E317K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	317	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAGTCCTACGAGATTCAGGT	0.388													8	20					0	0	0.004482	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202658	140202658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140202658C>T	uc003lhl.2	+	1	1298	c.1298C>T	c.(1297-1299)TCG>TTG	p.S433L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S433L|PCDHA5_uc003lhj.1_Missense_Mutation_p.S433L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	433	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTCGCCTTCGCTGTGGGCC	0.637													36	90					0	0	0.005524	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203619	140203619	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140203619G>A	uc003lhl.2	+	1	2259	c.2259G>A	c.(2257-2259)AGG>AGA	p.R753R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.R753R|PCDHA5_uc003lhj.1_Silent_p.R753R	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	753	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCAGCAGAGGAGACAGAGGG	0.632													18	35					0	0	0.004990	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249718	140249718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140249718G>A	uc003lia.2	+	1	1888	c.1030G>A	c.(1030-1032)GAT>AAT	p.D344N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.D344N	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	344	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACACCAACGATAACTCTCC	0.512													11	40					0	0	0.002450	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480243	140480243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140480243G>A	uc003lio.2	+	1	10	c.10G>A	c.(10-12)GGA>AGA	p.G4R	uc003lin.2_RNA	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	4					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AATGGAGGCGGGAGGAGAGCG	0.522													11	39					0	0	0.002450	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481080	140481080	+	Missense_Mutation	SNP	C	T	T	rs17844390		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140481080C>T	uc003lio.2	+	1	847	c.847C>T	c.(847-849)CAT>TAT	p.H283Y	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	283	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCATTTTTTCATGCTTCTGA	0.358													8	31					0	0	0.006214	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481765	140481765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140481765G>A	uc003lio.2	+	1	1532	c.1532G>A	c.(1531-1533)GGC>GAC	p.G511D	uc003lin.2_RNA	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	511	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGGACAACGGCCACCTGTTT	0.667													25	56					0	0	0.005443	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503114	140503114	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140503114C>T	uc003lip.1	+	1	1534	c.1534C>T	c.(1534-1536)CTG>TTG	p.L512L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	512	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAACGGCCACCTGTTCGCCCT	0.692													22	87					0	0	0.003271	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558451	140558451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140558451C>T	uc011dai.1	+	1	1022	c.836C>T	c.(835-837)TCC>TTC	p.S279F	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	279	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAGAGATTTCCTATTCACTT	0.413													21	129					0	0	0.010504	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711179	140711179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140711179G>A	uc003lji.1	+	1	928	c.928G>A	c.(928-930)GAA>AAA	p.E310K	PCDHGA1_uc011dan.1_Missense_Mutation_p.E310K	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	310	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTAGATTTCGAAGAATACAA	0.373													10	15					0	0	0.006214	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140795001	140795001	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140795001C>T	uc003lkl.1	+	1	2259	c.2259C>T	c.(2257-2259)TTC>TTT	p.F753F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Silent_p.F753F|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	753	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGGGCTTTCCTGCAGACCT	0.627													13	39					0	0	0.001855	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140810551	140810551	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140810551C>T	uc003lkt.1	+	1	394	c.225C>T	c.(223-225)TTC>TTT	p.F75F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.F75F	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	75	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCAGCTTTTCGCCCTGAATC	0.632													28	57					0	0	0.007291	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140870544	140870544	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:140870544C>T	uc003lla.1	+	1	1737	c.1737C>T	c.(1735-1737)CTC>CTT	p.L579L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Silent_p.L579L	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	579	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCAGCGTCTCCCTCGCTCTG	0.587													7	28					0	0	0.004482	0	0
ARAP3	64411	broad.mit.edu	37	5	141052692	141052692	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:141052692G>A	uc003llm.2	-	7	1059	c.981C>T	c.(979-981)TTC>TTT	p.F327F	ARAP3_uc011dbe.1_5'UTR|ARAP3_uc003lln.2_Silent_p.F249F|ARAP3_uc003llo.1_Silent_p.F327F	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	327	PH 1.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CACCCTTAGGGAAGGGGTCCT	0.552													5	30					0	0	0.003080	0	0
PCDH1	5097	broad.mit.edu	37	5	141243015	141243015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:141243015C>T	uc003llq.2	-	3	2998	c.2881G>A	c.(2881-2883)GGC>AGC	p.G961S	PCDH1_uc003llp.2_Missense_Mutation_p.G961S|PCDH1_uc011dbf.1_Missense_Mutation_p.G939S	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	961	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		TCAGGGCTGCCTGGTGGGTAG	0.637													7	16					0	0	0.003080	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439502	145439502	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:145439502C>T	uc003lnt.2	+	9	1867	c.1629C>T	c.(1627-1629)ACC>ACT	p.T543T	SH3RF2_uc011dbl.1_Silent_p.T543T|SH3RF2_uc011dbm.1_Silent_p.T28T|SH3RF2_uc003lnu.2_Silent_p.T34T|SH3RF2_uc011dbn.1_Silent_p.T34T|SH3RF2_uc011dbo.1_5'UTR	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	543							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCAGCCCCACCATGGTCCTTC	0.617													17	34					0	0	0.004990	0	0
FBXO38	81545	broad.mit.edu	37	5	147821539	147821539	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:147821539C>G	uc003lpf.1	+	22	3516	c.3396C>G	c.(3394-3396)ATC>ATG	p.I1132M	FBXO38_uc003lpg.1_Missense_Mutation_p.I1057M|FBXO38_uc003lph.2_Missense_Mutation_p.I887M	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	1132						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGGCACTATCTATGCTCCTA	0.383													4	15					0	0	0.000602	0	0
ABLIM3	22885	broad.mit.edu	37	5	148630942	148630942	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:148630942C>T	uc003lpy.2	+	21	2060	c.1809C>T	c.(1807-1809)TTC>TTT	p.F603F	ABLIM3_uc003lpz.1_Silent_p.F603F|ABLIM3_uc003lqa.1_Silent_p.F500F|ABLIM3_uc003lqb.2_Silent_p.F492F|ABLIM3_uc003lqc.1_Silent_p.F570F|ABLIM3_uc003lqd.1_Silent_p.F508F|ABLIM3_uc003lqf.2_Silent_p.F492F|ABLIM3_uc003lqe.1_Silent_p.F492F	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	603					axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGACCTCTTCCACTACGACA	0.582													12	16					0	0	0.002450	0	0
NDST1	3340	broad.mit.edu	37	5	149901282	149901282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:149901282G>A	uc003lsk.3	+	2	968	c.466G>A	c.(466-468)GAC>AAC	p.D156N	NDST1_uc011dcj.1_Missense_Mutation_p.D156N|NDST1_uc003lsl.2_Missense_Mutation_p.D156N	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	156	Heparan sulfate N-deacetylase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGAGCTGCTGGACAAGTACTG	0.572													39	98					0	0	0.002852	0	0
ZNF300	91975	broad.mit.edu	37	5	150276037	150276037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:150276037G>A	uc003lsy.1	-	6	1031	c.764C>T	c.(763-765)TCC>TTC	p.S255F	IRGM_uc011dcl.1_Intron	NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTGAATAAGGGATTGTGTATT	0.353													20	48					0	0	0.007413	0	0
FAT2	2196	broad.mit.edu	37	5	150922197	150922197	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:150922197G>A	uc003lue.3	-	9	8504	c.8491C>T	c.(8491-8493)CAG>TAG	p.Q2831*	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2831	Extracellular (Potential).|Cadherin 25.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TAGCTCACCTGGCCATCTCTC	0.517													19	28					0	0	0.001882	0	0
ITK	3702	broad.mit.edu	37	5	156670802	156670802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:156670802G>A	uc003lwo.1	+	12	1312	c.1230G>A	c.(1228-1230)ATG>ATA	p.M410I		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	410	Protein kinase.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTGAAGTAATGATGTGAGTGC	0.468			T	SYK	peripheral T-cell lymphoma								52	146					0	0	0.003610	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159781847	159781847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:159781847C>T	uc003lyd.2	-	2	311	c.307G>A	c.(307-309)GGA>AGA	p.G103R		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	58	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCCATTCGTCCCATCATTCCT	0.662													6	10					0	0	0.001168	0	0
GABRA1	2554	broad.mit.edu	37	5	161277864	161277864	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:161277864C>T	uc010jiw.2	+	3	516	c.48C>T	c.(46-48)CTC>CTT	p.L16L	GABRA1_uc010jix.2_Silent_p.L16L|GABRA1_uc010jiy.2_Silent_p.L16L|GABRA1_uc003lyx.3_Silent_p.L16L|GABRA1_uc010jiz.2_Silent_p.L16L|GABRA1_uc010jja.2_Silent_p.L16L|GABRA1_uc010jjb.2_Silent_p.L16L	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	16					gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	CCTGGATCCTCCTTCTGAGCA	0.423													13	55					0	0	0.003163	0	0
GABRA1	2554	broad.mit.edu	37	5	161302643	161302643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:161302643G>A	uc010jiw.2	+	7	1022	c.554G>A	c.(553-555)GGA>GAA	p.G185E	GABRA1_uc010jix.2_Missense_Mutation_p.G185E|GABRA1_uc010jiy.2_Missense_Mutation_p.G185E|GABRA1_uc003lyx.3_Missense_Mutation_p.G185E|GABRA1_uc010jiz.2_Missense_Mutation_p.G185E|GABRA1_uc010jja.2_Missense_Mutation_p.G185E|GABRA1_uc010jjb.2_Missense_Mutation_p.G185E	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	185	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	CTAAAATTTGGAAGTTGTGAG	0.393													12	40					0	0	0.003163	0	0
ODZ2	57451	broad.mit.edu	37	5	167642239	167642239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:167642239G>A	uc010jjd.2	+	21	4013	c.4013G>A	c.(4012-4014)GGA>GAA	p.G1338E	ODZ2_uc003lzr.3_Missense_Mutation_p.G1108E|ODZ2_uc003lzt.3_Missense_Mutation_p.G711E|ODZ2_uc010jje.2_Missense_Mutation_p.G602E	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGCGGGGATGGAGGGAAGGCC	0.557													28	61					0	0	0.002096	0	0
CDHR2	54825	broad.mit.edu	37	5	176002512	176002512	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:176002512C>T	uc003mem.1	+	10	840	c.774C>T	c.(772-774)ACC>ACT	p.T258T	CDHR2_uc003men.1_Silent_p.T258T	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	258	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						TCCAGGGAACCTCGGTGCTGA	0.632													24	60					0	0	0.005443	0	0
WRNIP1	56897	broad.mit.edu	37	6	2783763	2783763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:2783763G>A	uc003mtz.2	+	5	1801	c.1610G>A	c.(1609-1611)CGG>CAG	p.R537Q	WRNIP1_uc003mua.2_Missense_Mutation_p.R512Q	NM_020135	NP_064520	Q96S55	WRIP1_HUMAN	Werner helicase interacting protein isoform 1	537					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA-dependent DNA replication initiation	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|DNA binding|metal ion binding|protein binding			ovary(1)|pancreas(1)	2	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				TACGTGGCACGGAGGCTTGTC	0.602													5	25					0	0	0.000602	0	0
FAM50B	26240	broad.mit.edu	37	6	3850849	3850849	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:3850849C>T	uc003mvu.2	+	2	916	c.804C>T	c.(802-804)TTC>TTT	p.F268F		NM_012135	NP_036267	Q9Y247	FA50B_HUMAN	family with sequence similarity 50, member B	268						nucleus				pancreas(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TCTTCAGCTTCGATGTGCACG	0.607													11	46					0	0	0.008291	0	0
DSP	1832	broad.mit.edu	37	6	7581388	7581388	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:7581388G>A	uc003mxp.1	+	23	5244	c.4965G>A	c.(4963-4965)AGG>AGA	p.R1655R	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1655	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AAGAGCTGAGGAGGCTCTCTT	0.552													25	81					0	0	0.003954	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7987110	7987110	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:7987110A>G	uc003mxx.3	+	1	776	c.341A>G	c.(340-342)AAC>AGC	p.N114S	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GAAGGGAGCAACCTGACCCCT	0.527													8	26					0	0	0.003080	0	0
HIVEP1	3096	broad.mit.edu	37	6	12122172	12122172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:12122172C>T	uc003nac.2	+	4	2323	c.2144C>T	c.(2143-2145)ACC>ATC	p.T715I	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	715					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GCTCTTGTCACCACGTCAACA	0.532													5	38					0	0	0.001168	0	0
DCDC2	51473	broad.mit.edu	37	6	24301956	24301956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:24301956C>T	uc003ndx.2	-	4	846	c.544G>A	c.(544-546)GGG>AGG	p.G182R	DCDC2_uc003ndy.2_Missense_Mutation_p.G182R	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	182	Doublecortin 2.				cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				TGAACAGCCCCGCTCCTCAGA	0.368													31	103					0	0	0.002836	0	0
SLC17A1	6568	broad.mit.edu	37	6	25811773	25811773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:25811773C>T	uc003nfh.3	-	10	1147	c.1031G>A	c.(1030-1032)GGA>GAA	p.G344E	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.G342E|SLC17A1_uc010jqc.1_Missense_Mutation_p.G288E	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	344	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AAGGAGAAATCCTGGGGAGTG	0.473													13	50					0	0	0.001368	0	0
HIST1H2BB	3018	broad.mit.edu	37	6	26043697	26043697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:26043697C>T	uc003nfu.2	-	1	189	c.189G>A	c.(187-189)ATG>ATA	p.M63I	HIST1H3C_uc003nfv.2_5'Flank	NM_021062	NP_066406	P33778	H2B1B_HUMAN	histone cluster 1, H2bb	63					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CGAAGGAATTCATGATCCCCA	0.552													33	130					0	0	0.002836	0	0
HFE	3077	broad.mit.edu	37	6	26091188	26091188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:26091188C>T	uc003nfx.1	+	2	356	c.196C>T	c.(196-198)CGC>TGC	p.R66C	HFE_uc003nfy.1_Missense_Mutation_p.R43C|HFE_uc010jqe.1_Missense_Mutation_p.R66C|HFE_uc003nfz.1_Intron|HFE_uc003ngd.1_Intron|HFE_uc003nga.1_Missense_Mutation_p.R66C|HFE_uc003ngb.1_Missense_Mutation_p.R66C|HFE_uc003ngc.1_Missense_Mutation_p.R66C|HFE_uc003nge.1_Intron|HFE_uc003ngf.1_Intron	NM_000410	NP_000401	Q30201	HFE_HUMAN	hemochromatosis protein isoform 1 precursor	66	Extracellular (Potential).|Alpha-1.		R -> C (in HFE).		antigen processing and presentation of peptide antigen via MHC class I|cellular iron ion homeostasis|immune response|iron ion transport|protein complex assembly|receptor-mediated endocytosis	apical part of cell|basal part of cell|cytoplasmic vesicle|early endosome|integral to plasma membrane|MHC class I protein complex|perinuclear region of cytoplasm|recycling endosome	protein binding				0						TCATGAGAGTCGCCGTGTGGA	0.522									Hemochromatosis				42	43					0	0	0.009718	0	0
HIST1H1T	3010	broad.mit.edu	37	6	26107822	26107822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:26107822C>T	uc003ngj.2	-	1	543	c.500G>A	c.(499-501)GGG>GAG	p.G167E		NM_005323	NP_005314	P22492	H1T_HUMAN	histone cluster 1, H1t	167					cell differentiation|multicellular organismal development|nucleosome assembly|spermatogenesis	nucleosome	DNA binding			ovary(2)	2						AGCCTTTCTCCCGCTCCTAAC	0.468													21	91					0	0	0.001882	0	0
OR2B2	81697	broad.mit.edu	37	6	27879944	27879944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:27879944C>T	uc011dkw.1	-	1	154	c.154G>A	c.(154-156)GAT>AAT	p.D52N		NM_033057	NP_149046	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGTTTGAAATCCACATGTGAC	0.393													7	36					0	0	0.001984	0	0
HLA-G	3135	broad.mit.edu	37	6	29796437	29796437	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:29796437T>C	uc003nnw.2	+	4	639	c.461T>C	c.(460-462)CTG>CCG	p.L154P	HLA-G_uc011dmb.1_Missense_Mutation_p.L126P|HLA-G_uc003raj.3_Missense_Mutation_p.L159P|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	154	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						AACGAGGACCTGCGCTCCTGG	0.622													19	78					0	0	0.007413	0	0
TRIM39	56658	broad.mit.edu	37	6	30298623	30298623	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:30298623C>T	uc010jrz.2	+	4	831	c.519C>T	c.(517-519)TCC>TCT	p.S173S	TRIM39_uc003npz.2_Silent_p.S173S|TRIM39_uc003nqb.2_Silent_p.S173S|TRIM39_uc003nqc.2_Silent_p.S173S|TRIM39_uc010jsa.1_Silent_p.S173S	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	173					apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						GCTGCAAGTCCTCTGAGGAGA	0.517													7	36					0	0	0.003080	0	0
HLA-B	3106	broad.mit.edu	37	6	31323234	31323234	+	Missense_Mutation	SNP	G	A	A	rs41557013		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:31323234G>A	uc003nth.2	-	4	809	c.755C>T	c.(754-756)ACT>ATT	p.T252I	HLA-C_uc003ntb.2_RNA|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_RNA|HLA-B_uc011dnk.1_RNA|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Missense_Mutation_p.T131I|HLA-B_uc003nti.1_RNA|HLA-B_uc010jsn.1_RNA	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	252	Alpha-3.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						CACAAGCTCAGTGTCCTGAGT	0.577									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				13	60					0	0	0.002450	0	0
CYP21A2	1589	broad.mit.edu	37	6	32006290	32006290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:32006290C>T	uc003nze.1	+	1	209	c.91C>T	c.(91-93)CCG>TCG	p.P31S	CYP21A2_uc003nzf.1_Missense_Mutation_p.P31S	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	30			P -> Q (in AH3; does not affect membrane binding; enzyme function abolished).|P -> L (in AH3; non-classic form; 50% activity; 10% of non-classic AH3 Texan patients).		glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						CCTCCACCTCCCGCCTCTTGC	0.532													13	73					0	0	0.003163	0	0
TNXB	7148	broad.mit.edu	37	6	32037995	32037995	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:32037995G>A	uc003nzl.2	-	14	5389	c.5187C>T	c.(5185-5187)ACC>ACT	p.T1729T		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1811	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CATCCAGAGGGGTGACAGTGA	0.632													44	129					0	0	0.003610	0	0
NOTCH4	4855	broad.mit.edu	37	6	32169087	32169087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:32169087C>T	uc003obb.2	-	22	4085	c.3946G>A	c.(3946-3948)GCC>ACC	p.A1316T	NOTCH4_uc003oba.2_5'UTR|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1316	Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AGCACCCGGGCCAGGGCAAAC	0.647													70	241					0	0	0.003610	0	0
NOTCH4	4855	broad.mit.edu	37	6	32187388	32187388	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:32187388G>A	uc003obb.2	-	8	1630	c.1491C>T	c.(1489-1491)TTC>TTT	p.F497F	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.F497F	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	497	EGF-like 12; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AGAGGCAGTGGAAGGTGGCAA	0.602													59	222					0	0	0.003610	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32411082	32411082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:32411082G>A	uc003obh.2	+	3	530	c.449G>A	c.(448-450)GGA>GAA	p.G150E	HLA-DRA_uc003obi.2_Missense_Mutation_p.G125E	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	150	Ig-like C1-type.|Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						CTTCGAAATGGAAAACCTGTC	0.527									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				38	42					0	0	0.004878	0	0
TAP2	6891	broad.mit.edu	37	6	32798510	32798510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:32798510C>T	uc003occ.2	-	7	1377	c.1346G>A	c.(1345-1347)CGA>CAA	p.R449Q	TAP2_uc011dqf.1_Missense_Mutation_p.R449Q|TAP2_uc003ocb.1_Missense_Mutation_p.R449Q|TAP2_uc003ocd.2_Missense_Mutation_p.R449Q	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	449	Cytoplasmic (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						ATTTGGCTGTCGGTCCATGTA	0.542													8	20					0	0	0.008291	0	0
BRD2	6046	broad.mit.edu	37	6	32944031	32944031	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:32944031C>T	uc003ocn.3	+	6	2316	c.615C>T	c.(613-615)CTC>CTT	p.L205L	BRD2_uc003oco.2_RNA|BRD2_uc003ocq.3_Silent_p.L205L|BRD2_uc003ocp.3_Silent_p.L85L|BRD2_uc010juh.2_Silent_p.L205L	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	205					spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						TTCTAGCGCTCCAGGGCAGTG	0.502													12	35					0	0	0.000978	0	0
COL11A2	1302	broad.mit.edu	37	6	33134889	33134889	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:33134889C>T	uc003ocx.1	-	58	4416	c.4188G>A	c.(4186-4188)GGG>GGA	p.G1396G	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Silent_p.G1310G|COL11A2_uc003ocz.1_Silent_p.G1289G	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1396	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GACCAGGCAGCCCTGGGGGTC	0.607													13	39					0	0	0.004990	0	0
COL11A2	1302	broad.mit.edu	37	6	33143458	33143458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:33143458C>T	uc003ocx.1	-	30	2497	c.2269G>A	c.(2269-2271)GGC>AGC	p.G757S	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.G671S|COL11A2_uc003ocz.1_Missense_Mutation_p.G650S	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	757	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCAACTTCGCCCTGTGTGAGA	0.652													11	46					0	0	0.001368	0	0
ZBTB22	9278	broad.mit.edu	37	6	33283477	33283477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:33283477G>A	uc003oeb.2	-	2	1369	c.1217C>T	c.(1216-1218)TCC>TTC	p.S406F	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.S406F	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	406					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGGGGCATAGGAAGAGGGAGT	0.592													35	141					0	0	0.003755	0	0
LEMD2	221496	broad.mit.edu	37	6	33752165	33752165	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:33752165G>A	uc011drm.1	-	3	830	c.817C>T	c.(817-819)CTG>TTG	p.L273L	LEMD2_uc011drl.1_5'UTR|LEMD2_uc003ofe.2_5'UTR	NM_181336	NP_851853	Q8NC56	LEMD2_HUMAN	LEM domain containing 2 isoform 1	273						integral to nuclear inner membrane				central_nervous_system(1)	1						AGTTCATGCAGCAGCTCCAGC	0.572													17	45					0	0	0.004990	0	0
TULP1	7287	broad.mit.edu	37	6	35478719	35478719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:35478719G>A	uc003okv.3	-	5	430	c.418C>T	c.(418-420)CTT>TTT	p.L140F	TULP1_uc003okw.3_Missense_Mutation_p.L87F	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	140					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						GGAGGCAGAAGGATTTTctct	0.398													40	47					0	0	0.005524	0	0
SLC26A8	116369	broad.mit.edu	37	6	35967773	35967773	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:35967773G>A	uc003olm.2	-	4	552	c.441C>T	c.(439-441)TCC>TCT	p.S147S	SLC26A8_uc003oln.2_Silent_p.S147S|SLC26A8_uc003oll.2_Silent_p.S147S	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	147	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						ACTCACCAATGGACATTTGAT	0.398													37	121					0	0	0.005524	0	0
DNAH8	1769	broad.mit.edu	37	6	38805726	38805726	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:38805726C>T	uc003ooe.1	+	31	4323	c.3723C>T	c.(3721-3723)TTC>TTT	p.F1241F		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGGCCAGTTTCGATGATCTGT	0.269													9	20					0	0	0.004482	0	0
DNAH8	1769	broad.mit.edu	37	6	38862567	38862567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:38862567G>A	uc003ooe.1	+	57	8623	c.8023G>A	c.(8023-8025)GCT>ACT	p.A2675T		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GACCATAAAAGCTGAGGAGTG	0.438													9	16					0	0	0.006214	0	0
DNAH8	1769	broad.mit.edu	37	6	38897335	38897335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:38897335C>T	uc003ooe.1	+	73	11116	c.10516C>T	c.(10516-10518)CTT>TTT	p.L3506F	DNAH8_uc003oog.1_5'UTR|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGAGGACAGCCTTTCCTTGGG	0.413													23	74					0	0	0.006320	0	0
DNAH8	1769	broad.mit.edu	37	6	38998124	38998124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:38998124C>T	uc003ooe.1	+	91	14029	c.13429C>T	c.(13429-13431)CAC>TAC	p.H4477Y		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GTCCCCGGATCACTGGATCCT	0.478													23	59					0	0	0.002299	0	0
TRERF1	55809	broad.mit.edu	37	6	42196395	42196395	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:42196395C>T	uc003osd.2	-	18	3854	c.3291G>A	c.(3289-3291)AAG>AAA	p.K1097K	TRERF1_uc011duq.1_Silent_p.K1014K|TRERF1_uc003osb.2_Silent_p.K865K|TRERF1_uc003osc.2_Silent_p.K853K|TRERF1_uc003ose.2_Silent_p.K1117K	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	1097	Interacts with CREBBP.|C2H2-type 3.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GGCTTTTGATCTTGAAGAAGA	0.468													80	288					0	0	0.003610	0	0
TRERF1	55809	broad.mit.edu	37	6	42236163	42236163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:42236163G>A	uc003osd.2	-	5	1729	c.1166C>T	c.(1165-1167)CCC>CTC	p.P389L	TRERF1_uc011duq.1_Missense_Mutation_p.P389L|TRERF1_uc003osb.2_Missense_Mutation_p.P228L|TRERF1_uc003osc.2_Missense_Mutation_p.P228L|TRERF1_uc003ose.2_Missense_Mutation_p.P389L	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	389	Gln-rich.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CTGGTAGAGGGGGTGGCTGTA	0.612													35	118					0	0	0.003755	0	0
ENPP4	22875	broad.mit.edu	37	6	46107806	46107806	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:46107806A>T	uc003oxy.2	+	2	745	c.486A>T	c.(484-486)GAA>GAT	p.E162D		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	162	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CATTTGAGGAAAGACTAAATA	0.413													15	53					0	0	0.003163	0	0
MEP1A	4224	broad.mit.edu	37	6	46787402	46787402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:46787402G>A	uc010jzh.1	+	7	559	c.517G>A	c.(517-519)GAT>AAT	p.D173N	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.D201N|MEP1A_uc011dwi.1_Missense_Mutation_p.D73N	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	173	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GACGGACCGGGATGATTATGT	0.473													43	154					0	0	0.003610	0	0
MEP1A	4224	broad.mit.edu	37	6	46794105	46794105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:46794105C>T	uc010jzh.1	+	9	835	c.793C>T	c.(793-795)CTT>TTT	p.L265F	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.L293F|MEP1A_uc011dwi.1_Missense_Mutation_p.L165F	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	265	Extracellular (Potential).|MAM.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			AACTCACACTCTTTTGGACCA	0.418													13	45					0	0	0.001855	0	0
GPR116	221395	broad.mit.edu	37	6	46847735	46847735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:46847735C>T	uc003oyo.3	-	9	1145	c.856G>A	c.(856-858)GGG>AGG	p.G286R	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Missense_Mutation_p.G286R|GPR116_uc010jzi.1_5'UTR|GPR116_uc003oyr.2_Missense_Mutation_p.G286R	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	286	Ig-like 1.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			ACTGTGTCCCCTTCAAAGATG	0.408													15	41					0	0	0.002450	0	0
CRISP2	7180	broad.mit.edu	37	6	49668450	49668450	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:49668450C>T	uc003ozq.2	-	5	370	c.114G>A	c.(112-114)AGG>AGA	p.R38R	CRISP2_uc003ozl.2_Silent_p.R38R|CRISP2_uc003ozn.2_Silent_p.R38R|CRISP2_uc003ozr.2_Silent_p.R38R|CRISP2_uc003ozo.2_Silent_p.R38R|CRISP2_uc003ozm.2_Silent_p.R38R|CRISP2_uc003ozp.2_Silent_p.R38R	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	38						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TTACAATCTCCCTTTGCACTT	0.363													14	39					0	0	0.002450	0	0
TFAP2B	7021	broad.mit.edu	37	6	50791256	50791256	+	Missense_Mutation	SNP	C	T	T	rs80338910		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:50791256C>T	uc003pag.2	+	2	384	c.218C>T	c.(217-219)CCC>CTC	p.P73L		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	73	Gln/Pro-rich (transactivation domain).		P -> R (in CHAR).		nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					TTCCCACCCCCCTACCAGCCG	0.682													8	28					0	0	0.003080	0	0
TRAM2	9697	broad.mit.edu	37	6	52372354	52372354	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:52372354A>G	uc003paq.2	-	7	772	c.623T>C	c.(622-624)TTA>TCA	p.L208S	EFHC1_uc011dwv.1_Intron|TRAM2_uc003par.1_5'Flank	NM_012288	NP_036420	Q15035	TRAM2_HUMAN	translocation-associated membrane protein 2	208	TLC.|Helical; (Potential).				collagen biosynthetic process|protein transport|transmembrane transport	integral to membrane	protein binding				0	Lung NSC(77;0.109)					CACTCACTTTAAGAGGTATGC	0.398													25	29					0	0	0.004656	0	0
GSTA1	2938	broad.mit.edu	37	6	52657738	52657738	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:52657738G>C	uc003paz.2	-	6	574	c.462C>G	c.(460-462)AGC>AGG	p.S154R		NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	154	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	TGTCAGCCCGGCTCAGCTTGT	0.517													37	93					0	0	0.005524	0	0
C6orf142	90523	broad.mit.edu	37	6	54025203	54025203	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:54025203G>A	uc003pcg.3	+	5	836	c.723G>A	c.(721-723)AAG>AAA	p.K241K	C6orf142_uc003pcf.2_Silent_p.K765K|C6orf142_uc003pch.3_Intron|C6orf142_uc011dxa.1_Silent_p.K776K	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	241						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					GTGTCTCCAAGGACAACACAT	0.403													5	11					0	0	0.000602	0	0
FAM83B	222584	broad.mit.edu	37	6	54805265	54805265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:54805265C>T	uc003pck.2	+	5	1612	c.1496C>T	c.(1495-1497)TCC>TTC	p.S499F		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	499										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AGAATTGAATCCTACTTAAAT	0.403													13	44					0	0	0.001855	0	0
FAM83B	222584	broad.mit.edu	37	6	54805518	54805518	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:54805518C>T	uc003pck.2	+	5	1865	c.1749C>T	c.(1747-1749)ACC>ACT	p.T583T		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	583										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TCCCAGACACCCCTACGAATG	0.468													11	33					0	0	0.000978	0	0
FAM83B	222584	broad.mit.edu	37	6	54806047	54806047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:54806047G>A	uc003pck.2	+	5	2394	c.2278G>A	c.(2278-2280)GAA>AAA	p.E760K		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	760										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTCAAAGAAGGAAGTTAAGGG	0.368													11	49					0	0	0.008291	0	0
GFRAL	389400	broad.mit.edu	37	6	55214904	55214904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:55214904G>A	uc003pcm.1	+	4	417	c.331G>A	c.(331-333)GAT>AAT	p.D111N		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	111	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CGTGAAAGAGGATAAATTCAA	0.294													7	23					0	0	0.004482	0	0
ZNF451	26036	broad.mit.edu	37	6	57017092	57017092	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:57017092C>T	uc003pdm.1	+	12	3050	c.2826C>T	c.(2824-2826)TTC>TTT	p.F942F	ZNF451_uc003pdl.2_Silent_p.F942F|ZNF451_uc003pdn.1_Silent_p.F894F|uc003pdq.1_Intron	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	942					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			GATGCTTCTTCCTTCATCCTC	0.368													7	51					0	0	0.003080	0	0
COL9A1	1297	broad.mit.edu	37	6	70963122	70963122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:70963122C>T	uc003pfg.3	-	26	1889	c.1730G>A	c.(1729-1731)GGA>GAA	p.G577E	COL9A1_uc003pfe.3_Missense_Mutation_p.G150E|COL9A1_uc003pff.3_Missense_Mutation_p.G334E	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	577	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						ACCAGGAATTCCAGGTACACC	0.348													12	35					0	0	0.002450	0	0
RIMS1	22999	broad.mit.edu	37	6	72967938	72967938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:72967938G>A	uc003pga.2	+	17	2958	c.2881G>A	c.(2881-2883)GAT>AAT	p.D961N	RIMS1_uc011dyb.1_Missense_Mutation_p.D586N|RIMS1_uc003pgc.2_Missense_Mutation_p.D587N|RIMS1_uc010kaq.2_Missense_Mutation_p.D434N|RIMS1_uc011dyc.1_Missense_Mutation_p.D435N|RIMS1_uc010kar.2_Missense_Mutation_p.D354N|RIMS1_uc011dyd.1_Missense_Mutation_p.D420N|RIMS1_uc003pgf.2_Missense_Mutation_p.D177N|RIMS1_uc003pgg.2_Missense_Mutation_p.D178N|RIMS1_uc003pgi.2_Missense_Mutation_p.D177N|RIMS1_uc003pgh.2_Missense_Mutation_p.D177N|RIMS1_uc003pgd.2_Missense_Mutation_p.D178N|RIMS1_uc003pge.2_Missense_Mutation_p.D178N|RIMS1_uc011dye.1_5'UTR|RIMS1_uc011dyf.1_5'Flank|RIMS1_uc003pgb.3_Missense_Mutation_p.D587N|RIMS1_uc010kas.1_Missense_Mutation_p.D420N	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	961					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TCGCGGCAATGATCAGGGAAA	0.438													7	18					0	0	0.003080	0	0
KHDC1	80759	broad.mit.edu	37	6	73951815	73951815	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:73951815A>G	uc003pgo.2	-	4	978	c.477T>C	c.(475-477)TGT>TGC	p.C159C	KHDC1_uc011dyl.1_RNA|KHDC1_uc003pgn.3_Silent_p.C86C	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	159						integral to membrane	RNA binding			skin(1)	1						TCCCCACACAACAAAACATGT	0.522													5	35					0	0	0.000602	0	0
DDX43	55510	broad.mit.edu	37	6	74110016	74110016	+	Silent	SNP	G	A	A	rs140241372		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:74110016G>A	uc003pgw.2	+	3	710	c.366G>A	c.(364-366)ACG>ACA	p.T122T	DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	122	KH.					intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						CAATGCAAACGAAAGCAAAAG	0.353													18	44					0	0	0.004990	0	0
SLC17A5	26503	broad.mit.edu	37	6	74325154	74325154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:74325154G>A	uc003phn.3	-	8	1123	c.995C>T	c.(994-996)TCA>TTA	p.S332L	SLC17A5_uc010kax.2_5'UTR|SLC17A5_uc010kay.2_RNA|SLC17A5_uc011dyo.1_Missense_Mutation_p.S201L	NM_012434	NP_036566	Q9NRA2	S17A5_HUMAN	sialin	332	Helical; (Potential).				anion transport	integral to plasma membrane|lysosomal membrane|membrane fraction	sialic acid:hydrogen symporter activity			skin(5)|central_nervous_system(1)	6						ATAAGGCAATGAAGATAAAAA	0.368													8	24					0	0	0.004482	0	0
CD109	135228	broad.mit.edu	37	6	74512972	74512972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:74512972G>A	uc003php.2	+	24	3333	c.2908G>A	c.(2908-2910)GAA>AAA	p.E970K	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.E970K|CD109_uc010kba.2_Missense_Mutation_p.E893K	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	970						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						CTATCAGAGGGAAGATGGCTC	0.393													11	56					0	0	0.002450	0	0
CD109	135228	broad.mit.edu	37	6	74528148	74528148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:74528148G>A	uc003php.2	+	31	4374	c.3949G>A	c.(3949-3951)GAA>AAA	p.E1317K	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.E1300K|CD109_uc010kba.2_Missense_Mutation_p.E1240K	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1317						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						GGCTCTTATGGAAGTTAACCT	0.423													7	44					0	0	0.001984	0	0
FILIP1	27145	broad.mit.edu	37	6	76024867	76024867	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:76024867C>T	uc003pia.2	-	5	1054	c.681G>A	c.(679-681)AAG>AAA	p.K227K	FILIP1_uc003phy.1_Silent_p.K227K|FILIP1_uc003phz.2_Silent_p.K128K|FILIP1_uc010kbe.2_Silent_p.K230K|FILIP1_uc003pib.1_5'UTR	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	227	Potential.									skin(3)|ovary(1)	4						TAGCATTTTCCTTTTCTTTGC	0.343													13	51					0	0	0.001368	0	0
DOPEY1	23033	broad.mit.edu	37	6	83834472	83834472	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:83834472C>T	uc003pjs.1	+	13	1649	c.1389C>T	c.(1387-1389)GAC>GAT	p.D463D	DOPEY1_uc011dyy.1_Silent_p.D454D|DOPEY1_uc010kbl.1_Silent_p.D454D	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	463					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		ATAGTAATGACTCATCTGAAT	0.368													23	82					0	0	0.004656	0	0
ME1	4199	broad.mit.edu	37	6	84117513	84117513	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:84117513G>A	uc003pjy.2	-	2	292	c.186C>T	c.(184-186)TTC>TTT	p.F62F	ME1_uc011dzb.1_Intron|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	62					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TCAGATGCTCGAAATTTTTTA	0.383													23	50					0	0	0.002780	0	0
PRSS35	167681	broad.mit.edu	37	6	84233438	84233438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:84233438G>A	uc003pjz.2	+	2	441	c.278G>A	c.(277-279)CGA>CAA	p.R93Q	PRSS35_uc010kbm.2_Missense_Mutation_p.R93Q	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	93					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		AATGGCACCCGAACCTTAACC	0.453													8	37					0	0	0.004482	0	0
SNAP91	9892	broad.mit.edu	37	6	84303377	84303377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:84303377G>A	uc011dze.1	-	17	1833	c.1516C>T	c.(1516-1518)CCT>TCT	p.P506S	SNAP91_uc011dzd.1_Missense_Mutation_p.P9S|SNAP91_uc003pkb.2_Missense_Mutation_p.P469S|SNAP91_uc003pkc.2_Missense_Mutation_p.P504S|SNAP91_uc003pkd.2_Intron|SNAP91_uc003pka.2_Missense_Mutation_p.P504S	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	506	Ala-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GTAACTACAGGAACACTGGTC	0.398													6	29					0	0	0.001168	0	0
TBX18	9096	broad.mit.edu	37	6	85466570	85466570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:85466570G>A	uc003pkl.1	-	4	617	c.617C>T	c.(616-618)TCG>TTG	p.S206L	TBX18_uc010kbq.1_Missense_Mutation_p.S48L	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	206	T-box.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		CATCCATTTCGAACTGTGGTA	0.488													9	35					0	0	0.006214	0	0
FUT9	10690	broad.mit.edu	37	6	96651677	96651677	+	Missense_Mutation	SNP	C	T	T	rs146949446		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:96651677C>T	uc003pop.3	+	3	987	c.646C>T	c.(646-648)CAT>TAT	p.H216Y		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	216	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CATTGAAATCCATACCTACGG	0.373													10	27					0	0	0.006214	0	0
MCHR2	84539	broad.mit.edu	37	6	100369011	100369011	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:100369011C>T	uc003pqh.1	-	6	1143	c.828G>A	c.(826-828)CAG>CAA	p.Q276Q	MCHR2_uc003pqi.1_Silent_p.Q276Q	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	276	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		GCTGTTCCATCTGTAAGTTCA	0.473													17	46					0	0	0.004990	0	0
ASCC3	10973	broad.mit.edu	37	6	101173462	101173462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:101173462C>T	uc003pqk.2	-	11	2184	c.1855G>A	c.(1855-1857)GAT>AAT	p.D619N	ASCC3_uc011eai.1_Missense_Mutation_p.D521N|ASCC3_uc003pql.2_Missense_Mutation_p.D619N	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	619	Helicase ATP-binding 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		GGTCCTCTATCTTCATGCAGC	0.378													8	46					0	0	0.004482	0	0
PRDM1	639	broad.mit.edu	37	6	106555155	106555155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:106555155G>A	uc003prd.2	+	7	2506	c.2272G>A	c.(2272-2274)GAA>AAA	p.E758K	PRDM1_uc003pre.2_Missense_Mutation_p.E624K	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	758					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		AGTGGAGAAGGAAATTCTGGC	0.483			D|N|Mis|F|S		DLBCL								25	95					0	0	0.003330	0	0
MICAL1	64780	broad.mit.edu	37	6	109773720	109773720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:109773720G>A	uc003ptj.2	-	4	924	c.670C>T	c.(670-672)CCT>TCT	p.P224S	MICAL1_uc003ptk.2_Missense_Mutation_p.P224S|MICAL1_uc010kdr.2_Missense_Mutation_p.P224S|MICAL1_uc011eaq.1_Missense_Mutation_p.P243S	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	224					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		TCACCTTCAGGGACGAATTTA	0.552													8	31					0	0	0.004482	0	0
CDC40	51362	broad.mit.edu	37	6	110514406	110514406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:110514406C>T	uc003pua.2	+	2	235	c.211C>T	c.(211-213)CAC>TAC	p.H71Y		NM_015891	NP_056975	O60508	PRP17_HUMAN	cell division cycle 40 homolog	71					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm					0		all_cancers(87;6.23e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		Epithelial(106;0.0221)|all cancers(137;0.0314)|OV - Ovarian serous cystadenocarcinoma(136;0.034)		GACTGGAGTTCACCTTGACCC	0.348													10	37					0	0	0.008291	0	0
CDC40	51362	broad.mit.edu	37	6	110551240	110551240	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:110551240A>T	uc003pua.2	+	15	1670	c.1646A>T	c.(1645-1647)CAT>CTT	p.H549L		NM_015891	NP_056975	O60508	PRP17_HUMAN	cell division cycle 40 homolog	549	WD 7.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm					0		all_cancers(87;6.23e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		Epithelial(106;0.0221)|all cancers(137;0.0314)|OV - Ovarian serous cystadenocarcinoma(136;0.034)		TTTAAAGCTCATGATAAAGTG	0.373													12	36					0	0	0.001368	0	0
SLC22A16	85413	broad.mit.edu	37	6	110763835	110763835	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:110763835C>T	uc003puf.2	-	4	862	c.795G>A	c.(793-795)AGG>AGA	p.R265R	SLC22A16_uc003pue.2_Silent_p.R246R	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	265					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		GCCACCAGGTCCTGACCAAGT	0.507													20	57					0	0	0.002299	0	0
LAMA4	3910	broad.mit.edu	37	6	112454586	112454586	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:112454586G>A	uc003pvu.2	-	27	3970	c.3661C>T	c.(3661-3663)CTG>TTG	p.L1221L	LAMA4_uc003pvv.2_Silent_p.L1214L|LAMA4_uc003pvt.2_Silent_p.L1214L	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	1221	Laminin G-like 2.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		CCAACTCCCAGGGTTTCTGTC	0.433													11	68					0	0	0.000978	0	0
FRK	2444	broad.mit.edu	37	6	116263665	116263665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:116263665C>T	uc003pwi.1	-	8	1877	c.1430G>A	c.(1429-1431)CGA>CAA	p.R477Q		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	477	Protein kinase.				negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		AAATGTAGGTCGTTCCTTAGG	0.408													14	60					0	0	0.003163	0	0
ROS1	6098	broad.mit.edu	37	6	117674322	117674322	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:117674322G>A	uc003pxp.1	-	26	4351	c.4152C>T	c.(4150-4152)ACC>ACT	p.T1384T	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1384	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		AGCTAACAAGGGTTTTTCCTG	0.308			T	GOPC|ROS1	glioblastoma|NSCLC								9	30					0	0	0.004482	0	0
C6orf170	221322	broad.mit.edu	37	6	121615761	121615761	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:121615761T>C	uc003pyo.1	-	11	1254	c.1186A>G	c.(1186-1188)AAG>GAG	p.K396E	C6orf170_uc003pyq.1_RNA|C6orf170_uc003pyp.1_5'Flank	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	396					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		TTCCTAGTCTTACACATTTCA	0.318													31	92					0	0	0.003755	0	0
CLVS2	134829	broad.mit.edu	37	6	123369783	123369783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:123369783G>A	uc003pzi.1	+	4	1450	c.581G>A	c.(580-582)CGA>CAA	p.R194Q		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	194	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TTCCCAGCGCGATTTGGAGGA	0.388													34	121					0	0	0.006230	0	0
NKAIN2	154215	broad.mit.edu	37	6	125112496	125112496	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:125112496C>T	uc003pzo.2	+	5	763	c.486C>T	c.(484-486)TTC>TTT	p.F162F	NKAIN2_uc003pzp.2_Silent_p.F161F|NKAIN2_uc010keq.2_Silent_p.F95F|NKAIN2_uc010ker.2_Silent_p.F72F	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	162	Helical; (Potential).					integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		TGGCAGGTTTCATCTACGCCT	0.403													10	25					0	0	0.008291	0	0
C6orf174	387104	broad.mit.edu	37	6	127796711	127796711	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:127796711C>T	uc003qbd.2	-	6	3325	c.2460G>A	c.(2458-2460)TCG>TCA	p.S820S	C6orf174_uc003qbc.2_5'UTR	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	820	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GCTCGGCCTCCGAGCGGATGT	0.672													33	107					0	0	0.003755	0	0
C6orf174	387104	broad.mit.edu	37	6	127796913	127796913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:127796913G>A	uc003qbd.2	-	6	3123	c.2258C>T	c.(2257-2259)GCC>GTC	p.A753V	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	753						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GTCGCTCTCGGCGTCGCTGTC	0.692													31	80					0	0	0.002836	0	0
C6orf174	387104	broad.mit.edu	37	6	127796945	127796945	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:127796945C>T	uc003qbd.2	-	6	3091	c.2226G>A	c.(2224-2226)CTG>CTA	p.L742L	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	742						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CGCGGATGCCCAGGTGCGAGG	0.677													36	108					0	0	0.009718	0	0
C6orf58	352999	broad.mit.edu	37	6	127912742	127912742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:127912742C>T	uc003qbh.2	+	6	980	c.968C>T	c.(967-969)TCT>TTT	p.S323F		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	323						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		GAATCTAGCTCTAGAAGTTAT	0.269													12	21					0	0	0.001368	0	0
PTPRK	5796	broad.mit.edu	37	6	128326357	128326357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:128326357C>T	uc003qbk.2	-	15	2730	c.2363G>A	c.(2362-2364)GGG>GAG	p.G788E	PTPRK_uc003qbj.2_Missense_Mutation_p.G789E|PTPRK_uc010kfc.2_Missense_Mutation_p.G789E|PTPRK_uc011ebu.1_Missense_Mutation_p.G789E|PTPRK_uc003qbl.1_Missense_Mutation_p.G683E|PTPRK_uc011ebv.1_Missense_Mutation_p.G799E|PTPRK_uc010kfd.1_Missense_Mutation_p.G2E	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	788	Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CCGGGTATTCCCCATGGCATC	0.463													14	28					0	0	0.004007	0	0
LAMA2	3908	broad.mit.edu	37	6	129833584	129833584	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:129833584G>A	uc003qbn.2	+	62	9039	c.8934G>A	c.(8932-8934)CTG>CTA	p.L2978L	LAMA2_uc003qbo.2_Silent_p.L2974L|uc003qbq.2_Intron	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2978	Laminin G-like 5.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GAGTTCTTCTGGGGATCAGTA	0.358													25	67					0	0	0.003954	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130370521	130370521	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:130370521T>A	uc003qbt.2	+	4	367	c.197T>A	c.(196-198)GTA>GAA	p.V66E	L3MBTL3_uc003qbu.2_Missense_Mutation_p.V66E	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	66					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		ACTTGGATGGTACCAACTGCT	0.363													5	17					0	0	0.001168	0	0
SAMD3	154075	broad.mit.edu	37	6	130536361	130536361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:130536361C>T	uc003qbv.2	-	4	384	c.58G>A	c.(58-60)GAG>AAG	p.E20K	SAMD3_uc003qbx.2_Missense_Mutation_p.E20K|SAMD3_uc003qbw.2_Missense_Mutation_p.E20K|SAMD3_uc010kfg.1_Missense_Mutation_p.E20K|SAMD3_uc003qby.2_Missense_Mutation_p.E20K|SAMD3_uc003qbz.1_5'UTR	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	20	SAM.									ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TGAACTAGCTCTCCTAAATTT	0.393													7	25					0	0	0.004482	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762527	130762527	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:130762527G>A	uc003qca.2	+	3	1831	c.960G>A	c.(958-960)AGG>AGA	p.R320R	TMEM200A_uc010kfh.2_Silent_p.R320R|TMEM200A_uc010kfi.2_Silent_p.R320R|TMEM200A_uc003qcb.2_Silent_p.R320R	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	320	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GTAGGTCAAGGAATTTGTCAA	0.428													11	46					0	0	0.008291	0	0
ENPP1	5167	broad.mit.edu	37	6	132189168	132189168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:132189168C>T	uc011ecf.1	+	12	1195	c.1175C>T	c.(1174-1176)GCC>GTC	p.A392V	ENPP1_uc003qcy.2_Missense_Mutation_p.A22V	NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	392	Phosphodiesterase.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	GTCATCAAAGCCTTGCAGAGG	0.393													22	60					0	0	0.005443	0	0
TAAR6	319100	broad.mit.edu	37	6	132891845	132891845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:132891845G>A	uc011eck.1	+	1	385	c.385G>A	c.(385-387)GAC>AAC	p.D129N		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	129	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		CATCTCCATCGACAGGTACAT	0.483													57	202					0	0	0.003610	0	0
VNN2	8875	broad.mit.edu	37	6	133070846	133070846	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:133070846A>G	uc003qdt.2	-	6	1370	c.1359T>C	c.(1357-1359)CCT>CCC	p.P453P	VNN2_uc003qds.2_Silent_p.P162P|VNN2_uc010kgb.2_Silent_p.P232P|VNN2_uc003qdv.2_Silent_p.P400P	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	453					cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		CAAATTTTCCAGGTGACAGAT	0.343													4	13					0	0	0.009096	0	0
EYA4	2070	broad.mit.edu	37	6	133789771	133789771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:133789771G>A	uc003qec.3	+	11	1330	c.872G>A	c.(871-873)GGA>GAA	p.G291E	EYA4_uc011ecq.1_Missense_Mutation_p.G237E|EYA4_uc011ecr.1_Missense_Mutation_p.G237E|EYA4_uc003qed.3_Missense_Mutation_p.G291E|EYA4_uc003qee.3_Missense_Mutation_p.G268E|EYA4_uc011ecs.1_Missense_Mutation_p.G291E|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	291					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TCAACGTATGGAGCGTATATG	0.428													21	68					0	0	0.010504	0	0
EYA4	2070	broad.mit.edu	37	6	133789851	133789851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:133789851G>A	uc003qec.3	+	11	1410	c.952G>A	c.(952-954)GGA>AGA	p.G318R	EYA4_uc011ecq.1_Missense_Mutation_p.G264R|EYA4_uc011ecr.1_Missense_Mutation_p.G264R|EYA4_uc003qed.3_Missense_Mutation_p.G318R|EYA4_uc003qee.3_Missense_Mutation_p.G295R|EYA4_uc011ecs.1_Missense_Mutation_p.G318R|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	318					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		ATCTCTCCCAGGACTGACTAA	0.408													28	78					0	0	0.007291	0	0
HBS1L	10767	broad.mit.edu	37	6	135290425	135290425	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:135290425T>A	uc003qez.2	-	16	2056	c.1849A>T	c.(1849-1851)ATT>TTT	p.I617F	HBS1L_uc003qey.2_Missense_Mutation_p.I453F|HBS1L_uc011ecy.1_Missense_Mutation_p.I341F|HBS1L_uc011ecz.1_Missense_Mutation_p.I453F|HBS1L_uc011eda.1_Missense_Mutation_p.I575F	NM_006620	NP_006611	Q9Y450	HBS1L_HUMAN	Hsp70 subfamily B suppressor 1-like protein	617					signal transduction		GTP binding|GTPase activity|translation elongation factor activity			skin(2)	2	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0046)|GBM - Glioblastoma multiforme(68;0.00702)		AAGACACTAATCAATCGTTTA	0.338													7	30					0	0	0.008291	0	0
MAP3K5	4217	broad.mit.edu	37	6	136888793	136888793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:136888793C>T	uc003qhc.2	-	26	4098	c.3737G>A	c.(3736-3738)GGA>GAA	p.G1246E	MAP3K5_uc011edj.1_Missense_Mutation_p.G493E|MAP3K5_uc011edk.1_Missense_Mutation_p.G1092E	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1246					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TTTCATCCTTCCAAGCTGTAC	0.438													5	17					0	0	0.001168	0	0
KIAA1244	57221	broad.mit.edu	37	6	138531086	138531086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:138531086G>A	uc003qhu.2	+	4	259	c.259G>A	c.(259-261)GAT>AAT	p.D87N		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	87					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CATGGAAACAGATTCTGATGA	0.488													17	77					0	0	0.007413	0	0
KIAA1244	57221	broad.mit.edu	37	6	138655883	138655883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:138655883G>A	uc003qhu.2	+	33	5900	c.5900G>A	c.(5899-5901)AGC>AAC	p.S1967N		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1967					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		GATGACAGAAGCCAGTCCCGG	0.642													4	11					0	0	0.009096	0	0
SYNE1	23345	broad.mit.edu	37	6	152542123	152542123	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:152542123G>A	uc010kiw.2	-	119	22317	c.21715C>T	c.(21715-21717)CAG>TAG	p.Q7239*	SYNE1_uc010kiv.2_Nonsense_Mutation_p.Q1763*|SYNE1_uc003qos.3_Nonsense_Mutation_p.Q1763*|SYNE1_uc003qot.3_Nonsense_Mutation_p.Q7168*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Q7239*|SYNE1_uc003qor.3_Nonsense_Mutation_p.Q139*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7239	HAT 10.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGCCAAAGCTGAAGTAGGGCC	0.468										HNSCC(10;0.0054)			16	63					0	0	0.004007	0	0
SYNE1	23345	broad.mit.edu	37	6	152861132	152861132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:152861132C>T	uc010kiw.2	-	4	694	c.92G>A	c.(91-93)CGA>CAA	p.R31Q	SYNE1_uc003qot.3_Missense_Mutation_p.R31Q|SYNE1_uc003qou.3_Missense_Mutation_p.R31Q|SYNE1_uc010kjb.1_Missense_Mutation_p.R31Q|SYNE1_uc003qpa.1_Missense_Mutation_p.R31Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	31	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGTGAAAGTTCGTTTTTGTAC	0.338										HNSCC(10;0.0054)			28	74					0	0	0.008361	0	0
RBM16	22828	broad.mit.edu	37	6	155141449	155141449	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:155141449C>T	uc003qqa.2	+	16	2006	c.1774C>T	c.(1774-1776)CAG>TAG	p.Q592*	RBM16_uc011efj.1_Nonsense_Mutation_p.Q658*|RBM16_uc011efk.1_Nonsense_Mutation_p.Q637*|RBM16_uc003qpz.2_Nonsense_Mutation_p.Q592*|RBM16_uc010kji.2_Nonsense_Mutation_p.Q613*	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	592					mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		CATGATTGATCAGGAGACTGT	0.368													12	31					0	0	0.001368	0	0
NOX3	50508	broad.mit.edu	37	6	155732367	155732367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:155732367G>A	uc003qqm.2	-	11	1539	c.1436C>T	c.(1435-1437)ACC>ATC	p.T479I		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	479	Cytoplasmic (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		ATCCCAGCCGGTAAGAAATAT	0.398													8	25					0	0	0.003080	0	0
TAGAP	117289	broad.mit.edu	37	6	159462504	159462504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:159462504C>T	uc003qrz.2	-	6	691	c.359G>A	c.(358-360)GGG>GAG	p.G120E	TAGAP_uc011eft.1_Missense_Mutation_p.G57E|TAGAP_uc003qsa.2_5'UTR|TAGAP_uc003qsb.2_Missense_Mutation_p.G120E|uc003qsc.2_5'Flank	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	120	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		CCTGAATATCCCTTCCGTTGA	0.502													8	35					0	0	0.003080	0	0
PNLDC1	154197	broad.mit.edu	37	6	160239999	160239999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:160239999C>T	uc003qsx.1	+	17	1417	c.1246C>T	c.(1246-1248)CCC>TCC	p.P416S	PNLDC1_uc003qsy.1_Missense_Mutation_p.P427S	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	416	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		TCCAGATTATCCCAGTATCCG	0.443													19	78					0	0	0.010504	0	0
LPA	4018	broad.mit.edu	37	6	161006198	161006198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:161006198C>T	uc003qtl.2	-	27	4289	c.4169G>A	c.(4168-4170)CGA>CAA	p.R1390Q		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3898	Kringle 35.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TCCATCACCTCGGTAGCAGTC	0.453													39	96					0	0	0.008740	0	0
PLG	5340	broad.mit.edu	37	6	161123340	161123340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:161123340G>A	uc003qtm.3	+	1	67	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	2					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TCCCAAAATGGAACATAAGGA	0.368													14	64					0	0	0.007413	0	0
MAP3K4	4216	broad.mit.edu	37	6	161510469	161510469	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:161510469A>G	uc003qtn.2	+	11	3081	c.2939A>G	c.(2938-2940)CAG>CGG	p.Q980R	MAP3K4_uc010kkc.1_Missense_Mutation_p.Q980R|MAP3K4_uc003qto.2_Missense_Mutation_p.Q980R|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.Q433R|MAP3K4_uc003qtp.2_5'Flank	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	980					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		ACATCCAGTCAGCCGGTCATC	0.463													25	106					0	0	0.008361	0	0
TCP10L2	401285	broad.mit.edu	37	6	167585642	167585642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:167585642G>A	uc010kkp.2	+	2	141	c.10G>A	c.(10-12)GGT>AGT	p.G4S		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	4											0						GATGCTGGAGGGTCAGCTCGA	0.657													4	9					0	0	0.009096	0	0
TBP	6908	broad.mit.edu	37	6	170873644	170873644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:170873644C>T	uc003qxt.2	+	4	741	c.509C>T	c.(508-510)TCC>TTC	p.S170F	TBP_uc003qxu.2_Missense_Mutation_p.S170F|TBP_uc011ehf.1_Missense_Mutation_p.S150F	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	170	1.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		AATATTGTATCCACAGTGAAT	0.333													4	24					0	0	0.009096	0	0
C1GALT1	56913	broad.mit.edu	37	7	7283232	7283232	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:7283232C>T	uc010ktn.2	+	4	1189	c.966C>T	c.(964-966)CTC>CTT	p.L322L	C1GALT1_uc003sra.2_Silent_p.L322L|uc003srb.1_5'Flank	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	322	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		TAGAATACCTCGTTTATCATC	0.353													27	63					0	0	0.005443	0	0
NXPH1	30010	broad.mit.edu	37	7	8791333	8791333	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:8791333A>T	uc003srv.2	+	3	1661	c.750A>T	c.(748-750)AAA>AAT	p.K250N	NXPH1_uc011jxh.1_Missense_Mutation_p.K133N	NM_152745	NP_689958	P58417	NXPH1_HUMAN	neurexophilin 1 precursor	250	V (Cys-rich).					extracellular region				ovary(1)|central_nervous_system(1)	2		Ovarian(82;0.0628)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)		CAGATTATAAACTGGTACAGA	0.458													10	15					0	0	0.008291	0	0
HDAC9	9734	broad.mit.edu	37	7	18975558	18975558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:18975558G>A	uc003suh.2	+	22	2962	c.2921G>A	c.(2920-2922)GGA>GAA	p.G974E	HDAC9_uc003sue.2_Missense_Mutation_p.G974E|HDAC9_uc003sui.2_Missense_Mutation_p.G977E|HDAC9_uc003suj.2_Missense_Mutation_p.G933E|HDAC9_uc003suk.2_Missense_Mutation_p.G222E	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	974	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GCCCTTCTAGGAAATGAGGTA	0.408													21	63					0	0	0.010504	0	0
MACC1	346389	broad.mit.edu	37	7	20199749	20199749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:20199749C>T	uc003sus.3	-	5	544	c.235G>A	c.(235-237)GAT>AAT	p.D79N	MACC1_uc010kug.2_Missense_Mutation_p.D79N	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	79					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						GTTATGTCATCCAAAAATGGG	0.358													13	23					0	0	0.002450	0	0
ITGB8	3696	broad.mit.edu	37	7	20431099	20431099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:20431099G>A	uc003suu.2	+	7	1739	c.1034G>A	c.(1033-1035)GGA>GAA	p.G345E	ITGB8_uc011jyh.1_Missense_Mutation_p.G210E|ITGB8_uc003sut.2_Missense_Mutation_p.G345E	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	345	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						GCAGTTCAAGGAAAACAATTT	0.284													8	20					0	0	0.004482	0	0
ABCB5	340273	broad.mit.edu	37	7	20778753	20778753	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:20778753G>A	uc003suw.3	+	15	2226	c.1680G>A	c.(1678-1680)GGG>GGA	p.G560G	ABCB5_uc010kuh.2_Silent_p.G1005G	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	560	Cytoplasmic (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GTCAAGAAGGGAAAAAGCCAG	0.308													5	6					0	0	0.000602	0	0
CDCA7L	55536	broad.mit.edu	37	7	21942684	21942684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:21942684G>A	uc010kuk.2	-	9	1366	c.1246C>T	c.(1246-1248)CGG>TGG	p.R416W	CDCA7L_uc003sve.3_Missense_Mutation_p.R382W|CDCA7L_uc010kul.2_Missense_Mutation_p.R370W|CDCA7L_uc003svf.3_Missense_Mutation_p.R415W	NM_018719	NP_061189	Q96GN5	CDA7L_HUMAN	cell division cycle associated 7-like isoform 1	416					positive regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus					0						TCACGCTTCCGACAGTAGCTG	0.493													9	18					0	0	0.004482	0	0
NOD1	10392	broad.mit.edu	37	7	30494798	30494798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:30494798G>A	uc003tav.2	-	5	854	c.331C>T	c.(331-333)CCT>TCT	p.P111S	NOD1_uc010kvs.2_Missense_Mutation_p.P111S	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	111					activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						AGCAGGGAAGGGGAGAAGCCG	0.617													13	39					0	0	0.002450	0	0
INMT	11185	broad.mit.edu	37	7	30791851	30791851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:30791851G>A	uc003tbs.1	+	1	101	c.85G>A	c.(85-87)GGC>AGC	p.G29S	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_Intron|INMT_uc010kwd.1_Missense_Mutation_p.G29S	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	29						cytoplasm	amine N-methyltransferase activity				0						CAGCTTCGATGGCAGCCCCTC	0.567													27	65					0	0	0.004656	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378226	31378226	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:31378226G>A	uc003tch.2	-	2	1010	c.657C>T	c.(655-657)CCC>CCT	p.P219P		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	219					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						CATGCCCTGGGGGAGTGGTGA	0.527													13	63					0	0	0.002450	0	0
KBTBD2	25948	broad.mit.edu	37	7	32909132	32909132	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:32909132T>A	uc003tdb.2	-	4	2356	c.1697A>T	c.(1696-1698)CAT>CTT	p.H566L	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	566	Kelch 5.										0			GBM - Glioblastoma multiforme(11;0.0499)			TTCAGATATATGCTGCCGCAG	0.478													26	56					0	0	0.003954	0	0
NPSR1	387129	broad.mit.edu	37	7	34889193	34889193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:34889193G>A	uc003teg.1	+	9	1170	c.1042G>A	c.(1042-1044)GAT>AAT	p.D348N	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.G381E|NPSR1_uc010kwt.1_Missense_Mutation_p.D195N|NPSR1_uc010kwu.1_Missense_Mutation_p.D138N|NPSR1_uc010kwv.1_Missense_Mutation_p.D282N|NPSR1_uc003tei.1_Intron|NPSR1_uc010kww.1_Intron|NPSR1_uc011kar.1_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	348	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	AAGATCACAGGATTCCAGAAT	0.448													12	55					0	0	0.004990	0	0
BLVRA	644	broad.mit.edu	37	7	43832342	43832342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:43832342C>T	uc003tir.2	+	5	366	c.283C>T	c.(283-285)CTT>TTT	p.L95F	BLVRA_uc010kxv.2_Missense_Mutation_p.L95F	NM_000712	NP_000703	P53004	BIEA_HUMAN	biliverdin reductase A precursor	95					heme catabolic process	cytosol	biliverdin reductase activity|zinc ion binding			ovary(1)	1					NADH(DB00157)	CAAGCACGTCCTTGTGGAATA	0.468													8	24					0	0	0.006214	0	0
NPC1L1	29881	broad.mit.edu	37	7	44560379	44560379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:44560379C>T	uc003tlb.2	-	14	3177	c.3121G>A	c.(3121-3123)GAT>AAT	p.D1041N	NPC1L1_uc003tlc.2_Missense_Mutation_p.D1041N|NPC1L1_uc011kbw.1_Missense_Mutation_p.D995N|NPC1L1_uc003tla.2_Missense_Mutation_p.D44N	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1041	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	ACCTGGCCATCTGAAGTCAAG	0.567													20	39					0	0	0.010504	0	0
ADCY1	107	broad.mit.edu	37	7	45726197	45726197	+	Silent	SNP	C	T	T	rs148089389	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:45726197C>T	uc003tne.3	+	14	2397	c.2379C>T	c.(2377-2379)CTC>CTT	p.L793L		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	793	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CCATCCTGCTCTTCTCCTGTG	0.627													16	39					0	0	0.006122	0	0
ZPBP	11055	broad.mit.edu	37	7	49977183	49977183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:49977183C>T	uc003tou.2	-	8	1067	c.997G>A	c.(997-999)GGA>AGA	p.G333R	ZPBP_uc011kci.1_Missense_Mutation_p.G259R|ZPBP_uc010kyw.2_Missense_Mutation_p.G332R	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	333					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					CAATGAATTCCATCACGGGGG	0.328													17	49					0	0	0.008871	0	0
POM121L12	285877	broad.mit.edu	37	7	53103667	53103667	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:53103667C>T	uc003tpz.2	+	1	319	c.303C>T	c.(301-303)GCC>GCT	p.A101A		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	101											0						GGCGCCCTGCCCTTCCCGGGG	0.726													8	22					0	0	0.003080	0	0
EGFR	1956	broad.mit.edu	37	7	55233114	55233114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:55233114C>T	uc003tqk.2	+	15	2110	c.1864C>T	c.(1864-1866)CCA>TCA	p.P622S	EGFR_uc003tqi.2_Missense_Mutation_p.P622S|EGFR_uc003tqj.2_Missense_Mutation_p.P622S|EGFR_uc010kzg.1_Missense_Mutation_p.P577S|EGFR_uc011kco.1_Missense_Mutation_p.P569S|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_RNA|EGFR_uc003tqn.2_RNA	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	622	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CCTGTGCCATCCAAACTGCAC	0.532		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			12	37					0	0	0.001855	0	0
LOC168474	168474	broad.mit.edu	37	7	64313496	64313496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:64313496G>A	uc003ttj.1	-	1	683	c.131C>T	c.(130-132)TCC>TTC	p.S44F		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						TTGAACCAAGGAAAGCCCACC	0.463													16	35					0	0	0.004007	0	0
CALN1	83698	broad.mit.edu	37	7	71571220	71571220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:71571220C>T	uc003twa.3	-	3	705	c.178G>A	c.(178-180)GAG>AAG	p.E60K	CALN1_uc003twb.3_Missense_Mutation_p.E102K|CALN1_uc003twc.3_Missense_Mutation_p.E60K	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	60	EF-hand 1.|Cytoplasmic (Potential).|1 (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				ATGCCCAGCTCCTGCTTGGAG	0.562													8	27					0	0	0.004482	0	0
POM121	9883	broad.mit.edu	37	7	72413768	72413768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:72413768C>T	uc003twk.2	+	11	3236	c.3236C>T	c.(3235-3237)ACC>ATC	p.T1079I	POM121_uc003twj.2_Missense_Mutation_p.T814I|POM121_uc010lam.1_Missense_Mutation_p.T814I	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1079	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				ACCACCCAGACCGCCAGCAGC	0.672													10	22					0	0	0.008291	0	0
MLXIPL	51085	broad.mit.edu	37	7	73011984	73011984	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:73011984G>A	uc003tyn.1	-	9	1179	c.1131C>T	c.(1129-1131)CTC>CTT	p.L377L	MLXIPL_uc003tyj.1_5'UTR|MLXIPL_uc003tyk.1_Silent_p.L377L|MLXIPL_uc003tyl.1_Silent_p.L377L|MLXIPL_uc003tym.1_Silent_p.L377L|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Silent_p.L284L|MLXIPL_uc003tyq.1_Silent_p.L119L	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	377					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				CTTCAGGAAGGAGGAAATCAG	0.652													8	18					0	0	0.004482	0	0
PCLO	27445	broad.mit.edu	37	7	82546143	82546143	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:82546143A>C	uc003uhx.2	-	7	11448	c.11159T>G	c.(11158-11160)GTT>GGT	p.V3720G	PCLO_uc003uhv.2_Missense_Mutation_p.V3720G|PCLO_uc010lec.2_Missense_Mutation_p.V685G	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3651					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGTTCTTTTAACTTTTTTCTG	0.383													23	54					0	0	0.009535	0	0
PCLO	27445	broad.mit.edu	37	7	82785521	82785521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:82785521C>T	uc003uhx.2	-	2	725	c.436G>A	c.(436-438)GAA>AAA	p.E146K	PCLO_uc003uhv.2_Missense_Mutation_p.E146K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	146					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGTGCTCTTCCTTTAAATCA	0.403													11	33					0	0	0.008291	0	0
SAMD9	54809	broad.mit.edu	37	7	92730772	92730772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:92730772C>T	uc003umf.2	-	3	4895	c.4639G>A	c.(4639-4641)GAA>AAA	p.E1547K	SAMD9_uc003umg.2_Missense_Mutation_p.E1547K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1547						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GTGATTTTTTCATTGATTCCA	0.388													15	27					0	0	0.002450	0	0
SAMD9	54809	broad.mit.edu	37	7	92735076	92735076	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:92735076T>C	uc003umf.2	-	3	591	c.335A>G	c.(334-336)CAA>CGA	p.Q112R	SAMD9_uc003umg.2_Missense_Mutation_p.Q112R	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	112						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CTTTTGTTTTTGCTTTGAAGT	0.383													5	75					0	0	0.000602	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92848717	92848717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:92848717C>T	uc003umm.2	-	2	150	c.127G>A	c.(127-129)GGC>AGC	p.G43S	HEPACAM2_uc003uml.2_Missense_Mutation_p.G31S|HEPACAM2_uc010lff.2_Missense_Mutation_p.G31S|HEPACAM2_uc011khy.1_Missense_Mutation_p.G66S	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	43	Extracellular (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						CCTCTGACGCCATGGACAGTG	0.512													16	65					0	0	0.004007	0	0
LRWD1	222229	broad.mit.edu	37	7	102110281	102110281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:102110281G>A	uc003uzn.2	+	11	1532	c.1394G>A	c.(1393-1395)GGC>GAC	p.G465D	LRWD1_uc003uzo.2_Missense_Mutation_p.G313D	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	465	WD 2.				chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						GGCTGCGAGGGCGGCTGCTGC	0.711													9	25					0	0	0.006214	0	0
RELN	5649	broad.mit.edu	37	7	103113260	103113260	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:103113260C>T	uc003vca.2	-	66	10542	c.10382G>A	c.(10381-10383)TGA>TAA	p.*3461*	RELN_uc010liz.2_Silent_p.*3459*	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3461					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TTTGATTCTTCATGGGTATCG	0.323													7	16					0	0	0.001984	0	0
RELN	5649	broad.mit.edu	37	7	103143606	103143606	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:103143606G>A	uc003vca.2	-	52	8506	c.8346C>T	c.(8344-8346)TTC>TTT	p.F2782F	RELN_uc010liz.2_Silent_p.F2782F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2782	BNR 13.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AACTCACACCGAAGTCAGTAG	0.408													9	32					0	0	0.006214	0	0
PIK3CG	5294	broad.mit.edu	37	7	106513233	106513233	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:106513233T>C	uc003vdv.3	+	4	2222	c.2137T>C	c.(2137-2139)TTC>CTC	p.F713L	PIK3CG_uc003vdu.2_Missense_Mutation_p.F713L|PIK3CG_uc003vdw.2_Missense_Mutation_p.F713L	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	713					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TCAGCAGAGGTTCGCTGTGAT	0.458													18	51					0	0	0.008871	0	0
SLC26A3	1811	broad.mit.edu	37	7	107408071	107408071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:107408071C>T	uc003ver.2	-	20	2435	c.2224G>A	c.(2224-2226)GAT>AAT	p.D742N	SLC26A3_uc003ves.2_Missense_Mutation_p.D629N	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	742					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						ATGGTAAAATCAATTTTTCCA	0.323													7	10					0	0	0.004482	0	0
LAMB1	3912	broad.mit.edu	37	7	107564460	107564460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:107564460C>T	uc003vew.2	-	34	5632	c.5297G>A	c.(5296-5298)GGA>GAA	p.G1766E	LAMB1_uc003vev.2_Missense_Mutation_p.G1790E|LAMB1_uc003veu.2_Missense_Mutation_p.G249E	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1766	Potential.|Domain I.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACGGACTTCTCCTTCCAGTCT	0.358													6	30					0	0	0.001168	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519234	113519234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:113519234G>A	uc010ljy.1	-	4	1944	c.1913C>T	c.(1912-1914)TCA>TTA	p.S638L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	638					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						AATCCCACCTGATTTTTCTTC	0.378													14	31					0	0	0.001855	0	0
ST7	7982	broad.mit.edu	37	7	116869938	116869938	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:116869938A>C	uc011knn.1	+	14	1470	c.1465A>C	c.(1465-1467)ACC>CCC	p.T489P	ST7_uc003vio.2_3'UTR|ST7_uc003viq.2_3'UTR|ST7_uc011knm.1_3'UTR|ST7_uc003vir.2_3'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	Error:Variant_position_missing_in_Q9NRC1_after_alignment						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CACTCACCTCACCCGCCGCTG	0.507													8	26					0	0	0.002836	0	0
ASZ1	136991	broad.mit.edu	37	7	117003787	117003787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:117003787C>T	uc003vjb.2	-	13	1354	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K	ASZ1_uc011kno.1_Missense_Mutation_p.E422K|ASZ1_uc011knp.1_Missense_Mutation_p.E223K	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	431					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			GGATCATTTTCCCGTTCATTT	0.284													6	18					0	0	0.001168	0	0
KCND2	3751	broad.mit.edu	37	7	120382645	120382645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:120382645G>A	uc003vjj.1	+	4	2421	c.1456G>A	c.(1456-1458)GAA>AAA	p.E486K		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	486	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TCACTGCCTGGAAAAAACCAC	0.473													20	38					0	0	0.001882	0	0
SLC13A1	6561	broad.mit.edu	37	7	122821054	122821054	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:122821054G>A	uc003vkm.2	-	2	226	c.201C>T	c.(199-201)CCC>CCT	p.P67P	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	67						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TCCCAAACATGGGTAACATTA	0.403													9	23					0	0	0.006214	0	0
ASB15	142685	broad.mit.edu	37	7	123269216	123269216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:123269216G>A	uc003vku.1	+	10	1460	c.1168G>A	c.(1168-1170)GCC>ACC	p.A390T	ASB15_uc003vkw.1_Missense_Mutation_p.A390T	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	390	ANK 8.				intracellular signal transduction					skin(2)|lung(1)	3						TGCAGTGAGGGCCAATAATTA	0.438													9	43					0	0	0.006214	0	0
SPAM1	6677	broad.mit.edu	37	7	123593715	123593715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:123593715C>T	uc003vld.2	+	4	493	c.91C>T	c.(91-93)CCA>TCA	p.P31S	SPAM1_uc003vle.2_Missense_Mutation_p.P31S|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.P31S|SPAM1_uc010lku.2_Missense_Mutation_p.P31S	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	31					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	CCTTCTGATTCCATGTTGCTT	0.403													9	18					0	0	0.006214	0	0
FSCN3	29999	broad.mit.edu	37	7	127235401	127235401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:127235401C>T	uc003vmd.1	+	2	404	c.185C>T	c.(184-186)GCC>GTC	p.A62V	FSCN3_uc003vmc.1_Missense_Mutation_p.A17V|FSCN3_uc011kog.1_RNA|FSCN3_uc011koh.1_5'UTR|FSCN3_uc010llc.1_Missense_Mutation_p.A62V	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	62						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						GAGACACAGGCCGTGGTGCGA	0.562													10	33					0	0	0.008291	0	0
FLNC	2318	broad.mit.edu	37	7	128484134	128484134	+	Silent	SNP	G	A	A	rs61737781	by1000genomes	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:128484134G>A	uc003vnz.3	+	20	3215	c.3006G>A	c.(3004-3006)CGG>CGA	p.R1002R	FLNC_uc003voa.3_Silent_p.R1002R	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1002	Filamin 8.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TGGATGTGCGGATGACTTCGC	0.662													12	22					0	0	0.000978	0	0
AKR1B10	57016	broad.mit.edu	37	7	134217804	134217804	+	Missense_Mutation	SNP	G	A	A	rs148486050		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:134217804G>A	uc003vrr.2	+	4	720	c.400G>A	c.(400-402)GGA>AGA	p.G134R		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	134					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding	p.G134R(1)		skin(5)	5						TGCCATCGGTGGAAAAGCAAC	0.453													34	76					0	0	0.006999	0	0
AKR1D1	6718	broad.mit.edu	37	7	137801379	137801379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:137801379C>T	uc003vtz.2	+	9	1021	c.952C>T	c.(952-954)CCT>TCT	p.P318S	AKR1D1_uc011kqe.1_Missense_Mutation_p.S290F|AKR1D1_uc011kqf.1_Missense_Mutation_p.P277S|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	318					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						GCGCGATCATCCTGAATACCC	0.448													31	75					0	0	0.003271	0	0
ADCK2	90956	broad.mit.edu	37	7	140389516	140389516	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:140389516C>T	uc003vvy.1	+	6	1855	c.1677C>T	c.(1675-1677)ACC>ACT	p.T559T	ADCK2_uc003vvz.2_Silent_p.T559T	NM_052853	NP_443085	Q7Z695	ADCK2_HUMAN	aarF domain containing kinase 2	559	Protein kinase.					integral to membrane	ATP binding|protein serine/threonine kinase activity				0	Melanoma(164;0.00956)					ACACCATCACCCTGGAGAAGG	0.607													7	17					0	0	0.001984	0	0
MGAM	8972	broad.mit.edu	37	7	141708471	141708471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:141708471G>A	uc003vwy.2	+	3	347	c.293G>A	c.(292-294)CGA>CAA	p.R98Q		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	98	P-type 1.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GAATTGGAACGAATTAATTGC	0.403													14	32					0	0	0.004007	0	0
PRSS1	5644	broad.mit.edu	37	7	142460361	142460361	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:142460361G>A	uc003wak.2	+	4	551	c.534G>A	c.(532-534)AAG>AAA	p.K178K	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Silent_p.K118K	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	178	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ACCCTGGAAAGATTACCAGCA	0.542									Hereditary_Pancreatitis				42	114					0	0	0.008740	0	0
Unknown	0	broad.mit.edu	37	7	142499643	142499643	+	RNA	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:142499643C>T	uc003wbe.3	+	3		c.456C>T			uc003wbf.3_RNA|uc003wbh.3_Missense_Mutation_p.S181F|uc003wbi.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T cell receptor V beta14-D-J, partial cds.																		GGCTTCACCTCCGGTAAGTGA	0.507													95	256					0	0	0.003610	0	0
OR6B1	135946	broad.mit.edu	37	7	143701745	143701745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:143701745G>A	uc003wdt.1	+	1	656	c.656G>A	c.(655-657)GGA>GAA	p.G219E		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	219	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					CTGTCCTACGGATGCATTCTG	0.473													33	74					0	0	0.002445	0	0
NOBOX	135935	broad.mit.edu	37	7	144098513	144098513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:144098513C>T	uc011kue.1	-	4	470	c.470G>A	c.(469-471)AGA>AAA	p.R157K		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	157					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					CGGGCACAGTCTCCCAGCATC	0.637													14	33					0	0	0.002450	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147092827	147092827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:147092827G>A	uc003weu.1	+	10	2141	c.1625G>A	c.(1624-1626)GGA>GAA	p.G542E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	542	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AGGAAGCCGGGAAGTTTCGCG	0.438										HNSCC(39;0.1)			17	47					0	0	0.007413	0	0
ZNF398	57541	broad.mit.edu	37	7	148863293	148863293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:148863293C>T	uc003wfl.2	+	3	739	c.464C>T	c.(463-465)CCA>CTA	p.P155L	ZNF398_uc011kul.1_5'UTR|ZNF398_uc011kum.1_Missense_Mutation_p.P160L	NM_170686	NP_733787	Q8TD17	ZN398_HUMAN	zinc finger 398 isoform a	155	KRAB.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00143)			TTTTCCACTCCAGAGTGGGAA	0.398													14	45					0	0	0.002450	0	0
SSPO	23145	broad.mit.edu	37	7	149486764	149486764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:149486764G>A	uc010lpk.2	+	31	4538	c.4538G>A	c.(4537-4539)GGA>GAA	p.G1513E		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1513	LDL-receptor class A 4.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGTGTGACGGAGTCTGGGAC	0.657													5	9					0	0	0.000602	0	0
SSPO	23145	broad.mit.edu	37	7	149497078	149497078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:149497078C>T	uc010lpk.2	+	49	7118	c.7118C>T	c.(7117-7119)CCA>CTA	p.P2373L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2373					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCTGTGACTCCAGCGACCCCT	0.617													10	34					0	0	0.000978	0	0
GIMAP4	55303	broad.mit.edu	37	7	150270001	150270001	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:150270001G>A	uc003whl.2	+	3	925	c.843G>A	c.(841-843)AAG>AAA	p.K281K	GIMAP4_uc011kuu.1_Silent_p.K142K|GIMAP4_uc011kuv.1_Silent_p.K295K	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	281	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAATGGAGAAGAAACTAGCAG	0.443													5	21					0	0	0.000602	0	0
KCNH2	3757	broad.mit.edu	37	7	150645555	150645555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:150645555G>A	uc003wic.2	-	11	2682	c.2669C>T	c.(2668-2670)TCC>TTC	p.S890F	KCNH2_uc003wib.2_Missense_Mutation_p.S550F|KCNH2_uc011kux.1_Missense_Mutation_p.S794F	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	890	Cytoplasmic (Potential).			S->A: Abolishes phosphorylation; when associated with A-283; A-895 and A-1137.	blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	CCTGCGGAAGGACAACTTGCG	0.363													5	36					0	0	0.000602	0	0
KCNH2	3757	broad.mit.edu	37	7	150648080	150648080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:150648080G>A	uc003wic.2	-	8	2087	c.2074C>T	c.(2074-2076)CCC>TCC	p.P692S	KCNH2_uc003wib.2_Missense_Mutation_p.P352S|KCNH2_uc011kux.1_Missense_Mutation_p.P596S|KCNH2_uc003wid.2_Missense_Mutation_p.P352S|KCNH2_uc003wie.2_Missense_Mutation_p.P692S	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	692	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TGGCGCAGGGGATTGGGGATC	0.647													18	29					0	0	0.007413	0	0
NOS3	4846	broad.mit.edu	37	7	150695756	150695756	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:150695756G>A	uc003wif.2	+	7	1100	c.804G>A	c.(802-804)GTG>GTA	p.V268V	NOS3_uc011kuy.1_Silent_p.V62V|NOS3_uc011kuz.1_Silent_p.V268V|NOS3_uc011kva.1_Silent_p.V268V|NOS3_uc011kvb.1_Silent_p.V268V	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	268	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CAGCCAACGTGGAGATCACCG	0.657													6	13					0	0	0.001168	0	0
ATG9B	285973	broad.mit.edu	37	7	150718281	150718281	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:150718281G>A	uc011kvc.1	-	5	1033	c.957C>T	c.(955-957)ATC>ATT	p.I319I	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	319	Cytoplasmic (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCACCGGGGGGATGTGCAGGG	0.617													25	62					0	0	0.007291	0	0
GALNTL5	168391	broad.mit.edu	37	7	151704929	151704929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:151704929G>A	uc003wkp.2	+	7	1149	c.926G>A	c.(925-927)GGA>GAA	p.G309E	GALNTL5_uc003wkq.2_Missense_Mutation_p.G60E|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.G198E	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	309	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		GCAATGTCTGGAGGAATTTTT	0.323													15	37					0	0	0.004990	0	0
MYOM2	9172	broad.mit.edu	37	8	2063855	2063855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:2063855G>A	uc003wpx.3	+	26	3422	c.3284G>A	c.(3283-3285)GGG>GAG	p.G1095E	MYOM2_uc011kwi.1_Missense_Mutation_p.G520E	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1095					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		ATTCATGATGGGAAAGCCAAA	0.358													10	26					0	0	0.006214	0	0
CSMD1	64478	broad.mit.edu	37	8	3200886	3200886	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:3200886G>A	uc011kwk.1	-	23	3954	c.3564C>T	c.(3562-3564)TCC>TCT	p.S1188S	CSMD1_uc011kwj.1_Silent_p.S580S|CSMD1_uc003wqe.2_Silent_p.S344S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1188	Extracellular (Potential).|CUB 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ACAGGTGATTGGATGTGCTGT	0.428													15	29					0	0	0.003163	0	0
CSMD1	64478	broad.mit.edu	37	8	3267060	3267060	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:3267060G>A	uc011kwk.1	-	13	2022	c.1632C>T	c.(1630-1632)TTC>TTT	p.F544F	CSMD1_uc011kwj.1_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	544	Extracellular (Potential).|Sushi 3.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTCCATGGAGGAAACTGCTGC	0.507													4	5					0	0	0.009096	0	0
RP1L1	94137	broad.mit.edu	37	8	10467708	10467708	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:10467708C>T	uc003wtc.2	-	4	4129	c.3900G>A	c.(3898-3900)GAG>GAA	p.E1300E		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1300					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTAATTGCACCTCTTCTTGCA	0.303													17	50					0	0	0.007413	0	0
RP1L1	94137	broad.mit.edu	37	8	10470524	10470524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:10470524C>T	uc003wtc.2	-	4	1313	c.1084G>A	c.(1084-1086)GTA>ATA	p.V362I		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	362					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AGGGGGTCTACCTCCCCCAGA	0.682													27	34					0	0	0.005443	0	0
TUSC3	7991	broad.mit.edu	37	8	15480671	15480671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:15480671G>A	uc003wwt.2	+	2	431	c.221G>A	c.(220-222)CGA>CAA	p.R74Q	TUSC3_uc003wwr.2_Missense_Mutation_p.R74Q|TUSC3_uc003wws.2_Missense_Mutation_p.R74Q|TUSC3_uc003wwu.2_Missense_Mutation_p.R74Q|TUSC3_uc003wwv.2_Missense_Mutation_p.R74Q|TUSC3_uc003www.2_Missense_Mutation_p.R74Q|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Missense_Mutation_p.R74Q	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	74					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		GATAAATTCCGAAAATTTATA	0.393													6	22					0	0	0.001168	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24251642	24251642	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:24251642C>T	uc003xdz.2	+	4	565	c.345C>T	c.(343-345)ACC>ACT	p.T115T	ADAMDEC1_uc010lub.2_Silent_p.T36T|ADAMDEC1_uc011lab.1_Silent_p.T36T	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	115					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		AGGAAATTACCACGAAACCTG	0.458													5	14					0	0	0.000602	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24251645	24251645	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:24251645G>A	uc003xdz.2	+	4	568	c.348G>A	c.(346-348)ACG>ACA	p.T116T	ADAMDEC1_uc010lub.2_Silent_p.T37T|ADAMDEC1_uc011lab.1_Silent_p.T37T	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	116					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		AAATTACCACGAAACCTGAGA	0.458													3	14					0	0	0.004672	0	0
ADAM7	8756	broad.mit.edu	37	8	24299996	24299996	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:24299996C>T	uc003xeb.2	+	2	176	c.63C>T	c.(61-63)ATC>ATT	p.I21I	ADAM7_uc003xea.1_Silent_p.I21I	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	21	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		AAAAGTTCATCCTTGGAGTAG	0.408													28	86					0	0	0.008361	0	0
CDCA2	157313	broad.mit.edu	37	8	25343351	25343351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:25343351C>T	uc003xep.1	+	11	1921	c.1442C>T	c.(1441-1443)TCA>TTA	p.S481L	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Missense_Mutation_p.S481L|CDCA2_uc003xeq.1_Missense_Mutation_p.S466L|CDCA2_uc003xer.1_Missense_Mutation_p.S144L	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	481					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		GAGACCCTTTCAGGTAGTAAC	0.279													8	18					0	0	0.004482	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37734739	37734739	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:37734739G>A	uc003xkm.1	-	2	746	c.702C>T	c.(700-702)TCC>TCT	p.S234S	RAB11FIP1_uc010lvz.1_Silent_p.S82S|RAB11FIP1_uc003xkn.1_Silent_p.S234S|RAB11FIP1_uc003xkp.1_Silent_p.S82S	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	234					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			GGACAGACATGGACTGGGAAA	0.453													23	45					0	0	0.004656	0	0
ADAM2	2515	broad.mit.edu	37	8	39691492	39691492	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:39691492C>T	uc003xnj.2	-	3	234	c.159G>A	c.(157-159)GGG>GGA	p.G53G	ADAM2_uc003xnk.2_Silent_p.G53G|ADAM2_uc011lck.1_Silent_p.G53G|ADAM2_uc003xnl.2_Silent_p.G53G	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	53					cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TATATGGTTTCCCTTCAATTA	0.289													5	18					0	0	0.000602	0	0
PRKDC	5591	broad.mit.edu	37	8	48749810	48749810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:48749810G>A	uc003xqi.2	-	58	7781	c.7724C>T	c.(7723-7725)CCC>CTC	p.P2575L	PRKDC_uc003xqj.2_Missense_Mutation_p.P2575L|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2575	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CTCGAACATGGGGTTTGGATA	0.373								NHEJ					9	11					0	0	0.004482	0	0
UBE2V2	7336	broad.mit.edu	37	8	48962467	48962468	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:48962467_48962468CC>AT	uc003xqm.2	+	3	241_242	c.220_221CC>AT	c.(220-222)CCA>ATA	p.P74I		NM_003350	NP_003341	Q15819	UB2V2_HUMAN	ubiquitin-conjugating enzyme E2v2	74					cell proliferation|DNA double-strand break processing|protein polyubiquitination|regulation of DNA repair	cytoplasm|nucleus|UBC13-MMS2 complex	acid-amino acid ligase activity|protein binding				0		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00171)|all_lung(136;0.00196)				ACCTAAATACCCAGAAGCTCCT	0.297								Direct_reversal_of_damage|Rad6_pathway					6	22					0	0	0.004672	0	0
PXDNL	137902	broad.mit.edu	37	8	52384800	52384800	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:52384800G>A	uc003xqu.3	-	8	860	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	253	Ig-like C2-type 1.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCCGGCAGGTGAAGTAGACGG	0.443													29	72					0	0	0.003271	0	0
OPRK1	4986	broad.mit.edu	37	8	54141901	54141901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:54141901G>A	uc003xrh.1	-	3	1474	c.1099C>T	c.(1099-1101)CCT>TCT	p.P367S	OPRK1_uc003xri.1_Missense_Mutation_p.P367S|OPRK1_uc010lyc.1_Missense_Mutation_p.P278S	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	367	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	AGGTAAGCAGGATCCTGAACT	0.478													11	44					0	0	0.000978	0	0
OPRK1	4986	broad.mit.edu	37	8	54142134	54142134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:54142134G>A	uc003xrh.1	-	3	1241	c.866C>T	c.(865-867)CCC>CTC	p.P289L	OPRK1_uc003xri.1_Missense_Mutation_p.P289L|OPRK1_uc010lyc.1_Missense_Mutation_p.P200L	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	289	Helical; Name=6; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	TATGTGAATGGGAGTCCAGCA	0.567													8	19					0	0	0.004482	0	0
XKR4	114786	broad.mit.edu	37	8	56435931	56435931	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:56435931C>T	uc003xsf.2	+	3	1130	c.1098C>T	c.(1096-1098)CCC>CCT	p.P366P		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	366	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			ACAAGAAGCCCATCAGCTACA	0.587													12	34					0	0	0.002450	0	0
XKR4	114786	broad.mit.edu	37	8	56436558	56436558	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:56436558G>A	uc003xsf.2	+	3	1757	c.1725G>A	c.(1723-1725)GTG>GTA	p.V575V		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	575						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TCTTTCAAGTGAGGCCCACTG	0.532													17	48					0	0	0.008871	0	0
TTPA	7274	broad.mit.edu	37	8	63978529	63978529	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:63978529A>G	uc003xux.1	-	3	518	c.486T>C	c.(484-486)GGT>GGC	p.G162G		NM_000370	NP_000361	P49638	TTPA_HUMAN	tocopherol (alpha) transfer protein	162	CRAL-TRIO.				lipid metabolic process		transporter activity|vitamin E binding				0	Breast(64;0.0716)	all_cancers(86;0.145)|Lung NSC(129;0.0324)|all_lung(136;0.0593)|all_epithelial(80;0.123)			Vitamin E(DB00163)	AAAACTGCCAACCTTCCAGAT	0.398													6	16					0	0	0.001984	0	0
CYP7B1	9420	broad.mit.edu	37	8	65527628	65527628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:65527628G>A	uc003xvj.2	-	4	1216	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	338					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AGGTGGATGGGAAATCCAGAC	0.443													6	21					0	0	0.003080	0	0
CYP7B1	9420	broad.mit.edu	37	8	65528560	65528560	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:65528560G>A	uc003xvj.2	-	3	742	c.538C>T	c.(538-540)CTG>TTG	p.L180L		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	180					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AATGGATACAGTTCTGCCGTG	0.353													14	24					0	0	0.003163	0	0
CYP7B1	9420	broad.mit.edu	37	8	65537059	65537059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:65537059G>A	uc003xvj.2	-	2	364	c.160C>T	c.(160-162)CCT>TCT	p.P54S		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	54					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				CCAAGATAAGGAAGCCAACCT	0.378													17	61					0	0	0.008871	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68139385	68139385	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:68139385G>A	uc003xxo.1	-	27	4293	c.3903C>T	c.(3901-3903)ACC>ACT	p.T1301T	ARFGEF1_uc003xxl.1_Silent_p.T755T|ARFGEF1_uc003xxn.1_Silent_p.T284T	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	1301					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			CAATGTGCCCGGTTGTTTGGA	0.373													9	23					0	0	0.006214	0	0
SULF1	23213	broad.mit.edu	37	8	70515487	70515487	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:70515487C>T	uc010lza.1	+	11	1839	c.1122C>T	c.(1120-1122)CTC>CTT	p.L374L	SULF1_uc003xyd.2_Silent_p.L374L|SULF1_uc003xye.2_Silent_p.L374L|SULF1_uc003xyf.2_Silent_p.L374L|SULF1_uc003xyg.2_Silent_p.L374L|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	374					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			TTGCTGGGCTCGACACACCTC	0.547													18	58					0	0	0.006122	0	0
STAU2	27067	broad.mit.edu	37	8	74495023	74495023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:74495023G>A	uc003xzm.2	-	12	1440	c.1204C>T	c.(1204-1206)CCT>TCT	p.P402S	STAU2_uc011lfg.1_Missense_Mutation_p.P230S|STAU2_uc003xzn.2_Missense_Mutation_p.P370S|STAU2_uc011lfh.1_Missense_Mutation_p.P298S|STAU2_uc003xzo.2_Missense_Mutation_p.P402S|STAU2_uc003xzp.2_Missense_Mutation_p.P370S|STAU2_uc011lfi.1_Missense_Mutation_p.P364S|STAU2_uc003xzq.2_Missense_Mutation_p.P182S|STAU2_uc010lzk.2_Missense_Mutation_p.P370S|STAU2_uc010lzl.1_Missense_Mutation_p.P230S	NM_014393	NP_055208	Q9NUL3	STAU2_HUMAN	staufen homolog 2 isoform e	402	Required for dendritic transport (By similarity).|Nuclear localization signal 2 (By similarity).				transport	endoplasmic reticulum|microtubule|nucleolus	double-stranded RNA binding				0	Breast(64;0.0138)		Epithelial(68;0.026)|BRCA - Breast invasive adenocarcinoma(89;0.0483)|all cancers(69;0.0972)			GTTGGTTCAGGAAACCCAGGC	0.398													13	31					0	0	0.003163	0	0
JPH1	56704	broad.mit.edu	37	8	75227454	75227454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:75227454C>T	uc003yae.2	-	2	821	c.781G>A	c.(781-783)GAT>AAT	p.D261N	JPH1_uc003yaf.2_Missense_Mutation_p.D261N|JPH1_uc003yag.1_Missense_Mutation_p.D125N	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	261	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CAATCTACATCGCCAAAGCTG	0.567													14	38					0	0	0.001855	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617294	77617294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:77617294G>A	uc003yav.2	+	2	1358	c.971G>A	c.(970-972)GGG>GAG	p.G324E	ZFHX4_uc003yat.1_Missense_Mutation_p.G324E|ZFHX4_uc003yau.1_Missense_Mutation_p.G324E|ZFHX4_uc003yaw.1_Missense_Mutation_p.G324E	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	324						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATAATACAGGGGATTGGCAAA	0.433										HNSCC(33;0.089)			15	46					0	0	0.004990	0	0
ZFHX4	79776	broad.mit.edu	37	8	77620131	77620131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:77620131G>A	uc003yav.2	+	3	3250	c.2863G>A	c.(2863-2865)GGC>AGC	p.G955S	ZFHX4_uc003yat.1_Missense_Mutation_p.G955S|ZFHX4_uc003yau.1_Missense_Mutation_p.G981S|ZFHX4_uc003yaw.1_Missense_Mutation_p.G955S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	955						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TAAAGAAGGGGGCAAAAGCAA	0.428										HNSCC(33;0.089)			11	49					0	0	0.001368	0	0
CA1	759	broad.mit.edu	37	8	86240894	86240894	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:86240894G>A	uc003ydh.2	-	9	881	c.681C>T	c.(679-681)TTC>TTT	p.F227F	CA13_uc003ydf.1_Intron|CA1_uc010mae.1_Silent_p.F227F|CA1_uc003ydi.2_Silent_p.F227F	NM_001738	NP_001729	P00915	CAH1_HUMAN	carbonic anhydrase I	227					one-carbon metabolic process	Golgi apparatus	carbonate dehydratase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(136;4.89e-06)			Acetazolamide(DB00819)|Amlodipine(DB00381)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dichlorphenamide(DB01144)|Ethinamate(DB01031)|Ethoxzolamide(DB00311)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Levetiracetam(DB01202)|Methazolamide(DB00703)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)|Verapamil(DB00661)|Zonisamide(DB00909)	GAAGGCTGCGGAATTGTGCCA	0.383													24	46					0	0	0.004656	0	0
SLC7A13	157724	broad.mit.edu	37	8	87242503	87242503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:87242503C>T	uc003ydq.1	-	1	102	c.4G>A	c.(4-6)GAT>AAT	p.D2N	SLC7A13_uc003ydr.1_Missense_Mutation_p.D2N	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	2	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						TCCCCTCTATCCATTGTAATT	0.343													13	24					0	0	0.003163	0	0
PTDSS1	9791	broad.mit.edu	37	8	97332525	97332525	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:97332525C>T	uc003yht.1	+	10	1227	c.1125C>T	c.(1123-1125)CTC>CTT	p.L375L	PTDSS1_uc003yhu.1_Silent_p.L229L	NM_014754	NP_055569	P48651	PTSS1_HUMAN	phosphatidylserine synthase 1	375	Helical; (Potential).				phosphatidylserine biosynthetic process	integral to membrane	transferase activity			ovary(1)	1	Breast(36;6.18e-05)				Phosphatidylserine(DB00144)	GACAAGATCTCTTCTCTAAGA	0.398													20	74					0	0	0.008871	0	0
VPS13B	157680	broad.mit.edu	37	8	100523548	100523548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:100523548C>T	uc003yiv.2	+	29	4627	c.4516C>T	c.(4516-4518)CCT>TCT	p.P1506S	VPS13B_uc003yiw.2_Missense_Mutation_p.P1481S|VPS13B_uc003yix.1_Missense_Mutation_p.P976S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1506					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TCTTTATTTTCCTTTACTTAA	0.353													7	22					0	0	0.001984	0	0
VPS13B	157680	broad.mit.edu	37	8	100847491	100847491	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:100847491T>C	uc003yiv.2	+	53	9867	c.9756T>C	c.(9754-9756)AGT>AGC	p.S3252S	VPS13B_uc003yiw.2_Silent_p.S3227S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3252					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AAGACCCTAGTCCTCGAGTAA	0.343													7	21					0	0	0.003080	0	0
RGS22	26166	broad.mit.edu	37	8	101076099	101076099	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:101076099C>T	uc003yjb.1	-	8	1092	c.897G>A	c.(895-897)CAG>CAA	p.Q299Q	RGS22_uc003yja.1_Silent_p.Q118Q|RGS22_uc003yjc.1_Silent_p.Q287Q|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	299					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CATCAACATCCTGTTTCTTTT	0.313													25	49					0	0	0.006320	0	0
GRHL2	79977	broad.mit.edu	37	8	102678844	102678844	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:102678844C>T	uc010mbu.2	+	16	2121	c.1791C>T	c.(1789-1791)ATC>ATT	p.I597I		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	597						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			ATGACAACATCATCGAGCACT	0.547													12	26					0	0	0.000978	0	0
RIMS2	9699	broad.mit.edu	37	8	105260996	105260996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:105260996C>T	uc003yls.2	+	25	3839	c.3598C>T	c.(3598-3600)CCT>TCT	p.P1200S	RIMS2_uc003ylp.2_Missense_Mutation_p.P1182S|RIMS2_uc003ylw.2_Missense_Mutation_p.P1189S|RIMS2_uc003ylq.2_Missense_Mutation_p.P996S|RIMS2_uc003ylr.2_Missense_Mutation_p.P1021S	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1244					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGGCCTTGGCCCTGCTCAGCT	0.438										HNSCC(12;0.0054)			15	44					0	0	0.004007	0	0
TM7SF4	81501	broad.mit.edu	37	8	105361650	105361650	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:105361650G>A	uc003ylx.1	+	2	919	c.870G>A	c.(868-870)AGG>AGA	p.R290R		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	290					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTAAAGAAAGGAAAAACCTGG	0.493													24	56					0	0	0.003954	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814062	106814062	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:106814062C>T	uc003ymd.2	+	8	1775	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F	ZFPM2_uc011lhs.1_Silent_p.F315F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	584					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CCCCAGAGTTCCCTAGTGTGT	0.443													42	78					0	0	0.003610	0	0
ANGPT1	284	broad.mit.edu	37	8	108264107	108264107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:108264107C>T	uc003ymn.2	-	9	1941	c.1473G>A	c.(1471-1473)ATG>ATA	p.M491I	ANGPT1_uc011lhv.1_Missense_Mutation_p.M291I|ANGPT1_uc003ymo.2_Missense_Mutation_p.M490I	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	491	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			GTCGAATCATCATAGTTGTGG	0.413													17	37					0	0	0.004990	0	0
RSPO2	340419	broad.mit.edu	37	8	108970434	108970434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:108970434C>T	uc003yms.2	-	5	1148	c.490G>A	c.(490-492)GGA>AGA	p.G164R	RSPO2_uc003ymq.2_Missense_Mutation_p.G97R|RSPO2_uc003ymr.2_Missense_Mutation_p.G100R	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	164	TSP type-1.				Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CATTTAAATCCACATGTGCGA	0.388													10	34					0	0	0.008291	0	0
SLC30A8	169026	broad.mit.edu	37	8	118174004	118174004	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:118174004C>T	uc003yoh.2	+	5	830	c.600C>T	c.(598-600)TGC>TGT	p.C200C	SLC30A8_uc010mcz.2_Silent_p.C151C|SLC30A8_uc011lia.1_Silent_p.C151C|SLC30A8_uc003yog.2_Silent_p.C151C	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	200	HXXXXX[HY]NH-motif.|Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			ACCAGAGATGCCTTGGCCACA	0.443													69	188					0	0	0.003610	0	0
SLC30A8	169026	broad.mit.edu	37	8	118174023	118174023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:118174023G>A	uc003yoh.2	+	5	849	c.619G>A	c.(619-621)GAA>AAA	p.E207K	SLC30A8_uc010mcz.2_Missense_Mutation_p.E158K|SLC30A8_uc011lia.1_Missense_Mutation_p.E158K|SLC30A8_uc003yog.2_Missense_Mutation_p.E158K	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	207	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CAATCACAAGGAAGTACAAGC	0.428													80	195					0	0	0.003610	0	0
ZHX1	11244	broad.mit.edu	37	8	124267362	124267362	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:124267362C>T	uc003yqe.2	-	3	1255	c.825G>A	c.(823-825)TTG>TTA	p.L275L	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Silent_p.L275L|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Silent_p.L275L	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	275	Required for dimerization.|Required for interaction with NFYA.				negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			CTTTGGGAATCAAATTAGAAT	0.438													38	56					0	0	0.004878	0	0
FER1L6	654463	broad.mit.edu	37	8	125047670	125047670	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:125047670C>A	uc003yqw.2	+	19	2645	c.2439C>A	c.(2437-2439)CAC>CAA	p.H813Q	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	813	Cytoplasmic (Potential).|C2 3.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GCACCAATCACCCCCCATCTA	0.542													7	27					0.00198382	0.00201167	0.001984	1	0
POU5F1B	5462	broad.mit.edu	37	8	128428151	128428151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:128428151C>T	uc003ysf.2	+	1	295	c.40C>T	c.(40-42)CCT>TCT	p.P14S	uc003ysc.1_Intron|uc003ysd.1_Intron|LOC727677_uc003yse.1_Intron	NM_001159542	NP_001153014	Q06416	P5F1B_HUMAN	POU class 5 homeobox 1B	14						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTTCTCGCCCCCTCCAGGCGG	0.632													4	1					0	0	0.009096	0	0
ADCY8	114	broad.mit.edu	37	8	131896923	131896923	+	Missense_Mutation	SNP	C	T	T	rs147685814		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:131896923C>T	uc003ytd.3	-	8	2252	c.1996G>A	c.(1996-1998)GAA>AAA	p.E666K	ADCY8_uc010mds.2_Missense_Mutation_p.E666K	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	666	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding	p.E666K(1)		skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TTGTTAATTTCCTCAGGCCCA	0.438										HNSCC(32;0.087)			27	63					0	0	0.004656	0	0
ADCY8	114	broad.mit.edu	37	8	132051923	132051923	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:132051923G>A	uc003ytd.3	-	1	913	c.657C>T	c.(655-657)TTC>TTT	p.F219F	ADCY8_uc010mds.2_Silent_p.F219F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	219	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CAATGCCGGTGAAGAAGCCCA	0.622										HNSCC(32;0.087)			16	25					0	0	0.004007	0	0
EFR3A	23167	broad.mit.edu	37	8	132996524	132996524	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:132996524A>G	uc003yte.2	+	15	1915	c.1714A>G	c.(1714-1716)ATT>GTT	p.I572V		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	572						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			TATTGATCTCATTCGACTGGC	0.348													22	53					0	0	0.002780	0	0
TG	7038	broad.mit.edu	37	8	133895059	133895059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:133895059G>A	uc003ytw.2	+	8	931	c.890G>A	c.(889-891)TGC>TAC	p.C297Y		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	297	Thyroglobulin type-1 3.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TTTCCTCTAGGCCCCACAAAA	0.498													10	27					0	0	0.000978	0	0
ZFAT	57623	broad.mit.edu	37	8	135649738	135649738	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:135649738G>A	uc003yup.2	-	3	589	c.414C>T	c.(412-414)ATC>ATT	p.I138I	ZFAT_uc003yun.2_Silent_p.I126I|ZFAT_uc003yuo.2_Silent_p.I126I|ZFAT_uc010meh.2_Silent_p.I126I|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.I126I|ZFAT_uc010mej.2_Silent_p.I138I|ZFAT_uc003yur.2_Silent_p.I126I	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	138	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			AATTCAGCACGATAATGCAGA	0.507													23	61					0	0	0.003954	0	0
GML	2765	broad.mit.edu	37	8	143927901	143927901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:143927901G>A	uc003yxg.2	+	4	362	c.272G>A	c.(271-273)GGA>GAA	p.G91E		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	91	UPAR/Ly6.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane				central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GAAGCCCCAGGAAAAATCTTC	0.388													12	19					0	0	0.000978	0	0
TIGD5	84948	broad.mit.edu	37	8	144680469	144680469	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:144680469C>T	uc003yyx.1	+	1	249	c.249C>T	c.(247-249)TTC>TTT	p.F83F	EEF1D_uc011lki.1_5'Flank|EEF1D_uc011lkj.1_5'Flank|EEF1D_uc003yyr.2_5'Flank|EEF1D_uc003yyt.2_5'Flank|EEF1D_uc011lkk.1_5'Flank|EEF1D_uc003yys.2_5'Flank|EEF1D_uc003yyv.2_5'Flank|EEF1D_uc003yyu.2_5'Flank|EEF1D_uc011lkl.1_5'Flank	NM_032862	NP_116251	Q53EQ6	TIGD5_HUMAN	tigger transposable element derived 5	132					regulation of transcription, DNA-dependent	chromosome, centromeric region	DNA binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)			ACGCCTGGTTCCTGGCGCTGC	0.697													4	12					0	0	0.000602	0	0
EPPK1	83481	broad.mit.edu	37	8	144940269	144940269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:144940269C>T	uc003zaa.1	-	2	15176	c.15163G>A	c.(15163-15165)GGC>AGC	p.G5055S		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5055	Plectin 65.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCGAAGAAGCCCTTGGTGTCG	0.647													10	348					0	0	0.000978	0	0
NFKBIL2	4796	broad.mit.edu	37	8	145662289	145662289	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:145662289G>A	uc011llg.1	-	15	1756	c.1741C>T	c.(1741-1743)CTG>TTG	p.L581L	uc011llh.1_RNA	NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	581	ANK 2.				cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			TGGTCCAGCAGGAAGCGGACA	0.667													17	48					0	0	0.004990	0	0
FOXH1	8928	broad.mit.edu	37	8	145700562	145700562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr8:145700562G>A	uc003zdc.2	-	2	836	c.257C>T	c.(256-258)TCC>TTC	p.S86F		NM_003923	NP_003914	O75593	FOXH1_HUMAN	forkhead box H1	86	Fork-head.				axial mesoderm development|blood vessel development|cell migration involved in gastrulation|embryonic heart tube anterior/posterior pattern formation|floor plate formation|heart looping|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|specification of organ position|transforming growth factor beta receptor signaling pathway	activin responsive factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|R-SMAD binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.76e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			TCGGTTGGAGGAAAGGTTGTG	0.652													13	15					0	0	0.004007	0	0
PTPRD	5789	broad.mit.edu	37	9	8521361	8521361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:8521361C>T	uc003zkk.2	-	19	1588	c.877G>A	c.(877-879)GAT>AAT	p.D293N	PTPRD_uc003zkp.2_Missense_Mutation_p.D293N|PTPRD_uc003zkq.2_Missense_Mutation_p.D293N|PTPRD_uc003zkr.2_Missense_Mutation_p.D287N|PTPRD_uc003zks.2_Missense_Mutation_p.D283N|PTPRD_uc003zkl.2_Missense_Mutation_p.D293N|PTPRD_uc003zkm.2_Missense_Mutation_p.D280N|PTPRD_uc003zkn.2_Missense_Mutation_p.D293N|PTPRD_uc003zko.2_Missense_Mutation_p.D290N	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	293	Extracellular (Potential).|Ig-like C2-type 3.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGTCTTACATCATTCAGTTCT	0.433										TSP Lung(15;0.13)			14	22					0	0	0.003163	0	0
PTPRD	5789	broad.mit.edu	37	9	8521541	8521541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:8521541G>A	uc003zkk.2	-	19	1408	c.697C>T	c.(697-699)CGT>TGT	p.R233C	PTPRD_uc003zkp.2_Missense_Mutation_p.R233C|PTPRD_uc003zkq.2_Missense_Mutation_p.R233C|PTPRD_uc003zkr.2_Missense_Mutation_p.R227C|PTPRD_uc003zks.2_Missense_Mutation_p.R223C|PTPRD_uc003zkl.2_Missense_Mutation_p.R233C|PTPRD_uc003zkm.2_Missense_Mutation_p.R220C|PTPRD_uc003zkn.2_Missense_Mutation_p.R233C|PTPRD_uc003zko.2_Missense_Mutation_p.R230C	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	233	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GGTGGGACACGGCGAACTGGA	0.448										TSP Lung(15;0.13)			15	13					0	0	0.003163	0	0
FREM1	158326	broad.mit.edu	37	9	14792826	14792826	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:14792826A>C	uc003zlm.2	-	22	4486	c.3896T>G	c.(3895-3897)CTT>CGT	p.L1299R	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1299	CSPG 9.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TATGGCTGAAAGAATAGCACT	0.363													4	3					0	0	0.009096	0	0
FREM1	158326	broad.mit.edu	37	9	14859353	14859353	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:14859353C>T	uc003zlm.2	-	4	1049	c.459G>A	c.(457-459)GCG>GCA	p.A153A	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	153					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TTTTATCAATCGCTTGGGACA	0.488													37	34					0	0	0.006999	0	0
SLC24A2	25769	broad.mit.edu	37	9	19576974	19576974	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:19576974C>T	uc003zoa.1	-	5	1238	c.1176G>A	c.(1174-1176)AAG>AAA	p.K392K	SLC24A2_uc003zob.1_Silent_p.K375K	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	392	Cytoplasmic (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		CATGACATTTCTTCTTGGCGA	0.507													25	41					0	0	0.002096	0	0
KIF24	347240	broad.mit.edu	37	9	34306349	34306349	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:34306349T>C	uc003zua.3	-	3	834	c.714A>G	c.(712-714)GTA>GTG	p.V238V	KIF24_uc010mkb.2_Silent_p.V269V	NM_194313	NP_919289	Q5T7B8	KIF24_HUMAN	kinesin family member 24	238	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)			CTCCACGACGTACCTCCCTCA	0.408													49	139					0	0	0.003610	0	0
PRKACG	5568	broad.mit.edu	37	9	71628115	71628115	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:71628115G>A	uc004agy.2	-	1	925	c.894C>T	c.(892-894)TTC>TTT	p.F298F		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	298	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						TGGTTGTGGCGAACCACTTGT	0.567													30	68					0	0	0.003755	0	0
APBA1	320	broad.mit.edu	37	9	72047517	72047517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:72047517C>T	uc004ahh.2	-	12	2653	c.2377G>A	c.(2377-2379)GGA>AGA	p.G793R		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	793	PDZ 2.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						ACGCTCTGTCCATTGATTTCA	0.592													16	43					0	0	0.003163	0	0
SMC5	23137	broad.mit.edu	37	9	72965375	72965375	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:72965375C>T	uc004ahr.2	+	24	3270	c.3153C>T	c.(3151-3153)TTC>TTT	p.F1051F	SMC5_uc011lry.1_Silent_p.F196F	NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	1051					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						AATACTTTTTCATAACACCAA	0.348													14	29					0	0	0.002450	0	0
TRPM6	140803	broad.mit.edu	37	9	77339653	77339653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:77339653C>T	uc004ajl.1	-	39	6183	c.5945G>A	c.(5944-5946)AGA>AAA	p.R1982K	TRPM6_uc004ajk.1_Missense_Mutation_p.R1977K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.R933K|TRPM6_uc010mpd.1_Missense_Mutation_p.R815K|TRPM6_uc010mpe.1_Missense_Mutation_p.R529K|TRPM6_uc004ajj.1_Missense_Mutation_p.R938K	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1982	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ATAGTCATTTCTTTTTAAATC	0.413													13	31					0	0	0.002450	0	0
PCSK5	5125	broad.mit.edu	37	9	78784740	78784740	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:78784740G>A	uc004ajz.2	+	13	2278	c.1740G>A	c.(1738-1740)AGG>AGA	p.R580R	PCSK5_uc004ajy.2_Silent_p.R580R|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	580	Homo B/P.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CTCAGCTAAGGAACTTTAAGA	0.423													19	38					0	0	0.010504	0	0
PCSK5	5125	broad.mit.edu	37	9	78796501	78796501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:78796501G>A	uc004ajz.2	+	16	2729	c.2191G>A	c.(2191-2193)GAT>AAT	p.D731N	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Silent_p.R5R	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	731	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GTCATATCAGGATACCAGTAA	0.433													14	30					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	9	78947362	78947362	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:78947362G>A	uc004akc.1	+	6	979	c.759G>A	c.(757-759)GTG>GTA	p.V253V						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		CAACCTGTGTGAAGGACTGCC	0.527													9	32					0	0	0.006214	0	0
VPS13A	23230	broad.mit.edu	37	9	79890467	79890467	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:79890467C>T	uc004akr.2	+	25	2826	c.2566C>T	c.(2566-2568)CAG>TAG	p.Q856*	VPS13A_uc004akp.3_Nonsense_Mutation_p.Q856*|VPS13A_uc004akq.3_Nonsense_Mutation_p.Q856*|VPS13A_uc004aks.2_Nonsense_Mutation_p.Q856*	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	856					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						AGAACCTCTTCAGTTTCCAAC	0.313													31	53					0	0	0.003271	0	0
VPS13A	23230	broad.mit.edu	37	9	79933473	79933473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:79933473C>T	uc004akr.2	+	41	5539	c.5279C>T	c.(5278-5280)TCC>TTC	p.S1760F	VPS13A_uc004akp.3_Missense_Mutation_p.S1760F|VPS13A_uc004akq.3_Missense_Mutation_p.S1760F|VPS13A_uc004aks.2_Missense_Mutation_p.S1721F|VPS13A_uc004akt.2_Missense_Mutation_p.S100F|VPS13A_uc010mpo.1_Missense_Mutation_p.S356F	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1760					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						AACTGGAGTTCCCTAATAAAT	0.358													8	19					0	0	0.003080	0	0
VPS13A	23230	broad.mit.edu	37	9	79936611	79936611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:79936611C>T	uc004akr.2	+	44	6039	c.5779C>T	c.(5779-5781)CAT>TAT	p.H1927Y	VPS13A_uc004akp.3_Missense_Mutation_p.H1927Y|VPS13A_uc004akq.3_Missense_Mutation_p.H1927Y|VPS13A_uc004aks.2_Missense_Mutation_p.H1888Y|VPS13A_uc004akt.2_Missense_Mutation_p.H267Y	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1927					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						GGACAATGATCATTTCAATGC	0.328													10	34					0	0	0.008291	0	0
GNA14	9630	broad.mit.edu	37	9	80046330	80046330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:80046330G>A	uc004aku.2	-	4	1023	c.500C>T	c.(499-501)TCA>TTA	p.S167L		NM_004297	NP_004288	O95837	GNA14_HUMAN	G alpha 14	167					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(2)	2						AGGCACGAATGATGGTGTGGC	0.483													15	22					0	0	0.004990	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606491	84606491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:84606491C>T	uc004amn.2	+	4	1153	c.1106C>T	c.(1105-1107)TCT>TTT	p.S369F		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	369						integral to membrane					0						TCTTTTTCCTCTAATTTTGTG	0.483													11	39					0	0	0.008291	0	0
BICD2	23299	broad.mit.edu	37	9	95480098	95480098	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:95480098G>C	uc004aso.1	-	6	2296	c.2239C>G	c.(2239-2241)CGT>GGT	p.R747G	BICD2_uc004asp.1_Missense_Mutation_p.R747G	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	747	Interacts with RAB6A (By similarity).|Potential.				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						AACATAGCACGCAGCGAGGAG	0.577													9	19					0	0	0.004482	0	0
ZNF484	83744	broad.mit.edu	37	9	95609601	95609601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:95609601G>A	uc004asu.1	-	5	1617	c.1468C>T	c.(1468-1470)CAT>TAT	p.H490Y	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.H492Y|ZNF484_uc010mrb.1_Missense_Mutation_p.H454Y|ZNF484_uc004asv.1_Missense_Mutation_p.H454Y	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	490	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCCTGTATGAATTTTCTGG	0.393													14	31					0	0	0.001855	0	0
FGD3	89846	broad.mit.edu	37	9	95780429	95780429	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:95780429C>T	uc004asw.2	+	11	1915	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I	FGD3_uc004asx.2_Silent_p.I429I|FGD3_uc004asz.2_Silent_p.I429I|FGD3_uc004ata.2_Silent_p.I232I|FGD3_uc011luc.1_Silent_p.I32I	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	429	PH 1.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						TGCAGGATATCGTCAAGCCAA	0.463													16	51					0	0	0.001882	0	0
FANCC	2176	broad.mit.edu	37	9	98009753	98009753	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:98009753A>G	uc004avh.2	-	3	473	c.211T>C	c.(211-213)TTG>CTG	p.L71L	FANCC_uc004avi.3_Silent_p.L71L|FANCC_uc010mrm.1_RNA|FANCC_uc011lul.1_RNA	NM_000136	NP_000127	Q00597	FANCC_HUMAN	Fanconi anemia, complementation group C	71					protein complex assembly	cytosol|nucleoplasm	protein binding			kidney(1)	1		Acute lymphoblastic leukemia(62;0.138)				GCTTTTGCCAACAGTTGACCA	0.328			D|Mis|N|F|S			AML|leukemia		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				14	54					0	0	0.003163	0	0
PTCH1	5727	broad.mit.edu	37	9	98231303	98231303	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:98231303G>A	uc004avk.3	-	14	2168	c.1980C>T	c.(1978-1980)TCC>TCT	p.S660S	PTCH1_uc010mro.2_Silent_p.S509S|PTCH1_uc010mrp.2_Silent_p.S509S|PTCH1_uc010mrq.2_Silent_p.S509S|PTCH1_uc004avl.3_Silent_p.S509S|PTCH1_uc010mrr.2_Silent_p.S594S|PTCH1_uc004avm.3_Silent_p.S659S|PTCH1_uc010mrs.1_Silent_p.S328S	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	660	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GCTGGACAGTGGACTGCATGG	0.617									Basal_Cell_Nevus_syndrome				24	66					0	0	0.004656	0	0
COL15A1	1306	broad.mit.edu	37	9	101829170	101829170	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:101829170T>C	uc004azb.1	+	40	3864	c.3658T>C	c.(3658-3660)TTG>CTG	p.L1220L		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1220	Nonhelical region 10 (NC10).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TCAGCTGCATTTGGCTGCTCT	0.453													15	32					0	0	0.003163	0	0
OR13C4	138804	broad.mit.edu	37	9	107288635	107288635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:107288635C>T	uc011lvn.1	-	1	856	c.856G>A	c.(856-858)GTT>ATT	p.V286I		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GGGGTCACAACCCCATAAAAC	0.403													14	34					0	0	0.001855	0	0
OR13C5	138799	broad.mit.edu	37	9	107361157	107361157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:107361157C>T	uc011lvp.1	-	1	538	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GCTAGAATTTCACAGGTGAAA	0.423													28	68					0	0	0.005443	0	0
MUSK	4593	broad.mit.edu	37	9	113496631	113496631	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:113496631C>T	uc004bey.2	+	6	827	c.729C>T	c.(727-729)ATC>ATT	p.I243I	MUSK_uc004bex.2_Silent_p.I253I	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	243	Ig-like 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TCCCCACCATCACCTGGATTG	0.507													27	49					0	0	0.008361	0	0
OR2K2	26248	broad.mit.edu	37	9	114090048	114090048	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:114090048G>A	uc011lwp.1	-	1	666	c.666C>T	c.(664-666)TCC>TCT	p.S222S		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	251	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCAGAATAGTGGAAAGGATGA	0.453													7	17					0	0	0.003080	0	0
TNFSF8	944	broad.mit.edu	37	9	117680408	117680408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:117680408G>A	uc004bji.1	-	2	393	c.206C>T	c.(205-207)CCC>CTC	p.P69L		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	69	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						AGGTGAGTTGGGAATGGAGTC	0.373													3	12					0	0	0.000602	0	0
TNC	3371	broad.mit.edu	37	9	117808821	117808821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:117808821C>T	uc004bjj.3	-	17	5355	c.4993G>A	c.(4993-4995)GAA>AAA	p.E1665K	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1665	Fibronectin type-III 12.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						AGGGTTATTTCCAGTGGCTCA	0.478													29	60					0	0	0.008361	0	0
PAPPA	5069	broad.mit.edu	37	9	119115177	119115177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:119115177C>T	uc004bjn.2	+	16	4538	c.4157C>T	c.(4156-4158)TCC>TTC	p.S1386F	PAPPA_uc011lxq.1_Missense_Mutation_p.S761F	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1386	Sushi 3.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GTGCCTGGATCCTCTCGGAAG	0.517													3	10					0	0	0.009096	0	0
ASTN2	23245	broad.mit.edu	37	9	119738420	119738420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:119738420C>T	uc004bjs.1	-	9	1825	c.1724G>A	c.(1723-1725)GGG>GAG	p.G575E	ASTN2_uc004bjr.1_Missense_Mutation_p.G575E|ASTN2_uc004bjt.1_Missense_Mutation_p.G524E	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	575	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GGCTTGCTCCCCTGTCACCAG	0.498													15	44					0	0	0.010504	0	0
ASTN2	23245	broad.mit.edu	37	9	119903608	119903608	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:119903608G>A	uc004bjs.1	-	4	1266	c.1165C>T	c.(1165-1167)CGA>TGA	p.R389*	ASTN2_uc004bjr.1_Nonsense_Mutation_p.R389*|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	389	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GGCCTACCTCGAGACTTGCTC	0.577													10	24					0	0	0.001368	0	0
ASTN2	23245	broad.mit.edu	37	9	119976662	119976662	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:119976662T>C	uc004bjs.1	-	3	1091	c.990A>G	c.(988-990)GAA>GAG	p.E330E	ASTN2_uc004bjr.1_Silent_p.E330E|ASTN2_uc004bjt.1_Silent_p.E330E	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	330	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CCACCTTCTCTTCCCCTGGAT	0.567													25	57					0	0	0.003954	0	0
PTGS1	5742	broad.mit.edu	37	9	125152608	125152608	+	Silent	SNP	C	T	T	rs3842800	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:125152608C>T	uc004bmg.1	+	10	1563	c.1428C>T	c.(1426-1428)TCC>TCT	p.S476S	PTGS1_uc011lys.1_Silent_p.S414S|PTGS1_uc010mwb.1_Silent_p.S330S|PTGS1_uc004bmf.1_Silent_p.S439S|PTGS1_uc004bmh.1_Silent_p.S367S|PTGS1_uc011lyt.1_Silent_p.S367S	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	476					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CCTACACCTCCTTCCAGGAGC	0.378													7	23					0	0	0.003080	0	0
OR1L8	138881	broad.mit.edu	37	9	125330619	125330619	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:125330619G>A	uc004bmp.1	-	1	138	c.138C>T	c.(136-138)ATC>ATT	p.I46I		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						TGGCCAGGATGATGAGCAGGT	0.483													24	44					0	0	0.003954	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377421	125377421	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:125377421C>T	uc011lyy.1	+	1	405	c.405C>T	c.(403-405)ATC>ATT	p.I135I		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACACTATGATCCTGACTAGAA	0.473													18	54					0	0	0.006122	0	0
OR1L6	392390	broad.mit.edu	37	9	125512364	125512364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:125512364C>T	uc011lzc.1	+	1	346	c.346C>T	c.(346-348)CCT>TCT	p.P116S		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	116	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGTCATAGTGCCTAAGATGCT	0.468													23	37					0	0	0.003330	0	0
CRB2	286204	broad.mit.edu	37	9	126128238	126128238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:126128238C>T	uc004bnx.1	+	3	553	c.461C>T	c.(460-462)CCC>CTC	p.P154L	CRB2_uc004bnw.1_Missense_Mutation_p.P154L	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	154	Extracellular (Potential).|EGF-like 3; calcium-binding (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GCCTCAGCGCCCTGCCTGCAC	0.701													4	26					0	0	0.006214	0	0
TRUB2	26995	broad.mit.edu	37	9	131073167	131073167	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:131073167T>A	uc004buq.1	-	7	679	c.669A>T	c.(667-669)TTA>TTT	p.L223F		NM_015679	NP_056494	O95900	TRUB2_HUMAN	TruB pseudouridine (psi) synthase homolog 2	223					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(1)	1						CCAACCTACCTAAGAGGAATT	0.552													26	52					0	0	0.005443	0	0
C9orf78	51759	broad.mit.edu	37	9	132593232	132593232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:132593232G>A	uc004byp.2	-	6	532	c.460C>T	c.(460-462)CGT>TGT	p.R154C	C9orf78_uc004byo.2_Missense_Mutation_p.R79C|C9orf78_uc004byq.1_Missense_Mutation_p.R100C	NM_016520	NP_057604	Q9NZ63	CI078_HUMAN	chromosome 9 open reading frame 78	154											0		Ovarian(14;0.00556)				GAGGAAACACGGATGTTTTCT	0.473													10	15					0	0	0.006214	0	0
NUP214	8021	broad.mit.edu	37	9	134011373	134011373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:134011373C>T	uc004cag.2	+	9	1096	c.985C>T	c.(985-987)CTT>TTT	p.L329F	NUP214_uc004cah.2_Missense_Mutation_p.L329F|NUP214_uc004caf.1_Missense_Mutation_p.L329F	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	329					carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		AGTTAGTATCCTTGCTCGACA	0.308			T	DEK|SET|ABL1	AML|T-ALL								17	27					0	0	0.008871	0	0
BAT2L1	84726	broad.mit.edu	37	9	134321957	134321958	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:134321957_134321958CC>TT	uc004can.3	+	6	838_839	c.783_784CC>TT	c.(781-786)GTCCGA>GTTTGA	p.R262*	BAT2L1_uc010mzj.1_5'Flank|BAT2L1_uc004cam.1_Nonsense_Mutation_p.R262*	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	262							protein binding				0						CTCAGCCTGTCCGAAAAGGGGC	0.54													10	14					0	0	0.004672	0	0
UCK1	83549	broad.mit.edu	37	9	134404656	134404656	+	Silent	SNP	A	G	G			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:134404656A>G	uc004cay.2	-	4	468	c.367T>C	c.(367-369)TTA>CTA	p.L123L	UCK1_uc010mzk.2_Silent_p.L114L|UCK1_uc004cba.2_Silent_p.L123L|UCK1_uc004caz.2_RNA	NM_031432	NP_113620	Q9HA47	UCK1_HUMAN	uridine-cytidine kinase 1 isoform a	123					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;2.34e-05)|Epithelial(140;0.000219)		GTCTCTGGTAACCTGAGGGGC	0.602													6	27					0	0	0.001168	0	0
C9orf171	389799	broad.mit.edu	37	9	135413046	135413046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:135413046G>A	uc004cbn.2	+	5	739	c.691G>A	c.(691-693)GAA>AAA	p.E231K	C9orf171_uc004cbo.2_Missense_Mutation_p.E195K	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	231										ovary(4)|large_intestine(1)	5						GTGGGTACAGGAACAAAAGGC	0.552													22	65					0	0	0.002299	0	0
DBH	1621	broad.mit.edu	37	9	136508610	136508610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:136508610G>A	uc004cel.2	+	4	829	c.820G>A	c.(820-822)GAC>AAC	p.D274N		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	274	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CCCCGAGATGGACAGCGTCCC	0.652													22	50					0	0	0.002780	0	0
COL5A1	1289	broad.mit.edu	37	9	137687133	137687133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:137687133G>A	uc004cfe.2	+	34	3153	c.2771G>A	c.(2770-2772)CGG>CAG	p.R924Q		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	924	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGAGGCCCCCGGGGCATCACT	0.632													26	54					0	0	0.006320	0	0
COL5A1	1289	broad.mit.edu	37	9	137708903	137708903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:137708903C>T	uc004cfe.2	+	53	4536	c.4154C>T	c.(4153-4155)CCA>CTA	p.P1385L		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1385	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GAACCAGGTCCATCGGGGCCT	0.542													12	32					0	0	0.001368	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713205	138713205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:138713205G>A	uc004cgr.3	-	11	3302	c.3302C>T	c.(3301-3303)TCC>TTC	p.S1101F	CAMSAP1_uc004cgq.3_Missense_Mutation_p.S991F|CAMSAP1_uc010nbg.2_Missense_Mutation_p.S823F	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1101						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CGGCCTTCCGGAACGGGAATT	0.637													14	43					0	0	0.001855	0	0
ANAPC2	29882	broad.mit.edu	37	9	140082095	140082095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:140082095C>T	uc004clr.1	-	2	651	c.578G>A	c.(577-579)GGG>GAG	p.G193E	ANAPC2_uc004clq.1_Missense_Mutation_p.G52E|ANAPC2_uc011mer.1_Missense_Mutation_p.G193E|SSNA1_uc004cls.2_5'Flank	NM_013366	NP_037498	Q9UJX6	ANC2_HUMAN	anaphase-promoting complex subunit 2	193					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of cyclin-dependent protein kinase activity	anaphase-promoting complex|cytosol|nucleoplasm	ubiquitin protein ligase binding|ubiquitin-protein ligase activity			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.000858)		GTCTGTGCCCCCTTCCCCCTT	0.587													18	53					0	0	0.006122	0	0
ENTPD8	377841	broad.mit.edu	37	9	140331429	140331429	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:140331429G>A	uc004cmw.2	-	5	631	c.447C>T	c.(445-447)GTC>GTT	p.V149V	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Silent_p.V149V|ENTPD8_uc004cmy.2_3'UTR	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	149	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		ACCGGCCCAGGACCTGGGTGA	0.662													18	37					0	0	0.006122	0	0
CACNA1B	774	broad.mit.edu	37	9	140938267	140938267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:140938267G>A	uc004cog.2	+	21	3473	c.3328G>A	c.(3328-3330)GAG>AAG	p.E1110K	CACNA1B_uc011mfd.1_Missense_Mutation_p.E640K|CACNA1B_uc004coi.2_Missense_Mutation_p.E320K	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1110	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GGGGAAGAAGGAGGTGGAAGC	0.587													37	94					0	0	0.004289	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407503	1407503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:1407503G>A	uc010nct.2	+	6	633	c.311G>A	c.(310-312)GGA>GAA	p.G104E	CSF2RA_uc011mhb.1_Missense_Mutation_p.G104E|CSF2RA_uc004cpq.2_Missense_Mutation_p.G104E|CSF2RA_uc004cpn.2_Missense_Mutation_p.G104E|CSF2RA_uc004cpo.2_Missense_Mutation_p.G104E|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_5'UTR|CSF2RA_uc004cpp.2_Missense_Mutation_p.G104E|CSF2RA_uc010ncv.2_Missense_Mutation_p.G104E|CSF2RA_uc004cpr.2_Missense_Mutation_p.G104E	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	104	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AGTCAAAGAGGATTTCAACAG	0.443													64	153					0	0	0.003610	0	0
MXRA5	25878	broad.mit.edu	37	X	3241350	3241350	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:3241350C>T	uc004crg.3	-	5	2533	c.2376G>A	c.(2374-2376)GGG>GGA	p.G792G		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	792						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGAGATTTTTCCCACGGACTT	0.453													30	16					0	0	0.009535	0	0
CLCN4	1183	broad.mit.edu	37	X	10176399	10176399	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:10176399C>T	uc004csy.3	+	9	1588	c.1158C>T	c.(1156-1158)CCC>CCT	p.P386P	CLCN4_uc011mid.1_Silent_p.P292P	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	386						early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TTGCCTACCCCAATCCCTACA	0.567													50	20					0	0	0.003610	0	0
DMD	1756	broad.mit.edu	37	X	32632560	32632560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:32632560C>T	uc004dda.1	-	12	1586	c.1342G>A	c.(1342-1344)GTT>ATT	p.V448I	DMD_uc004dcz.2_Missense_Mutation_p.V325I|DMD_uc004dcy.1_Missense_Mutation_p.V444I|DMD_uc004ddb.1_Missense_Mutation_p.V440I|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.V440I|DMD_uc010ngp.1_Intron|DMD_uc010ngq.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	448	Spectrin 2.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCCATTAAAACTCTATGTAAA	0.323													5	3					0	0	0.000602	0	0
FAM47A	158724	broad.mit.edu	37	X	34149014	34149014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:34149014G>A	uc004ddg.2	-	1	1415	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	461										ovary(4)|central_nervous_system(1)	5						CCCACAAGGGGATTTATGAGG	0.582													19	11					0	0	0.010504	0	0
CXorf22	170063	broad.mit.edu	37	X	35988949	35988949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:35988949G>A	uc004ddj.2	+	11	1938	c.1879G>A	c.(1879-1881)GAA>AAA	p.E627K	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	627										large_intestine(1)|lung(1)|ovary(1)	3						TACTACATTTGAAAAACAGCA	0.289													4	2					0	0	0.009096	0	0
FGD1	2245	broad.mit.edu	37	X	54496550	54496550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:54496550C>T	uc004dtg.2	-	4	1734	c.1000G>A	c.(1000-1002)GAG>AAG	p.E334K	FGD1_uc011moi.1_Missense_Mutation_p.E92K	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	334					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CTGTCAACCTCTTGGGAGCCA	0.527													12	4					0	0	0.001855	0	0
FAM123B	139285	broad.mit.edu	37	X	63410232	63410232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:63410232G>A	uc004dvo.2	-	2	3208	c.2935C>T	c.(2935-2937)CAG>TAG	p.Q979*		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	979	Pro-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						CTGTCCAACTGGTTGGGGCTT	0.562													7	6					0	0	0.001984	0	0
XIST	7503	broad.mit.edu	37	X	73053208	73053208	+	RNA	SNP	T	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:73053208T>A	uc004ebm.1	-	3		c.11438A>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCTCAGAATGTCCTTAAGAAG	0.418													16	12					0	0	0.002299	0	0
MAGEE2	139599	broad.mit.edu	37	X	75003415	75003415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:75003415C>T	uc004ecj.1	-	1	1657	c.1472G>A	c.(1471-1473)CGA>CAA	p.R491Q		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	491	MAGE 2.									ovary(1)|skin(1)	2						GTTCTGTGGTCGCTTTCTGTA	0.478													14	11					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	X	80185528	80185528	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:80185528T>C	uc004eec.1	+	1	601	c.427T>C	c.(427-429)TTC>CTC	p.F143L						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		GACTGATGAATTCCAGCTTCA	0.488													26	14					0	0	0.003330	0	0
CYLC1	1538	broad.mit.edu	37	X	83129493	83129493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:83129493G>A	uc004eei.1	+	4	1798	c.1777G>A	c.(1777-1779)GAA>AAA	p.E593K	CYLC1_uc004eeh.1_Missense_Mutation_p.E592K	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	593					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						TGAAAAAGGGGAAAAAGCAAG	0.423													12	2					0	0	0.000978	0	0
COL4A5	1287	broad.mit.edu	37	X	107814658	107814658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:107814658C>T	uc004enz.1	+	7	602	c.400C>T	c.(400-402)CCA>TCA	p.P134S	COL4A5_uc011mso.1_Missense_Mutation_p.P134S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	134	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						ACGTGGATTTCCAGGCAGTCC	0.368									Alport_syndrome_with_Diffuse_Leiomyomatosis				44	45					0	0	0.003610	0	0
COL4A5	1287	broad.mit.edu	37	X	107834830	107834830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:107834830G>A	uc004enz.1	+	21	1581	c.1379G>A	c.(1378-1380)GGA>GAA	p.G460E	COL4A5_uc011mso.1_Missense_Mutation_p.G460E|COL4A5_uc004eob.1_Missense_Mutation_p.G68E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	460	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGCCCCCCAGGATCTCCAGGT	0.398									Alport_syndrome_with_Diffuse_Leiomyomatosis				31	15					0	0	0.004289	0	0
PAK3	5063	broad.mit.edu	37	X	110391071	110391071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:110391071C>T	uc004epa.2	+	4	455	c.428C>T	c.(427-429)TCC>TTC	p.S143F	PAK3_uc010npt.1_Missense_Mutation_p.S128F|PAK3_uc010npu.1_Missense_Mutation_p.S128F|PAK3_uc004eoy.1_5'UTR|PAK3_uc004eoz.2_Missense_Mutation_p.S128F|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.S164F|PAK3_uc010npw.1_Missense_Mutation_p.S149F	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	143	Autoregulatory region (By similarity).|Linker.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						TTCTATGATTCCAAAGAAACA	0.378										TSP Lung(19;0.15)			13	6					0	0	0.001368	0	0
DCX	1641	broad.mit.edu	37	X	110544926	110544926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:110544926C>T	uc004epd.2	-	7	1487	c.1315G>A	c.(1315-1317)GAT>AAT	p.D439N	DCX_uc011msv.1_Missense_Mutation_p.D444N|DCX_uc004epe.2_Missense_Mutation_p.D358N|DCX_uc004epf.2_Missense_Mutation_p.D363N|DCX_uc004epg.2_Missense_Mutation_p.D358N	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	439					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						TACATGGAATCACCAAGCGAG	0.448													26	18					0	0	0.002096	0	0
HTR2C	3358	broad.mit.edu	37	X	114141390	114141390	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:114141390C>T	uc004epu.1	+	6	1517	c.789C>T	c.(787-789)TTC>TTT	p.F263F	HTR2C_uc010nqc.1_Silent_p.F263F|HTR2C_uc004epv.1_Missense_Mutation_p.P232S	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	263	Cytoplasmic (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	GTCTGGATTTCCTGAAGTGCT	0.522													40	22					0	0	0.006230	0	0
IL13RA1	3597	broad.mit.edu	37	X	117895132	117895132	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:117895132C>T	uc004eqs.2	+	6	751	c.708C>T	c.(706-708)CTC>CTT	p.L236L	IL13RA1_uc004eqr.1_Silent_p.L236L|IL13RA1_uc004eqt.1_Silent_p.L236L	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	236	Extracellular (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						TTAAAAACCTCTCCTTCCACA	0.338													34	17					0	0	0.003755	0	0
LONRF3	79836	broad.mit.edu	37	X	118140157	118140157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:118140157C>T	uc004eqw.2	+	6	1520	c.1489C>T	c.(1489-1491)CAC>TAC	p.H497Y	LONRF3_uc004eqx.2_Missense_Mutation_p.H456Y|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Missense_Mutation_p.H241Y	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	497	RING-type 2.				proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						ATGCCTAGATCACAACGCAAA	0.348													45	27					0	0	0.003610	0	0
ODZ1	10178	broad.mit.edu	37	X	123663718	123663718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:123663718C>T	uc004euj.2	-	16	2831	c.2767G>A	c.(2767-2769)GGA>AGA	p.G923R	ODZ1_uc011muj.1_Missense_Mutation_p.G922R|ODZ1_uc010nqy.2_Missense_Mutation_p.G923R	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	923	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ACATACCTTCCATCTTGCCGG	0.483													26	20					0	0	0.009535	0	0
SPANXE	171489	broad.mit.edu	37	X	140785801	140785801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:140785801G>A	uc004fbq.2	-	2	208	c.115C>T	c.(115-117)CCG>TCG	p.P39S		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	39	Nuclear localization signal (Potential).					cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					AGTTTTTTCGGAGCAGGTTGC	0.483													35	23					0	0	0.003755	0	0
MAGEC3	139081	broad.mit.edu	37	X	140983092	140983092	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:140983092C>A	uc011mwp.1	+	5	947	c.947C>A	c.(946-948)TCC>TAC	p.S316Y	MAGEC3_uc004fbs.2_5'UTR|MAGEC3_uc010nsj.2_5'Flank	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	316	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GATGTGCTTTCCCGACTTGCA	0.547													25	27					6.50621e-10	6.63747e-10	0.002836	1	0
MAGEC1	9947	broad.mit.edu	37	X	140993481	140993481	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:140993481G>A	uc004fbt.2	+	4	577	c.291G>A	c.(289-291)CAG>CAA	p.Q97Q	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	97							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCTCTCCAGAATTCTCAGA	0.572										HNSCC(15;0.026)			42	15					0	0	0.008740	0	0
AFF2	2334	broad.mit.edu	37	X	148062317	148062317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:148062317G>A	uc004fcp.2	+	19	4099	c.3620G>A	c.(3619-3621)GGA>GAA	p.G1207E	AFF2_uc004fcq.2_Missense_Mutation_p.G1197E|AFF2_uc004fcr.2_Missense_Mutation_p.G1168E|AFF2_uc011mxb.1_Missense_Mutation_p.G1172E|AFF2_uc004fcs.2_Missense_Mutation_p.G1172E|AFF2_uc011mxc.1_Missense_Mutation_p.G848E	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	1207					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GTAAGCAATGGAAAGTAAGTA	0.368													22	11					0	0	0.001882	0	0
PASD1	139135	broad.mit.edu	37	X	150832599	150832599	+	Silent	SNP	T	C	C			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:150832599T>C	uc004fev.3	+	11	1182	c.850T>C	c.(850-852)TTG>CTG	p.L284L		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	284						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGCCTTATCCTTGCAAGACTT	0.478													15	20					0	0	0.004007	0	0
PRRG3	79057	broad.mit.edu	37	X	150868549	150868549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:150868549G>A	uc004few.1	+	3	479	c.89G>A	c.(88-90)GGC>GAC	p.G30D		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	30	Gla.|Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTGCGCCAGGGCACCATCGAG	0.562													16	7					0	0	0.004007	0	0
GABRE	2564	broad.mit.edu	37	X	151138709	151138709	+	Silent	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:151138709G>A	uc004ffi.2	-	2	276	c.222C>T	c.(220-222)ATC>ATT	p.I74I	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	74	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TAGTGTTCAGGATGCGAGAGG	0.537													33	22					0	0	0.003755	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899902	151899902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:151899902G>A	uc010ntp.2	-	3	1253	c.899C>T	c.(898-900)TCC>TTC	p.S300F	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.S300F	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	300	MAGE.			S -> P (in Ref. 1; AAA19023).						skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGGTGGGTAGGAAATGTGAGG	0.567													39	35					0	0	0.007835	0	0
ATP2B3	492	broad.mit.edu	37	X	152826321	152826321	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrX:152826321C>T	uc004fht.1	+	17	3153	c.3027C>T	c.(3025-3027)ATC>ATT	p.I1009I	ATP2B3_uc004fhs.1_Silent_p.I1009I|ATP2B3_uc010nuf.1_Silent_p.I32I|ATP2B3_uc004fhu.1_5'Flank	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	1009	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TCTGCACCATCGTTTTGGGCA	0.567													15	10					0	0	0.002450	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	5605943	5605943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrY:5605943C>T	uc004fqo.2	+	5	4717	c.3983C>T	c.(3982-3984)TCC>TTC	p.S1328F		NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	1328	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GCCAGACCGTCCAGAGGTGAT	0.383													25	11					0	0	0.003330	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16941845	16941845	+	Silent	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrY:16941845C>T	uc004ftg.2	+	5	1299	c.1047C>T	c.(1045-1047)ATC>ATT	p.I349I	NLGN4Y_uc004fte.2_Silent_p.I181I|NLGN4Y_uc011nas.1_Silent_p.I369I|NLGN4Y_uc004ftf.2_Silent_p.I42I|NLGN4Y_uc004fth.2_Silent_p.I349I	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	349	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						GCGACGTCATCCCAGACGACC	0.572													15	8					0	0	0.002780	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16952555	16952555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chrY:16952555C>T	uc004ftg.2	+	6	2116	c.1864C>T	c.(1864-1866)CCC>TCC	p.P622S	NLGN4Y_uc004fte.2_Missense_Mutation_p.P454S|NLGN4Y_uc011nas.1_Missense_Mutation_p.P642S|NLGN4Y_uc004ftf.2_Missense_Mutation_p.P315S|NLGN4Y_uc004fth.2_Missense_Mutation_p.P622S	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	622	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						GACATCATTTCCCTATGGCAC	0.483													35	11					0	0	0.003214	0	0
LCE1B	353132	broad.mit.edu	37	1	152785074	152785097	+	In_Frame_Del	DEL	GCTGTGGCTCCAGCTCTGGGGGAA	-	-	rs79241619	byFrequency	TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr1:152785074_152785097delGCTGTGGCTCCAGCTCTGGGGGAA	uc001faq.2	+	1	628_651	c.152_175delGCTGTGGCTCCAGCTCTGGGGGAA	c.(151-177)TGCTGTGGCTCCAGCTCTGGGGGAAGC>TGC	p.CGSSSGGS52del		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	52_59	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCCGGAGGCTGCTGTGGCTCCAGCTCTGGGGGAAGCTGTGGCTC	0.585													12	82	---	---	---	---					
ABLIM1	3983	broad.mit.edu	37	10	116361718	116361718	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr10:116361718delC	uc010qsg.1	-	2	346	c.247delG	c.(247-249)GCCfs	p.A83fs	ABLIM1_uc010qsh.1_Frame_Shift_Del_p.A23fs|ABLIM1_uc010qsi.1_Frame_Shift_Del_p.A23fs|ABLIM1_uc010qsk.1_Frame_Shift_Del_p.A7fs|ABLIM1_uc009xyp.2_Frame_Shift_Del_p.A17fs|ABLIM1_uc001lbz.1_Frame_Shift_Del_p.A6fs	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	83					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		TGAGGGTGGGCCACTGAAAGA	0.493													23	27	---	---	---	---					
ARIH2	10425	broad.mit.edu	37	3	49008031	49008031	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr3:49008031delC	uc003cvb.2	+	8	976	c.664delC	c.(664-666)CATfs	p.H222fs	ARIH2_uc003cvc.2_Frame_Shift_Del_p.H222fs|ARIH2_uc003cvf.2_Frame_Shift_Del_p.H140fs|ARIH2_uc010hkl.2_Frame_Shift_Del_p.H222fs	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	222	IBR-type.				developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		TTCACAGAGTCATTACCAGCT	0.502													14	76	---	---	---	---					
SRP72	6731	broad.mit.edu	37	4	57350909	57350909	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr4:57350909delA	uc003hbv.2	+	10	1005	c.965delA	c.(964-966)CAAfs	p.Q322fs	SRP72_uc010ihe.2_Frame_Shift_Del_p.Q261fs|SRP72_uc003hbw.1_Frame_Shift_Del_p.Q83fs	NM_006947	NP_008878	O76094	SRP72_HUMAN	signal recognition particle 72kDa	322					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|nucleolus|plasma membrane|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|signal recognition particle binding			ovary(1)	1	Glioma(25;0.08)|all_neural(26;0.101)					TAGGCTGAACAATGCCGCAAA	0.418													20	40	---	---	---	---					
RAD17	5884	broad.mit.edu	37	5	68709960	68709960	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:68709960delG	uc003jwo.2	+	16	1949	c.1887delG	c.(1885-1887)CTGfs	p.L629fs	RAD17_uc003jwg.2_Frame_Shift_Del_p.L618fs|RAD17_uc003jwh.2_Frame_Shift_Del_p.L618fs|RAD17_uc003jwi.2_Frame_Shift_Del_p.L618fs|RAD17_uc003jwj.2_Frame_Shift_Del_p.L618fs|RAD17_uc003jwk.2_Frame_Shift_Del_p.L618fs|RAD17_uc003jwl.2_Frame_Shift_Del_p.L618fs|RAD17_uc003jwm.2_Frame_Shift_Del_p.L453fs|RAD17_uc003jwn.2_Frame_Shift_Del_p.L532fs|RAD17_uc003jwp.2_Frame_Shift_Del_p.L189fs|MARVELD2_uc010ixf.2_5'Flank|MARVELD2_uc003jwr.1_5'Flank|MARVELD2_uc003jwq.2_5'Flank	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	629	Interaction with MCM7.				cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		AGGAATCTCTGGGTGAACCCA	0.527								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					28	66	---	---	---	---					
GEMIN5	25929	broad.mit.edu	37	5	154271035	154271036	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr5:154271035_154271036delAA	uc003lvx.3	-	26	4110_4111	c.4027_4028delTT	c.(4027-4029)TTGfs	p.L1343fs	GEMIN5_uc011ddk.1_Frame_Shift_Del_p.L1342fs	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1343					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGTGAGTCTCAAGTCTAGTTCT	0.475													28	111	---	---	---	---					
KLHL32	114792	broad.mit.edu	37	6	97587157	97587158	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr6:97587157_97587158insA	uc010kcm.1	+	11	2334_2335	c.1862_1863insA	c.(1861-1863)TGAfs	p.*621fs	KLHL32_uc011ead.1_Frame_Shift_Ins_p.*585fs|KLHL32_uc003poz.2_Frame_Shift_Ins_p.*177fs|KLHL32_uc011eae.1_Frame_Shift_Ins_p.*552fs|KLHL32_uc003ppa.2_RNA	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	621										ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		GGCACCATCTGAAAAGCCAAGC	0.450													19	52	---	---	---	---					
ZKSCAN5	23660	broad.mit.edu	37	7	99128970	99128970	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:99128970delA	uc003uqv.2	+	7	1742	c.1618delA	c.(1618-1620)AAAfs	p.K540fs	ZKSCAN5_uc010lfx.2_Frame_Shift_Del_p.K540fs|ZKSCAN5_uc003uqw.2_Frame_Shift_Del_p.K540fs|ZKSCAN5_uc003uqx.2_Frame_Shift_Del_p.K467fs|ZKSCAN5_uc003uqy.2_Frame_Shift_Del_p.K276fs	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	540					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					ATATGTCCACAAAAAATCCTC	0.418													13	23	---	---	---	---					
LMBR1	64327	broad.mit.edu	37	7	156589158	156589158	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr7:156589158delG	uc003wmw.3	-	5	563	c.348delC	c.(346-348)TCCfs	p.S116fs	LMBR1_uc003wmv.3_5'UTR|LMBR1_uc003wmx.3_5'UTR|LMBR1_uc010lqn.2_Frame_Shift_Del_p.S116fs|LMBR1_uc011kvx.1_Frame_Shift_Del_p.S95fs	NM_022458	NP_071903	Q8WVP7	LMBR1_HUMAN	limb region 1 protein	116	Helical; (Potential).					integral to membrane	receptor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.208)		AACAAAGGTTGGAAAAAAGGG	0.333													9	16	---	---	---	---					
ABO	28	broad.mit.edu	37	9	136131057	136131057	+	Frame_Shift_Del	DEL	G	-	-	rs56392308		TCGA-EE-A2MI-06A-11D-A197-08	TCGA-EE-A2MI-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6507e084-c038-4ba6-a431-fb9a53190d5f	231598d2-a4cd-4a61-b98a-3f41220659cd	g.chr9:136131057delG	uc004cda.1	-	8	1086	c.1061delC	c.(1060-1062)CCGfs	p.P354fs	ABO_uc010naf.1_Frame_Shift_Del_p.P213fs|ABO_uc011mcz.1_Frame_Shift_Del_p.P213fs|ABO_uc010nag.1_Frame_Shift_Del_p.P213fs	NM_020469	NP_065202	P16442	BGAT_HUMAN	ABO blood group (alpha	354	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	fucosylgalactoside 3-alpha-galactosyltransferase activity|glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity|metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;5.82e-06)|Epithelial(140;3.45e-05)		AGCCGCTCACGGGTTCCGGAC	0.662													5	3	---	---	---	---					
